BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024207
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/272 (63%), Positives = 213/272 (78%), Gaps = 5/272 (1%)
Query: 1 MFRNVLRSIIPNAPNLRHICLQTGGKHYLGPFDCIGKI-PYDPPFTEDLPRLNIPLFYYN 59
MFRNVL ++IPN PNL+HI LQTG KHY+GPF+ GKI +DPP+TEDLPRL FYY+
Sbjct: 97 MFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYD 156
Query: 60 QEDILFEEVEKREGLTWSIHRPFGIFGFSPYSLMNIIATLCMYAAICKHEGIPLLFPGTK 119
EDI+ EEVEK+EGLTWS+HRP IFGFSPYS+MN++ TLC+YAAICKHEG L F G K
Sbjct: 157 LEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCK 216
Query: 120 ETWEGFSEYSDADLIAEQQIWAAVDANARNEAFNCTNGDVFKWKHLWKALAEQFEIENYG 179
W+G+S+ SDADLIAE IWAAVD A+NEAFN +NGDVFKWKH WK LAEQF +E
Sbjct: 217 AAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVE--- 273
Query: 180 FGDEKDSERMRLGEFMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMGLNIGAGYLVSM 239
G+ ++ ++L + MKGKE VWEEIVREN L PTKL +V +W + D+ L +L SM
Sbjct: 274 CGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILG-NECFLDSM 332
Query: 240 NKSKEHGFLGFRNSKNSFVTWIGRLKSHRIVP 271
NKSKEHGFLGFRNSKN+F++WI + K+++IVP
Sbjct: 333 NKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 31 PFDCIGKIPYDPPFTEDLPRLNIPLFYYNQEDILFEEVEKREGLTWSIHRPFGIFGFSPY 90
P + + KIP D F+E P+ + +LFE REG++ +H G G +
Sbjct: 104 PVEFVYKIPDDMSFSEAAA---FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVA 160
Query: 91 SLMNIIATLCMY--AAICKHEGI 111
L + + + ++ A+ KHE I
Sbjct: 161 QLCSTVPNVTVFGTASTFKHEAI 183
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1 MFRNVLRSIIPNAPNLRHICLQTGGKHYLGPFDCI 35
M +N++RSI+ L + TG HYL P D I
Sbjct: 305 MIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 339
>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 175
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 102 YAAICKHEGIPLLFPGTKETWEGFSEYSDADL-IAEQQIWAAVDANARNEAFNCT-NGDV 159
++ IC H+G PL + +T+ +S D QQ+W N NGD+
Sbjct: 99 FSTICPHKGFPLSYSADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRVADNGDI 158
Query: 160 F 160
F
Sbjct: 159 F 159
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 75 DPDIKAQYQQRWLAIDANARREVKN 99
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 130 DADLIAE-QQIWAAVDANARNEAFN 153
D D+ A+ QQ W A+DANAR E N
Sbjct: 69 DPDIKAQYQQRWLAIDANARREVKN 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,346,536
Number of Sequences: 62578
Number of extensions: 417368
Number of successful extensions: 838
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 15
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)