Your job contains 1 sequence.
>024210
MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLI
MSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKF
EFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDIHWVREVDFT
PSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPLSFMGP
EVGVSKLARILNVKRHGGAHHARSNSLLTSQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024210
(271 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 291 1.1e-25 2
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 118 2.1e-07 2
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 291 (107.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 75/183 (40%), Positives = 103/183 (56%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + +A+V+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIMSLA------GNSYLKASYVKRRT---PHYKLG--DDLKLNFGCQISKDKFSVFWSPE 107
LI++ A G SYLKA V++ P L LK+ FGCQ+S KF WS +
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 108 NVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY 167
+V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 168 KND 170
+ +
Sbjct: 181 EKE 183
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 47/171 (27%), Positives = 81/171 (47%)
Query: 86 DLKLNFGCQISKDKFSVFWSPENVSVKLC-SDLRKFEFFLSYESVDSRFELSDESISQIE 144
D+ ++FG + K FS W ++ ++L ++ + + S + S+F L + I +
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLH-SPQGRSSKF-LVIQVIGAPK 178
Query: 145 LHIPSGHSVKYLVIQLHGPPMIYKN--DIHWVREVDFTPSSSVGKSSAICLELPTRAHIP 202
+ + L G Y + D W+R DFT SS +G+S+A CLELP ++P
Sbjct: 179 IFEKEDQPINLLF----GIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234
Query: 203 KALKDLFYYKESPVQ-FTLVPGSVFSCNSD-LIPLSFMGPEVGVSKLARIL 251
++ Y E F + GS +S N++ L+P+ + P G S IL
Sbjct: 235 DFRENFANYAEHRASSFLIESGSSYSSNANTLVPV--VDPPPGFSLPFEIL 283
Score = 40 (19.1 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 214 SPVQFTLVPGSVFSCNSDLIP--LSFMGPEVGVSKLARIL 251
SP +L G V+ + P + F GPEV VS R+L
Sbjct: 355 SPT-ISLDDGLVYMYRVQVTPARVYFSGPEVNVSN--RVL 391
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 118 (46.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 170 DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCN 229
D W+R DF+ S S+G S+ CLE+ + + L YY+E + T V G F+
Sbjct: 216 DFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASA 275
Query: 230 SDLIPL 235
+ ++PL
Sbjct: 276 AQIVPL 281
Score = 78 (32.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 43/153 (28%), Positives = 67/153 (43%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVG---QNKGLKAHAVVEFTTVEA---AD 58
+ +S + L FLE H GE TV +E+ N + A V+FTT+E A
Sbjct: 12 VKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRAQ 71
Query: 59 LIMSLAG------NSYLKASY---VKRRTPHYKLGDDLKLNFGCQISKDK-FSVFWSPEN 108
L+ S + N L +Y + R K DD+ L G S +K F +
Sbjct: 72 LLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWDG 131
Query: 109 VSVKLCSDLRKFEFFLSYESVDS-RFELSDESI 140
V + ++ R+ EF++ +ES D + E+ E I
Sbjct: 132 VRCWILTEKRRVEFWV-WESGDCYKIEVRFEDI 163
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 271 271 0.00098 114 3 11 22 0.49 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 604 (64 KB)
Total size of DFA: 194 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.64u 0.12s 24.76t Elapsed: 00:00:01
Total cpu time: 24.64u 0.12s 24.76t Elapsed: 00:00:01
Start: Thu May 9 18:16:05 2013 End: Thu May 9 18:16:06 2013