BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024210
(271 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 162/265 (61%), Gaps = 31/265 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
MAK I+L GF + P +K+FLEE++GEGTV V V Q K G + +A+VEFTT EAA
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 59 LIMSLA--------GNSYLKASYVKRRT--------PHYKLGDDLKLNFGCQISKDKFSV 102
I + GNSYLKA V R T Y + D++ L+FGCQ+SK+KFSV
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSM-DNITLHFGCQVSKEKFSV 119
Query: 103 FWSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHG 162
W+ ++VSVK +LRKF FFL++ S + + ELS E+I QIELH P G + KYL++Q+ G
Sbjct: 120 LWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLG 179
Query: 163 PPMIYKNDI------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFY 210
P I+K D W+R+VDF+PS +G+SSA+CLELP + +P ++
Sbjct: 180 GPKIFKKDTSKLSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVC 239
Query: 211 YKESPVQFTLVPGSVFSCNSDLIPL 235
YKE F L GS F C SDL+P+
Sbjct: 240 YKEDEGHFILEKGSTFCCKSDLVPI 264
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 39/281 (13%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAAD 58
M K I L GF + V+ +K F+E++TGEGTV +++ KG +A A+++FTT +A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60
Query: 59 LIMSLAGN---------SYLKASYVKRR-TPHYKLG----DDLKLNFGCQISKDKFSVFW 104
+MS A N SYLKA ++R P ++ DD+KL+FGCQISK +FSV W
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPP 164
++V V S +RK F S+ +V + ELS E+I +IELH P + +YL+IQL G P
Sbjct: 121 KKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAP 180
Query: 165 MIYKNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
+++ND+ W+R +DFTP S +G+SSAICLELP +P
Sbjct: 181 RVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPN 240
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPLSFMGPEVGV 244
++ YY+ES Q+TL G FS N L+P+ + P +GV
Sbjct: 241 FRENFAYYEESERQYTLQTGVPFSQNWGLVPI--VAPPLGV 279
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 164/278 (58%), Gaps = 30/278 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M+K I + GF S VS +K+FLE++TGEGT+ +E+ Q + HA V+FT+ E A+
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 LIMSLA------GNSYLKASYV------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSP 106
I++L G +YLKA + K R + + D + L+FGCQ+S ++F V W
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSM-DRITLHFGCQMSDERFCVLWKA 119
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
NVSVK S LRKF FFLS+ S + + ELS E+I QI+L P G K+L+IQL G P I
Sbjct: 120 INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179
Query: 167 YKNDI-------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKE 213
Y+ D+ WVRE+DFTPS +G+S A+CLELP + +P ++ YYKE
Sbjct: 180 YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 239
Query: 214 SPVQFTLVPGSVFSCNSDLIPLSFMGPEVGVSKLARIL 251
+ +F L GS +S N L+P+ +GP G S +IL
Sbjct: 240 NDGKFILESGSSYSHNLHLVPI--LGPPQGSSLPFQIL 275
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 160/285 (56%), Gaps = 36/285 (12%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M+K + +SGF S + A++ FLE HTG GTV +++ + + G + +A+V+FTT AA+
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 59 LIMSLA------GNSYLKASYVKRR---TPHYKLG--DDLKLNFGCQISKDKFSVFWSPE 107
I+SLA G+SYL A + R P L + + L+FG Q SK+KFS WS
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 108 NVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY 167
NVSV +RK FFLS+ + + L E+I QIELH P G +VKYL+IQL+G P IY
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180
Query: 168 KNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALK 206
+ D+ WVR DFTPS +G SS++CLELP +P +
Sbjct: 181 ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240
Query: 207 DLFYYKESPVQFTLVPGSVFSCNSDLIPLSFMGPEVGVSKLARIL 251
+ FYYKE+ F L G FS N DL+P+ +GP GV+ IL
Sbjct: 241 NFFYYKENEGTFVLESGLTFSRNPDLVPI--VGPSSGVNLPYNIL 283
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 166/276 (60%), Gaps = 28/276 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLK-AHAVVEFTTVEAAD 58
M K I + G S VS +K+FLE++TGEGT+ +E+ Q K G+ HA V+FT++ A+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 LIMSLA-----GNSYLKASYV------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPE 107
LI+SLA G +YLKA + K RT + + D + L+FG Q+S ++F V W
Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSM-DRITLHFGYQMSNERFCVLWKAI 119
Query: 108 NVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY 167
NVSVK LRKF FFLS+ S + + ELS E+I QI+L P G + K+L+IQL P IY
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179
Query: 168 KNDI------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESP 215
+ D+ WVRE+DFTPS S+G+SSA+CLELP + +P ++ YKE+
Sbjct: 180 EKDVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKEND 239
Query: 216 VQFTLVPGSVFSCNSDLIPLSFMGPEVGVSKLARIL 251
+F L G+ FS N L+P+ +GP G + +IL
Sbjct: 240 RKFILESGASFSGNLHLVPI--VGPPQGSNLPFKIL 273
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 146/272 (53%), Gaps = 41/272 (15%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG--LKAHAVVEFTTVEAAD 58
M K I L GF S V +++K F+E TG GT+ + ++KG + +A+++FT E A
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 LIMSLA------GNSYLKASYVKRRTPHYKLGDDL---------KLNFGCQISKDKFSVF 103
I+S A G SYLKA R H L D L +L+ GCQISK+ FSV
Sbjct: 61 SIISKATERLCYGTSYLKA----REMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVL 116
Query: 104 WSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGP 163
W+ NVSV +LRK FF+SY VD L E+I Q+ELH P G SV YL+IQL G
Sbjct: 117 WTESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGA 176
Query: 164 PMIYKN--------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
P IY+ D W R DFTPS S+G+S+A+CLE+P +P
Sbjct: 177 PRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPN 236
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
Y+KE +FTLV GS +S N +L+P+
Sbjct: 237 FHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPV 268
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 156/268 (58%), Gaps = 16/268 (5%)
Query: 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQ--NKGLKAHAVVEFTTVEAADL 59
K I+L F + + + +K+FLEE++G+GTV V+V Q ++G + A V+FTT EAA
Sbjct: 41 GKTISLYRFRTVETSEDIKEFLEEYSGDGTVVSVDVDQTISEGSRTKAKVQFTTSEAA-- 98
Query: 60 IMSLAGNSYLKASYVK------RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKL 113
+ SYLK + R Y + D++ L+FGCQ+SK+KF W+ ENVSVK
Sbjct: 99 -QKVKLRSYLKVRDMDYDIVPTRMAAEYTI-DNITLHFGCQVSKEKFYALWNKENVSVKF 156
Query: 114 CSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDI-- 171
RK FL+Y S + ELS E+I QIELH P G + K+L++Q+ G I K D
Sbjct: 157 GFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQAKKFLIVQMLGAAKILKKDTDD 216
Query: 172 HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSD 231
WVR+VDF+PS +G+SSA+CLELP +P ++ YKE +F L GS F SD
Sbjct: 217 QWVRDVDFSPSYCIGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSD 276
Query: 232 LIPL--SFMGPEVGVSKLARILNVKRHG 257
L+P+ G E+ + ++ ++ +HG
Sbjct: 277 LVPILREAQGIELPYDIVFKVNSLVQHG 304
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 145/272 (53%), Gaps = 41/272 (15%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG--LKAHAVVEFTTVEAAD 58
M K I L GF S V +++K F+E TG GT+ + ++KG + +A+++FT E A
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 LIMSLA------GNSYLKASYVKRRTPHYKLGDDL---------KLNFGCQISKDKFSVF 103
I+S A G SYLKA R H L D L +L+ GCQISK+ FSV
Sbjct: 61 SIISKATERLCYGTSYLKA----REMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVL 116
Query: 104 WSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGP 163
W+ NVSV D+RK FF+SY VD L E+I Q+ELH P G SV YL+IQL G
Sbjct: 117 WTESNVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGA 176
Query: 164 PMIYKN--------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
P IY+ D W R DFTPS S+G+S+A+CLE+ +P
Sbjct: 177 PRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPN 236
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
Y+KE +FTLV GS +S N +L+P+
Sbjct: 237 FHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPV 268
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 161/286 (56%), Gaps = 32/286 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S +A+K FLE HTG GTV +EV Q+KG +A A V+F ++A+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 60 IMSLA------GNSYLKA-----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPEN 108
I+ LA G SYLKA V+ RT + + D + LNFGCQIS KF+V S ++
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMKTDIVQPRT-YVEHMDGVTLNFGCQISDKKFAVLGS-KD 118
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
VS+K L+K FFLS+ S D + +LS E+I Q+ LH P G + ++L++QL G P IYK
Sbjct: 119 VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYK 178
Query: 169 N-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESP 215
D WVR DFTP S +G SS++CLE +P + FYYKES
Sbjct: 179 RLEDSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFRNGVQLPNFSESFFYYKESM 237
Query: 216 VQFTLVPGSVFSCNSD--LIPLSFM--GPEVGVSKLARILNVKRHG 257
QF L G FS + L+P+ + G E+ L +I ++ +HG
Sbjct: 238 NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHG 283
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 140/262 (53%), Gaps = 29/262 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M+K I + GF S VS + +K FLE+HTG TV VEV Q+KG H V+FT ++ +
Sbjct: 1 MSKTIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHKGDPTTHVDVQFTDRKSVET 60
Query: 60 IMSLAGNSYLKASYV-------------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSP 106
I+ L + YV R PH DD+ ++FGCQ SKDK SV W
Sbjct: 61 ILLLVTQHLSYSDYVLNATEINHDIFPKPRNFPHRM--DDIVVHFGCQTSKDKLSVLWEH 118
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
NVSVK S LRK F +Y ++D + ++S ESIS+IEL + K+L+ QL G PMI
Sbjct: 119 PNVSVKFGSRLRKMYIFFNYLTMDYKLQISSESISRIELRHSDDLTKKFLLFQLRGAPMI 178
Query: 167 YKNDI------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKE- 213
Y+ D+ HW R VDFTPSSS+G+SS +C ELP +PK + Y E
Sbjct: 179 YEKDVSKSKYFKEACDNHWFRGVDFTPSSSIGQSSTLCFELPQSIEVPKFNQHYRNYSEV 238
Query: 214 SPVQFTLVPGSVFSCNSDLIPL 235
FTL FS N +P+
Sbjct: 239 DDSIFTLEKHLGFSSNFKFVPI 260
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 159/286 (55%), Gaps = 31/286 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S +A+K FLE HTG GTV +EV Q+KG +A A V+F ++A++
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 60 IMSLA------GNSYLKA----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENV 109
I+ LA G SYLKA +Y+ + + + D + LNFGCQIS KF+V S + V
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMKTYIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGS-KVV 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
S+K L+K FFLSY S D + +LS E+I Q+ LH P G ++L++QL G P IYK
Sbjct: 120 SIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKR 179
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DFTP S +G SS++CLE +P + FYYKES
Sbjct: 180 LEDSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGVRLPNFSESFFYYKESAN 238
Query: 217 QFTLVPGSVFSCNSD---LIPLSFM--GPEVGVSKLARILNVKRHG 257
Q L G FS + L+P+ + G E+ L +I ++ +HG
Sbjct: 239 QVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHG 284
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 161/286 (56%), Gaps = 32/286 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S +A+K FLE HTG GTV +EV Q+KG ++ A V+F + ++A+L
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRSFARVQFASNKSAEL 60
Query: 60 IMSLA------GNSYLKA-----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPEN 108
I+ LA G SYLKA V+ RT + + D + LNFGCQIS KF+V S ++
Sbjct: 61 IIDLASMGLYYGPSYLKAWEMNTDIVQPRT-YVQHMDGVTLNFGCQISDKKFAVLGS-KD 118
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
VS+K L+K FFLSY S D + +LS E+I Q+ LH P G ++L++QL G P IYK
Sbjct: 119 VSIKFGIGLKKIYFFLSYGSSDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLFGAPRIYK 178
Query: 169 N-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESP 215
D WVR DFTP S +G SS++CLE +P + FYYKES
Sbjct: 179 RLEESCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGIRLPNFRESFFYYKESG 237
Query: 216 VQFTLVPGSVFSCNSD--LIPLSFM--GPEVGVSKLARILNVKRHG 257
Q L G FS + L+P+ + G ++ L +I ++ +HG
Sbjct: 238 NQVILRTGFTFSFSQKLALVPIVHLPNGVDLPYKILFKISSLIQHG 283
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 143/268 (53%), Gaps = 33/268 (12%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLKAHAVVEFTTVEAADL 59
M K I + GF S VS +K FLE +TG TV +++ Q+K +A A+V+FT A L
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IMSLA------GNSYLKA-----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPEN 108
I+ LA G SYLKA V + + + +NFGCQ+S++KF V W +N
Sbjct: 61 IIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADN 120
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
V++ + +RK EF LSY S + EL E+I QIEL P + K+L+IQL G P IY+
Sbjct: 121 VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYE 180
Query: 169 NDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKD 207
++ WVR DFT S+ +G+SS + LELP +P ++
Sbjct: 181 KEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFREN 240
Query: 208 LFYYKESPVQFTLVPGSVFSCNSDLIPL 235
YYKE+ + L GS +SCN L+P+
Sbjct: 241 FAYYKENEGRLVLESGSSYSCNLSLVPI 268
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 157/285 (55%), Gaps = 31/285 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S +A+K FLE HTG GTV +EV Q+KG +A A V+F ++A+L
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEL 60
Query: 60 IMSLA------GNSYLKA-----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPEN 108
IM LA G SYL+A V+ RT + + D + LNFGCQIS KF+V S ++
Sbjct: 61 IMDLASEGLYYGPSYLQAWEMKTDIVQPRT-YVQHMDGVTLNFGCQISDKKFAVLGS-KD 118
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
VS+K L+K FFLSY S D + +LS E+I Q+ LH P G ++L++QL G P I+K
Sbjct: 119 VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCPYGQKAQFLLLQLFGAPRIHK 178
Query: 169 N-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKES- 214
D WVR DFTP S +G SS++CLE +P FYYKES
Sbjct: 179 RLEDSCNSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGVRLPNFSGSFFYYKESG 237
Query: 215 PVQFTLVPGSVFSCNSDLIPLSFM--GPEVGVSKLARILNVKRHG 257
P FT F L+P+ + G E+ L +I ++ +HG
Sbjct: 238 PSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFKISSLIQHG 282
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 142/268 (52%), Gaps = 33/268 (12%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLKAHAVVEFTTVEAADL 59
M K I + GF S VS +K FLE +TG TV +++ Q+K +A A+V+FT A L
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IMSLA------GNSYLKA-----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPEN 108
I+ LA G SYLKA V + + + +NF C +S++KF V W +N
Sbjct: 61 IIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKADN 120
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
V++ + +RK EF LSY S + EL E+I QIEL P + K+L+IQL G P IY+
Sbjct: 121 VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYE 180
Query: 169 NDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKD 207
++ WVR DFT S+ +G+SS +CLELP +P ++
Sbjct: 181 KEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFREN 240
Query: 208 LFYYKESPVQFTLVPGSVFSCNSDLIPL 235
YYKE+ + L GS +SCN L+P+
Sbjct: 241 FAYYKENEGRLVLESGSSYSCNLSLVPI 268
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 146/260 (56%), Gaps = 28/260 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + +S + +K FLE+HTG GT+ +EV Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKASYVKRRTPHYKL----GDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K + D + LNFGCQIS+DKF+V S E V
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMDGITLNFGCQISEDKFAVLGSTE-V 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
S+K L+KF FFLS S D + +LS E+I Q+ LH P G + ++L+IQL G P IYK
Sbjct: 120 SIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKR 179
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DFTP S +G SS++CL+ H+P + F+Y E
Sbjct: 180 LENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYAEREN 238
Query: 217 QFTLVPGSVF--SCNSDLIP 234
TL G F S S L+P
Sbjct: 239 NITLQTGFTFFVSQKSALVP 258
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 143/260 (55%), Gaps = 28/260 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE+HTG GTV +EV Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKASYVKRRTPHYKL----GDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K + D + LNFGCQIS DKF+V S E V
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMDGITLNFGCQISDDKFAVLGSTE-V 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
S+K L+KF FFLS S D + +LS E+I Q+ LH P G + ++L+IQL G P IYK
Sbjct: 120 SIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKR 179
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DF P S +G SS++CL+ H+P + F+Y E
Sbjct: 180 LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYTEREN 238
Query: 217 QFTLVPGSVF--SCNSDLIP 234
TL G F S S L+P
Sbjct: 239 NITLQTGFTFFVSQKSALVP 258
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 149/271 (54%), Gaps = 37/271 (13%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I +SGF S V+ A+K+FLE HTG GTV ++V K G + +A+V+FT+ A+
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 59 LIMSLA------GNSYLKASYV------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSP 106
LI+SLA G+SYLKA K RT Y L ++L L FGCQ+S +KF V W
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTL-EELLLCFGCQVSTEKFRVLWEG 119
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
V +RK F L Y+SV+ R ELS E I QI+LH P S+KYL+IQL G P I
Sbjct: 120 NVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRI 179
Query: 167 YK---------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
YK +D WVR DFT S S+G+SS++CL+LP +P
Sbjct: 180 YKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFK 239
Query: 206 KDLFYYKESPVQFTLVPGSV-FSCNSDLIPL 235
++ YY+E +F L+ FS DL P+
Sbjct: 240 QNFAYYEEFEHEFRLIDEDANFSFCRDLAPI 270
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 144/260 (55%), Gaps = 28/260 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE+HTG GTV +EV Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKA----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA + + + + D + LNFGCQIS DKF+V S E V
Sbjct: 61 IINLASKRLYFGSSYLKAWELETDIVQLWAYVDHMDGITLNFGCQISDDKFAVLGSTE-V 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
S+K L+ F FFLS S D + +LS E+I Q+ LH P G + ++L+IQL G P IYK
Sbjct: 120 SIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKR 179
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DFTP S +G SS++CL+ H+P + F+Y E
Sbjct: 180 LENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYAEREN 238
Query: 217 QFTLVPGSVF--SCNSDLIP 234
TL G F S S L+P
Sbjct: 239 NITLQTGFTFFVSQKSALVP 258
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 150/276 (54%), Gaps = 29/276 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + + +K FLE+HTG GTV ++V Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKASYVKR---RTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVS 110
I++LA G+SYLKA +K + + D + LNFGCQIS DKF+V S E VS
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQVAYVDHMDGITLNFGCQISDDKFAVLGSTE-VS 119
Query: 111 VKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN- 169
+K L+K FFLS S D + +LS E+I Q+ LH P G + ++L+IQL G P IYK
Sbjct: 120 IKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRL 179
Query: 170 ------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQ 217
D WVR DF P S +G SS++CL+ H+P + F+Y E
Sbjct: 180 ENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENN 238
Query: 218 FTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
TL G F S S L+P + P G++ +IL
Sbjct: 239 ITLQTGFTFFISQKSALVP--NVQPPEGIAIPYKIL 272
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 151/277 (54%), Gaps = 30/277 (10%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE++TG GTV +EV Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 60 IMSLA------GNSYLKASYVK----RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K + + D + LNFGCQIS DKF+V S E V
Sbjct: 61 IITLANNRLYFGSSYLKAWEMKTDIVQLRAYVDQMDGITLNFGCQISDDKFAVLGSTE-V 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
S++ L+KF FFLS S D + +LS E+I Q+ LH P G + ++L+IQL G P IYK
Sbjct: 120 SIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKR 179
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DF P S +G SS++CL+ +P + F+Y E
Sbjct: 180 LENSCYSFFKETPDDQWVRTTDF-PPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAEREN 238
Query: 217 QFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
TL G F S S L+P + P G+S +IL
Sbjct: 239 NITLQTGFTFFVSQKSALVP--NVQPPEGISIPYKIL 273
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 144/271 (53%), Gaps = 38/271 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + +A+V+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIMSLA------GNSYLKASYVK-------RRTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
LI++ A G SYLKA V+ R + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 106 PENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPM 165
++V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 166 IYK-------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALK 206
I++ +D W+R DFT SS +G+S+A CLELP ++P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 207 DLFYYKE-SPVQFTLVPGSVFSCNSD-LIPL 235
+ Y E F + GS +S N++ L+P+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPV 269
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 144/271 (53%), Gaps = 38/271 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + +A+V+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIMSLA------GNSYLKASYVK-------RRTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
LI++ A G SYLKA V+ R + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 106 PENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPM 165
++V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 166 IYK-------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALK 206
I++ +D W+R DFT SS +G+S+A CLELP ++P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 207 DLFYYKESPV-QFTLVPGSVFSCNSD-LIPL 235
+ Y E F + GS +S N++ L+P+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPV 269
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 142/272 (52%), Gaps = 39/272 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + A+V+FT A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 59 LIMSLA-------GNSYLKASYVKRRT---PHYKLGD--DLKLNFGCQISKDKFSVFWSP 106
I++ A G SYL A V + P L + LK+ FGCQ+S KF WS
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
++V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P I
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180
Query: 167 YK-------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKD 207
++ +D W+R DFT SS +G+S+A CLELP ++P ++
Sbjct: 181 FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240
Query: 208 LFYYKE---SPVQFTLVPGSVFSCNSD-LIPL 235
Y E SP F + GS +S N++ L+P+
Sbjct: 241 FANYAEHRASP--FLIESGSSYSSNANKLVPV 270
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 140/262 (53%), Gaps = 29/262 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + A+V+FT A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 59 LIMSLA-------GNSYLKASYVKRRT---PHYKLGD--DLKLNFGCQISKDKFSVFWSP 106
I++ A G SYL A V++ P L + LK+ FGCQ+S KF WS
Sbjct: 61 QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQ------- 159
++V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQKKKPINL 180
Query: 160 LHGPPMIYKN--DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKE---S 214
L G Y + D W+R DFT SS +G+S+A CLELP ++P ++ Y E S
Sbjct: 181 LFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRAS 240
Query: 215 PVQFTLVPGSVFSCNSD-LIPL 235
P F + GS +S N++ L+P+
Sbjct: 241 P--FLIESGSSYSSNANKLVPV 260
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 140/270 (51%), Gaps = 35/270 (12%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + A+V+FT A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60
Query: 59 LIMSLA-------GNSYLKASYVKRRT---PHYKLGD--DLKLNFGCQISKDKFSVFWSP 106
I++ A G SYL A V++ P L + LK+ FGCQ+S WS
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSA 120
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
++VSV +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P I
Sbjct: 121 QDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180
Query: 167 YK-------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKD 207
++ +D W+R DFT SS +G+S+A CLELP ++P ++
Sbjct: 181 FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240
Query: 208 LFYYKESPVQFTLVP-GSVFSCNSD-LIPL 235
Y E L+ GS +S N++ L+P+
Sbjct: 241 FANYAEHRASTYLIESGSSYSSNANKLVPV 270
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 139/272 (51%), Gaps = 39/272 (14%)
Query: 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH----AVVEFTTVEAA 57
K + +SGF S V+ +KD LE+ G G V V++ K + A+ A+V+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 58 DLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFW 104
L+++ A G+ YLKA Y +R RT + L KL+FGC + + SV W
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNL-QGAKLHFGCLLKERVLSVLW 121
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPP 164
S NVSV+ +++ +F L Y S + ELS ESI +I+LH P G K+L+IQ+ P
Sbjct: 122 SGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAP 181
Query: 165 MIYKNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
IY+ +I W R DFTPS+S+G+S +CLELP ++P
Sbjct: 182 KIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPN 241
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
+ YY+ F L PG +S N+ +P+
Sbjct: 242 IREYFVYYEVHNDIFNLQPGYSYSSNTCFVPV 273
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 142/265 (53%), Gaps = 39/265 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLK-AHAVVEFTTVEAAD 58
M K I + G S VS +K+FLE++TGEGT+ +E+ Q K G+ HA V+FT++ A+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 LIMSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLR 118
LI+SLA + +Y+K R ++ L+ I K + +
Sbjct: 61 LIISLAKQLWYGGNYLKAR--------EMDLDI---IPKPR------------TFLHSMD 97
Query: 119 KFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDI------- 171
+ Y+ + RF LS E+I QI+L P G + K+L+IQL P IY+ D+
Sbjct: 98 RITLHFGYQMSNERFCLSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSALSYFK 157
Query: 172 -----HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVF 226
WVRE+DFTPS S+G+SSA+CLELP + +P ++ YKE+ +F L G+ F
Sbjct: 158 ETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASF 217
Query: 227 SCNSDLIPLSFMGPEVGVSKLARIL 251
S N L+P+ +GP G + +IL
Sbjct: 218 SGNLHLVPI--VGPPQGSNLPFKIL 240
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 66/278 (23%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M+K I + GF S VS +K+FLE++TGEGT+ +E+ Q + HA V+FT+ E A+
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 LIMSLA------GNSYLKASYV------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSP 106
I++L G +YLKA + K R + + D + L+FGCQ+S ++F V W
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSM-DRITLHFGCQMSDERFCVLWKA 119
Query: 107 ENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
NVS H P G K+L+IQL G P I
Sbjct: 120 INVS-----------------------------------H-PRGQITKFLLIQLLGAPQI 143
Query: 167 YKNDI-------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKE 213
Y+ D+ WVRE+DFTPS +G+S A+CLELP + +P ++ YYKE
Sbjct: 144 YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 203
Query: 214 SPVQFTLVPGSVFSCNSDLIPLSFMGPEVGVSKLARIL 251
+ +F L GS +S N L+P+ +GP G S +IL
Sbjct: 204 NDGKFILESGSSYSHNLHLVPI--LGPPQGSSLPFQIL 239
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 41/275 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEA 56
+ + I + GFA S +++K+FLE +G GT+ +++ + + +A A+V+F + E+
Sbjct: 2 VGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 ADLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVF 103
A L+ + G YLK R R P + L D + L+ GC + ++ S
Sbjct: 62 ASLVEDVVQRNAPRIGRFYLKTRPADRDIVPRPRIPMFSLEDTV-LHLGCLVKENILSAL 120
Query: 104 WSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHS--VKYLVIQLH 161
++ NVSV+ D++K F+LSY + + ELS ESI +I+LH P + K+L+IQ+
Sbjct: 121 FTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQVQ 180
Query: 162 GPPMIYK---------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAH 200
P IY+ D W R +DFTPS S+G+SS CLE+P +
Sbjct: 181 AAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQCE 240
Query: 201 IPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
+P+ YYKE + F G +SC + L+P+
Sbjct: 241 LPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPI 275
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 138/272 (50%), Gaps = 39/272 (14%)
Query: 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH----AVVEFTTVEAA 57
K + +SGF S V+ +KD LE+ G G V V++ K + A+ A+V+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 58 DLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFW 104
L+++ A G+ YLKA Y +R RT + L KL+FGC + + SV W
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNL-QGAKLHFGCLLKERVLSVLW 121
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPP 164
S +VSV+ +++ +F L Y S + ELS ESI +I+LH P G K+L+IQ+ P
Sbjct: 122 SGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAP 181
Query: 165 MIYKNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
IY+ +I W R DFTPS+S+G+S + LELP ++P
Sbjct: 182 KIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLPN 241
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
+ YY+ F L PG +S N+ +P+
Sbjct: 242 IREYFVYYEVHNDIFNLQPGYSYSSNTCFVPV 273
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 135/287 (47%), Gaps = 52/287 (18%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH---AVVEFTTVEAA 57
M K I + GF V+ +K+FLE HTG+GTVS V + + K K V F + AA
Sbjct: 1 MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60
Query: 58 DLIMSLAG---------NSYLKASYVKRRT----PHYKLGDDLKLNFGCQISKDKFSVFW 104
+ I++ A +SYLKA V+++ P + +D+K G ISKDK V W
Sbjct: 61 EYIVAKATTEEKKLWFESSYLKAREVEKKATSGGPEMERMEDVKGQLGSMISKDKMRVIW 120
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHG-- 162
E +V+ + +RK F+LSYE D + EL E+I +E P K+ +IQ+
Sbjct: 121 EGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQVSSFF 180
Query: 163 -------------------PPMIYK---------------NDIHWVREVDFTPSSSVGKS 188
P I++ N W+R+VDFTPSS +G+S
Sbjct: 181 LSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQS 240
Query: 189 SAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
+CL+ H+P + L YK + F L GS F NS+L+P+
Sbjct: 241 FTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPI 287
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 41/296 (13%)
Query: 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH----AVVEFTTVEAA 57
K + +SGF + V+ +KD LE+ G G V V++ K + A+ A+V+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 DLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFW 104
L+++ A G++YLK +R RT + L +D L+FGC + + SV W
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNL-EDATLHFGCLLRERVLSVLW 121
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPP 164
S VSV+ ++K +F L+Y + ELS ESI +I+L+ P G K+L+IQ+ P
Sbjct: 122 SGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAP 181
Query: 165 MIYKNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
IY+ ++ W R DFTP +S+G+S +CLELP ++P
Sbjct: 182 KIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPN 241
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL--SFMGPEVGVSKLARILNVKRHG 257
+ YYK F + G +S NS +P+ S +V L +I N+ ++G
Sbjct: 242 IREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNG 297
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 41/296 (13%)
Query: 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH----AVVEFTTVEAA 57
K + +SGF + V+ +KD LE+ G G V V++ K + A+ A+V+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 DLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFW 104
L+++ A G++YLK +R RT + L +D L+FGC + + SV W
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNL-EDATLHFGCLLRERVLSVLW 121
Query: 105 SPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPP 164
S VSV+ ++K +F L+Y + ELS ESI +I+L+ P G K+L+IQ+ P
Sbjct: 122 SGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAP 181
Query: 165 MIYKNDI---------------------HWVREVDFTPSSSVGKSSAICLELPTRAHIPK 203
IY+ ++ W R DFTP +S+G+S +CLELP ++P
Sbjct: 182 KIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPN 241
Query: 204 ALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL--SFMGPEVGVSKLARILNVKRHG 257
+ YYK F + G +S NS +P+ S +V L +I N+ ++G
Sbjct: 242 IREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNG 297
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 132/274 (48%), Gaps = 42/274 (15%)
Query: 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEAAD 58
K + +SGFA S +KD LE G G V V++ K + +A+A+V+F T E A
Sbjct: 4 KTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHAS 63
Query: 59 LIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
L+ + A G+ YLK R R +KL +D+ L+FGC + + S WS
Sbjct: 64 LVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKL-EDVTLHFGCLLKETILSALWS 122
Query: 106 PENVSVKLCSDLRKFEFFLSY--ESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGP 163
+ VSV+ +L+K F+L S++ + ELS ESI +I+L P K+L+IQ+
Sbjct: 123 RKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRPPKSQTKFLLIQVQAA 182
Query: 164 PMIYKN---------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIP 202
P IY+ D W R DFT SSS+G+S +CLE+P R +P
Sbjct: 183 PKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLP 242
Query: 203 KALKDLFYYKESPVQFTLVPGSV-FSCNSDLIPL 235
FYY E F G +S ++ +P+
Sbjct: 243 NIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPI 276
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 131/274 (47%), Gaps = 42/274 (15%)
Query: 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEAAD 58
K + +SGFA S +KD LE G G V V++ K + +A+A+V+F T E A
Sbjct: 4 KTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHAS 63
Query: 59 LIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
L+ + A G+ YLK R R +KL +D+ L+FGC + + S WS
Sbjct: 64 LVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKL-EDVTLHFGCLLKETILSALWS 122
Query: 106 PENVSVKLCSDLRKFEFFLSY--ESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGP 163
VSV+ +L+K F+L S++ + ELS ESI +I+L P K+L+IQ+
Sbjct: 123 RTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQVQAA 182
Query: 164 PMIYKN---------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIP 202
P IY+ D W R DFT SSS+G+S +CLE+P R +P
Sbjct: 183 PKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCDLP 242
Query: 203 KALKDLFYYKESPVQFTLVPGSV-FSCNSDLIPL 235
FYY E F G +S ++ +P+
Sbjct: 243 NIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPI 276
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 131/275 (47%), Gaps = 41/275 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEA 56
+ + I + GFA S + +K FLE G GT+ +++ + + +A A+ +F + E+
Sbjct: 2 VGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQES 61
Query: 57 ADLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVF 103
A L+ + G YL+ R R P + L +D+ L+ GC + ++ S
Sbjct: 62 ASLVENATQRLVLKIGRFYLRTRPADRDIVPRPRIPMFSL-EDIVLHLGCLVKENILSAL 120
Query: 104 WSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHS--VKYLVIQLH 161
+ NVSV+ D++K F+LSY + ELS ESI +++LH P + ++L+IQ+
Sbjct: 121 FRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQVQ 180
Query: 162 GPPMIYK---------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAH 200
P IYK D W R +DFTPS+S+G+SS +
Sbjct: 181 AAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQCE 240
Query: 201 IPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
+P+ YYKE + F G +SC S L+P+
Sbjct: 241 LPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPI 275
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 130/277 (46%), Gaps = 64/277 (23%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE+HTG GTV +EV Q+K G +A A V+F +AD
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKASYVKRRTPHYKL----GDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K H + D + LNFGCQIS DKF+V S E V
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVHLRAYVDHMDGITLNFGCQISDDKFAVLGSTEVV 120
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
LH P G + ++L+IQL G P IYK
Sbjct: 121 -----------------------------------LHRPYGQNAQFLLIQLFGAPRIYKR 145
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DF P S +G SS++CL+ H+P + F+Y E
Sbjct: 146 LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQEIFFHYTEREN 204
Query: 217 QFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
TL G F S S L+P + P G++ +IL
Sbjct: 205 NITLQTGFTFFVSQKSALVP--NVQPPEGIAIPYKIL 239
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 131/277 (47%), Gaps = 64/277 (23%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE+HTG GTV +EV Q+K G +A A V+F +AD
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 130
Query: 60 IMSLA------GNSYLKA----SYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA + + + + D + LNFGCQIS DKF+V S E V
Sbjct: 131 IINLASKRLYFGSSYLKAWELETDIVQLWAYVDHMDGITLNFGCQISDDKFAVLGSTEVV 190
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
LH P G + ++L+IQL G P IYK
Sbjct: 191 -----------------------------------LHRPYGQNAQFLLIQLFGAPRIYKR 215
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DFTP S +G SS++CL+ H+P + F+Y E
Sbjct: 216 LENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYAEREN 274
Query: 217 QFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
TL G F S S L+P + P G++ +IL
Sbjct: 275 NITLQTGFTFFVSQKSALVP--NVQPPEGIAIPYKIL 309
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 129/277 (46%), Gaps = 64/277 (23%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK-GLKAHAVVEFTTVEAADL 59
M K I + GF +S + +K FLE+HTG GTV +EV Q+K G +A A V+F +AD
Sbjct: 27 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGSRAFAKVQFVDNISADK 86
Query: 60 IMSLA------GNSYLKASYVKRRTPHYKL----GDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K + D + LNFGCQIS DKF+V S E V
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKADIVQLRAYVDHMDGITLNFGCQISDDKFAVLGSTEVV 146
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN 169
LH P G + ++L+IQL G P IYK
Sbjct: 147 -----------------------------------LHRPYGQNAQFLLIQLFGAPRIYKR 171
Query: 170 -------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
D WVR DF P S +G SS++CL+ H+P + F+Y E
Sbjct: 172 LENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYTEREN 230
Query: 217 QFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
TL G F S S L+P + P G++ +IL
Sbjct: 231 NITLQTGFTFFVSQKSALVP--NVQPPEGIAIPYKIL 265
>gi|113205191|gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
Length = 190
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 12/171 (7%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + +S + +K FLE+HTG GT+ +EV Q+KG +A A V+F +AD
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IMSLA------GNSYLKASYVKRRTPHYKL----GDDLKLNFGCQISKDKFSVFWSPENV 109
I++LA G+SYLKA +K + D + LNFGCQIS+DKF+V S E V
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMDGITLNFGCQISEDKFAVLGSTE-V 119
Query: 110 SVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQL 160
S+K L+KF FFLS S D + +LS E+I Q+ LH P G + ++L+IQ+
Sbjct: 120 SIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQV 170
>gi|113205255|gb|ABI34312.1| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 241
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 11/170 (6%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + + +K FLE+HTG GTV ++V Q+KG +A A V+F +AD
Sbjct: 66 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 125
Query: 60 IMSLA------GNSYLKASYVKR---RTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVS 110
I++LA G+SYLKA +K + + D + LNFGCQIS DKF+V S E VS
Sbjct: 126 IINLASKRLYFGSSYLKAWEMKTDIVQVAYVDHMDGITLNFGCQISDDKFAVLGSTE-VS 184
Query: 111 VKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQL 160
+K L+K FFLS S D + +LS E+I Q+ LH P G + ++L+IQ+
Sbjct: 185 IKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQV 234
>gi|113205404|gb|ABI34379.1| RNA-directed RNA polymerase-like, putative [Solanum tuberosum]
Length = 274
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 11/170 (6%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + + +K FLE+HTG GTV ++V Q+KG +A A V+F +AD
Sbjct: 86 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 145
Query: 60 IMSLA------GNSYLKASYVKR---RTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVS 110
I++LA G+SYLKA +K + + D + LNFGCQIS DKF+V S E VS
Sbjct: 146 IINLASKRLYFGSSYLKAWEMKTDIVQVAYVDHMDGITLNFGCQISDDKFAVLGSTE-VS 204
Query: 111 VKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQL 160
+K L+K FFLS S D + +LS E+I Q+ LH P G + ++L+IQ+
Sbjct: 205 IKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQV 254
>gi|113205315|gb|ABI34338.1| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 215
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 11/170 (6%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADL 59
M K I + GF + + +K FLE+HTG GTV ++V Q+KG +A A V+F +AD
Sbjct: 27 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 86
Query: 60 IMSLA------GNSYLKASYVKR---RTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVS 110
I++LA G+SYLKA +K + + D + LNFGCQIS DKF+V S E VS
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKTDIVQVAYVDHMDGITLNFGCQISDDKFAVLGSTE-VS 145
Query: 111 VKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQL 160
+K L+K FFLS S D + +LS E+I Q+ LH P G + + L+IQ+
Sbjct: 146 IKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQSLLIQV 195
>gi|167405748|gb|ABZ79701.1| RNA-dependent RNA polymerase [Solanum lycopersicum]
Length = 163
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 12/164 (7%)
Query: 14 VSPKALKDFLEEHTGEGTVSDVEVGQNKG-LKAHAVVEFTTVEAADLIMSLA------GN 66
+S + + FLE++TG GT +EV Q+KG +A A V+F +AD I++LA G+
Sbjct: 1 LSAEVVLSFLEKYTGYGTSCALEVKQSKGGSRAFAKVQFADNISADKIITLANNRLYFGS 60
Query: 67 SYLKASYVK----RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEF 122
SYLKA +K + + D + LNFGCQIS DKF+V S E VS++ L+KF F
Sbjct: 61 SYLKAWEMKTDIVQLRAYVDQMDGITLNFGCQISDDKFAVLGSTE-VSIQFGIGLKKFFF 119
Query: 123 FLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMI 166
FLS S D + +LS E+I Q+ LH P G + ++L+IQL G P I
Sbjct: 120 FLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 163
>gi|413938755|gb|AFW73306.1| hypothetical protein ZEAMMB73_707398 [Zea mays]
Length = 208
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 20/179 (11%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEA 56
+ + I + GFA S +++K FLE G GT+ +++ + + +A A+V+F + E+
Sbjct: 2 VGRTIQVQGFALTDSAESVKLFLERIAGAGTICALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 ADLIMSLA-------GNSYLKASYVKR------RTPHYKLGDDLKLNFGCQISKDKFSVF 103
A L+ + A G YL+ R R P + L +D+ L+ GC + ++ S
Sbjct: 62 ASLVENAAQRQVLKIGRFYLRTRPADRDIVPRPRIPMFSL-EDIVLHLGCLVKENILSAL 120
Query: 104 WSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGH--SVKYLVIQL 160
+ NVSV+ D++K F+LSY + ELS ESI +++LH P + ++L+IQ+
Sbjct: 121 FRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQV 179
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 170 DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCN 229
D W R +DFTPS+S+G+SS +CLE+P + +P+ YYKE + F G +SC
Sbjct: 35 DEQWTRTIDFTPSASIGQSSILCLEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCG 94
Query: 230 SDLIPL 235
S+L+P+
Sbjct: 95 SNLVPI 100
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 41/271 (15%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEA---AD 58
+ +S + L FLE H GE TV +E+ N + A V+FTT+E A
Sbjct: 12 VKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRAQ 71
Query: 59 LIMSLAG------NSYLKASY---VKRRTPHYKLGDDLKLNFGCQISKDK-FSVFWSPEN 108
L+ S + N L +Y + R K DD+ L G S +K F +
Sbjct: 72 LLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWDG 131
Query: 109 VSVKLCSDLRKFEFFLSYESVDS-RFELSDESISQIELHIPSGHS--VKYLVIQLHGPPM 165
V + ++ R+ EF++ +ES D + E+ E I + +G + + +++L P
Sbjct: 132 VRCWILTEKRRVEFWV-WESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190
Query: 166 IYKN---------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKA 204
++K D W+R DF+ S S+G S+ CLE+ + +
Sbjct: 191 VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250
Query: 205 LKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
L YY+E + T V G F+ + ++PL
Sbjct: 251 FSGLPYYREDTLSLTYVDGKTFASAAQIVPL 281
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 37/254 (14%)
Query: 19 LKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSY 68
L +FL G +V +E+ +N + V+FTT+EA MSL+ G
Sbjct: 23 LLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMSLSVQNSLVFGTQN 82
Query: 69 LKASYVK-----RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFF 123
L+ S + R ++ L+ G + +++ SV S E V + + R+ EF+
Sbjct: 83 LRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEGVKAWIMPERRRIEFW 142
Query: 124 LSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN-------------- 169
+ +E + E+ E I + H + L+++L P IYK
Sbjct: 143 IWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISGSNMASRFSSTR 202
Query: 170 --------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLV 221
D WVR +F+P SVG+S++ C E+ +YKE+ L
Sbjct: 203 YRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKETQKDIVLE 262
Query: 222 PGSVFSCNSDLIPL 235
G F S+++PL
Sbjct: 263 DGEEFCSTSEIVPL 276
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 37/254 (14%)
Query: 19 LKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSY 68
L +FL G +V +E+ +N + V+FTT+EA MSL+ G
Sbjct: 23 LLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMSLSVQNSLVFGTQN 82
Query: 69 LKASYVK-----RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFF 123
L+ S + R ++ L+ G + +++ SV S E V + + R+ EF+
Sbjct: 83 LRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEGVKAWIMPERRRIEFW 142
Query: 124 LSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN-------------- 169
+ +E + E+ E I + H + L+++L P IYK
Sbjct: 143 IWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISGSNMASRFSSTR 202
Query: 170 --------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLV 221
D WVR +F+P SVG+S++ C E+ +YKE+ L
Sbjct: 203 YRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKETQKDIVLE 262
Query: 222 PGSVFSCNSDLIPL 235
G F S+++PL
Sbjct: 263 DGEEFCSTSEIVPL 276
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 104/275 (37%), Gaps = 59/275 (21%)
Query: 19 LKDFLEEHTGEGTVSDVEVGQ---NKGLKAHAVVEFTTVEAADLIMSLAG-NSYLKASYV 74
L + LE G GTV + N + +A V+F T EA+ L LA N+ L
Sbjct: 17 LVECLESVCGRGTVVSCSIDTAHANWMSRGYAFVQFATAEASQLASQLAAENALLFYGRA 76
Query: 75 KRRTPHYKL------GDD----LKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFL 124
R H + GD+ + L G + WS V+ + C + L
Sbjct: 77 LRIQAHKGVTHGPIRGDERVEGIVLTMGFARGESGIDCLWSCSGVAAEFCFGSCQLNLLL 136
Query: 125 SYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKN--------------- 169
++ VD + EL ++ ++ + + + +L++QL PP++++
Sbjct: 137 QHDGVDYKLELLFRNLRFVDAFVETSQA-SHLLLQLFRPPLVFQGLPSPSEQGNPVLDTP 195
Query: 170 ------------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+ W R DFTP ++ +S CLE P+ +AL
Sbjct: 196 LAILRHFKAVRANSYNYKYSKFAKEPTWTRSTDFTPGKAISQSLVYCLEFPSDLSDEQAL 255
Query: 206 ---KDLFYYKESPVQ--FTLVPGSVFSCNSDLIPL 235
K L Y S + TLV G ++ +L P+
Sbjct: 256 KISKSLSGYDTSSMDRALTLVAGESYALQQELSPI 290
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 40/271 (14%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEA---AD 58
+ +S + L FLE + GE TV +E+ N + A V+FTT+E A
Sbjct: 12 LKISNVPQTIVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSRAQ 71
Query: 59 LIMSLAG------NSYLKASY---VKRRTPHYKLGDDLKLNFGCQISKDK-FSVFWSPEN 108
L+ S + N L +Y + R + DD+ L G S +K F +
Sbjct: 72 LLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKWDG 131
Query: 109 VSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHS--VKYLVIQLHGPPMI 166
V + + R+ EF++ + E+ E I + +G + +++L P +
Sbjct: 132 VRCWILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASETNAFLLKLKYGPKV 191
Query: 167 YKN----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKA 204
+K D W+R DF+ S+G S+ CLE+ + +
Sbjct: 192 FKRVSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFCLEVHNGSTMLDV 251
Query: 205 LKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
L YY+E + T V G F+ S ++PL
Sbjct: 252 FSGLPYYREETLSLTFVDGKNFASVSQIVPL 282
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 35/227 (15%)
Query: 44 KAHAVVEFTTVEAADLIMSLAGNS----YLKASYVKRR--TPHYKL-GDD----LKLNFG 92
+ +A V+F T EA+ L LA + Y +A ++ R H + GD+ + L G
Sbjct: 3 RGYAFVQFATAEASQLASQLAAENALLFYGRALRIQARKAVTHGPIRGDERVEGIVLTMG 62
Query: 93 CQISKDKFSVFWSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHS 152
+ WS V+ + C + L ++ VD + EL ++ ++ + + +
Sbjct: 63 FARGESGIDCLWSCSGVAAEFCFGSCQLNLLLQHDGVDYKLELLFRNLRFVDAFVETSQA 122
Query: 153 VKYLV-IQLHGPPMI------------------YKNDIHWVREVDFTPSSSVGKSSAICL 193
L+ + L P I + + W R DFTP ++ +S CL
Sbjct: 123 SHLLLQVMLDTPLAILRHFKAVRSNSYNYKYSKFAKEPTWTRSTDFTPGKAISQSLVYCL 182
Query: 194 ELPTRAHIPKAL---KDLFYYKESPVQ--FTLVPGSVFSCNSDLIPL 235
E P+ +AL K L Y S + TLV G ++ +L P+
Sbjct: 183 EFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQELSPI 229
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEAA 57
++ + +S + K L DFLE G TV +E+ N + V+F T++A
Sbjct: 9 LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68
Query: 58 DLIMSLAGNSYL------------KASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
+SL+ ++L A + R P ++L + + L G +S + SV S
Sbjct: 69 SRALSLSQLNHLLFHRHFLRLSETDADIIFR--PQHRLHNGV-LYAGFVLSDHRMSVLES 125
Query: 106 PENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELH---IPSGHSVKYLVIQLHG 162
E V+ + ++ +F++ + R E E I +E H + + L++++
Sbjct: 126 WEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDI--LESHGYCLGEDAKLNALLLKMKF 183
Query: 163 PPMIYKN----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAH 200
P IYK + WVR DF+P S+G S++ C E+
Sbjct: 184 GPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHL 243
Query: 201 IPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
K YKE+ L G F +++ +PL
Sbjct: 244 ALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPL 278
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 159 QLHGPPMIYKN-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
QL G P IYK D WVR DFTPS +G SS++CL+ H+P
Sbjct: 17 QLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 206 KDLFYYKESPVQFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
+ F+Y E TL G F S S L+P + P G++ +IL
Sbjct: 76 ESFFHYAERENNITLQTGFTFFVSQKSALVP--NVQPPEGIAIPYKIL 121
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 42/270 (15%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVG---QNKGLKAHAVVEFTTVEA---AD 58
+ +S K L FLE G T+ +E+ +N + V+F T++A AD
Sbjct: 9 VKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAAD 68
Query: 59 LIMSLAGNSYLKAS-----------YVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPE 107
L +SL G+ + S V+ P ++ D L+ G + D V S E
Sbjct: 69 L-LSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQV-DSGVLHVGFLVEDDCMLVLESWE 126
Query: 108 NVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY 167
V + + + EF++ + + E+ + + + G V L+++L P I+
Sbjct: 127 GVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIF 186
Query: 168 KN----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+ + W+R DF+ S+G+S++ C E+
Sbjct: 187 QKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIF 246
Query: 206 KDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
YYK+ + TL G F +S L+PL
Sbjct: 247 ASFPYYKDL-TELTLEQGEGFCSDSGLVPL 275
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 94/255 (36%), Gaps = 77/255 (30%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG-------------EGTVSDVEVGQN---------KG 42
+++ GF + K L D+LE+ G G+ + E+ K
Sbjct: 15 VSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIADTSSIPKFDDYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-------------KASYV----KRRTPHYKLGD 85
++ HA V F E+A M AG L K Y +R T YKL
Sbjct: 75 VEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLNQRRRTTTPYKLA- 133
Query: 86 DLKLNFGCQISKDKFSVFWSPENV---------SVKLCSDLRKFEFFLSYESV------- 129
+ L G +S+D+F V W + V + K C RK F ++V
Sbjct: 134 GISLEIGTLVSRDEFLVSWRADGVDFLVDPFDNTCKFC--FRKSTAFSFKDAVMHAVINC 191
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + EL I + + S V L++QL P ++ +DIH
Sbjct: 192 DYKLELLVRDIQTVRQYKNSHGYV--LILQLASSPRVWYRTADDDIHDTIPVDLLDDDDP 249
Query: 173 WVREVDFTPSSSVGK 187
W+R DFT ++G+
Sbjct: 250 WIRTTDFTQVGAIGR 264
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 159 QLHGPPMIYKN-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+L G P IYK D WVR DF PS +G SS++CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 206 KDLFYYKESPVQFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
+ F+Y E TL G F S S L+P + P G++ +IL
Sbjct: 76 EKFFHYAERENNITLQTGFTFFISQKSSLVP--NVQPPEGIAIPYKIL 121
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 159 QLHGPPMIYKN-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+L G P IYK D WVR DF PS +G SS++CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 206 KDLFYYKESPVQFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
+ F+Y E TL G F S S L+P + P G++ +IL
Sbjct: 76 ESFFHYAERENNITLQTGFTFFISQKSALVP--NVQPPEGIAIPYKIL 121
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 159 QLHGPPMIYKN-------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+L G P IYK D WVR DF PS +G SS++CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 206 KDLFYYKESPVQFTLVPGSVF--SCNSDLIPLSFMGPEVGVSKLARIL 251
+ F+Y E TL G F S S L+P + P G++ +IL
Sbjct: 76 ESFFHYAERENNITLQTGFTFFISQKSALVP--NVQPPEGIAIPYKIL 121
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 115/294 (39%), Gaps = 84/294 (28%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG------------------EGTVSDV----EVGQNKG 42
I++ GF S V L ++LE+ G E + D K
Sbjct: 15 ISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDTAKIRRTEDYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAG-------NSYLKAS----------YVKRRTPHYKLGD 85
++ HA V F + E+ ++ +G N LK S +R T +K+ D
Sbjct: 75 VEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRTTTPFKMSD 134
Query: 86 DLKLNFGCQISKDKFSVFWSPENVSVKLCSD----LRKFEF----FLSYESVDSR----- 132
L + G +S +F V W + VK D + +F F S++ +D +
Sbjct: 135 VL-VEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKC 193
Query: 133 -----FELSDESISQIELHIPSGHSVKYLVIQLH---GPPMIYK---NDIH--------- 172
F + D I++I + + YLV+ LH P + Y+ +DI
Sbjct: 194 DFQVGFLVRD--INEIRRY----NDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLD 247
Query: 173 ----WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVP 222
W+R DFTPS ++G+ + + +P R H K +K + Y K VQ +P
Sbjct: 248 DDDPWIRTTDFTPSGAIGRCNFYRISIPPR-HGAKLMKAMLYLKGQRVQIQELP 300
>gi|224141777|ref|XP_002324241.1| predicted protein [Populus trichocarpa]
gi|222865675|gb|EEF02806.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 11/66 (16%)
Query: 214 SPVQFTLVPGSVFSCNSDLIPLSFM--------GPEVGVSKLARILNVKRHGGAHHARSN 265
S FT + G VF D++ + +M G E+G++ +A+ILNV+R GGAHHA S+
Sbjct: 157 SVAGFTSLLGIVFG---DVVDIKYMARFCQGLRGGELGLAAIAKILNVERVGGAHHAGSD 213
Query: 266 SLLTSQ 271
SLLT++
Sbjct: 214 SLLTAR 219
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 111/285 (38%), Gaps = 76/285 (26%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG------------------EGTVSDV----EVGQNKG 42
++L GF V+ K L ++LE G ++D+ +
Sbjct: 15 VSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDYRR 74
Query: 43 LKAHAVVEFT-------TVEAADLIMSLAGNSYLKASY----------VKRRTPHYKLGD 85
++ HA V F ++AAD N LKAS +R+T +KL
Sbjct: 75 VEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSG 134
Query: 86 DLKLNFGCQISKDKFSVFW-----------SPENVSVKLC-SDLRKFEFFLSYE----SV 129
+ + G +S+D+F V W P + + + C S F F + E
Sbjct: 135 -VGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKC 193
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + E I++I+ + + S L++QL P ++ +DI
Sbjct: 194 DFKVEFLVRDINEIKQYTET--SCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDP 251
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQ 217
W+R DFT S ++G+ + + +P R H PK K + + KE VQ
Sbjct: 252 WIRTTDFTASGAIGRCHSYRVSIPPR-HGPKLRKAVDFLKERRVQ 295
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 43/264 (16%)
Query: 11 ASPVSPKALKDFLEEHTGEGTVSDVE-VGQNKGL--KAHAVVEFTTVEAADLIMSLAGNS 67
AS ++ + L F T G E V ++G + H V+F + AA + LA +
Sbjct: 21 ASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAATHAIDLASSG 80
Query: 68 YL-------------KASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLC 114
L +A + R L G ++++ + V +S + V ++
Sbjct: 81 RLPPFLGSCLSVSPARADLLPRAPDLSLRAASASLILGNRVAERELEVAYSCDGVRAEVI 140
Query: 115 SDLRKFEFFLSYESVDSRFELSDESISQ-IELHIPSGHSVKYLVIQLHGPPMIY------ 167
+R+ + +L ++S + E+ E I++ H+ ++ ++QL P I+
Sbjct: 141 PRMRRVDLYLKHDSQSYKLEVLFEDINECFGCHLDGTGAI---LLQLTYAPRIHIAISGS 197
Query: 168 --------------KND--IHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYY 211
K D WVR +DFTP+SS G+ S + L+L A + L+ L +
Sbjct: 198 TVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFS 257
Query: 212 KESPVQFTLVPGSVFSCNSDLIPL 235
E + + VF +S+++PL
Sbjct: 258 GELG-ELAIASMDVFGSSSNVVPL 280
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 109/288 (37%), Gaps = 82/288 (28%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG------------------EGTVSDV----EVGQNKG 42
I++ GF S V L ++LE+ G E + D K
Sbjct: 15 ISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTANIRRTDNYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAG-------NSYLKAS----------YVKRRTPHYKLGD 85
++ HA V F + E+ ++ +G N LK S +R T +K+ D
Sbjct: 75 VEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRTTTPFKMSD 134
Query: 86 DLKLNFGCQISKDKFSVFWSPENVSVKLCSD----LRKFEFFLSYESVDSRFELSD-ESI 140
L + G +S +F V W + VK D + +F F S D+ F E
Sbjct: 135 VL-VEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCF-----SRDTAFSFKGIEKK 188
Query: 141 SQIELHIPSGHSVK------------YLVIQLH---GPPMIYK---NDIH---------- 172
+ I+ G V+ YLV+ LH P + Y+ +DI
Sbjct: 189 AVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDD 248
Query: 173 ---WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQ 217
W+R DFTPS ++G+ + + +P R H K +K + Y K VQ
Sbjct: 249 DDPWIRTTDFTPSGAIGRCNFYRISIPPR-HGAKLMKAMLYLKGQRVQ 295
>gi|224097604|ref|XP_002334600.1| predicted protein [Populus trichocarpa]
gi|222873440|gb|EEF10571.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 190 AICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDLIPLSFMGPEVGVSKLAR 249
A L L A+IP + S +FT + G+VF + D+ E+G+SKLA
Sbjct: 21 ATSLGLYDLAYIPGLITHC-----SIARFTSLLGTVFDRDVDV--------ELGLSKLAN 67
Query: 250 ILNVKRHGGAHHARSNSLLT 269
IL ++R GGAH A S+SLLT
Sbjct: 68 ILRIEREGGAHQAGSDSLLT 87
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 77/255 (30%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG-------------EGTVSDVEVG---------QNKG 42
+++ GF + K L D+LE+ G G+ + E+ + K
Sbjct: 15 VSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSIDEYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-------------KASYV----KRRTPHYKLGD 85
++ HA V F E+A M AG L K Y +R T YKL
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLA- 133
Query: 86 DLKLNFGCQISKDKFSVFWSPENV---------SVKLCSDLRKFEFFLSYESV------- 129
+ L G +S+D F V W E V + K C RK F ++V
Sbjct: 134 GITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFC--FRKSTAFSFKDAVMHAVINC 191
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + EL I + + + H L++QL P ++ +DI+
Sbjct: 192 DYKLELLVRDIQTVRQY-KTLHGF-VLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP 249
Query: 173 WVREVDFTPSSSVGK 187
W+R DFT ++G+
Sbjct: 250 WIRTTDFTQVGAIGR 264
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 77/255 (30%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG-------------EGTVSDVEVG---------QNKG 42
+++ GF + K L D+LE+ G G+ + E+ + K
Sbjct: 15 VSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSIDEYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-------------KASYV----KRRTPHYKLGD 85
++ HA V F E+A M AG L K Y +R T YKL
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLA- 133
Query: 86 DLKLNFGCQISKDKFSVFWSPENV---------SVKLCSDLRKFEFFLSYESV------- 129
+ L G +S+D F V W E V + K C RK F ++V
Sbjct: 134 GITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFC--FRKSTAFSFKDAVMHAVINC 191
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + EL I + + + H L++QL P ++ +DI+
Sbjct: 192 DYKLELLVRDIQTVRQY-KTLHGF-VLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP 249
Query: 173 WVREVDFTPSSSVGK 187
W+R DFT ++G+
Sbjct: 250 WIRTTDFTQVGAIGR 264
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 38/275 (13%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVG---QNKGLKAHAVVEFTTVEAAD--L 59
+ ++ ++ K + +L G+ +V +E+ +N + V+F+++E L
Sbjct: 10 VRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEAL 69
Query: 60 IMSLAGNSYLKASYVK----------RRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENV 109
+SL LK+ +K R ++ L G + V E V
Sbjct: 70 SLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEGV 129
Query: 110 SVKLCSDLRKFEFFLSY-ESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYK 168
+ R+ EF++ + + + E I + + G V +V++L P IY+
Sbjct: 130 RGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIYQ 189
Query: 169 N----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALK 206
D WVR D + S+G+S++ C E+ +
Sbjct: 190 KISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFR 249
Query: 207 DLFYYKESPVQFTLVPGSVFSCNSDLIPLSFMGPE 241
+ YY+E + L G F S+ +PL G +
Sbjct: 250 NFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD 284
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 88/223 (39%), Gaps = 56/223 (25%)
Query: 46 HAVVEFTTVEAADLIMSLAG-------NSYLKASY----------VKRRTPHYKLGDDLK 88
HA V F ++A L M+ +G N LK S +R T +KL D +
Sbjct: 78 HAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSD-VG 136
Query: 89 LNFGCQISKDKFSVFW-----------SPENVSVKLCSDLRKFEFFLSYES------VDS 131
G +S+D+F V W P + + K C R F L S D
Sbjct: 137 FEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFS-RNTAFSLKSTSEHAVIKCDF 195
Query: 132 RFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH-------------WV 174
+ E I++I + + S L++QL P ++ +DI W+
Sbjct: 196 KVEFLVRDINEIIQYTET--SCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWI 253
Query: 175 REVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQ 217
R DFT S ++G+ + + +P R H K K + Y KE VQ
Sbjct: 254 RTTDFTASGAIGRCHSYRVSIPPR-HGSKLRKAVKYLKERRVQ 295
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 170 DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCN 229
D WVR DF+ SVG+S++ C E+ K YY E+ + L G +
Sbjct: 60 DFIWVRTTDFSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSA 119
Query: 230 SDLIPLSFMGPE 241
S+++PL G +
Sbjct: 120 SEIVPLVKCGSD 131
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 106/273 (38%), Gaps = 41/273 (15%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV-GQNKGLKAHAV--VEFTTVEAA 57
++ + +S + K L DFLE G TV +E+ N K+ V+F T++A
Sbjct: 8 LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67
Query: 58 DLIMSLA-------GNSYLKASYVKRRT---PHYKLGDDLKLNFGCQISKDKFSVFWSPE 107
+SL+ +L+ S P ++L + + L G +S + SV S E
Sbjct: 68 SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGV-LYAGFMLSDHRMSVLESWE 126
Query: 108 NVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELH---IPSGHSVKYLVIQLHGPP 164
++ + ++ +F++ + R E E I +E H + + L++++ P
Sbjct: 127 GIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDI--LESHGYCLGEDARLNALLLKMKFGP 184
Query: 165 MIYKN----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIP 202
IYK + WVR DF+P S+G S++ C E+
Sbjct: 185 RIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLAS 244
Query: 203 KALKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
YKE+ L ++ +PL
Sbjct: 245 DVFTSFPLYKENLRDLALEDREELCSLTEAVPL 277
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 76/285 (26%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEG------------------TVSDVEVGQN----KG 42
++ GF V+ + L +L+ G+ ++D V Q +
Sbjct: 15 VSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDAYRR 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-----------------KASYVKRRTPHYKLGD 85
++ HA V F + ++A + AG+ L + +R T +KL D
Sbjct: 75 VEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSD 134
Query: 86 DLKLNFGCQISKDKFSVFW-----------SPENVSVKLC-SDLRKFEFFLSYE----SV 129
+ + G +S+D+F V W P + K C + F F + E
Sbjct: 135 -VHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRC 193
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + E I++I+ + + S +++QL P ++ +DI
Sbjct: 194 DFKLEFLVRDINEIKQYTDT--SCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDP 251
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQ 217
W+R DFTPS ++G+ ++ + +P R H K + L + +E VQ
Sbjct: 252 WIRTTDFTPSGAIGRCNSYRVSIPPR-HGAKLKRALNFLRERRVQ 295
>gi|224143029|ref|XP_002324825.1| predicted protein [Populus trichocarpa]
gi|222866259|gb|EEF03390.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 11/62 (17%)
Query: 218 FTLVPGSVFSCNSDLIPLSFM--------GPEVGVSKLARILNVKRHGGAHHARSNSLLT 269
FT + G VF D++ + +M G E+G++ +A+IL V+R GGAH A S+SLLT
Sbjct: 174 FTSLLGIVFG---DVVDIKYMARFCQGLRGGELGLAAIAKILKVERVGGAHQAGSDSLLT 230
Query: 270 SQ 271
++
Sbjct: 231 AR 232
>gi|15218371|ref|NP_173044.1| putative CCR4-associated factor 1-2 [Arabidopsis thaliana]
gi|42571495|ref|NP_973838.1| putative CCR4-associated factor 1-2 [Arabidopsis thaliana]
gi|75336876|sp|Q9S9P2.1|CAF1B_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 2
gi|6587798|gb|AAF18489.1|AC010924_2 Similar to gi|Q60809 CCR4-associated factor 1 (CAF1) from Mus
musculus. EST gb|Z26822 comes from this gene
[Arabidopsis thaliana]
gi|19347887|gb|AAL86000.1| putative BTG1 binding factor 1 [Arabidopsis thaliana]
gi|21281271|gb|AAM45088.1| putative BTG1 binding factor 1 [Arabidopsis thaliana]
gi|222423866|dbj|BAH19897.1| AT1G15920 [Arabidopsis thaliana]
gi|332191262|gb|AEE29383.1| putative CCR4-associated factor 1-2 [Arabidopsis thaliana]
gi|332191263|gb|AEE29384.1| putative CCR4-associated factor 1-2 [Arabidopsis thaliana]
Length = 286
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 116 DLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDIHWVR 175
+ R+F ++DS EL +S +E + G K L G ++ + IHWV
Sbjct: 112 NFREFNVISDMFALDS-IELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWV- 169
Query: 176 EVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKES--PVQFTLVPGSVFSCNSDLI 233
+ G L+L + +P+ + D F E PV + + F N
Sbjct: 170 ------TFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTN---- 219
Query: 234 PLSFMGPEVGVSKLARILNVKRHGGAHHARSNSLLT 269
G G+ K+A +L VKR G +H A S+SLLT
Sbjct: 220 ---LYG---GLEKIAELLGVKRVGISHQAGSDSLLT 249
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 40/253 (15%)
Query: 22 FLEEHTGEGTVSDVEVGQN-KGLKAHAV--VEFTTVEAADLIMSLAGNSYLKAS------ 72
+LE G +V +E+ + K+ V V+F T+EA ++LA N L S
Sbjct: 28 YLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKALTLAENKKLLLSSHFLCL 87
Query: 73 -------YVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFLS 125
+ P ++ + L G I D SV S E V + + ++ +F+++
Sbjct: 88 DASSDDIIPRPALPRNRINNG-ALYAGFPIGPDCMSVLQSWEGVRGWVMPERQRLDFWVT 146
Query: 126 YESVDSRFELSDESISQIELHIPS-GHSVKYLVIQLHGPPMIYKN--------------- 169
+ + E+ E+I + + + G L+++L P IY+
Sbjct: 147 HGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRY 206
Query: 170 -------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVP 222
+ WVR DF+ S+G S++ E+ + + Y+E+ +L
Sbjct: 207 RFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYRENLKDLSLED 266
Query: 223 GSVFSCNSDLIPL 235
G F ++ +PL
Sbjct: 267 GEKFCSPTETVPL 279
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 73/253 (28%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGE-------------GTVSDVEVGQN---------KG 42
+++ GF + K L D+LE G G+ + E+ K
Sbjct: 15 VSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRNFNDYKR 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-----------------KASYVKRRTPHYKLGD 85
++ HA V F + E+A M AG L + +R T KL
Sbjct: 75 VEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSLGPENPYTLNQRRRTTTPLKLS- 133
Query: 86 DLKLNFGCQISKDKFSVFWSPENVS--VKLCSDLRKFEFFLSYE------------SVDS 131
+ + G +S+D+F V W E V V + +F F S + D
Sbjct: 134 GISVEIGTLVSRDEFLVSWRAEKVDFLVDPFDNTCRFCFTKSTAFSLKDTMRHAVINCDY 193
Query: 132 RFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH-------------WV 174
+ EL I + + S V L++QL P ++ +DI+ W+
Sbjct: 194 KLELLVRDIRTVRQYRASDGFV--LLLQLASSPRVWYRTADDDIYETCPVDLLDDDDPWI 251
Query: 175 REVDFTPSSSVGK 187
R DFT + ++G+
Sbjct: 252 RTTDFTQAGAIGR 264
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 107/285 (37%), Gaps = 78/285 (27%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG------------------EGTVSDVEVGQNKG---- 42
+++ GF V + L +LE G ++D V Q K
Sbjct: 15 VSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKDNYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAG-------NSYLKAS-------YVKRR---TPHYKLGD 85
++ HA V F + +A + AG N LK S Y+ RR T +KL
Sbjct: 75 VEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFKL-P 133
Query: 86 DLKLNFGCQISKDKFSVFW-----------SPENVSVKLC-SDLRKFEFFLSYE----SV 129
D+ L G S D+F V W P + + K C S F F + E
Sbjct: 134 DVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIKC 193
Query: 130 DSRFELSDESISQIELHI-PSGHSVKYLVIQLHGPPMIY-----------------KNDI 171
D + E I++++ + P+G V ++QL P ++ +D
Sbjct: 194 DFKVEFLVREINEVKQYSEPTGFVV---LLQLASSPWVWYRTADDDFEKTVPFGLLDDDD 250
Query: 172 HWVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPV 216
W+R DFT S ++G+ + + + R H K K + Y +E V
Sbjct: 251 QWIRTTDFTASGAIGRCNTYRVLVRPR-HGLKLKKAMDYLRERRV 294
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDL 232
WVR +DFTP+SS G+ S + L+L A + L+ L + E + + VF +S++
Sbjct: 13 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELG-ELAIASMDVFGSSSNV 71
Query: 233 IPL 235
+PL
Sbjct: 72 VPL 74
>gi|428203977|ref|YP_007082566.1| threonyl-tRNA synthetase [Pleurocapsa sp. PCC 7327]
gi|427981409|gb|AFY79009.1| threonyl-tRNA synthetase [Pleurocapsa sp. PCC 7327]
Length = 628
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 66 NSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFLS 125
+YL+ +R H KLG +LKL F Q VFW P +++ E +
Sbjct: 218 EAYLQKKEEAKRRDHRKLGKELKL-FSIQEDAGGGLVFWHPRGATMRCI-----IEDYWR 271
Query: 126 YESVDSRFE-LSDESISQIELHIPSGH----------SVK-----YLVIQLHGP--PMIY 167
+D+ +E L I+ +EL SGH S+K Y + ++ P +IY
Sbjct: 272 KAHLDAGYELLYTPHIANLELWKTSGHVDFYRENMFDSMKIEEQAYQIKPMNCPFHVLIY 331
Query: 168 KNDIHWVREV 177
KND+H RE+
Sbjct: 332 KNDLHSYREL 341
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDL 232
WVR +DFTP+SS G+ S + L+L A + L+ L + E + + VF +S++
Sbjct: 36 WVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELG-ELAIASMDVFGSSSNV 94
Query: 233 IPL 235
+PL
Sbjct: 95 VPL 97
>gi|15221481|ref|NP_172133.1| putative CCR4-associated factor 1-1 [Arabidopsis thaliana]
gi|75337235|sp|Q9SHJ0.1|CAF1A_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 1
gi|6692686|gb|AAF24820.1|AC007592_13 F12K11.20 [Arabidopsis thaliana]
gi|26451267|dbj|BAC42735.1| putative CCR4-associated factor [Arabidopsis thaliana]
gi|28973249|gb|AAO63949.1| putative CCR4-associated factor [Arabidopsis thaliana]
gi|332189867|gb|AEE27988.1| putative CCR4-associated factor 1-1 [Arabidopsis thaliana]
Length = 360
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 238 MGPEVGVSKLARILNVKRHGGAHHARSNSLLTS 270
+G +G+SKLA++L + R G AHHA S+SL+T+
Sbjct: 199 LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTA 231
>gi|297843446|ref|XP_002889604.1| hypothetical protein ARALYDRAFT_887848 [Arabidopsis lyrata subsp.
lyrata]
gi|297335446|gb|EFH65863.1| hypothetical protein ARALYDRAFT_887848 [Arabidopsis lyrata subsp.
lyrata]
Length = 355
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 238 MGPEVGVSKLARILNVKRHGGAHHARSNSLLTS 270
+G +G+SKLA++L + R G AHHA S+SL+T+
Sbjct: 199 LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTA 231
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 77 RTPHYKL-GDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFLSYESVDSRFEL 135
R P L D L G ++++ + +S + V ++ R+ + +L +S + E+
Sbjct: 102 RAPDLSLRAADAGLILGNRVAERELEAAYSWDGVRAEVIPRKRRVDLYLKQDSRSYKLEV 161
Query: 136 SDESISQ-IELHIPSGHSVKYLVIQLHGPPMIY--------------------KND--IH 172
E I + H+ ++ ++QL P IY K D
Sbjct: 162 LFEDIRECFGCHLDGTGAI---LLQLTYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFA 218
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKESPVQFTLVPGSVFSCNSDL 232
WVR +DFTP++S G+ S + L+L + L+ L + E + + F +S++
Sbjct: 219 WVRALDFTPNNSFGECSTLVLKLSKGVPVSDILESLPFSGELE-ELAISSMLAFGSSSNV 277
Query: 233 IPL 235
+PL
Sbjct: 278 VPL 280
>gi|255559993|ref|XP_002521015.1| ccr4-associated factor, putative [Ricinus communis]
gi|223539852|gb|EEF41432.1| ccr4-associated factor, putative [Ricinus communis]
Length = 161
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 241 EVGVSKLARILNVKRHGGAHHARSNSLLTSQ 271
E G+ KLA+++ V+R G AH A S+SLLTSQ
Sbjct: 70 EFGMQKLAKVMEVERVGMAHQAGSDSLLTSQ 100
>gi|384474658|emb|CCG85359.1| DNA [Saccharopolyspora rectivirgula]
Length = 331
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 34 DVEVGQNKGLKAHAVVE---------FTTVEAADLIMSLAGNSYLKASYVKRRTPHYKLG 84
DV +G ++G K+ A E VE ADLIM LA ++ + Y K P+ K G
Sbjct: 43 DVRIGLHEGSKSKAKAEEEGLRVLPTAEAVEEADLIMILAPDTKQREIYAKEVAPNLKKG 102
Query: 85 DDLKLNFGCQISKDKFSVFWSPENVSVKLCS 115
D L G I ++ + P +V V + +
Sbjct: 103 DALFFGHGFNI---RYGLIQPPADVDVAMVA 130
>gi|126658692|ref|ZP_01729837.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
gi|126619954|gb|EAZ90678.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
Length = 642
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 24/129 (18%)
Query: 66 NSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFLS 125
++YLK +R H KLG +LKL F Q VFW P +++ E +
Sbjct: 232 DAYLKQQEEAKRRDHRKLGKELKL-FSIQEGAGGGLVFWHPRGATMRYI-----IEDYWR 285
Query: 126 YESVDSRFE-LSDESISQIELHIPSGH---------------SVKYLVIQLHGP--PMIY 167
+D +E L ++ +EL SGH Y + ++ P + Y
Sbjct: 286 KAHLDGGYELLYTPHVANLELWKTSGHFDFYRENMFDSMDIEEQAYQIKPMNCPFHVLTY 345
Query: 168 KNDIHWVRE 176
KND+H RE
Sbjct: 346 KNDLHSYRE 354
>gi|441499867|ref|ZP_20982039.1| DNA-directed RNA polymerase beta' subunit [Fulvivirga imtechensis
AK7]
gi|441436327|gb|ELR69699.1| DNA-directed RNA polymerase beta' subunit [Fulvivirga imtechensis
AK7]
Length = 1435
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEF-------TTVEA 56
+I P + L+ F H G GT S++ V N K ++EF TT +
Sbjct: 926 VIAAQSIGEPGTQLTLRTF---HVG-GTASNIAVDANIKAKFEGIIEFEGIRTIKTTNKD 981
Query: 57 ADLIMSLAGNS-YLKASYVKRRT----PHYKLGDDLKLNFGCQISKDKFSVFWSPENVSV 111
D + + G + +K K++T H G LK+ G ++ K + V+W P N +
Sbjct: 982 GDNVEVVMGRTGEIKVIDEKKKTVMMTNHVPYGSFLKVKDGQKVEKGQELVYWDPYNAVI 1041
Query: 112 KLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYL 156
L +F+ + +ES+ +ES Q +GH K +
Sbjct: 1042 -----LSEFDGTIEFESIIEGITYKEESDEQ------TGHREKVI 1075
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like
[Brachypodium distachyon]
Length = 1140
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 44 KAHAVVEFTTVEAADLIMSLAGNSYLK-------------ASYVKRRTPHYKLGDDLKLN 90
+ H V+F + A L LA + L A + R +L
Sbjct: 57 RGHGTVQFDSAATASLAAELASSGRLPRFLGSPLSVSPAPADLLPRAPAPSLRASGARLL 116
Query: 91 FGCQISKDKFSVFWSPENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSG 150
G ++++ + + + + V V++ R+ + +L+++S + E+ E I G
Sbjct: 117 VGNRVAERELEMAETLDGVRVEVIPGKRRVDLYLTHDSHRYKLEVLFEDIRNCFRCSLDG 176
Query: 151 HSVKYLVIQLHGPPMI------------YKND-IH---------WVREVDFTPSSSVGKS 188
S +++QL P I +K+D +H WVR +DFTP+ S GK
Sbjct: 177 TSA--ILLQLTYAPRIHTAFSGPAVYSRFKDDRLHACKEDAKFTWVRALDFTPNQSFGKC 234
Query: 189 SAICLELPTRAHIPKALKDL 208
S + ++L A + L L
Sbjct: 235 STLVIKLDEDALMSYILNTL 254
>gi|313677114|ref|YP_004055110.1| DNA-directed RNA polymerase subunit beta' [Marivirga tractuosa DSM
4126]
gi|312943812|gb|ADR23002.1| DNA-directed RNA polymerase subunit beta' [Marivirga tractuosa DSM
4126]
Length = 1432
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTV--------- 54
+I P + L+ F H G GT S++ V K +VEF +
Sbjct: 926 VIAAQSIGEPGTQLTLRTF---HVG-GTASNIAVEATIKAKTAGIVEFEDLRAIQSTDDE 981
Query: 55 -EAADLIMSLAGNSYLKASYVKR--RTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSV 111
E+ ++M +G + K+ + H LK+ G ++ KD+ FW P N +
Sbjct: 982 GESRTVVMGRSGEIKIIDPKSKKVLMSNHVPYSATLKVKEGEKVDKDQELCFWDPYNAVI 1041
Query: 112 KLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLV 157
L +FE +ES++ +ES Q +GH K ++
Sbjct: 1042 -----LSEFEGVTEFESIEEGVTYKEESDEQ------TGHREKVII 1076
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 43/272 (15%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEA--ADL 59
+ +S K L DF E G+G+V ++ +N + H V+F T ++ L
Sbjct: 11 VRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQSL 70
Query: 60 IMSLAGNSYLKA-SYVKRRTPHYKLGDDLKLNF---------GCQISKDKFSVFWSPENV 109
+S G K + + + ++LN+ G + D V + ENV
Sbjct: 71 SLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWENV 130
Query: 110 SVKLCSDLRKFEFFLSYESVDS-RFELS-DESISQIELHIPSGHSVKYLVIQLHGPPMIY 167
+ + + EF++S+ + R E+ + I E + + L+++L P +Y
Sbjct: 131 KTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKTA--LLLKLKHAPKLY 188
Query: 168 KN----------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKAL 205
+ + WVR DF+ S+G SS+ C E+ L
Sbjct: 189 QRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLL 248
Query: 206 KDLFYYKESPVQFTLVP-GSVFSCNSDLIPLS 236
L Y + L G ++S S+L+PL+
Sbjct: 249 SGLPYCNNDVMDLVLDEVGDIYSA-SELVPLA 279
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 57/249 (22%)
Query: 11 ASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL- 69
S P++ +F T + ++D K + HA V FT ++A ++ AG L
Sbjct: 34 TSCTPPESYPEFTMTDTKQIEITD----DYKKVAPHAFVHFTLPDSATEALNAAGRCDLI 89
Query: 70 ---KASYV------------KRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSV--- 111
K V +RRT D+ + G +S F+V W + V
Sbjct: 90 LNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFL 149
Query: 112 -----KLCSDLRKFEFFLSYESV--------DSRFELSDESISQIELHIPSGHSVKYLVI 158
K+C + S++ + D + I +I+ + + H V +++
Sbjct: 150 VDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDIEEIQRYDDTSHLV--VLL 207
Query: 159 QLHGPPMIY-----------------KNDIHWVREVDFTPSSSVGKSSAICLELPTR--A 199
+L P+++ +D W+R DFTPS ++G+ + + +P R A
Sbjct: 208 RLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIPPRHGA 267
Query: 200 HIPKALKDL 208
+ KAL+ L
Sbjct: 268 KLNKALEYL 276
>gi|374314707|ref|YP_005061135.1| nucleoside-diphosphate-sugar epimerase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350351|gb|AEV28125.1| LOW QUALITY PROTEIN: nucleoside-diphosphate-sugar epimerase
[Sphaerochaeta pleomorpha str. Grapes]
Length = 508
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 53 TVEAADLIMSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVK 112
T + I SL G L + +KRR G+ + F Q ++ +W
Sbjct: 315 TADLIRFICSLPGGQRLMGNLIKRRFLKLARGEHGTVRFLEQSMEEHIDAYWGSRKQWEN 374
Query: 113 LCSDLRKFEFFLSYESVDSRFELSDESISQIELHI 147
+ DL K E F SYE V S DE+ ++ EL I
Sbjct: 375 IPKDLGKIEHFQSYEVVVSLDHGFDETKNENELDI 409
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,280,430,593
Number of Sequences: 23463169
Number of extensions: 175020550
Number of successful extensions: 364559
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 364340
Number of HSP's gapped (non-prelim): 104
length of query: 271
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 131
effective length of database: 9,074,351,707
effective search space: 1188740073617
effective search space used: 1188740073617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)