BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024210
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 144/271 (53%), Gaps = 38/271 (14%)
Query: 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GLKAHAVVEFTTVEAAD 58
M K I + GF + VS + +K FLE TG GTV ++V Q K G + +A+V+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIMSLA------GNSYLKASYVK-------RRTPHYKLGDDLKLNFGCQISKDKFSVFWS 105
LI++ A G SYLKA V+ R + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 106 PENVSVKLCSDLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPM 165
++V V +RK F S+ D R ELS E+I QI+LH P G S K+LVIQ+ G P
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 166 IYK-------------------NDIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKALK 206
I++ +D W+R DFT SS +G+S+A CLELP ++P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 207 DLFYYKESPV-QFTLVPGSVFSCNSD-LIPL 235
+ Y E F + GS +S N++ L+P+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPV 269
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 41/271 (15%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEV---GQNKGLKAHAVVEFTTVEA---AD 58
+ +S + L FLE H GE TV +E+ N + A V+FTT+E A
Sbjct: 12 VKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRAQ 71
Query: 59 LIMSLAG------NSYLKASY---VKRRTPHYKLGDDLKLNFGCQISKDK-FSVFWSPEN 108
L+ S + N L +Y + R K DD+ L G S +K F +
Sbjct: 72 LLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWDG 131
Query: 109 VSVKLCSDLRKFEFFLSYESVDS-RFELSDESISQIELHIPSGHS--VKYLVIQLHGPPM 165
V + ++ R+ EF++ +ES D + E+ E I + +G + + +++L P
Sbjct: 132 VRCWILTEKRRVEFWV-WESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190
Query: 166 IYKN---------------------DIHWVREVDFTPSSSVGKSSAICLELPTRAHIPKA 204
++K D W+R DF+ S S+G S+ CLE+ + +
Sbjct: 191 VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250
Query: 205 LKDLFYYKESPVQFTLVPGSVFSCNSDLIPL 235
L YY+E + T V G F+ + ++PL
Sbjct: 251 FSGLPYYREDTLSLTYVDGKTFASAAQIVPL 281
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 77/255 (30%)
Query: 5 ITLSGFASPVSPKALKDFLEEHTG-------------EGTVSDVEVG---------QNKG 42
+++ GF + K L D+LE+ G G+ + E+ + K
Sbjct: 15 VSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSIDEYKK 74
Query: 43 LKAHAVVEFTTVEAADLIMSLAGNSYL-------------KASYV----KRRTPHYKLGD 85
++ HA V F E+A M AG L K Y +R T YKL
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLA- 133
Query: 86 DLKLNFGCQISKDKFSVFWSPENV---------SVKLCSDLRKFEFFLSYESV------- 129
+ L G +S+D F V W E V + K C RK F ++V
Sbjct: 134 GITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFC--FRKSTAFSFKDAVMHAVINC 191
Query: 130 DSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIY----KNDIH------------- 172
D + EL I + + + H L++QL P ++ +DI+
Sbjct: 192 DYKLELLVRDIQTVRQY-KTLHGF-VLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDP 249
Query: 173 WVREVDFTPSSSVGK 187
W+R DFT ++G+
Sbjct: 250 WIRTTDFTQVGAIGR 264
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 116 DLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDIHWVR 175
+ R+F ++DS EL +S +E + G K L G ++ + IHWV
Sbjct: 112 NFREFNVISDMFALDS-IELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWV- 169
Query: 176 EVDFTPSSSVGKSSAICLELPTRAHIPKALKDLFYYKES--PVQFTLVPGSVFSCNSDLI 233
+ G L+L + +P+ + D F E PV + + F N
Sbjct: 170 ------TFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTN---- 219
Query: 234 PLSFMGPEVGVSKLARILNVKRHGGAHHARSNSLLT 269
G G+ K+A +L VKR G +H A S+SLLT
Sbjct: 220 ---LYG---GLEKIAELLGVKRVGISHQAGSDSLLT 249
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 238 MGPEVGVSKLARILNVKRHGGAHHARSNSLLTS 270
+G +G+SKLA++L + R G AHHA S+SL+T+
Sbjct: 199 LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTA 231
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 173 WVREVDFTPSSSVGKSSAICLELPTRAHIPKALKDL 208
WVR +DFTP+ S G+ S + L+L A + LK L
Sbjct: 217 WVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL 252
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 116 DLRKFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDIHWVR 175
+ R+F+ ++DS EL +S + + G K L ++ ++HWV
Sbjct: 102 NFREFDLDSDIFALDS-IELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWV- 159
Query: 176 EVDFTPSSSVGKSSAICLELPTRAHIPKALKDLF-----YYKESPVQFTLVPGSVFSCNS 230
+ G L+L T ++P + D F Y+ P + + F CNS
Sbjct: 160 ------TFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF---PTVYDIKHLMKF-CNS 209
Query: 231 DLIPLSFMGPEVGVSKLARILNVKRHGGAHHARSNSLLTS 270
G++KLA +L V+R G H A S+SLLTS
Sbjct: 210 ---------LHGGLNKLAELLEVERVGICHQAGSDSLLTS 240
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 243 GVSKLARILNVKRHGGAHHARSNSLLTS 270
G++KLA +L+V+R G H A S+SLLTS
Sbjct: 214 GLNKLAELLDVERVGICHQAGSDSLLTS 241
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 236 SFMGPEVGVSKLARILNVKRHGGAHHARSNSLLTSQ 271
S + + G+ ++A +L +KR G AHHA S+S LT++
Sbjct: 194 SGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTAR 229
>sp|C1F6Z5|ILVC_ACIC5 Ketol-acid reductoisomerase OS=Acidobacterium capsulatum (strain
ATCC 51196 / DSM 11244 / JCM 7670) GN=ilvC PE=3 SV=1
Length = 348
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 35 VEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQ 94
+E + GL+ V E AD+IM LA ++ A Y + PH K G L G
Sbjct: 54 IEKAKKAGLETGTVAEVAAW--ADVIMILAPDTAQAAIYEESIAPHLKAGKTLMFAHGFN 111
Query: 95 ISKDKFSVFWSPENVSVKLCS 115
I ++ P++V V L +
Sbjct: 112 I---RYDAIQPPKDVDVSLVA 129
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800
PE=2 SV=1
Length = 602
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 59 LIMSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLR 118
L M +A YLK V G D G Q + + +PE +
Sbjct: 321 LYMRIAPELYLKELVVG--------GLDRVYEIGKQFRNEGIDLTHNPEFTTC------- 365
Query: 119 KFEFFLSYESVDSRFELSDESISQIELHIPSGHSVKYLVIQLHGPPMIYKNDIHWVREVD 178
EF+++Y + EL++ +S + + G+ +KY + PP+ E+D
Sbjct: 366 --EFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPI----------EID 413
Query: 179 FTP 181
FTP
Sbjct: 414 FTP 416
>sp|A5GMM6|ILVC_SYNPW Ketol-acid reductoisomerase OS=Synechococcus sp. (strain WH7803)
GN=ilvC PE=3 SV=1
Length = 331
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 29 EGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHYKLGDDLK 88
EG+ S E + GL+ +V E E AD IM L + + K Y K PH K G L
Sbjct: 49 EGSRS-AEKAKADGLEVLSVAE--AAERADWIMVLLPDEFQKDVYAKEIAPHLKAGKVLS 105
Query: 89 LNFGCQISKDKFSVFWSPENVSVKLCS 115
G I +F + P +V V + +
Sbjct: 106 FAHGFNI---RFGLIKPPADVDVVMIA 129
>sp|Q10WP7|ILVC_TRIEI Ketol-acid reductoisomerase OS=Trichodesmium erythraeum (strain
IMS101) GN=ilvC PE=3 SV=1
Length = 331
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 39 QNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKD 98
++ GL + V E E ADLIM L + K Y + PH K G L G I
Sbjct: 58 KDAGLDVYPVDE--AAEKADLIMILLPDEVQKTVYKNQIEPHLKEGKILAFAHGFNIH-- 113
Query: 99 KFSVFWSPENVSVKLCS 115
F PENV V + +
Sbjct: 114 -FGQIIPPENVDVVMVA 129
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 236 SFMGPEVGVSKLARILNVKRHGGAHHARSNSLLTSQ 271
S + G+ ++A +L +KR G AHHA S+S LT++
Sbjct: 189 SGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTAR 224
>sp|Q87ME7|LPXD_VIBPA UDP-3-O-acylglucosamine N-acyltransferase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=lpxD PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 33 SDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHY---------KL 83
SDV++G+N + A+AV+E T VE D ++ AG K + + T + L
Sbjct: 108 SDVKMGENVAIGANAVIE-TGVELGDNVVIGAGCFIGKNAKLGNNTKLWANVTIYHEVSL 166
Query: 84 GDDLKLNFGCQISKDKFS 101
GDD + G I D F
Sbjct: 167 GDDCLVQSGTVIGSDGFG 184
>sp|P31629|ZEP2_HUMAN Transcription factor HIVEP2 OS=Homo sapiens GN=HIVEP2 PE=1 SV=2
Length = 2446
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 29/148 (19%)
Query: 22 FLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEAADLI-----------MSLAGN 66
+++ T E +++ E Q + + KA A + T EAA L + G+
Sbjct: 2305 LMKQSTSEDSLNATEREQEENIQTCTKAIASLRIATEEAALLGPDQPARVQEPHQNPLGS 2364
Query: 67 SYLKASYVKRRTP--------HYKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLR 118
+++ + R P H L D K NFG + S F+S K C D +
Sbjct: 2365 AHVSIRHFSRPEPGQPCTSATHPDLHDGEKDNFGTSQTPLAHSTFYS------KSCVDDK 2418
Query: 119 KFEFFLSYESVDSRFELSDESISQIELH 146
+ +F S E S E D S + +LH
Sbjct: 2419 QLDFHSSKELSSSTEESKDPSSEKSQLH 2446
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,628,571
Number of Sequences: 539616
Number of extensions: 4282793
Number of successful extensions: 9278
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9263
Number of HSP's gapped (non-prelim): 23
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)