Query 024210
Match_columns 271
No_of_seqs 177 out of 643
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 4.8E-15 1E-19 125.1 9.4 71 1-74 33-106 (144)
2 PF00076 RRM_1: RNA recognitio 99.6 7.6E-15 1.6E-19 105.0 6.8 68 5-75 1-70 (70)
3 KOG0988 RNA-directed RNA polym 99.5 1.4E-15 3.1E-20 159.8 0.5 256 2-265 10-329 (1145)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 5.2E-14 1.1E-18 130.7 9.4 70 2-74 269-341 (352)
5 PLN03120 nucleic acid binding 99.5 8.5E-14 1.9E-18 128.2 8.9 70 1-74 3-72 (260)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.3E-13 2.9E-18 127.9 10.0 89 3-97 4-100 (352)
7 PF14259 RRM_6: RNA recognitio 99.5 1.1E-13 2.3E-18 100.7 7.0 67 5-74 1-69 (70)
8 TIGR01659 sex-lethal sex-letha 99.5 3.1E-13 6.6E-18 129.0 10.2 87 3-95 108-202 (346)
9 KOG0149 Predicted RNA-binding 99.4 1.4E-12 2.9E-17 118.3 7.2 58 4-64 14-74 (247)
10 smart00362 RRM_2 RNA recogniti 99.4 5.5E-12 1.2E-16 88.0 8.6 68 4-74 1-69 (72)
11 PLN03213 repressor of silencin 99.3 2.7E-12 5.9E-17 126.4 8.2 67 3-74 11-80 (759)
12 KOG0125 Ataxin 2-binding prote 99.3 2.7E-12 5.8E-17 121.1 7.5 69 3-74 97-166 (376)
13 TIGR01645 half-pint poly-U bin 99.3 1.2E-11 2.5E-16 125.8 11.0 70 2-74 107-179 (612)
14 PLN03121 nucleic acid binding 99.3 7.3E-12 1.6E-16 114.3 8.6 68 3-74 6-73 (243)
15 TIGR01648 hnRNP-R-Q heterogene 99.3 1.2E-11 2.6E-16 125.1 10.3 87 3-96 59-148 (578)
16 smart00360 RRM RNA recognition 99.3 1.9E-11 4.1E-16 84.9 7.3 65 7-74 1-68 (71)
17 TIGR01659 sex-lethal sex-letha 99.2 1.5E-11 3.3E-16 117.4 8.1 64 3-69 194-260 (346)
18 TIGR01628 PABP-1234 polyadenyl 99.2 3.3E-11 7.2E-16 119.9 10.3 90 4-96 2-98 (562)
19 KOG0117 Heterogeneous nuclear 99.2 1.9E-11 4E-16 119.1 7.7 89 2-97 83-175 (506)
20 cd00590 RRM RRM (RNA recogniti 99.2 7.2E-11 1.6E-15 82.8 8.6 68 4-74 1-70 (74)
21 TIGR01645 half-pint poly-U bin 99.2 2.6E-11 5.5E-16 123.3 8.7 69 3-74 205-276 (612)
22 COG0724 RNA-binding proteins ( 99.2 4.2E-11 9.1E-16 101.6 8.7 69 3-74 116-187 (306)
23 TIGR01628 PABP-1234 polyadenyl 99.2 2.9E-11 6.4E-16 120.2 8.9 69 3-74 286-356 (562)
24 TIGR01622 SF-CC1 splicing fact 99.2 4.3E-11 9.3E-16 115.5 9.1 69 2-74 89-160 (457)
25 KOG0107 Alternative splicing f 99.2 4.6E-11 1E-15 104.6 6.6 68 2-74 10-77 (195)
26 TIGR01622 SF-CC1 splicing fact 99.2 1E-10 2.3E-15 112.8 9.0 69 3-74 187-258 (457)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.4E-15 113.9 9.2 69 3-74 296-367 (509)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.4E-10 3E-15 114.3 9.0 67 3-74 276-343 (481)
29 KOG4207 Predicted splicing fac 99.1 1.1E-10 2.3E-15 104.9 6.3 68 4-74 15-85 (256)
30 KOG0122 Translation initiation 99.1 2.5E-10 5.3E-15 104.4 8.5 72 3-77 190-269 (270)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.4E-10 7.4E-15 111.6 8.7 67 2-74 2-70 (481)
32 smart00361 RRM_1 RNA recogniti 99.1 4.7E-10 1E-14 83.0 6.7 58 16-76 2-69 (70)
33 KOG0131 Splicing factor 3b, su 99.0 1.3E-10 2.8E-15 102.4 4.1 87 3-94 10-104 (203)
34 TIGR01648 hnRNP-R-Q heterogene 99.0 7.1E-10 1.5E-14 112.3 8.9 66 3-74 234-299 (578)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.2E-09 2.6E-14 106.6 9.7 68 3-74 176-252 (509)
36 KOG0109 RNA-binding protein LA 99.0 3.7E-10 8.1E-15 105.5 5.1 81 1-94 1-86 (346)
37 KOG0108 mRNA cleavage and poly 99.0 6.2E-10 1.3E-14 109.4 6.6 69 3-74 19-90 (435)
38 KOG0105 Alternative splicing f 99.0 5.5E-10 1.2E-14 99.1 5.2 61 3-66 7-67 (241)
39 KOG0144 RNA-binding protein CU 99.0 9.8E-10 2.1E-14 106.9 6.5 87 4-98 36-136 (510)
40 KOG0111 Cyclophilin-type pepti 98.9 4.1E-10 8.9E-15 102.1 2.4 70 3-75 11-83 (298)
41 KOG0123 Polyadenylate-binding 98.9 2.8E-09 6.1E-14 102.8 6.6 108 5-116 79-202 (369)
42 KOG0113 U1 small nuclear ribon 98.9 5.5E-09 1.2E-13 97.9 8.1 69 3-74 102-173 (335)
43 KOG0148 Apoptosis-promoting RN 98.9 4.3E-09 9.3E-14 97.7 7.1 67 3-75 165-231 (321)
44 KOG0127 Nucleolar protein fibr 98.8 7.4E-09 1.6E-13 103.3 6.6 69 3-74 6-82 (678)
45 KOG0148 Apoptosis-promoting RN 98.8 7.4E-09 1.6E-13 96.1 5.9 67 5-74 65-134 (321)
46 KOG0121 Nuclear cap-binding pr 98.8 9.2E-09 2E-13 86.7 5.9 70 2-74 36-108 (153)
47 KOG4212 RNA-binding protein hn 98.7 1.5E-08 3.2E-13 99.2 6.8 70 3-74 45-116 (608)
48 KOG0127 Nucleolar protein fibr 98.7 2.2E-08 4.8E-13 100.0 7.5 68 4-74 119-188 (678)
49 PF13893 RRM_5: RNA recognitio 98.7 4.3E-08 9.2E-13 68.9 6.5 51 19-74 1-51 (56)
50 KOG4205 RNA-binding protein mu 98.7 1.7E-08 3.6E-13 95.6 5.7 73 3-78 7-86 (311)
51 KOG0114 Predicted RNA-binding 98.7 5.7E-08 1.2E-12 79.3 7.3 68 4-74 20-87 (124)
52 KOG0117 Heterogeneous nuclear 98.7 2.7E-08 5.9E-13 97.3 6.3 64 3-74 260-323 (506)
53 KOG4205 RNA-binding protein mu 98.6 3.2E-08 6.8E-13 93.8 5.5 74 3-79 98-178 (311)
54 KOG0145 RNA-binding protein EL 98.6 1.2E-07 2.6E-12 88.0 8.6 86 4-95 43-136 (360)
55 KOG0144 RNA-binding protein CU 98.6 3.1E-08 6.8E-13 96.6 4.7 69 3-74 125-203 (510)
56 KOG0145 RNA-binding protein EL 98.6 1.1E-07 2.4E-12 88.2 7.5 68 4-74 280-350 (360)
57 KOG0109 RNA-binding protein LA 98.4 1.5E-07 3.2E-12 88.3 4.2 64 3-74 79-142 (346)
58 KOG0126 Predicted RNA-binding 98.4 1.7E-08 3.7E-13 89.4 -2.9 84 4-91 37-131 (219)
59 KOG4661 Hsp27-ERE-TATA-binding 98.3 6.5E-07 1.4E-11 90.2 5.9 70 2-74 405-477 (940)
60 KOG0110 RNA-binding protein (R 98.3 1.1E-06 2.3E-11 90.1 6.8 67 5-74 518-590 (725)
61 KOG4454 RNA binding protein (R 98.3 2.6E-07 5.7E-12 83.9 2.1 111 1-122 8-127 (267)
62 KOG0130 RNA-binding protein RB 98.3 8.1E-07 1.8E-11 75.7 4.8 67 4-73 74-143 (170)
63 KOG0123 Polyadenylate-binding 98.3 1.4E-06 3E-11 84.3 6.3 69 3-74 271-341 (369)
64 KOG0147 Transcriptional coacti 98.3 7.5E-07 1.6E-11 89.0 4.4 67 5-74 281-350 (549)
65 KOG0124 Polypyrimidine tract-b 98.2 9.9E-07 2.1E-11 85.1 4.7 69 3-74 114-185 (544)
66 KOG0124 Polypyrimidine tract-b 98.2 2.8E-06 6.1E-11 82.1 6.9 68 3-73 211-286 (544)
67 KOG0116 RasGAP SH3 binding pro 98.2 3E-06 6.5E-11 83.3 6.6 72 2-76 288-366 (419)
68 KOG0106 Alternative splicing f 98.2 1.3E-06 2.8E-11 79.1 3.2 63 3-73 2-64 (216)
69 KOG0132 RNA polymerase II C-te 98.1 3.4E-06 7.3E-11 87.3 6.2 59 2-66 421-479 (894)
70 KOG4209 Splicing factor RNPS1, 98.1 2E-06 4.4E-11 78.4 4.2 68 3-74 102-172 (231)
71 KOG4208 Nucleolar RNA-binding 98.1 8.2E-06 1.8E-10 73.3 7.8 68 5-74 52-127 (214)
72 KOG0146 RNA-binding protein ET 98.1 3.7E-06 8.1E-11 78.5 5.4 74 2-78 285-366 (371)
73 KOG4206 Spliceosomal protein s 98.1 8.3E-06 1.8E-10 73.9 6.8 69 4-75 11-83 (221)
74 KOG4211 Splicing factor hnRNP- 98.1 1.4E-05 3.1E-10 79.2 9.0 67 4-74 12-83 (510)
75 KOG0533 RRM motif-containing p 98.0 1.4E-05 2.9E-10 73.7 6.6 69 3-74 84-154 (243)
76 KOG0153 Predicted RNA-binding 97.9 2.2E-05 4.8E-10 75.2 6.9 56 3-64 229-284 (377)
77 KOG0110 RNA-binding protein (R 97.9 1.2E-05 2.5E-10 82.6 5.1 68 4-74 615-685 (725)
78 KOG0131 Splicing factor 3b, su 97.8 1.7E-05 3.6E-10 70.4 4.2 70 2-74 96-169 (203)
79 KOG4212 RNA-binding protein hn 97.8 3.6E-05 7.8E-10 75.9 5.7 67 3-75 537-604 (608)
80 KOG1457 RNA binding protein (c 97.7 8.7E-05 1.9E-09 68.0 7.0 61 3-66 35-99 (284)
81 KOG0146 RNA-binding protein ET 97.6 6.1E-05 1.3E-09 70.5 4.4 69 3-74 20-98 (371)
82 KOG0129 Predicted RNA-binding 97.4 0.00047 1E-08 69.0 7.6 79 3-87 371-456 (520)
83 KOG4211 Splicing factor hnRNP- 97.4 0.00045 9.8E-09 68.8 7.3 68 4-74 105-179 (510)
84 PF04059 RRM_2: RNA recognitio 97.3 0.001 2.2E-08 53.4 7.3 68 3-71 2-72 (97)
85 KOG0151 Predicted splicing reg 97.3 0.00045 9.9E-09 71.5 6.5 71 1-74 173-249 (877)
86 KOG0226 RNA-binding proteins [ 97.3 0.00024 5.3E-09 65.9 3.9 71 4-77 192-265 (290)
87 KOG4660 Protein Mei2, essentia 97.2 0.00022 4.8E-09 71.7 3.5 67 3-74 76-142 (549)
88 KOG0415 Predicted peptidyl pro 97.1 0.00084 1.8E-08 65.1 5.3 62 3-67 240-304 (479)
89 KOG1548 Transcription elongati 97.0 0.0019 4.2E-08 62.2 7.0 68 4-74 136-213 (382)
90 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0025 5.5E-08 45.4 5.8 52 3-61 2-53 (53)
91 KOG4210 Nuclear localization s 96.8 0.00074 1.6E-08 63.4 2.5 67 4-74 186-256 (285)
92 PF08777 RRM_3: RNA binding mo 96.6 0.006 1.3E-07 49.3 6.2 56 3-64 2-57 (105)
93 KOG1365 RNA-binding protein Fu 96.5 0.0034 7.5E-08 61.4 5.1 60 5-64 164-226 (508)
94 KOG0147 Transcriptional coacti 96.5 0.00094 2E-08 67.3 1.0 64 3-69 180-246 (549)
95 KOG0106 Alternative splicing f 96.4 0.0016 3.4E-08 59.2 1.6 63 4-74 101-163 (216)
96 KOG1190 Polypyrimidine tract-b 96.3 0.015 3.3E-07 57.3 8.1 104 4-112 299-443 (492)
97 KOG1457 RNA binding protein (c 96.3 0.0043 9.4E-08 57.1 4.1 64 3-70 211-274 (284)
98 PF11608 Limkain-b1: Limkain b 95.6 0.042 9.1E-07 43.6 6.3 59 4-71 4-66 (90)
99 COG5175 MOT2 Transcriptional r 95.6 0.023 5E-07 55.1 5.7 70 4-76 116-197 (480)
100 KOG4307 RNA binding protein RB 95.4 0.028 6.1E-07 58.6 6.0 67 4-72 869-937 (944)
101 KOG0120 Splicing factor U2AF, 95.3 0.011 2.3E-07 59.7 2.6 64 3-69 290-356 (500)
102 KOG4206 Spliceosomal protein s 95.2 0.051 1.1E-06 49.6 6.5 62 3-69 147-208 (221)
103 KOG1190 Polypyrimidine tract-b 95.0 0.054 1.2E-06 53.6 6.1 59 3-65 415-473 (492)
104 KOG2314 Translation initiation 94.9 0.035 7.7E-07 56.7 4.9 63 4-69 60-130 (698)
105 KOG0129 Predicted RNA-binding 94.9 0.064 1.4E-06 54.1 6.6 68 2-73 259-339 (520)
106 KOG2202 U2 snRNP splicing fact 94.7 0.012 2.5E-07 54.8 0.8 55 17-74 83-140 (260)
107 KOG1365 RNA-binding protein Fu 94.7 0.041 9E-07 54.1 4.6 71 4-74 282-359 (508)
108 PF05172 Nup35_RRM: Nup53/35/4 94.3 0.11 2.5E-06 41.8 5.5 57 4-64 8-74 (100)
109 KOG1995 Conserved Zn-finger pr 94.1 0.065 1.4E-06 51.9 4.5 73 3-78 67-155 (351)
110 KOG1855 Predicted RNA-binding 93.8 0.07 1.5E-06 53.0 4.1 70 2-74 231-321 (484)
111 KOG4307 RNA binding protein RB 93.8 0.09 1.9E-06 55.1 5.0 59 1-64 1-60 (944)
112 KOG0105 Alternative splicing f 93.7 0.19 4.2E-06 45.4 6.5 55 4-65 117-171 (241)
113 KOG4849 mRNA cleavage factor I 93.5 0.056 1.2E-06 52.7 2.8 68 4-72 82-152 (498)
114 PF10309 DUF2414: Protein of u 93.1 0.35 7.6E-06 36.0 5.9 56 4-64 7-62 (62)
115 KOG0120 Splicing factor U2AF, 93.0 0.2 4.4E-06 50.8 6.0 47 28-74 432-484 (500)
116 KOG1548 Transcription elongati 92.9 0.24 5.3E-06 48.1 6.2 54 17-74 291-344 (382)
117 KOG3152 TBP-binding protein, a 92.2 0.085 1.8E-06 49.3 2.0 67 4-73 76-157 (278)
118 KOG1996 mRNA splicing factor [ 91.3 0.53 1.1E-05 45.2 6.2 58 16-76 300-361 (378)
119 KOG0128 RNA-binding protein SA 90.8 0.026 5.6E-07 59.7 -3.2 58 4-64 669-729 (881)
120 KOG0128 RNA-binding protein SA 90.2 0.12 2.6E-06 54.9 1.0 58 4-64 738-797 (881)
121 KOG0112 Large RNA-binding prot 88.1 0.12 2.5E-06 55.4 -0.8 64 3-69 373-438 (975)
122 KOG0304 mRNA deadenylase subun 87.9 0.13 2.7E-06 47.3 -0.6 28 243-270 202-229 (239)
123 KOG0115 RNA-binding protein p5 85.7 0.86 1.9E-05 42.8 3.6 60 2-64 31-92 (275)
124 KOG4210 Nuclear localization s 84.3 0.67 1.5E-05 43.7 2.2 69 3-74 89-160 (285)
125 KOG4676 Splicing factor, argin 83.8 1.4 3.1E-05 43.6 4.3 60 4-66 9-74 (479)
126 KOG1456 Heterogeneous nuclear 82.2 5.3 0.00012 39.6 7.5 79 4-88 289-377 (494)
127 KOG2193 IGF-II mRNA-binding pr 78.4 1.9 4.2E-05 43.3 3.2 63 3-74 2-68 (584)
128 KOG2253 U1 snRNP complex, subu 78.1 1.3 2.8E-05 46.3 1.9 55 1-64 39-93 (668)
129 PF07576 BRAP2: BRCA1-associat 77.2 15 0.00033 30.0 7.6 64 4-69 15-79 (110)
130 PF08952 DUF1866: Domain of un 75.3 10 0.00022 32.7 6.4 48 18-73 52-103 (146)
131 KOG1456 Heterogeneous nuclear 69.7 13 0.00028 37.1 6.4 67 3-71 407-474 (494)
132 KOG2416 Acinus (induces apopto 65.5 5.8 0.00013 41.4 3.2 57 3-64 445-501 (718)
133 KOG4660 Protein Mei2, essentia 64.9 8.7 0.00019 39.5 4.3 60 5-66 391-453 (549)
134 PF03880 DbpA: DbpA RNA bindin 63.6 19 0.00042 26.7 5.0 57 12-74 11-69 (74)
135 KOG4285 Mitotic phosphoprotein 60.0 30 0.00066 33.5 6.7 62 5-74 200-261 (350)
136 KOG4410 5-formyltetrahydrofola 59.5 6.6 0.00014 37.8 2.2 48 4-57 332-380 (396)
137 PF02714 DUF221: Domain of unk 59.3 11 0.00023 35.1 3.6 28 47-74 1-31 (325)
138 PF07292 NID: Nmi/IFP 35 domai 57.9 36 0.00078 26.9 5.8 52 47-103 1-58 (88)
139 PF03468 XS: XS domain; Inter 55.8 8.3 0.00018 31.7 2.0 39 14-56 29-68 (116)
140 KOG2591 c-Mpl binding protein, 50.4 35 0.00077 35.6 5.8 65 5-74 178-244 (684)
141 PF04896 AmoC: Ammonia monooxy 48.5 3.7 7.9E-05 38.3 -1.3 11 174-184 134-144 (251)
142 PF15023 DUF4523: Protein of u 47.5 39 0.00085 29.6 4.9 55 4-65 88-146 (166)
143 KOG0112 Large RNA-binding prot 47.3 31 0.00068 37.7 5.1 56 3-64 456-511 (975)
144 TIGR03078 CH4_NH3mon_ox_C meth 45.9 6.3 0.00014 36.1 -0.2 11 173-183 121-131 (229)
145 TIGR03636 L23_arch archaeal ri 45.0 82 0.0018 24.2 5.9 61 4-65 15-75 (77)
146 PRK14548 50S ribosomal protein 43.0 84 0.0018 24.6 5.7 61 4-65 22-82 (84)
147 KOG2068 MOT2 transcription fac 41.6 15 0.00033 35.6 1.7 67 5-74 80-155 (327)
148 KOG0804 Cytoplasmic Zn-finger 37.3 79 0.0017 32.2 5.9 63 3-67 75-138 (493)
149 PRK11558 putative ssRNA endonu 36.5 65 0.0014 26.1 4.3 48 4-54 29-76 (97)
150 COG5353 Uncharacterized protei 36.5 1.1E+02 0.0024 26.8 5.9 53 4-56 89-154 (161)
151 KOG4483 Uncharacterized conser 35.5 86 0.0019 31.7 5.7 64 4-74 393-456 (528)
152 PF08675 RNA_bind: RNA binding 35.3 1.5E+02 0.0033 23.6 6.0 51 6-65 13-63 (87)
153 PF07292 NID: Nmi/IFP 35 domai 34.9 19 0.00041 28.5 0.9 22 3-24 53-74 (88)
154 COG0724 RNA-binding proteins ( 31.5 59 0.0013 27.1 3.5 57 3-62 226-285 (306)
155 PF11465 Receptor_2B4: Natural 31.2 51 0.0011 27.2 2.9 44 96-139 38-94 (108)
156 KOG2891 Surface glycoprotein [ 28.9 29 0.00064 33.5 1.3 59 3-64 150-242 (445)
157 KOG4574 RNA-binding protein (c 27.8 31 0.00066 37.6 1.3 60 4-69 300-359 (1007)
158 COG5228 POP2 mRNA deadenylase 24.7 20 0.00044 33.5 -0.5 18 253-270 226-243 (299)
159 PF14742 GDE_N_bis: N-terminal 24.7 1.4E+02 0.0031 26.1 4.8 69 131-201 113-188 (194)
160 cd00027 BRCT Breast Cancer Sup 22.1 1.6E+02 0.0035 19.3 3.8 31 2-34 1-31 (72)
161 smart00568 GRAM domain in gluc 21.9 1.6E+02 0.0034 20.4 3.8 44 102-145 15-59 (61)
162 KOG2318 Uncharacterized conser 20.9 3.6E+02 0.0078 28.6 7.3 67 3-69 175-293 (650)
163 PF04847 Calcipressin: Calcipr 20.8 1.9E+02 0.004 25.7 4.8 52 15-72 8-61 (184)
164 cd04485 DnaE_OBF DnaE_OBF: A s 20.8 1.2E+02 0.0027 21.2 3.1 26 30-55 4-29 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=4.8e-15 Score=125.14 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=63.6
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++.+|||+|||+++++++|+++|+++ |+|.+|+|+.|+.+ ||||||+|+++++|+.|++.+++..|+++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF---GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 35689999999999999999999999 99999999999874 9999999999999999999886666655555
No 2
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=7.6e-15 Score=104.96 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=62.9
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeecc
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYVK 75 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~R 75 (271)
|||+|||.++++++|+++|+++ |.|..+++..+..+ +|+|||+|++.++|+.|++.++|..++++++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF---GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT---STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh---hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 99999999997544 99999999999999999999999888887753
No 3
>KOG0988 consensus RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification]
Probab=99.53 E-value=1.4e-15 Score=159.81 Aligned_cols=256 Identities=20% Similarity=0.196 Sum_probs=174.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc------CCCe-eEE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA------GNSY-LKA 71 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~------g~~~-L~~ 71 (271)
..++-+++++.+.++.++.+|.+..+|.++|+..++-+++.+ +-|+-++|.+.+.--.++... +... ++.
T Consensus 10 ~~~~~~~~f~e~~~~~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~l~~~~~~~~~a~v~f~~~~~~~~ 89 (1145)
T KOG0988|consen 10 VEEQDCNGFPESNSAVELGDFLELLIGAITVYLLKMNTTKPYRPNRVYHGSDFTSIALDCSGIETPLAKVYFKHNQGLNP 89 (1145)
T ss_pred eeeeeccCcccchhHHHhhhHHHHHhcchHHHHHhcCCCCCCCCccccccccccccccccccchhhHHHHhhccCCCCCc
Confidence 457889999999999999999999998888888888887763 788889998765433322211 1111 221
Q ss_pred eec---cCC-----CcCcccCCCceEEEeeecc---CCeeEEeecC---CcceeeeecCceEEEEEeee-cceeeeeeee
Q 024210 72 SYV---KRR-----TPHYKLGDDLKLNFGCQIS---KDKFSVFWSP---ENVSVKLCSDLRKFEFFLSY-ESVDSRFELS 136 (271)
Q Consensus 72 r~~---Rpr-----~~~~~~~~~~~L~~G~~vs---~~~f~v~w~~---~~v~v~f~~~~rk~~F~~s~-~~~~yKLE~~ 136 (271)
.++ |.+ ..+..+ ..+++++++--. .-.|..+|++ ..|.|+..+.++.+++.+.. ..-++..|++
T Consensus 90 ~e~~~~~~~l~~~a~~~~~l-~~i~~~~~F~~~~~~t~~~~~~~~~~v~~~v~V~~~~~~~~~~~p~~~~~~~~v~f~~~ 168 (1145)
T KOG0988|consen 90 WEVETSRRILSSLAVIRESL-NQIVLEKVFDKPDGITKTFDCLESYKVNDQVTVRGSPVRRIVESPVVEYCKLCVPFEHS 168 (1145)
T ss_pred cchhhhhhhccccccchHHH-hhHHHhhccCcccceeeeecceEEEeecceEEEeccceeeeeecccccccccccchhhc
Confidence 111 111 134444 444444443222 2355556666 67777777778888888654 3346666777
Q ss_pred hhhhhheecccCCCCC----ceE---------EEEEecCCCceeecC-------------CceeeeeccCCCCcccccee
Q 024210 137 DESISQIELHIPSGHS----VKY---------LVIQLHGPPMIYKND-------------IHWVREVDFTPSSSVGKSSA 190 (271)
Q Consensus 137 ~e~I~ei~~~~~~g~~----~~~---------LLlql~~aP~Iy~r~-------------d~WiRttDFTps~sIG~ss~ 190 (271)
++.+-+..-++.+..+ .+. +.+|.+..|.++... ++|+|||||+++++||++++
T Consensus 169 ~~~~i~~~~~D~~~~s~~~~~~~~~~~~~G~~k~~~~~~~p~~~~~~~~~~Ef~k~~~~~~~~i~~~~~~~~~~v~~eta 248 (1145)
T KOG0988|consen 169 CRVLIETVSLDLDKPSIIRYPKSRRYLDNGGSKYFRFAFSPLLLALGDSELEFKKDFLADLLYIRTTDLRSRTGVGIETA 248 (1145)
T ss_pred chhheeeEEeccCcchhccCcchhhhhhcCccceeecccccHHHhhccceeeeecccccccceeeecceeccccccceee
Confidence 6666654333333322 111 234444455444443 69999999999999999999
Q ss_pred EEEEecCCCCcchhhhhccccccc-----C--ceeEEeCCCccc-cCCceeeeeecC-CCcCcccceeEEE----EEeeC
Q 024210 191 ICLELPTRAHIPKALKDLFYYKES-----P--VQFTLVPGSVFS-CNSDLIPLSFMG-PEVGVSKLARILN----VKRHG 257 (271)
Q Consensus 191 ~clei~~~~~~~~~~~~~~yy~e~-----~--~~~~l~~g~~f~-~~s~lvPlV~~~-~~~~~~lpyeIlf----lv~~g 257 (271)
+|+||+.+ +.+++||++++ . -.+..+.|..|+ ++.+++|++ + ...|...||++|+ |||.|
T Consensus 249 ~~~eI~~~-----i~~~lP~~r~~~~~~~~~~~s~~ir~~~~~~~~~~~~~~l~--~~~~~git~~~e~l~~r~slv~dq 321 (1145)
T KOG0988|consen 249 SCDEIRVP-----IWKDLPYNRYNGSTAEEFRLSVWIRLGSKYDVSSAQLVPLN--DERDFGITHLYECLVSRGSLVKDQ 321 (1145)
T ss_pred ccceecch-----hhccCCcccccccchhhhhhhhheecccccccccceeeecc--ccccccceeehhhhhcccchhhhh
Confidence 99999986 66777777774 2 367888999997 677899998 6 5688899999999 89999
Q ss_pred ccCCCCcc
Q 024210 258 GAHHARSN 265 (271)
Q Consensus 258 ~~~~~~~~ 265 (271)
++...|.+
T Consensus 322 ~~~~~~~~ 329 (1145)
T KOG0988|consen 322 VLLEEAHL 329 (1145)
T ss_pred HHhhhhHH
Confidence 88776654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.51 E-value=5.2e-14 Score=130.66 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=65.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|||+|||+++++++|+++|++| |.|.+|+|+.|+. + ||||||+|.+.++|..||+.++|..|.+|++
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~f---G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPF---GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3479999999999999999999999 9999999999985 4 9999999999999999999999988888877
No 5
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=8.5e-14 Score=128.19 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=62.3
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|.+||||||||++++++||++||+.+ |+|.+|+|+.|++.+|||||+|+++++|+.|+. ++|..|.++++
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~---G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V 72 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFS---GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSV 72 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceE
Confidence 45899999999999999999999998 999999999998769999999999999999996 56655655555
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.3e-13 Score=127.92 Aligned_cols=89 Identities=8% Similarity=0.128 Sum_probs=75.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV----- 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~----- 74 (271)
.+|||+|||.+++++||+++|+++ |+|.+|+|+.|+. | ||||||+|.++++|+.||+.++|..|.++.+
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~---G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSI---GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHcc---CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 489999999999999999999999 9999999999886 4 9999999999999999999997777766666
Q ss_pred cCCCcCcccCCCceEEEeeeccC
Q 024210 75 KRRTPHYKLGDDLKLNFGCQISK 97 (271)
Q Consensus 75 Rpr~~~~~~~~~~~L~~G~~vs~ 97 (271)
+|. .... .+.+|.+|.+...
T Consensus 81 ~~~--~~~~-~~~~l~v~~l~~~ 100 (352)
T TIGR01661 81 RPS--SDSI-KGANLYVSGLPKT 100 (352)
T ss_pred ccc--cccc-ccceEEECCcccc
Confidence 443 2334 6678899987554
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.1e-13 Score=100.66 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=61.0
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|||+|||++++++||.++|+.+ |.|..+++..++.+ ||+|||+|.++++|.+|++..++..++++.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~---g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF---GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS---SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 7999999999999999999999 99999999998776 9999999999999999999998888888765
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=3.1e-13 Score=128.96 Aligned_cols=87 Identities=8% Similarity=0.106 Sum_probs=72.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV----- 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~----- 74 (271)
.+|||+|||+++|+++|+++|+++ |.|.+|+|+.|+.. ||||||+|+++++|+.|++.+++..|.++++
T Consensus 108 ~~LfVgnLp~~~te~~L~~lF~~~---G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 108 TNLIVNYLPQDMTDRELYALFRTI---GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 589999999999999999999998 99999999999763 9999999999999999999987766665555
Q ss_pred cCCCcCcccCCCceEEEeeec
Q 024210 75 KRRTPHYKLGDDLKLNFGCQI 95 (271)
Q Consensus 75 Rpr~~~~~~~~~~~L~~G~~v 95 (271)
+|.. -.. .+.+|.|+.+-
T Consensus 185 ~p~~--~~~-~~~~lfV~nLp 202 (346)
T TIGR01659 185 RPGG--ESI-KDTNLYVTNLP 202 (346)
T ss_pred cccc--ccc-ccceeEEeCCC
Confidence 3321 234 55678888764
No 9
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.4e-12 Score=118.34 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=55.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
+||||||+|.+..|+|+++||++ |+|..+.|++|+.. ||||||+|.|.|+|++|.+..
T Consensus 14 KifVggL~w~T~~~~l~~yFeqf---GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQF---GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHh---CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 69999999999999999999999 99999999999984 999999999999999998875
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=5.5e-12 Score=88.05 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=61.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
||+|+|+|..++.++|+++|+++ |.|..+++..++.. +|+|||+|.+.++|+.|++.+++..++++.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~---g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF---GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 68999999999999999999999 99999999988743 9999999999999999999988777766654
No 11
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=2.7e-12 Score=126.39 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=58.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCH--HHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTV--EAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~--e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++||||||+++++++||.+.|.+| |+|.+|+|+ |+. ||||||+|.++ +++++||+.++|...+||.+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeF---GsVkdVEIp--RETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPM---GTVDAVEFV--RTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEe--cccCCceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 589999999999999999999999 999999999 554 99999999987 78999999996644444443
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.7e-12 Score=121.12 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=64.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|.|+|+|||+.-.+-||+..|+++ |.|.+|+|+...+| ||||||+|+++++|++|-+++.|..+.||.+
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kf---G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKF---GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhh---CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 679999999999999999999999 99999999999988 9999999999999999999997766666666
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.30 E-value=1.2e-11 Score=125.77 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=65.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..+|||||||+++++++|+++|+++ |.|.+|+|+.|+.. ||||||+|+++++|+.|++.++|..+.+|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~f---G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~I 179 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 179 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcc---CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEeccee
Confidence 3589999999999999999999999 99999999999863 9999999999999999999998888888877
No 14
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=7.3e-12 Score=114.32 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.||+|+||++++|++||++||+.+ |+|.+|+|+.|++.+|||||+|.++++|+.|+.+ +|..|..+++
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~---G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllL-nGa~l~d~~I 73 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHC---GAIEHVEIIRSGEYACTAYVTFKDAYALETAVLL-SGATIVDQRV 73 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhc---CCeEEEEEecCCCcceEEEEEECCHHHHHHHHhc-CCCeeCCceE
Confidence 589999999999999999999998 9999999999976689999999999999999955 5655555544
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.29 E-value=1.2e-11 Score=125.11 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeE-EeeccCCCc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLK-ASYVKRRTP 79 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~-~r~~Rpr~~ 79 (271)
.+|||||||+++++++|+++|+++ |.|++|+|+.|..+ ||||||+|+++|+|++||+.+++..+. ++.+.-
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~---G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V--- 132 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKA---GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV--- 132 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhh---CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc---
Confidence 589999999999999999999998 99999999999766 999999999999999999999887774 443321
Q ss_pred CcccCCCceEEEeeecc
Q 024210 80 HYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 80 ~~~~~~~~~L~~G~~vs 96 (271)
.... ++-+|.+|.+..
T Consensus 133 ~~S~-~~~rLFVgNLP~ 148 (578)
T TIGR01648 133 CISV-DNCRLFVGGIPK 148 (578)
T ss_pred cccc-cCceeEeecCCc
Confidence 2234 667889988754
No 16
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=1.9e-11 Score=84.85 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=58.3
Q ss_pred EeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 7 LSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 7 Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|+|+|+.+++++|+++|+++ |.|..+++..++. + +|+|||+|.+.++|..|++.+++..++++.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~---g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF---GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh---CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 68999999999999999998 9999999998876 3 9999999999999999999988776665543
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=1.5e-11 Score=117.38 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=58.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
.+|||+|||++++++||+++|+++ |+|.+|+|+.|+. + ||||||+|++.++|++||+.+++..+
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~f---G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKY---GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhc---CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 479999999999999999999999 9999999999986 3 99999999999999999999866543
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.24 E-value=3.3e-11 Score=119.85 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=73.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC----
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR---- 76 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp---- 76 (271)
+|||||||.++|+++|.++|+++ |.|.+|+|..|+.+ +|||||+|.+.++|++|++.+++..++++++|-
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~---G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPF---GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999 99999999999873 899999999999999999999888787777621
Q ss_pred CCcCcccCCCceEEEeeecc
Q 024210 77 RTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 77 r~~~~~~~~~~~L~~G~~vs 96 (271)
+.+..+-.....|.|+.+-.
T Consensus 79 ~~~~~~~~~~~~vfV~nLp~ 98 (562)
T TIGR01628 79 RDPSLRRSGVGNIFVKNLDK 98 (562)
T ss_pred ccccccccCCCceEEcCCCc
Confidence 22333331334677777643
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.9e-11 Score=119.09 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=76.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCee-EEeeccCC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYL-KASYVKRR 77 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L-~~r~~Rpr 77 (271)
|.-||||+||.++.++||..+||+. |+|+++|++.|+. | ||||||+|.+.++|+.||+.+|++++ .|+.++
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEki---G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig-- 157 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKI---GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG-- 157 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhc---cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE--
Confidence 4569999999999999999999998 9999999999976 4 99999999999999999999988776 333332
Q ss_pred CcCcccCCCceEEEeeeccC
Q 024210 78 TPHYKLGDDLKLNFGCQISK 97 (271)
Q Consensus 78 ~~~~~~~~~~~L~~G~~vs~ 97 (271)
-...+ ++-+|.||.....
T Consensus 158 -vc~Sv-an~RLFiG~IPK~ 175 (506)
T KOG0117|consen 158 -VCVSV-ANCRLFIGNIPKT 175 (506)
T ss_pred -EEEee-ecceeEeccCCcc
Confidence 23567 8889999997654
No 20
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=7.2e-11 Score=82.77 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=61.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+|+|+|+|+.+++++|+++|+.+ |.|.++.+..++.+ +|+|||+|.+.++|..|++.+++..++++.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~---g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF---GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc---CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 58999999999999999999998 99999999988875 9999999999999999999987766655543
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=2.6e-11 Score=123.30 Aligned_cols=69 Identities=13% Similarity=0.239 Sum_probs=61.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||.++++++|+++|++| |.|.+|+|..|+.+ ||||||+|++.++|..||+.+|+..|.|+.+
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~F---G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhc---CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 489999999999999999999999 99999999999874 9999999999999999999996555544444
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=4.2e-11 Score=101.58 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=64.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||+.+++++|.++|.++ |.|.++++..|+. + ||||||+|.++++|..|+..+++..+.++++
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~---g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~ 187 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKF---GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPL 187 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCcee
Confidence 689999999999999999999999 9999999999984 4 9999999999999999999998777777766
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=2.9e-11 Score=120.23 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++++++|+++|++| |+|.+|+|..|..+ ||||||+|++.++|++|++.+++..+.++++
T Consensus 286 ~~l~V~nl~~~~~~~~L~~~F~~~---G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l 356 (562)
T TIGR01628 286 VNLYVKNLDDTVTDEKLRELFSEC---GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPL 356 (562)
T ss_pred CEEEEeCCCCccCHHHHHHHHHhc---CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCcee
Confidence 579999999999999999999999 99999999999776 9999999999999999999986655555544
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.21 E-value=4.3e-11 Score=115.46 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=61.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+||||+|||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|.+.++|++|+.+ +|..+.++++
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~---G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l-~g~~~~g~~i 160 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKV---GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALAL-TGQMLLGRPI 160 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCEECCeee
Confidence 3689999999999999999999998 99999999999873 99999999999999999975 5655666655
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.6e-11 Score=104.62 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..+||||||+.+++..||...|..| |.+..|=|...+ .|||||||+++.+|+.|+..|+|+.+.+..+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y---G~lrsvWvArnP--PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY---GPLRSVWVARNP--PGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc---CcceeEEEeecC--CCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 4589999999999999999999999 998888777633 7999999999999999999999988776655
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1e-10 Score=112.76 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||.++++++|+++|+++ |.|..|++..|+.+ ||||||+|.+.++|..|++.++|..+.++++
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~---G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i 258 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPF---GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPI 258 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEE
Confidence 589999999999999999999999 99999999998874 9999999999999999999998777766665
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.1e-10 Score=113.92 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=61.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||+.+++++|+++|+++ |.|..+.|+.++. | +|||||+|++.++|+.|++.++|..+.++.+
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESF---GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 589999999999999999999999 9999999998875 4 9999999999999999999987766655544
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.13 E-value=1.4e-10 Score=114.33 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=60.3
Q ss_pred ceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+ .+++++|+++|++| |.|.+|+|+.++ ||||||+|.+.++|+.|++.++|..|.++++
T Consensus 276 ~~l~v~nL~~~~vt~~~L~~lF~~y---G~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 276 SVLMVSGLHQEKVNCDRLFNLFCVY---GNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 5899999998 69999999999999 999999999876 7999999999999999999887766655555
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=104.93 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+|.|-||.+.+++++|...||+| |.|-+|-|+-|+-+ ||||||.|-+..+|+.|+++++|..|+|+++
T Consensus 15 SLkVdNLTyRTspd~LrrvFekY---G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKY---GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHh---CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 69999999999999999999999 99999999999975 9999999999999999999999998988888
No 30
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.5e-10 Score=104.40 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCC-----eeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNS-----YLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~-----~L~~r~~ 74 (271)
.||.|.|||.+++++||.++|-.+ |.|.+|.|..|+++ ||||||+|.+.++|++||+.++|+ -|++-=+
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~f---g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPF---GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ceeEEecCccccChhHHHHHhhcc---CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 579999999999999999999999 99999999999994 999999999999999999999774 2344444
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 554
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.07 E-value=3.4e-10 Score=111.58 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=58.2
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc--CCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA--GNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~--g~~~L~~r~~ 74 (271)
+++|||+|||++++++||+++|+++ |+|.+|+|+.+ ||||||+|++.++|++|++.+ ++..|.++++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~f---G~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l 70 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPF---GPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPA 70 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEE
Confidence 5899999999999999999999999 99999999854 599999999999999999864 4444555544
No 32
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=4.7e-10 Score=82.99 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=51.1
Q ss_pred HHHHHHHHh----cCcCCceEEEEE-EecCCC---C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC
Q 024210 16 PKALKDFLE----EHTGEGTVSDVE-VGQNKG---L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR 76 (271)
Q Consensus 16 a~dLk~~Fe----~~~g~G~V~~v~-I~~dr~---g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp 76 (271)
+++|+++|+ .+ |+|.++. |..|++ + ||||||+|.++++|++|++.++|+.+.++.+++
T Consensus 2 ~~~l~~~~~~~~~~f---G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYF---GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhc---CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 689999999 88 9999995 776663 3 999999999999999999999999999988754
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.05 E-value=1.3e-10 Score=102.35 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=71.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcC-----CCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAG-----NSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g-----~~~L~~r~~ 74 (271)
.|||||||+..++++-|.++|-+. |.|.+++++.|+.. +|||||||.++|+|+-||+.++ |+.|+++.+
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqa---gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQA---GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhc---CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 699999999999999999999998 99999999999985 9999999999999999999885 455666655
Q ss_pred cCCCcCcccCCCceEEEeee
Q 024210 75 KRRTPHYKLGDDLKLNFGCQ 94 (271)
Q Consensus 75 Rpr~~~~~~~~~~~L~~G~~ 94 (271)
-....... -++.|.+|+|
T Consensus 87 s~~~~nl~--vganlfvgNL 104 (203)
T KOG0131|consen 87 SAHQKNLD--VGANLFVGNL 104 (203)
T ss_pred cccccccc--cccccccccc
Confidence 32221222 3466777774
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.02 E-value=7.1e-10 Score=112.33 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ +.|+|.+|+++ |+||||+|++.++|++|++.+++..|.++.+
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f-~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I 299 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEF-KPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEI 299 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-CCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 589999999999999999999997 55899999876 7899999999999999999987666655554
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.01 E-value=1.2e-09 Score=106.64 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=53.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCc---C------CceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHT---G------EGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~---g------~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
+||||||||+++|+++|++||+++. | .+.|..+.+..+ +|||||+|.+.++|+.|++ ++|..+.+++
T Consensus 176 r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~-l~g~~~~g~~ 251 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMA-LDSIIYSNVF 251 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhc-CCCeEeeCce
Confidence 6899999999999999999999751 1 134555555332 7999999999999999995 6666666655
Q ss_pred c
Q 024210 74 V 74 (271)
Q Consensus 74 ~ 74 (271)
+
T Consensus 252 l 252 (509)
T TIGR01642 252 L 252 (509)
T ss_pred e
Confidence 5
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=3.7e-10 Score=105.49 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=67.9
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----c
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV-----K 75 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~-----R 75 (271)
|.-++||||||..+++.+|+.+||+| |+|..|+|+ +.||||++++..+|+.||..+++..|++..+ +
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~y---gkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQY---GKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhh---CceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 56689999999999999999999999 999999999 8999999999999999999887766655544 3
Q ss_pred CCCcCcccCCCceEEEeee
Q 024210 76 RRTPHYKLGDDLKLNFGCQ 94 (271)
Q Consensus 76 pr~~~~~~~~~~~L~~G~~ 94 (271)
-+ .- ..-+||+|++
T Consensus 73 sK----sk-~stkl~vgNi 86 (346)
T KOG0109|consen 73 SK----SK-ASTKLHVGNI 86 (346)
T ss_pred cc----CC-CccccccCCC
Confidence 22 11 3457788884
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=6.2e-10 Score=109.37 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=64.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..|||||+|+++++++|.++|++. |.|.+.+++.|+++ |||||++|+++++|+.|++.++|.++.+|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~---g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV---GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc---CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 579999999999999999999998 99999999999995 9999999999999999999998777766666
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=5.5e-10 Score=99.07 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=56.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
.+|||||||.++.++|++++|-+| |.|..++++..+..-+||||+|+++.+|+.||..-+|
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKy---g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKY---GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhh---cceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc
Confidence 589999999999999999999999 9999999998886689999999999999999987644
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=9.8e-10 Score=106.95 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=76.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc--------CCCeeEEe
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA--------GNSYLKAS 72 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~--------g~~~L~~r 72 (271)
++|||-+|.+.+++||+++||+| |.|..|.|+.||.. ||.+||.|.+.++|.+|++++ ..+.+.++
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~y---g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKY---GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hheeccCCccccHHHHHHHHHHh---CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 68999999999999999999999 99999999999984 999999999999999999998 33778888
Q ss_pred ec---cCCCcCcccCCCceEEEeeeccCC
Q 024210 73 YV---KRRTPHYKLGDDLKLNFGCQISKD 98 (271)
Q Consensus 73 ~~---Rpr~~~~~~~~~~~L~~G~~vs~~ 98 (271)
++ |.|. . ++-+|.+|++-+.-
T Consensus 113 ~Ad~E~er~----~-~e~KLFvg~lsK~~ 136 (510)
T KOG0144|consen 113 YADGERERI----V-EERKLFVGMLSKQC 136 (510)
T ss_pred ccchhhhcc----c-cchhhhhhhccccc
Confidence 88 3332 3 78889999976544
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.1e-10 Score=102.11 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=65.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~R 75 (271)
+|||||||...|+++=|..-|=.+ |.|.++.++.|-++ ||||||+|+..|+|..||+.+++++|-||.+|
T Consensus 11 rtlYVGGladeVtekvLhaAFIPF---GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPF---GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccc---cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 589999999999999999999999 99999999999985 99999999999999999999998888777663
No 41
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.8e-09 Score=102.83 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=80.4
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec---------
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV--------- 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~--------- 74 (271)
|||-|||.+++.++|.++|+.+ |+|.+|+|.+|++| +|| ||+|+++++|.+||+.++|..+.++.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~---g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEF---GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhh---cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 8999999999999999999999 99999999999999 999 999999999999999998887877776
Q ss_pred -cCC-Cc--CcccCCCceEEEeeeccCCeeEEeecCC--cceeeeecC
Q 024210 75 -KRR-TP--HYKLGDDLKLNFGCQISKDKFSVFWSPE--NVSVKLCSD 116 (271)
Q Consensus 75 -Rpr-~~--~~~~~~~~~L~~G~~vs~~~f~v~w~~~--~v~v~f~~~ 116 (271)
|.+ .. .-++..-...+.....+++.+.-.|+.. -+++.++.+
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~ 202 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD 202 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec
Confidence 111 11 1112111333444455555666666553 445555554
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=5.5e-09 Score=97.89 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||||+-|++++++.+|+..|+.| |.|.+++|+.|+.+ ||||||+|+++.+...|-+.++|..|+++.+
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~Y---G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKY---GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhc---CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 699999999999999999999999 99999999999874 9999999999999999999999999988888
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=4.3e-09 Score=97.69 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=63.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~R 75 (271)
.|||||||+...++++|++.|+.| |.|-+|||..|+ |||||.|++.|+|.+||-.+++.++.+..+|
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~f---G~I~EVRvFk~q---GYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPF---GPIQEVRVFKDQ---GYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccC---CcceEEEEeccc---ceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 479999999999999999999999 999999999886 9999999999999999999999999888873
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=7.4e-09 Score=103.31 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=63.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc-----CCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA-----GNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~-----g~~~L~~r~~ 74 (271)
.|++|++||++++.++|.+||+.. |.|..|-+++++.. ||||||+|+-.|+++.|+... +|+.|++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~v---GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYV---GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcc---cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 799999999999999999999998 99999999999974 999999999999999999987 5677777776
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7.4e-09 Score=96.14 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=63.3
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++||-|+..++-++|++-|.++ |+|.+|||+.|..+ +|||||-|.+.++|++||..|||+=|-.|.+
T Consensus 65 vfvgdls~eI~~e~lr~aF~pF---GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPF---GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred EEehhcchhcchHHHHHHhccc---cccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 8999999999999999999999 99999999999974 9999999999999999999998887877766
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=9.2e-09 Score=86.67 Aligned_cols=70 Identities=9% Similarity=0.187 Sum_probs=64.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.|||||||++.+++|++-++|+.. |+|.++-+--||.. =||+||+|-+.++|+.|+.-+++..|+-|++
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~c---G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKC---GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhc---cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 4699999999999999999999997 99999988889875 6999999999999999999998888888877
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=99.17 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=64.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|+.|||+++.+.|||+++.+.+ |+|.=|++..|.++ ||-|.|||.++|.+++|++.++.+++++|++
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekv--Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKV--GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhc--CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 3599999999999999999999998 99999999999998 9999999999999999999997666666665
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.2e-08 Score=99.96 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=64.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+-|-||||++...+|+..|+++ |.|+.+.|+..++| +|||||+|....+|+.|++.+|+..+.||++
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~---G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNF---GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhc---ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCcee
Confidence 46799999999999999999999 99999999988887 9999999999999999999999999999987
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.71 E-value=4.3e-08 Score=68.94 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=44.6
Q ss_pred HHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 19 LKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 19 Lk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|.++|+++ |+|.++++..++ +|+|||+|.+.++|+.|++.++|..+.++++
T Consensus 1 L~~~f~~f---G~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l 51 (56)
T PF13893_consen 1 LYKLFSKF---GEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPL 51 (56)
T ss_dssp HHHHHTTT---S-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEE
T ss_pred ChHHhCCc---ccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 68999999 999999998766 7999999999999999999998877776654
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=1.7e-08 Score=95.61 Aligned_cols=73 Identities=16% Similarity=0.348 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
.+++||+|+|.+++|.|+++|.++ |+|.+|.|+.|+.. |||+||+|++++....++..- +++.++..++-
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf~~~---Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYFSQF---GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cceeecCcCccccHHHHHHHhccc---CceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 589999999999999999999999 99999999999984 999999999999998888763 55555555554
Q ss_pred CCC
Q 024210 76 RRT 78 (271)
Q Consensus 76 pr~ 78 (271)
||.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 443
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=5.7e-08 Score=79.34 Aligned_cols=68 Identities=13% Similarity=0.314 Sum_probs=62.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
-+||-|||+++|+||+-|+|.+| |+|..+||-.++++||-|||-+++-.+|.+|.+.+.|..+..+.+
T Consensus 20 iLyirNLp~~ITseemydlFGky---g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKY---GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcc---cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 48999999999999999999999 999999999999889999999999999999999997766655544
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.7e-08 Score=97.34 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=59.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|-+||-||+.++|+|.|++.|+++ |.|.+|+.+ |-||||||++.++|-+|++.++|.+|+|.++
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~---G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEF---GKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhc---cceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceE
Confidence 469999999999999999999999 999999988 5699999999999999999998877777766
No 53
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.65 E-value=3.2e-08 Score=93.76 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=66.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
++|+||++|.++++++++++|+++ |.|.++.++.|++. ||||||+|.++++++.+...- +++.+.++.+-
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~---g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQF---GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhcc---ceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 589999999999999999999999 99999999999985 999999999999999888764 77888888886
Q ss_pred CCCc
Q 024210 76 RRTP 79 (271)
Q Consensus 76 pr~~ 79 (271)
|+..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 6643
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=1.2e-07 Score=88.00 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=73.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeecc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYVK 75 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~R 75 (271)
++-|--||.++|++|++.+|.+. |+|.+|+++.|+- | -|||||-+.++++|++||+-++| ..++|+-+|
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~Si---GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcc---cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 47788999999999999999998 9999999999997 4 89999999999999999999977 556888888
Q ss_pred CCCcCcccCCCceEEEeeec
Q 024210 76 RRTPHYKLGDDLKLNFGCQI 95 (271)
Q Consensus 76 pr~~~~~~~~~~~L~~G~~v 95 (271)
|.. -.+ .|+-|++.=+.
T Consensus 120 PSs--~~I-k~aNLYvSGlP 136 (360)
T KOG0145|consen 120 PSS--DSI-KDANLYVSGLP 136 (360)
T ss_pred CCh--hhh-cccceEEecCC
Confidence 874 445 66777775543
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=3.1e-08 Score=96.64 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC--------CeeEEe
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN--------SYLKAS 72 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~--------~~L~~r 72 (271)
+++|||-++..+|+.|+++.|.+| |.|.+|.|..|..+ ||.|||+|++.|-|..||+.++| ..|-|+
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~f---G~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRF---GHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhh---CccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999 99999999999998 99999999999999999999965 456666
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
-+
T Consensus 202 FA 203 (510)
T KOG0144|consen 202 FA 203 (510)
T ss_pred ec
Confidence 66
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=1.1e-07 Score=88.22 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=62.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.|||.||+.++++.-|.++|..+ |.|..|+|+.|-.. +|||||.|++-++|..||..++|..|..|.+
T Consensus 280 ciFvYNLspd~de~~LWQlFgpF---GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPF---GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcc---cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 59999999999999999999999 99999999999984 9999999999999999999998876655543
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.45 E-value=1.5e-07 Score=88.30 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=60.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+++|||+..+.+.+||++-||+| |.|..|+|+ |+||||+|+-.++|..||..+++.+..|+++
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~y---gpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKY---GPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred cccccCCCCccccCHHHhhhhccc---CCceeeeee-----cceeEEEEeeccchHHHHhccccccccccee
Confidence 479999999999999999999999 999999999 8999999999999999999998887777766
No 58
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.7e-08 Score=89.35 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=71.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec------
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV------ 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~------ 74 (271)
=|||||||+..|+.||.-.|++| |+|+++.++.|+.+ +||||.-+++..+--.|++.++|-.|.+|.+
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqy---Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQY---GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEEECCCcccccCCcEEEEeecc---CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 49999999999999999999999 99999999999984 9999999999999999999998877777777
Q ss_pred --cCCCcCcccCCCceEEE
Q 024210 75 --KRRTPHYKLGDDLKLNF 91 (271)
Q Consensus 75 --Rpr~~~~~~~~~~~L~~ 91 (271)
+.+.....+ ++++.++
T Consensus 114 ~Yk~pk~~E~~-d~~t~~L 131 (219)
T KOG0126|consen 114 NYKKPKESEEM-DAVTKEL 131 (219)
T ss_pred cccCCchhhhh-hHHHHHH
Confidence 222334556 6666554
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.34 E-value=6.5e-07 Score=90.22 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=63.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC--C-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG--L-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~--g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++++.|+||+..+.+.|||.+|++| |.|+-++|++.-. | |.||||+|.+.++|.+.|+-+...+|.|+.|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy---GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmI 477 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY---GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMI 477 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh---cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceee
Confidence 5789999999999999999999999 9999999999776 4 9999999999999999999986666666655
No 60
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=90.06 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=61.4
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC------CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL------KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g------RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||.|++++++.++|.+.|... |.|.++.|...+++ .|||||+|.++++|++|+.+++|..|+|..+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~---G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQ---GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhc---CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 9999999999999999999997 99999999987764 4999999999999999999998777777766
No 61
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=2.6e-07 Score=83.90 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=83.6
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec--cCC
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV--KRR 77 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~--Rpr 77 (271)
|.+||||+|+...|+++-|.++|-+. |.|+.|.|..++++ ..||||.|.++-+..-|+++++|-.|.++++ ++|
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiqa---GPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQA---GPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhcc---CceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 45799999999999999999999998 99999999999997 4499999999999999999999988988888 334
Q ss_pred CcC------cccCCCceEEEeeeccCCeeEEeecCCcceeeeecCceEEEE
Q 024210 78 TPH------YKLGDDLKLNFGCQISKDKFSVFWSPENVSVKLCSDLRKFEF 122 (271)
Q Consensus 78 ~~~------~~~~~~~~L~~G~~vs~~~f~v~w~~~~v~v~f~~~~rk~~F 122 (271)
.-. -++ ..-.+|. .|+++=.-++++.+=--|.|...|
T Consensus 85 ~G~shapld~r~-~~ei~~~-------v~s~a~p~~~~R~~~~~d~rnrn~ 127 (267)
T KOG4454|consen 85 CGNSHAPLDERV-TEEILYE-------VFSQAGPIEGVRIPTDNDGRNRNF 127 (267)
T ss_pred cCCCcchhhhhc-chhhhee-------eecccCCCCCccccccccCCccCc
Confidence 211 222 2223333 344444445666655555444433
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=8.1e-07 Score=75.71 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=61.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
-|+|.|+-..++++|+.+.|..| |+|..+.+--||.+ +|||.|++++.++|+.||+++||.+|-+..
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dy---GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADY---GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhc---ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 38999999999999999999999 99999999999984 999999999999999999999886664433
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.4e-06 Score=84.25 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=65.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++||-|++..++.++|++.|+.+ |+|.+++|..+..+ +|||||.|+++++|..|+..++++.+.++++
T Consensus 271 ~nl~vknld~~~~~e~L~~~f~~~---GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l 341 (369)
T KOG0123|consen 271 ANLYVKNLDETLSDEKLRKIFSSF---GEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPL 341 (369)
T ss_pred cccccccCccccchhHHHHHHhcc---cceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCch
Confidence 479999999999999999999999 99999999999988 9999999999999999999998888877776
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.26 E-value=7.5e-07 Score=88.96 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=62.7
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+|||||=.+.++++|+..||.+ |.|..+.+..|.+ | +||||+||.+.+.|.+|..++||-+|-|+.+
T Consensus 281 l~vgnLHfNite~~lr~ifepf---g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPF---GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred hhhcccccCchHHHHhhhccCc---ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceE
Confidence 8999999999999999999999 9999999999975 5 9999999999999999999998877777776
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=9.9e-07 Score=85.14 Aligned_cols=69 Identities=14% Similarity=0.277 Sum_probs=63.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..||||.+++...++.++.-|..+ |.+.++.+--|.-+ +|||||+++-+|+|+.|++.+||..|.||.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PF---GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCC---CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 369999999999999999999999 99999999888864 9999999999999999999997777777766
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=2.8e-06 Score=82.09 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc-----CCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA-----GNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~-----g~~~L~~r~ 73 (271)
..|||..+-.+.+++|+|..||.+ |++..|.+..+..+ |||||++|.+..+-..||..+ ||++|++-.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAF---G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhh---cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 369999999999999999999999 99999999998885 999999999999999999876 889997653
No 67
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.18 E-value=3e-06 Score=83.30 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=62.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA----GNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~ 74 (271)
+.+|||.|||.+++.++|+++|.++ |.|...+|..-..+ -.||||+|.+.++++.||.+. |++.|.+.+=
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F---G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF---GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc---ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 4579999999999999999999999 99999888864432 499999999999999999987 7788877775
Q ss_pred cC
Q 024210 75 KR 76 (271)
Q Consensus 75 Rp 76 (271)
|+
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 44
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=1.3e-06 Score=79.07 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=57.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
..+|||+||+.+.++||.+||..| |.+.+|.++ -|||||+|+++.+|+.|+..+++.+|.+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y---g~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY---GKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc---cccccceee-----cccceeccCchhhhhcccchhcCceeccee
Confidence 468999999999999999999999 999999998 699999999999999999999887775553
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.14 E-value=3.4e-06 Score=87.28 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=54.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
++||+||+|+.++++.||++.||+| |+|.++.++.. ||+|||.|....+|++|+.++..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef---GeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF---GEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc---ccceeEeeccC---CceeEEEEeehhHHHHHHHHHhc
Confidence 4799999999999999999999999 99999999844 79999999999999999999853
No 70
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.14 E-value=2e-06 Score=78.40 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=62.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.++|||+++.++.++++..|+.+ |.+.++.|.+|+.. +|||||+|.+.+.+++|+. +|+..|.++++
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~C---g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESC---GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred ceEEEeccccccccchhhheeecc---CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 579999999999999999999986 99999999999984 9999999999999999999 78888877776
No 71
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.13 E-value=8.2e-06 Score=73.31 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=59.2
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcC-----CCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAG-----NSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g-----~~~L~~r~~ 74 (271)
+||+.+|...-+.++..+|.++. |+|.+.++...+. | ||||||+|++++.|+-|.+.|| ++.|.++.+
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred eeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 68999999999999999999986 9999999976665 4 9999999999999999999885 466666665
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=3.7e-06 Score=78.51 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=65.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCe-----eEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSY-----LKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~-----L~~r~ 73 (271)
|.+|||..||..-.+.||-..|-.+ |.|++.+|..||-+ +-||||.|+++.+|+.||.++||-. |||.-
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PF---GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPF---GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccc---cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4689999999999999999999999 99999999999984 9999999999999999999998843 45554
Q ss_pred ccCCC
Q 024210 74 VKRRT 78 (271)
Q Consensus 74 ~Rpr~ 78 (271)
-||++
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 47764
No 73
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.08 E-value=8.3e-06 Score=73.91 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=62.3
Q ss_pred eEEEeCCCCCCcHHHHHH----HHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeecc
Q 024210 4 MITLSGFASPVSPKALKD----FLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVK 75 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~----~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~R 75 (271)
||||-||+..+..+||+. +|++| |+|.++.......-||=|||.|.+.++|..|+.++.|-..-++++|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqf---G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQF---GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhh---CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 999999999999999999 99999 9999988876554599999999999999999999988777777773
No 74
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.08 E-value=1.4e-05 Score=79.23 Aligned_cols=67 Identities=22% Similarity=0.422 Sum_probs=56.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLA----GNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~ 74 (271)
-|.+-||||++|++||.+||+.. +|.++++..+... .|=|||+|+++|++++|+++- +.++|.|-++
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~----~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNC----GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcC----ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 48899999999999999999996 7888444433222 899999999999999999875 8899998888
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.99 E-value=1.4e-05 Score=73.68 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|+|.|||+.|+++||+++|+++ |.+.++-|-+|+.| -|=|=|.|...++|+.|++..++-.|+|+++
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~---~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEF---GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHh---ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 369999999999999999999999 89999999999998 7999999999999999999997777777776
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.92 E-value=2.2e-05 Score=75.21 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=52.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
+|+||||+-..+++.||.+.|.+| |++..+++... +|-|||+|++.++|+.|..+.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqy---Geirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQY---GEIRSIRILPR---KGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhc---CCeeeEEeecc---cccceeeehhhHHHHHHHHhh
Confidence 589999998899999999999999 99999999865 479999999999999999886
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=82.64 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=59.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+|-|-|+|+.++-++++++|..+ |.+..|+|+.-.. + ||||||+|-++.+|.+|++++++.-|-||-+
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aF---GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAF---GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcc---cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhh
Confidence 68999999999999999999999 9999999997622 2 9999999999999999999987655556544
No 78
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.84 E-value=1.7e-05 Score=70.44 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=59.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE-EEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSD-VEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+++||||+..++++-|-+.|+.+ |.+.+ -+|..|..+ +|||||-|++.|++.+||..++|+.+.-|++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsaf---G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAF---GVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhc---cccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 3579999999999999999999999 77654 477777763 9999999999999999999998877755544
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.77 E-value=3.6e-05 Score=75.92 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=59.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~R 75 (271)
.+|+|-|+|.+.|++-|+|-|.++ |.|.-++| ..+.. +| .|.|.++++|+.|+.+++++.|++|.++
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~---G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREI---GHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhc---cceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 479999999999999999999998 99999999 33322 66 9999999999999999999888888763
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.72 E-value=8.7e-05 Score=67.97 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=52.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEec-CCCC---CCeEEEEeCCHHHHHHHHHHcCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQ-NKGL---KAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~-dr~g---RGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
+|+||+|||.++...||-.+|..+-|. ..+-++. ++.+ +.+|||+|++..+|..|+++++|
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GY---EgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGY---EGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCc---cceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC
Confidence 699999999999999999999998653 4455654 4433 89999999999999999999976
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=6.1e-05 Score=70.54 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=62.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC--------CeeEEe
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN--------SYLKAS 72 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~--------~~L~~r 72 (271)
+++|||=|...-++||++.+|..+ |.+.+|.+....+| +|-|||.|.+..+|..||+.+.| +.|.|+
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pf---G~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPF---GNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhccc---CCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 679999999999999999999999 99999999998887 99999999999999999999833 566666
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
-+
T Consensus 97 ~A 98 (371)
T KOG0146|consen 97 FA 98 (371)
T ss_pred ec
Confidence 66
No 82
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00047 Score=69.01 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=64.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec--cCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV--KRR 77 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~--Rpr 77 (271)
+||||||+|.-++|+||+.+|+..- |-|.=+-|-||.+ . +|=|.|+|.+..+=.+||.+ +.+...-. ..|
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~ly--GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa---rFvql~h~d~~KR 445 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLF--GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA---RFVQLDHTDIDKR 445 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhc--CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh---heEEEecccccee
Confidence 7999999999999999999999543 9999999999976 4 99999999999999999998 45544433 112
Q ss_pred --CcCcccCCCc
Q 024210 78 --TPHYKLGDDL 87 (271)
Q Consensus 78 --~~~~~~~~~~ 87 (271)
..||-| ||.
T Consensus 446 VEIkPYv~-eDq 456 (520)
T KOG0129|consen 446 VEIKPYVM-EDQ 456 (520)
T ss_pred eeecceec-ccc
Confidence 467777 664
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.37 E-value=0.00045 Score=68.81 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=55.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEE-EEEecCCCC--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSD-VEVGQNKGL--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~ 74 (271)
.|.+-||||++|++|+.+||+.. -.|-+ +-+..|+.+ -|=|||||++.+.|++|+..- |.+++.+-++
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL---~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGL---EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCC---cccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 58899999999999999999986 33333 335566666 799999999999999999765 7888877766
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.31 E-value=0.001 Score=53.42 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=59.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
.||-+-|||...|.++|.+.+++.+ .|+-.=+-++.|-.+ +|||||-|.++++|..-.+..+|+.++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~-~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF-KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc-cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 4789999999999999999999875 688777888888764 9999999999999999999987766643
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.29 E-value=0.00045 Score=71.47 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=64.5
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC------CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL------KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g------RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|-.++||||++.+++++.|..-|..| |.|.+++|..+|.- |--|||-|-+..+|+.|++.+.|..+...++
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf---gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF---GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc---CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45689999999999999999999999 99999999998862 8899999999999999999998887777666
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.27 E-value=0.00024 Score=65.94 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=64.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccCC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRR 77 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rpr 77 (271)
.||.|.+...++.+-|..-|.++ =.-...+++.|+++ +|||||-|.+++++..|+..++|.++.-|+++-|
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kf---psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKF---PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred eeecccccccccHHHHHHHHHhc---cchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 59999999999999999999999 67788999998884 9999999999999999999999999888887433
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00022 Score=71.75 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++.|-|+|.+|+.++|...|+.| |+|..++ ..+..||+.||+|=|..+|+.|+++++++++-++.+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~y---Geir~ir--~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAY---GEIREIR--ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhh---cchhhhh--cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 589999999999999999999999 9998733 222229999999999999999999998877777666
No 88
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00084 Score=65.07 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=56.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNS 67 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~ 67 (271)
+-+||-.|..-++.+||.-.|+.+ |+|..|+|+.|+.+ =-||||+|++.++.++|-=+|+.-
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrF---G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv 304 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRF---GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV 304 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhc---ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce
Confidence 358999999999999999999999 99999999999984 789999999999999998887554
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.99 E-value=0.0019 Score=62.20 Aligned_cols=68 Identities=13% Similarity=0.290 Sum_probs=58.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEE--------EEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVS--------DVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--------~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.|||+|||.++|-+|..++|... |-|- .|++-.+..| +|=|-+.|--.|+.+.|+..+++..|++..
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKc---GiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKC---GIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhc---ceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 49999999999999999999996 6664 4777778877 999999999999999999999665555554
Q ss_pred c
Q 024210 74 V 74 (271)
Q Consensus 74 ~ 74 (271)
+
T Consensus 213 ~ 213 (382)
T KOG1548|consen 213 L 213 (382)
T ss_pred E
Confidence 4
No 90
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.96 E-value=0.0025 Score=45.37 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=43.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHH
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIM 61 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai 61 (271)
+.|.|.|+|.+.. +++.++|.++ |+|.+..+. +++...+|+|.++.+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f---GeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF---GEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc---CCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 5799999997754 6666688887 999998887 22689999999999999984
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.80 E-value=0.00074 Score=63.44 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=59.4
Q ss_pred eEE-EeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MIT-LSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~-Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++ |+|++.+++.++|+++|... |.|..+++.+++++ +|||+|.|.+...+..|+.. +.+.+-++++
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~---~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSS---GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL 256 (285)
T ss_pred cceeecccccccchHHHhhhccCc---CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence 577 99999999999999888876 99999999999985 99999999999999999987 6666666655
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.60 E-value=0.006 Score=49.26 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=36.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
.-|++.|++..++.++|++.|+++ |.|.=|.+.. |-.-|+|.|.++++|+.|++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~---g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF---GEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE--T---T-SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc---CCcceEEecC---CCCEEEEEECCcchHHHHHHHH
Confidence 458899999999999999999999 8877666654 3468999999999999999987
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.54 E-value=0.0034 Score=61.42 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=48.9
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcC-CceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHc
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTG-EGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g-~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
|++-|||+++++.|+.+||...|- .|-+..+-.++..+| .|-|||.|+.+++|+.|+.+-
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH
Confidence 788999999999999999975441 145566666666666 899999999999999999764
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.50 E-value=0.00094 Score=67.25 Aligned_cols=64 Identities=27% Similarity=0.427 Sum_probs=56.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+|+++.-++..+++.||.+||+.. |+|-+|+++.|+.. +|-|+|+|-|.+....||.+.|.+.|
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~---gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrll 246 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIV---GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLL 246 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhh---cCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCccc
Confidence 466667778889999999999998 99999999999984 99999999999999999988765443
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.36 E-value=0.0016 Score=59.24 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=53.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+.|-|++..+.+.+|++.|+++ |.+..... .+++|||+|++.++|..|++++.+..+.++.+
T Consensus 101 r~~~~~~~~r~~~qdl~d~~~~~---g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 101 RLIVRNLSLRVSWQDLKDHFRPA---GEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred eeeeccchhhhhHHHHhhhhccc---CCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCcee
Confidence 47789999999999999999999 88833333 38999999999999999999998777766655
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.31 E-value=0.015 Score=57.30 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=80.3
Q ss_pred eEEEeCC-CCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec--------
Q 024210 4 MITLSGF-ASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV-------- 74 (271)
Q Consensus 4 tI~Vgnl-p~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~-------- 74 (271)
.|-|+|+ +..+|.+-|-.+|.-| |.|.+++|...+ +-.|-|||.|...|+.|++.++|+.|-++.+
T Consensus 299 vllvsnln~~~VT~d~LftlFgvY---GdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVY---GDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhh---cceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 4667776 5678999999999999 999999999888 4789999999999999999998766655544
Q ss_pred ---------------cC--CCcCccc------------CCCceEEEeeec---cCCeeEEeecCCcceee
Q 024210 75 ---------------KR--RTPHYKL------------GDDLKLNFGCQI---SKDKFSVFWSPENVSVK 112 (271)
Q Consensus 75 ---------------Rp--r~~~~~~------------~~~~~L~~G~~v---s~~~f~v~w~~~~v~v~ 112 (271)
|+ ..+.+|+ |+..+||.-... ++++.-.+|..++-.|+
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vk 443 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK 443 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEE
Confidence 11 1233444 456788887764 78888888888766553
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.31 E-value=0.0043 Score=57.09 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=51.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK 70 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~ 70 (271)
.|+||.||..++++++|+.+|..|-| -...+|. .|.|-.-|||+|++.|.|..||.-+-|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~g---f~~l~~~-~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPG---FHILKIR-ARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCC---ceEEEEe-cCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 48999999999999999999999963 2344432 3334789999999999999999987665553
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.63 E-value=0.042 Score=43.60 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=39.3
Q ss_pred eEEEeCCCCCCcHHHHH----HHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 4 MITLSGFASPVSPKALK----DFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
.++|.|||.+.+...++ .+.++. | |.|..+- .|=|++.|.+++.|+.|.+.++|...=|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNC-G-GkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNC-G-GKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTT-T---EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhcc-C-CEEEEEe-------CCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 58999999999887654 555564 4 8888773 4889999999999999999997644433
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.60 E-value=0.023 Score=55.10 Aligned_cols=70 Identities=17% Similarity=0.358 Sum_probs=58.1
Q ss_pred eEEEeCCCCCCcHHHH------HHHHhcCcCCceEEEEEEecCCC--C--CCeE--EEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 4 MITLSGFASPVSPKAL------KDFLEEHTGEGTVSDVEVGQNKG--L--KAHA--VVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 4 tI~Vgnlp~~vta~dL------k~~Fe~~~g~G~V~~v~I~~dr~--g--RGFa--FVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
-+||-|||..+..|++ .+||.+| |.|..+-|-..-. + -+|+ +++|.+.|+|..+|.+.+|+.++|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQy---GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQY---GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhc---cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3899999999999983 4799999 9998766643321 2 6777 999999999999999999999999
Q ss_pred eeccC
Q 024210 72 SYVKR 76 (271)
Q Consensus 72 r~~Rp 76 (271)
|.+|.
T Consensus 193 r~lka 197 (480)
T COG5175 193 RVLKA 197 (480)
T ss_pred ceEee
Confidence 98843
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.43 E-value=0.028 Score=58.65 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=55.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
-|.+-|+|++++-+|+.+||..|- =.--++++....+| .|=+.|-|++.++|..|...++++.|.-|
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~--~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr 937 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYE--PDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR 937 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccc--cCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce
Confidence 488999999999999999999992 12256777777777 89999999999999999988777666444
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.30 E-value=0.011 Score=59.70 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
.+|+|||+|...++.+++|..+.+ |....-+++.|.. | +||||-+|.++.-...|++.++|..|
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~f---g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSF---GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhc---ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 369999999999999999999999 9999999999988 3 99999999999999999998865444
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.23 E-value=0.051 Score=49.61 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=50.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
.++++.|+|..++.+.|.++|+++.|- ..++.+..+ ++.|||+|.++..|..|.+.+.+-.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~---keir~i~~~--~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGF---KEIRLIPPR--SGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCccc---ceeEeccCC--CceeEEecchhhhhHHHhhhhcccee
Confidence 468999999999999999999999644 455555444 79999999999999999888765433
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.95 E-value=0.054 Score=53.59 Aligned_cols=59 Identities=22% Similarity=0.171 Sum_probs=46.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
+|+..+|+|.++++|||++.|.+. |-++....-..+ +|-.|.+|+++.|+|..|+-.+.
T Consensus 415 atlHlsnip~svsee~lk~~f~~~---g~~vkafkff~k-d~kmal~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEP---GGQVKAFKFFQK-DRKMALPQLESVEEAIQALIDLH 473 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcC---CceEEeeeecCC-CcceeecccCChhHhhhhccccc
Confidence 589999999999999999999998 444333333222 17899999999999999987763
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.035 Score=56.71 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=52.6
Q ss_pred eEEEeCCCCCCcHH------HHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 4 MITLSGFASPVSPK------ALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 4 tI~Vgnlp~~vta~------dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
-|.|.|+|---.++ -|...|+++ |+++...++.+.+| +||.|+++++..+|+.|++.++|..|
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~---gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKA---GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhh---ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 37788888654443 356789998 99999999988886 99999999999999999999987555
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.064 Score=54.14 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=49.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEec--CCCC----CC---eEEEEeCCHHHHHHHHHHc----CCCe
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQ--NKGL----KA---HAVVEFTTVEAADLIMSLA----GNSY 68 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~--dr~g----RG---FaFVeF~~~e~A~~Ai~~~----g~~~ 68 (271)
+++|+||||||++++++|...|..+ |.+. |+=.. ...+ +| |+|.-|+++.+...-+++- ++.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~F---Gs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQF---GSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccc---cceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 3689999999999999999999999 7752 22221 1111 77 9999999988887766653 4555
Q ss_pred eEEee
Q 024210 69 LKASY 73 (271)
Q Consensus 69 L~~r~ 73 (271)
++++.
T Consensus 335 f~vss 339 (520)
T KOG0129|consen 335 FKVSS 339 (520)
T ss_pred EEEec
Confidence 66653
No 106
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.69 E-value=0.012 Score=54.79 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHh-cCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 17 KALKDFLE-EHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 17 ~dLk~~Fe-~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||-..|+ +| |+|..+.|...... +|-++|+|..+|+|++|++.+|++...++|+
T Consensus 83 Ed~f~E~~~ky---gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 83 EDVFTELEDKY---GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred HHHHHHHHHHh---hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 44444555 67 99999977766654 9999999999999999999999999999988
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.67 E-value=0.041 Score=54.09 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=56.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHc-----CCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLA-----GNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~-----g~~~L~~r~~ 74 (271)
-|++-|||+.++-||+.+||.++.-.=.-..|.++....| -|=|||||.++|+|..|...- ..+++.+-+.
T Consensus 282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4889999999999999999999851112234788888887 799999999999999988754 3567766654
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.25 E-value=0.11 Score=41.83 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=42.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCC----------CCCCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK----------GLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr----------~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
-|.|-|+|.. ....+.+.|+++ |+|.+..-.... .+...-.++|+++.+|.+|+...
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~---G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~N 74 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSF---GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKN 74 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCC---S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTT
T ss_pred EEEEEccCHH-HHHHHHHHHHhc---ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhC
Confidence 5889999999 778899999998 999777522211 12789999999999999999984
No 109
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.08 E-value=0.065 Score=51.85 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE--------EEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSD--------VEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN----- 66 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--------v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~----- 66 (271)
.||||-++|-++++.++.+||-+. |.|.+ +.|-+|+++ +|=|.|.|+|+.+|+.||.-.++
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qc---g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQC---GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhc---ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 489999999999999999999996 77643 344456664 99999999999999999987744
Q ss_pred CeeEEeeccCCC
Q 024210 67 SYLKASYVKRRT 78 (271)
Q Consensus 67 ~~L~~r~~Rpr~ 78 (271)
..+++..++.|+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 455666654443
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.79 E-value=0.07 Score=52.98 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=59.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecC---CCC-------------CCeEEEEeCCHHHHHHHHHHcC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQN---KGL-------------KAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~d---r~g-------------RGFaFVeF~~~e~A~~Ai~~~g 65 (271)
++||-+-|||.+-.-+-|.++|..+ |.|..+||..+ .+. +-.|+|+|+..++|.+|-++++
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~---G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTV---GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcc---cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4799999999999999999999998 99999999987 321 5679999999999999999983
Q ss_pred C-----CeeEEeec
Q 024210 66 N-----SYLKASYV 74 (271)
Q Consensus 66 ~-----~~L~~r~~ 74 (271)
. .-|+++-+
T Consensus 308 ~e~~wr~glkvkLl 321 (484)
T KOG1855|consen 308 PEQNWRMGLKVKLL 321 (484)
T ss_pred hhhhhhhcchhhhh
Confidence 2 44566555
No 111
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.77 E-value=0.09 Score=55.06 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=47.4
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCc-CCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHT-GEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~-g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
|+--|.+-||||.+.+.|++.||+... =.|- |.|+--. -|=|||-|++.|+|..|+-+-
T Consensus 1 MsVIIRLqnLP~tAga~DIR~FFSGL~IPdGg---VHIIGGe--~GeaFI~FsTDeDARlaM~kd 60 (944)
T KOG4307|consen 1 MSVIIRLQNLPMTAGASDIRTFFSGLKIPDGG---VHIIGGE--EGEAFIGFSTDEDARLAMTKD 60 (944)
T ss_pred CceEEEecCCcccccchHHHHhhcccccCCCc---eEEeccc--ccceEEEecccchhhhhhhhc
Confidence 778899999999999999999999753 1222 3444221 799999999999999999874
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.74 E-value=0.19 Score=45.37 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=49.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
.|-|+|||.+.+++|||+...+. |.|.=.++..| |.|.|+|...|+-+-|+.+++
T Consensus 117 RVvVsGLp~SgSWQDLKDHmRea---GdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREA---GDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhh---CCeeeeeeecc----cceeeeeeehhhHHHHHHhhc
Confidence 48899999999999999999998 99988887755 689999999999999999884
No 113
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.47 E-value=0.056 Score=52.71 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=53.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
.+|||||-|-+|++||.+.+.+. |--.+.+++....|.+ +|||.|-..+.++..+-++.+-.++|.|.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 38999999999999999999985 3334455555556654 99999999999999999999866666554
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.06 E-value=0.35 Score=35.95 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=46.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
+|+|-|++. .+.+|++.||..|.......+++=+-|.. +=|-|.+++.|.+|+.++
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS----cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS----CNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc----EEEEECCHHHHHHHHHcC
Confidence 689999865 79999999999996545678888887764 569999999999999764
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=92.98 E-value=0.2 Score=50.75 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCceEEEEEEecC-CCC-----CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 28 GEGTVSDVEVGQN-KGL-----KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 28 g~G~V~~v~I~~d-r~g-----RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.|.|..|+|..+ .+. -|--||+|++.++++.|++++.|+...+|.+
T Consensus 432 k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 432 KFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred ccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 3499999999988 332 7889999999999999999998887776655
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.93 E-value=0.24 Score=48.08 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=44.7
Q ss_pred HHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 17 KALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 17 ~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||++=.+++ |.|.+|.|.. +...|-+-|.|.+.++|+.+|..+.|+...+|.+
T Consensus 291 edl~eec~K~---G~v~~vvv~d-~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 291 EDLTEECEKF---GQVRKVVVYD-RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred HHHHHHHHHh---CCcceEEEec-cCCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 4555556777 9999987764 4346999999999999999999999999988877
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.19 E-value=0.085 Score=49.34 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=55.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-----------C----CeEEEEeCCHHHHHHHHHHcCCCe
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-----------K----AHAVVEFTTVEAADLIMSLAGNSY 68 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-----------R----GFaFVeF~~~e~A~~Ai~~~g~~~ 68 (271)
-||++|||......-|+++|+.| |.|-+|-+...... + -=|.|+|.+-..|......+|+..
T Consensus 76 VvylS~IPp~m~~~rlReil~~y---GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQY---GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhc---cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 39999999999999999999999 99999999864431 1 127899999999999888888877
Q ss_pred eEEee
Q 024210 69 LKASY 73 (271)
Q Consensus 69 L~~r~ 73 (271)
+.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 76653
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.25 E-value=0.53 Score=45.15 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCcCCceEEEEEEecCCCC----CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC
Q 024210 16 PKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR 76 (271)
Q Consensus 16 a~dLk~~Fe~~~g~G~V~~v~I~~dr~g----RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp 76 (271)
+++.++-.|+| |+|.+|-|..+..- .---||||+..++|.+|+-.+||++..||.++.
T Consensus 300 ede~keEceKy---g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKY---GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhh---cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 46677788888 99999999877542 344799999999999999999999999998754
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.78 E-value=0.026 Score=59.75 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=48.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC--C-CCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG--L-KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~--g-RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
|++|+|++......||...|..+ |.+..++|..... . ||.|+|+|.++++|.+|+...
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~---~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPS---GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCcc---chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 68899999999999999999998 5555555553333 3 999999999999999999865
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.18 E-value=0.12 Score=54.90 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=54.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
.++|.|.|...|.++|+..+..+ |+|.+.++++.+.| +|-|+|.|.++.+|..+....
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~---gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKT---GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhheeCCCCCCchHHHHhhcccc---CCccccchhhhhccccccceeccCCCcchhhhhcccc
Confidence 58899999999999999999998 99999999999998 999999999999999987765
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.12 E-value=0.12 Score=55.37 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=57.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
.|+++||++.++++.+++..|+.+ |.|.+|+|++.+-+ -.||||-|.+-.++-.|...+.+..|
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~---gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDES---GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhh---ccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc
Confidence 589999999999999999999999 99999999999765 78999999999988888777655544
No 122
>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification]
Probab=87.86 E-value=0.13 Score=47.30 Aligned_cols=28 Identities=54% Similarity=0.757 Sum_probs=22.2
Q ss_pred CcccceeEEEEEeeCccCCCCccccccc
Q 024210 243 GVSKLARILNVKRHGGAHHARSNSLLTS 270 (271)
Q Consensus 243 ~~~lpyeIlflv~~g~~~~~~~~~~~~~ 270 (271)
|..--.+.|=+.|.|+.||||||||||+
T Consensus 202 GL~~lA~~L~~~RvG~~HqAGSDSlLT~ 229 (239)
T KOG0304|consen 202 GLQRLADLLGLKRVGIAHQAGSDSLLTA 229 (239)
T ss_pred CHHHHHHHhCCCeeecccccCcHHHHHH
Confidence 3344445555999999999999999997
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.69 E-value=0.86 Score=42.77 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=54.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHc
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
-+-+||-|++..++-+.|.+-|+.+ |.|.+.-++.|..+ -|=++|+|+..-+|.+|....
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~f---g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRF---GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhc---CccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 3569999999999999999999999 99999888888876 788999999999999998876
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.25 E-value=0.67 Score=43.68 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=58.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+.|+|+..+.+...+...++.++ |.+..+.....+.. +|++.|+|...+.+..|+..++...+.++..
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~---g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEA---GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccchhhccccccchhh---cCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 478999999999999999999998 99999998886653 9999999999999999999876554544433
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=83.82 E-value=1.4 Score=43.63 Aligned_cols=60 Identities=10% Similarity=0.261 Sum_probs=52.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC------CCeEEEEeCCHHHHHHHHHHcCC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL------KAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g------RGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
-|.|.||+.+++.+++..+|... |.|-.++|...-+. .--+||-|.|...+..|-.+-+.
T Consensus 9 vIqvanispsat~dqm~tlFg~l---GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtnt 74 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNL---GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNT 74 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhc---cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccc
Confidence 59999999999999999999998 99999999874442 88999999999999888766543
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=82.21 E-value=5.3 Score=39.64 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred eEEEeCCCCC-CcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCe-----eEEeeccC-
Q 024210 4 MITLSGFASP-VSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSY-----LKASYVKR- 76 (271)
Q Consensus 4 tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~-----L~~r~~Rp- 76 (271)
-+-|.||+.. .+-+.|-.+|=.| |.|.+++....+ .|=|.|||.|+.+.++|+.-+++.. |++...+.
T Consensus 289 VmMVyGLdh~k~N~drlFNl~ClY---GNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 289 VMMVYGLDHGKMNCDRLFNLFCLY---GNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred EEEEEeccccccchhhhhhhhhhc---CceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 4668888875 4557788888888 999999999877 5789999999999999999886543 44444422
Q ss_pred C---CcCcccCCCce
Q 024210 77 R---TPHYKLGDDLK 88 (271)
Q Consensus 77 r---~~~~~~~~~~~ 88 (271)
. ..+|-+ +|..
T Consensus 364 ~v~~~~pflL-pDgS 377 (494)
T KOG1456|consen 364 FVSPVQPFLL-PDGS 377 (494)
T ss_pred ccccCCceec-CCCC
Confidence 1 256666 5543
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=78.42 E-value=1.9 Score=43.26 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=48.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC-CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN-SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~-~~L~~r~~ 74 (271)
.++|+|||+..++..||...|... ++....+- -|||||...+..-|.+||+.++| .+|.|...
T Consensus 2 nklyignL~p~~~psdl~svfg~a---------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~ 68 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA---------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQ 68 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc---------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCcee
Confidence 368999999999999999999875 22222221 69999999999999999998843 45555544
No 128
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=78.09 E-value=1.3 Score=46.25 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
|.-|++|||+.+.+..+=++..++.. |-|..++... |||.+|.....+..|+.++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~---g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~ 93 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKS---GFVPSWKRDK------FGFCEFLKHIGDLRASRLL 93 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhC---Ccchhhhhhh------hcccchhhHHHHHHHHHHh
Confidence 44689999999999999999999986 9999988774 9999999999999999887
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=77.17 E-value=15 Score=30.01 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=54.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
.+-+...|+.++.++|..|.+.+. ..|..+||+.|... |==+-+.|.+.++|..--...||+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~--~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFR--EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhccc--ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 355778899999999998888876 78999999988775 88899999999999999888887544
No 130
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=75.27 E-value=10 Score=32.74 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc----CCCeeEEee
Q 024210 18 ALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA----GNSYLKASY 73 (271)
Q Consensus 18 dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~ 73 (271)
+|.+-|+++ |+|.=+|... +-=.|+|.+.+.|-+|+++. +|+.|+++.
T Consensus 52 ~ll~~~~~~---GevvLvRfv~-----~~mwVTF~dg~sALaals~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQY---GEVVLVRFVG-----DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCC---S-ECEEEEET-----TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE
T ss_pred HHHHHHHhC---CceEEEEEeC-----CeEEEEECccHHHHHHHccCCcEECCEEEEEEe
Confidence 777888888 9999999884 55799999999999999885 445555554
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=69.73 E-value=13 Score=37.06 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=53.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
+++..-|-|-.+|++.|-+++.+.. =.-.+++|..-|.- ---|..||++.++|..|+.++|...+++
T Consensus 407 ~vLHffNaP~~vtEe~l~~i~nek~--v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 407 NVLHFFNAPLGVTEEQLIGICNEKD--VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred ceeEEecCCCccCHHHHHHHhhhcC--CCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccC
Confidence 5788999999999999999999872 12356666666643 4678999999999999999987776644
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=65.49 E-value=5.8 Score=41.36 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=48.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
+-|||.||=.-.|..+|++++..-+ |.|... .+|+- +-|+||.+.+.++|.+-+.++
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtg--g~Vee~--WmDkI-KShCyV~yss~eEA~atr~Al 501 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTG--GNVEEF--WMDKI-KSHCYVSYSSVEEAAATREAL 501 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhcc--CchHHH--HHHHh-hcceeEecccHHHHHHHHHHH
Confidence 4699999999999999999999875 777665 55443 699999999999999988888
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=64.94 E-value=8.7 Score=39.52 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=40.3
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
+.+-|+|.+-|..-|.+.-|+.. |+=.=+.++.|-.+ -|||||.|++++++..+-++.+|
T Consensus 391 ~~iknipNK~T~~ml~~~d~~~~--gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnG 453 (549)
T KOG4660|consen 391 LMIKNIPNKYTSKMLLAADEKNK--GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNG 453 (549)
T ss_pred hHhhccCchhhHHhhhhhhcccc--CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcC
Confidence 33445555555555555544433 45444555655554 89999999999999999998865
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=63.59 E-value=19 Score=26.72 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHhcCcC--CceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 12 SPVSPKALKDFLEEHTG--EGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 12 ~~vta~dLk~~Fe~~~g--~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..++..+|..++.+.+| ...|-+++|. .-|+||+-.. +.|+.+++.+++..++++++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 45788999999998864 4456677776 6899999955 67889999886655555543
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.01 E-value=30 Score=33.52 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=46.2
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|-|.|||.. ...-|...|+++ |+|.+. ++.+.| .+-.|.+.+.-+|++|+++. |..|++..+
T Consensus 200 VTVfGFppg-~~s~vL~~F~~c---G~Vvkh--v~~~ng-NwMhirYssr~~A~KALskn-g~ii~g~vm 261 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRC---GEVVKH--VTPSNG-NWMHIRYSSRTHAQKALSKN-GTIIDGDVM 261 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhh---Ceeeee--ecCCCC-ceEEEEecchhHHHHhhhhc-CeeeccceE
Confidence 678899887 456677889997 999754 444444 79999999999999999994 444444433
No 136
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.54 E-value=6.6 Score=37.81 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHH
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAA 57 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A 57 (271)
.||++|||.++.-+|||.-+.+. |-+ -+.....| +|-+|.+|.+..++
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~---~~~---pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKR---ECT---PMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ceeeccCccccchHHHHHHHHhc---CCC---ceeEeeecCCcceeEecCCccCC
Confidence 49999999999999999999986 322 22234446 89999999987654
No 137
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=59.31 E-value=11 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEeCCHHHHHHHHHHc---CCCeeEEeec
Q 024210 47 AVVEFTTVEAADLIMSLA---GNSYLKASYV 74 (271)
Q Consensus 47 aFVeF~~~e~A~~Ai~~~---g~~~L~~r~~ 74 (271)
|||+|++.++|+.|.+.. .++.++++++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeC
Confidence 799999999999999865 3344455544
No 138
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.95 E-value=36 Score=26.93 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHc------CCCeeEEeeccCCCcCcccCCCceEEEeeeccCCeeEEe
Q 024210 47 AVVEFTTVEAADLIMSLA------GNSYLKASYVKRRTPHYKLGDDLKLNFGCQISKDKFSVF 103 (271)
Q Consensus 47 aFVeF~~~e~A~~Ai~~~------g~~~L~~r~~Rpr~~~~~~~~~~~L~~G~~vs~~~f~v~ 103 (271)
|.++|++++-|++.++.- ++..++++ ..|+.++.-.++++-+.+|+.+..+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~-----v~P~~~~~~~k~qv~~~vs~rtVlvs 58 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK-----VSPVTLGHLQKFQVFSGVSKRTVLVS 58 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE-----EEeEecCCceEEEEEEcccCCEEEEe
Confidence 679999999999988763 33333333 23555556678889999999886654
No 139
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.83 E-value=8.3 Score=31.75 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHH
Q 024210 14 VSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEA 56 (271)
Q Consensus 14 vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~ 56 (271)
.+.++|++.|..+. .+ +++...++.+ +|++.|+|...-+
T Consensus 29 ~~~~~l~~~l~~f~---p~-kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFN---PL-KVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH------S-EEEEEEETTEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcC---Cc-eeEECcCCCCCcEEEEEEECCChH
Confidence 57799999999983 32 4666677777 9999999987544
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=50.40 E-value=35 Score=35.59 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=50.4
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc--CCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA--GNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~--g~~~L~~r~~ 74 (271)
|-+--||.++-.|++|.+|... .|=.+.+|+...... =||+|+++++|+.|-..+ --.++.++++
T Consensus 178 vilREIpettp~e~Vk~lf~~e-ncPk~iscefa~N~n----WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGE-NCPKVISCEFAHNDN----WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred EEEeecCCCChHHHHHHHhccC-CCCCceeeeeeecCc----eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 5577899999999999999863 346899999876552 499999999999999887 2233444444
No 141
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=48.51 E-value=3.7 Score=38.26 Aligned_cols=11 Identities=55% Similarity=0.984 Sum_probs=7.8
Q ss_pred eeeeccCCCCc
Q 024210 174 VREVDFTPSSS 184 (271)
Q Consensus 174 iRttDFTps~s 184 (271)
||.||||||.-
T Consensus 134 iRDT~FTPSHi 144 (251)
T PF04896_consen 134 IRDTDFTPSHI 144 (251)
T ss_dssp --SSSTSHHHH
T ss_pred eecCCCChHHH
Confidence 89999999944
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=47.52 E-value=39 Score=29.59 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=41.2
Q ss_pred eEEEeCCCCC----CcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASP----VSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~----vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
||-|-=+..+ -+-+.+-..++.+ |+|.+|... ||--|.|.|.|-.+|=+|+++..
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~f---GpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVF---GPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhc---CCcceeeec----CCceEEEEehhhHHHHHHHHhhc
Confidence 5666444333 3344555667777 999998876 68889999999999999999973
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=47.30 E-value=31 Score=37.69 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=48.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
..+++||++.-+....|..-|..+ |.|..+.+ ++ |-.||+|+.++..+|+.|...+
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~f---Gpir~Idy--~h-gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRF---GPIRIIDY--RH-GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhcc---Ccceeeec--cc-CCcceeeecccCccchhhHHHH
Confidence 358999999999999999999999 99877443 33 3699999999999999999887
No 144
>TIGR03078 CH4_NH3mon_ox_C methane monooxygenase/ammonia monooxygenase, subunit C. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit C of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.87 E-value=6.3 Score=36.06 Aligned_cols=11 Identities=64% Similarity=0.993 Sum_probs=9.5
Q ss_pred eeeeeccCCCC
Q 024210 173 WVREVDFTPSS 183 (271)
Q Consensus 173 WiRttDFTps~ 183 (271)
=||.||||||.
T Consensus 121 ~iRDt~FTPsH 131 (229)
T TIGR03078 121 IVRDTDFTPSH 131 (229)
T ss_pred eeecCCCChHH
Confidence 38999999993
No 145
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.04 E-value=82 Score=24.22 Aligned_cols=61 Identities=18% Similarity=0.023 Sum_probs=48.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
+-|+-..+.+++-.|+++.+|+.-|- +|.+|+...-+.+.-=|+|++...+.|......+|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V-kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV-KVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhc
Confidence 46788889999999999999986442 78888887776556679999999888887766654
No 146
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.97 E-value=84 Score=24.59 Aligned_cols=61 Identities=18% Similarity=0.022 Sum_probs=48.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
+-|+--.+..++-.|+++.+|+.-|- +|.+|+...-+.+.-=|+|++.....|......+|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~V-kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDV-KVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhhc
Confidence 45677788899999999999986442 78888888777666679999999998888766654
No 147
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.61 E-value=15 Score=35.58 Aligned_cols=67 Identities=7% Similarity=0.179 Sum_probs=52.9
Q ss_pred EEEeCCCCCCcHHHHH---HHHhcCcCCceEEEEEEecCCC-----C-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 5 ITLSGFASPVSPKALK---DFLEEHTGEGTVSDVEVGQNKG-----L-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk---~~Fe~~~g~G~V~~v~I~~dr~-----g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||-|++.....+++. ++|.+| |.|..+.+-.+.. + -..++|+|+..|+|..||+.-+|..+.++.+
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqy---gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQY---GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhCCCccccchhhhhCccccccc---ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 6777888777666554 577787 9999998888762 2 5569999999999999999988877777764
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.31 E-value=79 Score=32.21 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=56.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNS 67 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~ 67 (271)
..|.|-.+|..++..||-.|...+. -.|.+++|+.|..+ |=-..+.|.+.++|..--...||+
T Consensus 75 ~mLcilaVP~~mt~~Dll~F~~~~~--~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 75 TMLCILAVPAYMTSHDLLRFCASFI--KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred cEEEEEeccccccHHHHHHHHHHHh--hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCC
Confidence 4688889999999999999999886 78999999997765 888999999999999999888774
No 149
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=36.50 E-value=65 Score=26.05 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=33.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCH
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTV 54 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~ 54 (271)
-|||||++..+ .+.|-+..++.++.|.+.-+- .++.+ -||+|-+..++
T Consensus 29 GVyVg~~S~rV-Rd~lW~~v~~~~~~G~avmv~-~~~~e-qG~~~~t~G~~ 76 (97)
T PRK11558 29 GVYVGDVSRRI-REMIWQQVTQLAEEGNVVMAW-ATNTE-SGFEFQTFGEN 76 (97)
T ss_pred CcEEcCCCHHH-HHHHHHHHHHhCCCCcEEEEE-cCCCC-CCcEEEecCCC
Confidence 48999987775 566777788877778776555 22222 59999887664
No 150
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.47 E-value=1.1e+02 Score=26.85 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEec------------CCCCCC-eEEEEeCCHHH
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQ------------NKGLKA-HAVVEFTTVEA 56 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~------------dr~gRG-FaFVeF~~~e~ 56 (271)
+|++--++..+++++.++.-+..-+.+++.++++-. |++||+ |-.|.|++-+.
T Consensus 89 KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 89 KIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred eEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999999999875568888888776 334477 99999998553
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.50 E-value=86 Score=31.69 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=50.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
-|-|+|||..-..+||...|+.|-+.| ++++-+. +.||+--|.+...|..|+.. +..-|+.|++
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kg--fdIkWvD----dthalaVFss~~~AaeaLt~-kh~~lKiRpL 456 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKG--FDIKWVD----DTHALAVFSSVNRAAEALTL-KHDWLKIRPL 456 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCC--ceeEEee----cceeEEeecchHHHHHHhhc-cCceEEeeeh
Confidence 478999999999999999999994322 3333332 46899999999999888877 6677788877
No 152
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=35.31 E-value=1.5e+02 Score=23.61 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=37.0
Q ss_pred EEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 6 TLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 6 ~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
+|+ ||..-...||.++|..+ |.|.--= +. -.=|||...+.+.|..|++.++
T Consensus 13 hlt-FPkeWK~~DI~qlFspf---G~I~VsW-i~----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 13 HLT-FPKEWKTSDIYQLFSPF---GQIYVSW-IN----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEE---TT--HHHHHHHCCCC---CCEEEEE-EC----TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEe-CchHhhhhhHHHHhccC---CcEEEEE-Ec----CCcEEEEeecHHHHHHHHHHhc
Confidence 455 99999999999999998 7764322 22 3679999999999999998873
No 153
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.93 E-value=19 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHh
Q 024210 3 KMITLSGFASPVSPKALKDFLE 24 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe 24 (271)
+||-|+|||...++++|+|.+|
T Consensus 53 rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 53 RTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999999999877
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=31.48 E-value=59 Score=27.15 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHH
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMS 62 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~ 62 (271)
.+++++|++..++..++.+.|... |.+....+.....+ ..+.++.+.....+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 226 DNLYVGNLPLKTAEEELADLFKSR---GDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ceeeccccccccchhHHHHhcccc---ccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 468999999999999999999998 89988888877765 3444455544444444433
No 155
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=31.20 E-value=51 Score=27.22 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=29.3
Q ss_pred cCCeeEEeecCCcceeeeec--CceEEEEE---eee--------cceeeeeeeehhh
Q 024210 96 SKDKFSVFWSPENVSVKLCS--DLRKFEFF---LSY--------ESVDSRFELSDES 139 (271)
Q Consensus 96 s~~~f~v~w~~~~v~v~f~~--~~rk~~F~---~s~--------~~~~yKLE~~~e~ 139 (271)
|..++.++|+|++-+-.--. ...|+.|. |+- ++..|.||+-.++
T Consensus 38 s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~s 94 (108)
T PF11465_consen 38 SQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNES 94 (108)
T ss_dssp SSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETT
T ss_pred cCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCC
Confidence 77899999999765544333 26788887 221 8899999987643
No 156
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.85 E-value=29 Score=33.46 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=43.0
Q ss_pred ceEEEeCCCCC------------CcHHHHHHHHhcCcCCceEEEEEEecCCC----------C---CCeEE---------
Q 024210 3 KMITLSGFASP------------VSPKALKDFLEEHTGEGTVSDVEVGQNKG----------L---KAHAV--------- 48 (271)
Q Consensus 3 ~tI~Vgnlp~~------------vta~dLk~~Fe~~~g~G~V~~v~I~~dr~----------g---RGFaF--------- 48 (271)
.|||+.++|-. -+++-|...||.+ |.|..|.|+.-.. | .||||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf---g~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF---GEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHh---ccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 37899998843 4678899999999 9999999986221 2 67764
Q ss_pred EEeCCHHHHHHHHHHc
Q 024210 49 VEFTTVEAADLIMSLA 64 (271)
Q Consensus 49 VeF~~~e~A~~Ai~~~ 64 (271)
|||-.-..-..|++++
T Consensus 227 vqfmeykgfa~amdal 242 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDAL 242 (445)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 6666666666777765
No 157
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=27.80 E-value=31 Score=37.63 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=49.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+.++-|.+-+.+..-|..++.+| |.|.+++...|- ..|-|+|.+.|.|..|.+++.|.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y---g~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY---GSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh---cchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 34566777788999999999999 999988876444 5799999999999999999855444
No 158
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=24.75 E-value=20 Score=33.45 Aligned_cols=18 Identities=44% Similarity=0.720 Sum_probs=17.3
Q ss_pred EEeeCccCCCCccccccc
Q 024210 253 VKRHGGAHHARSNSLLTS 270 (271)
Q Consensus 253 lv~~g~~~~~~~~~~~~~ 270 (271)
|+|-|.-|||||++||||
T Consensus 226 l~r~g~QhQagsdaLlTa 243 (299)
T COG5228 226 LQRSGQQHQAGSDALLTA 243 (299)
T ss_pred hhccchhhhccchhhhhh
Confidence 899999999999999997
No 159
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=24.65 E-value=1.4e+02 Score=26.09 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=41.9
Q ss_pred eeeeeehhhhhheecccCCCCCceEEE-EEecCCC--ceeecCCceeeeeccCCCCc----cccceeEEEEecCCCCc
Q 024210 131 SRFELSDESISQIELHIPSGHSVKYLV-IQLHGPP--MIYKNDIHWVREVDFTPSSS----VGKSSAICLELPTRAHI 201 (271)
Q Consensus 131 yKLE~~~e~I~ei~~~~~~g~~~~~LL-lql~~aP--~Iy~r~d~WiRttDFTps~s----IG~ss~~clei~~~~~~ 201 (271)
+.+.--|.||.||+..... ....++ -+....= .-|...|-+.|+|.++++.+ =+..-++.|+|+|+..+
T Consensus 113 l~~~aDFaDiFEVRg~~~~--~rg~~~~~~~~~~~l~~~Y~g~D~~~r~t~i~~~~~p~~~~~~~~~~~l~L~P~~~~ 188 (194)
T PF14742_consen 113 LEFDADFADIFEVRGGRRA--RRGEVLPPEVEDDGLRFSYRGLDGIRRETRISFSPSPARVEGGRARWRLDLPPGESW 188 (194)
T ss_pred EEEECCchhhHhhcCCCCC--CCCcccceEEcCCEEEEEEEcCCCCEEEEEEEecCCCCceECCEEEEEEEECCCCEE
Confidence 3344458999999988762 122222 2333332 22333399999998887443 24457888999988543
No 160
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=22.07 E-value=1.6e+02 Score=19.29 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=24.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSD 34 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~ 34 (271)
+.++++.|.....+.++|++..+... |+|..
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~G--g~v~~ 31 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLG--GKVTS 31 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcC--CEEec
Confidence 35788999887889999999999984 55543
No 161
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=21.85 E-value=1.6e+02 Score=20.44 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=30.3
Q ss_pred EeecCCcceeeeecCceEEEEEeeecceee-eeeeehhhhhheec
Q 024210 102 VFWSPENVSVKLCSDLRKFEFFLSYESVDS-RFELSDESISQIEL 145 (271)
Q Consensus 102 v~w~~~~v~v~f~~~~rk~~F~~s~~~~~y-KLE~~~e~I~ei~~ 145 (271)
.+|+.-.+......-..+++|.=...+... |+.+.++||.+|+-
T Consensus 15 ~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 15 YLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred EECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 344444555566666888888854444444 99999999998863
No 162
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.88 E-value=3.6e+02 Score=28.55 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=52.1
Q ss_pred ceEEEeCCCCC-CcHHHHHHHHhcCcC-CceEEEEEEecCCCC-------------------------------------
Q 024210 3 KMITLSGFASP-VSPKALKDFLEEHTG-EGTVSDVEVGQNKGL------------------------------------- 43 (271)
Q Consensus 3 ~tI~Vgnlp~~-vta~dLk~~Fe~~~g-~G~V~~v~I~~dr~g------------------------------------- 43 (271)
+.|=|=|++|+ +.++||--.|.+++- .|.|.+|.|....-|
T Consensus 175 ~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~~ 254 (650)
T KOG2318|consen 175 KRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDVD 254 (650)
T ss_pred ceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhHH
Confidence 56789999996 789999999999984 369999999872211
Q ss_pred -----------C--CeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 44 -----------K--AHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 44 -----------R--GFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+ =||.|+|.+.+.|...-..-+|-++
T Consensus 255 ~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 255 REKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred HHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee
Confidence 1 2799999999999877777666544
No 163
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=20.79 E-value=1.9e+02 Score=25.72 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=34.8
Q ss_pred cHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC--CCeeEEe
Q 024210 15 SPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG--NSYLKAS 72 (271)
Q Consensus 15 ta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g--~~~L~~r 72 (271)
.-+.|+++|..+ +.+........= +=..|-|.+.++|+.|...+. +..+.+.
T Consensus 8 ~~~~l~~l~~~~---~~~~~~~~L~sF---rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 8 NLAELEELFSTY---DPPVQFSPLKSF---RRIRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp -HHHHHHHHHTT----SS-EEEEETTT---TEEEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred hHHHHHHHHHhc---CCceEEEEcCCC---CEEEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 457899999998 777666555222 336789999999999999876 5444444
No 164
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=20.76 E-value=1.2e+02 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCCCCCeEEEEeCCHH
Q 024210 30 GTVSDVEVGQNKGLKAHAVVEFTTVE 55 (271)
Q Consensus 30 G~V~~v~I~~dr~gRGFaFVeF~~~e 55 (271)
|.|.+++....+.|+.+++++++|..
T Consensus 4 g~v~~~~~~~~k~g~~~~~~~l~D~t 29 (84)
T cd04485 4 GLVTSVRRRRTKKGKRMAFVTLEDLT 29 (84)
T ss_pred EEEEEeEEEEcCCCCEEEEEEEEeCC
Confidence 88888888777766669999998854
Done!