Query 024210
Match_columns 271
No_of_seqs 177 out of 643
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 1.4E-17 4.7E-22 129.3 8.6 70 2-74 19-91 (99)
2 4f25_A Polyadenylate-binding p 99.7 1.6E-17 5.3E-22 131.5 7.8 69 3-74 6-75 (115)
3 2lxi_A RNA-binding protein 10; 99.7 2.5E-17 8.5E-22 125.7 6.4 73 2-77 1-83 (91)
4 1s79_A Lupus LA protein; RRM, 99.7 4.6E-17 1.6E-21 127.7 7.3 69 2-74 11-81 (103)
5 2dgx_A KIAA0430 protein; RRM d 99.7 2.4E-16 8.2E-21 120.5 10.0 70 2-74 9-82 (96)
6 3s8s_A Histone-lysine N-methyl 99.7 1.2E-16 4E-21 126.6 8.5 70 2-74 6-78 (110)
7 1x4e_A RNA binding motif, sing 99.7 1.1E-16 3.8E-21 118.7 6.7 72 2-76 5-79 (85)
8 3md1_A Nuclear and cytoplasmic 99.7 3.2E-16 1.1E-20 115.3 8.8 70 2-74 1-73 (83)
9 4a8x_A RNA-binding protein wit 99.6 3.8E-16 1.3E-20 115.8 8.7 69 3-74 5-77 (88)
10 3p5t_L Cleavage and polyadenyl 99.6 1.1E-16 3.7E-21 120.9 5.7 69 3-74 2-75 (90)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.3E-16 1.5E-20 115.1 8.8 69 3-74 8-79 (85)
12 1whw_A Hypothetical protein ri 99.6 1E-15 3.6E-20 116.5 11.0 72 3-77 9-88 (99)
13 3bs9_A Nucleolysin TIA-1 isofo 99.6 4E-16 1.4E-20 115.7 8.4 69 3-74 7-78 (87)
14 2cq3_A RNA-binding protein 9; 99.6 7.6E-16 2.6E-20 118.3 10.1 70 2-74 15-85 (103)
15 3ns6_A Eukaryotic translation 99.6 1.6E-16 5.4E-21 122.8 6.3 70 2-74 6-85 (100)
16 2ywk_A Putative RNA-binding pr 99.6 3.8E-16 1.3E-20 117.8 8.2 69 3-74 17-87 (95)
17 2krb_A Eukaryotic translation 99.6 2.9E-16 9.8E-21 116.2 7.1 69 2-74 1-78 (81)
18 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.4E-16 1.8E-20 119.1 8.7 70 2-74 15-85 (103)
19 2x1f_A MRNA 3'-END-processing 99.6 6.7E-16 2.3E-20 117.4 9.2 70 2-74 2-74 (96)
20 2dnz_A Probable RNA-binding pr 99.6 1.5E-15 5E-20 114.6 10.8 73 2-77 5-85 (95)
21 2do4_A Squamous cell carcinoma 99.6 1.1E-15 3.7E-20 116.8 10.1 72 3-77 18-96 (100)
22 1p27_B RNA-binding protein 8A; 99.6 9.8E-16 3.4E-20 118.0 9.6 72 3-77 24-103 (106)
23 2div_A TRNA selenocysteine ass 99.6 3.4E-16 1.1E-20 119.2 6.8 70 1-73 8-81 (99)
24 2lkz_A RNA-binding protein 5; 99.6 1.1E-16 3.9E-21 124.3 4.2 62 3-67 10-76 (95)
25 2dgs_A DAZ-associated protein 99.6 1.7E-15 5.9E-20 115.5 10.6 72 2-77 10-89 (99)
26 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 113.8 9.2 68 3-74 7-77 (89)
27 3s7r_A Heterogeneous nuclear r 99.6 9.9E-16 3.4E-20 114.0 8.8 69 2-74 11-82 (87)
28 1x5u_A Splicing factor 3B subu 99.6 2.5E-15 8.5E-20 115.5 11.3 72 3-77 16-95 (105)
29 2e5h_A Zinc finger CCHC-type a 99.6 8.9E-16 3E-20 115.6 8.2 69 3-74 17-88 (94)
30 2cqc_A Arginine/serine-rich sp 99.6 8E-16 2.7E-20 115.8 7.9 69 3-74 16-87 (95)
31 2do0_A HnRNP M, heterogeneous 99.6 1E-15 3.4E-20 119.4 8.5 70 2-74 15-86 (114)
32 2dhg_A TRNA selenocysteine ass 99.6 7.4E-16 2.5E-20 118.3 7.6 70 2-74 9-82 (104)
33 1sjq_A Polypyrimidine tract-bi 99.6 9.4E-16 3.2E-20 122.3 8.4 67 2-74 16-84 (105)
34 2cpf_A RNA binding motif prote 99.6 1.1E-15 3.9E-20 116.1 8.4 69 3-74 6-80 (98)
35 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.7E-20 118.2 10.3 72 3-77 26-104 (109)
36 1x4h_A RNA-binding protein 28; 99.6 1.8E-15 6E-20 117.2 9.6 74 2-78 15-102 (111)
37 1x5t_A Splicing factor 3B subu 99.6 5.8E-16 2E-20 117.1 6.6 70 2-74 5-78 (96)
38 2dnm_A SRP46 splicing factor; 99.6 1.8E-15 6.1E-20 116.2 9.4 69 3-74 14-85 (103)
39 1x4a_A Splicing factor, argini 99.6 2.2E-15 7.6E-20 117.0 10.0 69 3-74 23-91 (109)
40 2dnh_A Bruno-like 5, RNA bindi 99.6 2.4E-15 8.3E-20 115.6 9.9 73 2-77 15-97 (105)
41 2cqg_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.4E-20 115.7 9.5 73 3-78 16-94 (103)
42 2dgv_A HnRNP M, heterogeneous 99.6 1.5E-15 5.1E-20 113.9 8.4 70 2-74 8-78 (92)
43 3md3_A Nuclear and cytoplasmic 99.6 1.7E-15 5.8E-20 122.1 9.3 90 3-96 1-97 (166)
44 2la6_A RNA-binding protein FUS 99.6 7.6E-16 2.6E-20 117.7 6.8 69 3-74 14-93 (99)
45 2cq0_A Eukaryotic translation 99.6 1.1E-15 3.7E-20 117.4 7.6 70 2-74 15-87 (103)
46 3ulh_A THO complex subunit 4; 99.6 1.5E-15 5.2E-20 117.1 8.4 70 2-74 29-100 (107)
47 3lqv_A PRE-mRNA branch site pr 99.6 1.9E-15 6.5E-20 118.2 9.0 71 1-74 7-77 (115)
48 2dgo_A Cytotoxic granule-assoc 99.6 2.1E-15 7.3E-20 117.9 9.3 69 3-74 16-87 (115)
49 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.6E-20 117.3 9.0 69 3-74 27-98 (110)
50 1wg5_A Heterogeneous nuclear r 99.6 1.1E-15 3.6E-20 118.7 7.4 72 3-77 16-94 (104)
51 2cph_A RNA binding motif prote 99.6 2.2E-15 7.4E-20 116.0 9.1 69 3-74 16-89 (107)
52 2khc_A Testis-specific RNP-typ 99.6 1.6E-15 5.4E-20 119.2 8.4 69 3-74 41-112 (118)
53 2mss_A Protein (musashi1); RNA 99.6 5.2E-16 1.8E-20 112.5 5.2 67 4-74 1-70 (75)
54 2d9p_A Polyadenylate-binding p 99.6 2.2E-15 7.6E-20 115.6 9.0 72 2-77 15-93 (103)
55 1x5s_A Cold-inducible RNA-bind 99.6 2.2E-15 7.5E-20 115.3 8.8 72 3-77 13-92 (102)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.5E-15 5.3E-20 116.1 7.9 69 3-74 13-84 (102)
57 2fy1_A RNA-binding motif prote 99.6 1.5E-15 5E-20 120.6 7.7 69 3-74 8-78 (116)
58 2cpz_A CUG triplet repeat RNA- 99.6 1.4E-15 4.8E-20 119.2 7.4 69 3-74 26-97 (115)
59 2nlw_A Eukaryotic translation 99.6 1.1E-15 3.9E-20 118.7 6.8 68 1-72 14-89 (105)
60 3n9u_C Cleavage and polyadenyl 99.6 1.9E-15 6.5E-20 126.8 8.6 69 3-74 56-129 (156)
61 2err_A Ataxin-2-binding protei 99.6 1E-15 3.5E-20 119.9 6.5 70 2-74 29-99 (109)
62 1uaw_A Mouse-musashi-1; RNP-ty 99.6 6.2E-16 2.1E-20 112.2 4.7 68 3-74 1-71 (77)
63 1wez_A HnRNP H', FTP-3, hetero 99.6 1.2E-15 4.1E-20 118.9 6.4 66 2-72 15-82 (102)
64 2cq4_A RNA binding motif prote 99.6 2.2E-15 7.5E-20 117.9 7.9 68 3-74 26-96 (114)
65 2cpe_A RNA-binding protein EWS 99.6 2.3E-15 7.8E-20 117.4 7.9 69 3-74 16-95 (113)
66 1wi8_A EIF-4B, eukaryotic tran 99.6 5.5E-15 1.9E-19 113.8 9.9 70 3-77 16-94 (104)
67 1x4c_A Splicing factor, argini 99.6 7E-15 2.4E-19 114.6 10.5 63 2-71 15-77 (108)
68 2xs2_A Deleted in azoospermia- 99.6 9.1E-16 3.1E-20 117.6 5.3 70 2-74 9-83 (102)
69 2dh8_A DAZ-associated protein 99.6 1.9E-15 6.3E-20 116.5 7.0 68 3-74 17-87 (105)
70 2wbr_A GW182, gawky, LD47780P; 99.6 2.7E-15 9.1E-20 117.1 7.8 70 1-76 6-75 (89)
71 2cpi_A CCR4-NOT transcription 99.6 1.1E-15 3.8E-20 119.9 5.8 70 2-74 15-93 (111)
72 2jrs_A RNA-binding protein 39; 99.6 4.5E-15 1.5E-19 116.5 9.2 69 3-74 27-98 (108)
73 2cpy_A RNA-binding protein 12; 99.6 8E-16 2.7E-20 121.2 4.9 69 2-74 15-86 (114)
74 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.5E-15 5.2E-20 116.8 6.3 68 2-74 19-90 (100)
75 2ek1_A RNA-binding protein 12; 99.6 7.1E-16 2.4E-20 116.4 4.3 69 3-74 16-87 (95)
76 2cqd_A RNA-binding region cont 99.6 6E-15 2.1E-19 115.7 9.8 69 3-74 18-93 (116)
77 2lmi_A GRSF-1, G-rich sequence 99.6 6.6E-16 2.2E-20 120.5 4.2 69 2-74 11-84 (107)
78 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-15 6.9E-20 116.2 6.6 63 3-68 14-79 (106)
79 4f02_A Polyadenylate-binding p 99.6 3.9E-15 1.3E-19 128.2 9.2 90 3-96 16-113 (213)
80 1fxl_A Paraneoplastic encephal 99.6 9.8E-15 3.4E-19 117.8 11.0 89 2-96 2-98 (167)
81 1iqt_A AUF1, heterogeneous nuc 99.6 7E-16 2.4E-20 111.6 3.8 67 4-74 1-70 (75)
82 3ex7_B RNA-binding protein 8A; 99.6 3.8E-15 1.3E-19 118.2 8.3 68 3-73 23-93 (126)
83 2cq1_A PTB-like protein L; RRM 99.6 6.1E-15 2.1E-19 115.8 9.4 70 2-77 15-91 (101)
84 2db1_A Heterogeneous nuclear r 99.6 8.3E-16 2.9E-20 122.4 4.5 67 3-73 18-89 (118)
85 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.4E-20 116.2 5.8 69 3-74 9-80 (104)
86 2jvr_A Nucleolar protein 3; RN 99.6 1.8E-15 6.3E-20 120.9 6.4 68 3-74 29-97 (111)
87 2kxn_B Transformer-2 protein h 99.6 2.8E-15 9.7E-20 121.5 7.6 69 3-74 47-118 (129)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.6E-15 1.6E-19 118.8 8.5 69 3-74 64-135 (140)
89 2kt5_A RNA and export factor-b 99.6 3.2E-15 1.1E-19 118.8 7.4 70 3-75 36-112 (124)
90 1x5o_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 116.4 7.6 71 3-76 26-98 (114)
91 2dnn_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 118.8 7.2 66 3-73 17-84 (109)
92 2ad9_A Polypyrimidine tract-bi 99.6 5.7E-15 1.9E-19 120.0 8.7 70 2-77 31-107 (119)
93 1u6f_A Tcubp1, RNA-binding pro 99.6 8.9E-15 3E-19 117.9 9.7 71 3-76 43-121 (139)
94 1b7f_A Protein (SXL-lethal pro 99.6 1.6E-14 5.5E-19 117.2 11.2 89 2-96 3-99 (168)
95 3d2w_A TAR DNA-binding protein 99.6 7.1E-15 2.4E-19 111.7 8.4 72 2-78 11-85 (89)
96 1x4b_A Heterogeneous nuclear r 99.6 7.1E-15 2.4E-19 115.3 8.6 72 3-77 28-106 (116)
97 2dng_A Eukaryotic translation 99.6 4.9E-15 1.7E-19 113.9 7.5 67 3-74 16-85 (103)
98 1why_A Hypothetical protein ri 99.6 1.8E-14 6E-19 109.7 10.4 63 2-70 17-79 (97)
99 2kn4_A Immunoglobulin G-bindin 99.6 1.2E-14 4.3E-19 119.2 10.2 72 3-77 71-150 (158)
100 2hgl_A HNRPF protein, heteroge 99.6 9.9E-16 3.4E-20 126.5 3.6 68 3-74 45-122 (136)
101 2ki2_A SS-DNA binding protein 99.6 8.8E-16 3E-20 115.0 2.9 68 3-74 2-72 (90)
102 1x4d_A Matrin 3; structural ge 99.6 8.7E-15 3E-19 115.6 8.7 69 2-76 15-91 (102)
103 1wex_A Hypothetical protein (r 99.6 1.9E-14 6.5E-19 113.4 10.3 70 2-77 15-91 (104)
104 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.6E-20 115.2 4.0 69 3-74 16-87 (98)
105 2dis_A Unnamed protein product 99.6 6.7E-15 2.3E-19 113.8 7.5 72 3-77 9-92 (109)
106 2dgw_A Probable RNA-binding pr 99.6 1.3E-14 4.5E-19 109.0 8.8 68 2-74 10-79 (91)
107 2e5j_A Methenyltetrahydrofolat 99.6 1E-14 3.5E-19 111.2 8.2 71 2-77 19-94 (97)
108 2la4_A Nuclear and cytoplasmic 99.6 1E-14 3.4E-19 111.6 8.1 67 2-74 27-93 (101)
109 2jwn_A Embryonic polyadenylate 99.5 7.9E-15 2.7E-19 116.1 7.8 68 3-74 37-107 (124)
110 2dnq_A RNA-binding protein 4B; 99.5 2.7E-14 9.3E-19 107.2 10.2 67 3-77 9-80 (90)
111 1x4g_A Nucleolysin TIAR; struc 99.5 1.8E-14 6.1E-19 112.0 9.4 67 2-74 25-91 (109)
112 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.3E-14 4.3E-19 119.6 8.7 70 2-74 39-111 (156)
113 2dnl_A Cytoplasmic polyadenyla 99.5 1E-14 3.4E-19 114.9 7.6 67 2-72 8-83 (114)
114 2hgm_A HNRPF protein, heteroge 99.5 9.5E-15 3.3E-19 119.5 7.6 68 3-74 43-113 (126)
115 2fc9_A NCL protein; structure 99.5 2.8E-14 9.6E-19 109.1 9.7 70 2-77 15-91 (101)
116 2cq2_A Hypothetical protein LO 99.5 1.3E-14 4.6E-19 117.3 8.2 61 3-69 26-88 (114)
117 2m2b_A RNA-binding protein 10; 99.5 3E-15 1E-19 120.6 4.3 68 3-74 24-100 (131)
118 2xnq_A Nuclear polyadenylated 99.5 2.2E-14 7.5E-19 110.3 9.0 66 1-74 21-87 (97)
119 1l3k_A Heterogeneous nuclear r 99.5 2.3E-14 7.8E-19 119.3 9.7 89 3-95 14-113 (196)
120 2hzc_A Splicing factor U2AF 65 99.5 1.5E-14 5.1E-19 107.2 7.7 69 2-74 6-82 (87)
121 3r27_A HnRNP L, heterogeneous 99.5 4E-14 1.4E-18 112.1 10.5 60 2-67 21-80 (100)
122 2hgn_A Heterogeneous nuclear r 99.5 2.3E-15 7.7E-20 124.9 3.4 68 2-74 46-115 (139)
123 2ytc_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.7E-19 106.0 8.5 66 3-74 13-79 (85)
124 2dha_A FLJ20171 protein; RRM d 99.5 2.9E-15 1E-19 121.7 4.0 66 3-72 24-95 (123)
125 2cjk_A Nuclear polyadenylated 99.5 1.3E-14 4.6E-19 117.8 7.8 89 2-96 3-97 (167)
126 2hvz_A Splicing factor, argini 99.5 2.4E-14 8.2E-19 109.5 8.6 69 3-76 1-74 (101)
127 1nu4_A U1A RNA binding domain; 99.5 9E-15 3.1E-19 110.7 6.1 70 2-74 8-81 (97)
128 2lea_A Serine/arginine-rich sp 99.5 6.2E-15 2.1E-19 120.3 5.5 72 3-77 48-127 (135)
129 2a3j_A U1 small nuclear ribonu 99.5 1.5E-14 5.2E-19 118.0 7.7 70 2-74 29-102 (127)
130 2jvo_A Nucleolar protein 3; nu 99.5 1.9E-14 6.4E-19 113.0 7.9 64 3-74 32-95 (108)
131 2cpd_A Apobec-1 stimulating pr 99.5 7.1E-14 2.4E-18 106.7 10.7 66 3-74 16-81 (99)
132 2dnp_A RNA-binding protein 14; 99.5 2.4E-14 8.3E-19 107.5 8.0 65 2-74 9-73 (90)
133 3beg_B Splicing factor, argini 99.5 1.5E-14 5.1E-19 114.4 6.8 64 3-73 17-80 (115)
134 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.5E-19 108.6 6.1 72 2-78 5-79 (88)
135 2dgt_A RNA-binding protein 30; 99.5 5.3E-14 1.8E-18 106.1 9.4 68 2-77 10-82 (92)
136 2j8a_A Histone-lysine N-methyl 99.5 7E-15 2.4E-19 122.6 4.5 72 1-75 1-89 (136)
137 2cpj_A Non-POU domain-containi 99.5 3.3E-14 1.1E-18 108.5 8.0 69 3-77 16-89 (99)
138 1whx_A Hypothetical protein ri 99.5 2.7E-14 9.1E-19 112.5 7.6 66 3-74 11-76 (111)
139 2dgu_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 109.6 7.6 64 3-74 12-75 (103)
140 1wf1_A RNA-binding protein RAL 99.5 2E-14 6.9E-19 111.9 6.5 66 1-74 26-92 (110)
141 3q2s_C Cleavage and polyadenyl 99.5 1.5E-14 5.2E-19 128.0 6.5 69 3-74 69-142 (229)
142 1rk8_A CG8781-PA, CG8781-PA pr 99.5 3.8E-14 1.3E-18 118.3 8.4 69 3-74 73-144 (165)
143 1fj7_A Nucleolin RBD1, protein 99.5 8.2E-15 2.8E-19 112.1 4.0 71 2-77 17-95 (101)
144 2kvi_A Nuclear polyadenylated 99.5 2.7E-14 9.3E-19 108.8 6.9 63 3-73 11-74 (96)
145 2e5g_A U6 snRNA-specific termi 99.5 5E-14 1.7E-18 106.8 8.3 65 3-74 9-74 (94)
146 3tyt_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 122.6 8.9 68 2-74 4-72 (205)
147 4f02_A Polyadenylate-binding p 99.5 3E-14 1E-18 122.6 7.7 69 3-74 104-173 (213)
148 1wel_A RNA-binding protein 12; 99.5 4.3E-15 1.5E-19 118.4 1.7 68 3-74 26-101 (124)
149 2i2y_A Fusion protein consists 99.5 7.9E-14 2.7E-18 114.1 9.2 67 3-74 74-140 (150)
150 3nmr_A Cugbp ELAV-like family 99.5 6.1E-14 2.1E-18 114.2 8.4 90 2-96 3-105 (175)
151 1x4f_A Matrin 3; structural ge 99.5 4.2E-14 1.4E-18 113.8 7.1 70 2-77 25-102 (112)
152 1fjc_A Nucleolin RBD2, protein 99.5 5.7E-14 1.9E-18 106.2 7.3 65 3-74 17-83 (96)
153 2fc8_A NCL protein; structure 99.5 5.6E-14 1.9E-18 107.4 7.2 66 3-74 16-84 (102)
154 2f3j_A RNA and export factor b 99.5 4.9E-14 1.7E-18 120.2 7.4 69 3-74 89-159 (177)
155 2lcw_A RNA-binding protein FUS 99.2 3.7E-15 1.2E-19 117.2 0.0 69 3-74 8-87 (116)
156 2qfj_A FBP-interacting repress 99.5 1E-13 3.6E-18 116.9 8.7 69 3-74 29-100 (216)
157 2g4b_A Splicing factor U2AF 65 99.5 8.4E-14 2.9E-18 113.6 7.8 69 3-74 95-166 (172)
158 2e44_A Insulin-like growth fac 99.5 1.3E-13 4.6E-18 104.2 8.3 68 3-74 16-84 (96)
159 3md3_A Nuclear and cytoplasmic 99.5 1.1E-13 3.8E-18 111.5 8.2 69 3-74 88-159 (166)
160 2voo_A Lupus LA protein; RNA-b 99.5 8.7E-14 3E-18 120.0 8.0 68 3-74 110-179 (193)
161 2cpx_A Hypothetical protein FL 99.5 6.1E-14 2.1E-18 109.4 6.2 68 3-74 26-97 (115)
162 2cjk_A Nuclear polyadenylated 99.5 9.8E-14 3.3E-18 112.7 7.4 72 3-77 88-166 (167)
163 1l3k_A Heterogeneous nuclear r 99.5 1.6E-13 5.6E-18 114.1 8.8 72 3-77 105-183 (196)
164 3zzy_A Polypyrimidine tract-bi 99.5 2.8E-13 9.6E-18 111.9 10.0 63 4-71 30-93 (130)
165 1sjr_A Polypyrimidine tract-bi 99.4 3.1E-13 1E-17 115.8 10.4 76 4-83 48-130 (164)
166 3nmr_A Cugbp ELAV-like family 99.4 1.4E-13 4.9E-18 111.9 7.7 64 3-69 96-161 (175)
167 2qfj_A FBP-interacting repress 99.4 3.8E-13 1.3E-17 113.5 10.1 72 3-77 126-205 (216)
168 2cqh_A IGF-II mRNA-binding pro 99.4 6.4E-14 2.2E-18 105.6 4.8 65 3-74 9-75 (93)
169 1wg1_A KIAA1579 protein, homol 99.4 9.3E-14 3.2E-18 104.3 5.1 66 2-74 5-70 (88)
170 2yh0_A Splicing factor U2AF 65 99.4 2.9E-13 1E-17 112.7 8.4 69 3-74 115-186 (198)
171 1x5p_A Negative elongation fac 99.4 8.3E-13 2.9E-17 100.5 9.6 65 2-74 15-79 (97)
172 2e5i_A Heterogeneous nuclear r 99.4 7.8E-13 2.7E-17 108.0 9.4 74 4-83 27-108 (124)
173 2ghp_A U4/U6 snRNA-associated 99.4 5.2E-13 1.8E-17 118.8 9.0 86 3-97 42-128 (292)
174 1fxl_A Paraneoplastic encephal 99.4 4.8E-13 1.6E-17 107.8 7.6 68 3-73 89-159 (167)
175 3tyt_A Heterogeneous nuclear r 99.4 2.2E-13 7.4E-18 118.3 5.8 69 3-74 124-195 (205)
176 1qm9_A Polypyrimidine tract-bi 99.4 2.3E-13 7.9E-18 114.3 5.8 69 1-74 1-71 (198)
177 1b7f_A Protein (SXL-lethal pro 99.4 5.1E-13 1.7E-17 108.3 7.5 66 3-71 90-158 (168)
178 3egn_A RNA-binding protein 40; 99.4 1.8E-13 6E-18 111.2 4.7 69 3-74 46-122 (143)
179 1fje_B Nucleolin RBD12, protei 99.4 2E-13 6.9E-18 112.1 4.6 90 2-96 13-109 (175)
180 2g4b_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 106.0 9.8 90 2-96 4-104 (172)
181 3pgw_S U1-70K; protein-RNA com 99.4 8.4E-13 2.9E-17 127.3 8.8 69 3-74 103-174 (437)
182 2adc_A Polypyrimidine tract-bi 99.4 8.1E-13 2.8E-17 114.9 7.8 67 3-74 35-102 (229)
183 3smz_A Protein raver-1, ribonu 99.4 2.1E-12 7.2E-17 114.4 10.4 91 3-97 96-195 (284)
184 2yh0_A Splicing factor U2AF 65 99.3 2.5E-12 8.5E-17 107.1 9.4 67 1-74 3-80 (198)
185 2pe8_A Splicing factor 45; RRM 99.3 2.2E-12 7.6E-17 101.7 8.5 70 2-74 8-86 (105)
186 3pgw_A U1-A; protein-RNA compl 99.3 1.9E-12 6.4E-17 114.6 8.8 69 3-74 10-82 (282)
187 2ghp_A U4/U6 snRNA-associated 99.3 2.1E-12 7.1E-17 114.9 9.0 91 3-97 118-221 (292)
188 1fje_B Nucleolin RBD12, protei 99.3 3.8E-12 1.3E-16 104.5 9.4 65 3-74 100-166 (175)
189 2bz2_A Negative elongation fac 99.3 1.8E-12 6.3E-17 104.0 6.9 65 2-74 39-103 (121)
190 3pgw_A U1-A; protein-RNA compl 99.3 4.7E-12 1.6E-16 112.1 8.8 67 3-74 208-275 (282)
191 3smz_A Protein raver-1, ribonu 99.3 2.3E-12 8E-17 114.1 6.5 69 3-74 185-256 (284)
192 3tht_A Alkylated DNA repair pr 99.3 3.8E-12 1.3E-16 120.1 8.3 61 3-69 19-81 (345)
193 2diu_A KIAA0430 protein; struc 99.3 3.8E-12 1.3E-16 100.5 6.9 62 3-74 9-76 (96)
194 1jmt_A Splicing factor U2AF 35 99.3 6.8E-13 2.3E-17 104.2 2.4 66 7-75 20-99 (104)
195 3sde_A Paraspeckle component 1 99.3 4.7E-12 1.6E-16 112.3 7.9 84 3-96 23-106 (261)
196 3sde_A Paraspeckle component 1 99.3 6.7E-12 2.3E-16 111.3 8.7 69 3-74 97-176 (261)
197 1qm9_A Polypyrimidine tract-bi 99.3 6.9E-12 2.3E-16 105.3 6.9 68 2-74 120-189 (198)
198 2dit_A HIV TAT specific factor 99.2 1.4E-11 4.9E-16 96.6 7.5 69 2-74 15-94 (112)
199 2adc_A Polypyrimidine tract-bi 99.2 2E-11 7E-16 106.0 8.9 67 3-74 152-220 (229)
200 3u1l_A PRE-mRNA-splicing facto 99.2 9.8E-12 3.4E-16 112.0 6.8 61 3-69 135-204 (240)
201 3v4m_A Splicing factor U2AF 65 99.2 4.8E-11 1.6E-15 93.9 7.4 70 2-74 5-89 (105)
202 3ue2_A Poly(U)-binding-splicin 99.1 1.5E-10 5.2E-15 93.3 6.8 71 2-75 20-102 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.1E-10 2.1E-14 87.4 9.0 61 12-77 27-90 (100)
204 3s6e_A RNA-binding protein 39; 98.9 1.8E-09 6E-14 86.6 5.4 68 3-74 8-85 (114)
205 1owx_A Lupus LA protein, SS-B, 98.6 1E-07 3.5E-12 77.8 8.8 57 2-64 18-76 (121)
206 3dxb_A Thioredoxin N-terminall 98.5 9.6E-08 3.3E-12 82.3 5.8 58 14-74 141-205 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.3 1.2E-06 4.2E-11 68.3 7.0 63 3-74 8-78 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.1 1.9E-06 6.4E-11 67.8 3.9 63 3-74 16-87 (95)
209 2dhx_A Poly (ADP-ribose) polym 97.9 7.6E-05 2.6E-09 59.5 9.9 71 2-77 8-84 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.5 0.00016 5.4E-09 58.6 6.1 70 2-74 21-92 (117)
211 2kn4_A Immunoglobulin G-bindin 96.3 0.0042 1.4E-07 50.1 4.8 31 34-64 2-33 (158)
212 1wwh_A Nucleoporin 35, nucleop 95.1 0.05 1.7E-06 44.1 6.7 58 4-69 26-83 (119)
213 2i2y_A Fusion protein consists 93.3 0.049 1.7E-06 43.6 3.0 28 44-71 13-41 (150)
214 3pq1_A Poly(A) RNA polymerase; 93.1 0.042 1.4E-06 53.7 2.8 56 3-64 54-109 (464)
215 1whv_A Poly(A)-specific ribonu 87.9 0.75 2.6E-05 36.2 5.0 62 5-74 18-80 (100)
216 3ctr_A Poly(A)-specific ribonu 87.6 0.87 3E-05 35.9 5.2 52 5-64 8-59 (101)
217 3p3d_A Nucleoporin 53; structu 84.0 0.83 2.8E-05 37.6 3.6 57 4-64 9-82 (132)
218 1wey_A Calcipressin 1; structu 84.0 1 3.6E-05 35.6 4.1 66 3-74 6-76 (104)
219 1uw4_A UPF3X; nonsense mediate 81.4 5.7 0.0002 30.3 7.3 63 4-69 3-70 (91)
220 3d45_A Poly(A)-specific ribonu 52.1 33 0.0011 33.3 7.4 53 4-65 442-494 (507)
221 3rfr_C PMOC; membrane, oxidore 49.1 2.2 7.4E-05 38.5 -1.4 10 174-183 137-146 (256)
222 1yew_C Particulate methane mon 46.2 2.6 8.8E-05 38.6 -1.4 10 174-183 164-173 (289)
223 4e8u_A Putative uncharacterize 42.2 25 0.00086 29.9 4.2 49 4-56 14-74 (172)
224 1uoc_A POP2; hydrolase, DEDD n 41.0 2 6.9E-05 39.4 -3.0 30 242-271 227-256 (289)
225 2d5r_A CCR4-NOT transcription 39.0 2.6 8.8E-05 37.9 -2.6 24 247-270 202-225 (252)
226 4gmj_B CCR4-NOT transcription 38.9 2.6 8.9E-05 38.5 -2.6 23 249-271 214-236 (285)
227 2lea_A Serine/arginine-rich sp 38.1 13 0.00046 29.0 1.8 50 46-96 6-57 (135)
228 2l08_A Regulator of nonsense t 33.6 59 0.002 25.1 4.7 64 3-69 10-78 (97)
229 2p51_A SPCC18.06C protein; DED 33.3 3.7 0.00013 38.5 -2.6 27 245-271 221-247 (333)
230 3j21_T 50S ribosomal protein L 22.9 1.9E+02 0.0066 21.5 5.9 61 4-65 24-84 (86)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=129.34 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=63.0
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|.+|||||||+++|+++|+++|+++ |+|.+|+|+.|+. + ||||||+|+++++|++|++.++|..+.++++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4689999999999999999999999 9999999999987 4 9999999999999999999887666655554
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=1.6e-17 Score=131.49 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|+++++|++||+.+++..+.++++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~---G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCCCCHHHHHHHHhcc---CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 479999999999999999999999 99999999999876 9999999999999999999986665555544
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=125.70 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=63.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCc-eEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHc------CCCeeEE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEG-TVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLA------GNSYLKA 71 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~------g~~~L~~ 71 (271)
+++|||+|||+++|++||+++|+++ | +|.+|+|+.|+.+ ||||||+|+++++|++|++.+ +|+.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~---G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH---GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH---TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 4799999999999999999999999 8 8999999999873 999999999999999999875 4455666
Q ss_pred eeccCC
Q 024210 72 SYVKRR 77 (271)
Q Consensus 72 r~~Rpr 77 (271)
.-++|+
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 655555
No 4
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=127.73 Aligned_cols=69 Identities=19% Similarity=0.387 Sum_probs=61.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+||||||||+++|+++|+++|+++ |+|.+|+|+.|+.+ ||||||+|+++++|+.|++ +++..++++++
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~---G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTS---SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhc---CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 4799999999999999999999999 99999999999887 9999999999999999999 65555544444
No 5
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=120.52 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=62.3
Q ss_pred cceEEEeCCCCCCcHHHHH----HHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALK----DFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|||||||+++++++|+ ++|+++ |+|.+|+|+.|+.+||||||+|+++++|++|++.++|..+.++++
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~---G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARH---GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcccc---CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3589999999999999999 999999 999999999998889999999999999999999886654444443
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=126.62 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=64.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |+|.+|+|+.|+. + ||||||+|++.++|++||+.++|..+.++.+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY---GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3689999999999999999999999 9999999999987 4 9999999999999999999998877766666
No 7
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=118.73 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=67.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR 76 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp 76 (271)
+++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|+++++|+.|++.++|..++++.+|.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY---GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT---SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 4689999999999999999999999 9999999999976 3 999999999999999999999999999998853
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.2e-16 Score=115.32 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=62.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.||||+|||+++++++|+++|+++ |.|.+|+++.++. + ||||||+|.++++|+.|++.++|..+.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3589999999999999999999999 9999999999866 4 9999999999999999999887666655554
No 9
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=115.81 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC----CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL----KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g----RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+++.++.+ +|||||+|.++++|+.|++.++|..+.++.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTY---GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 689999999999999999999999 99999999999862 9999999999999999999887666655554
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.1e-16 Score=120.91 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=59.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc--eEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG--TVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.||||||||+++++++|+++|+++ | .|.+|+|+.|+. | ||||||+|++.++|++|++.++|..+.|+.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~---G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT---TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh---CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 479999999999999999999999 9 999999999986 4 9999999999999999999886655555544
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.3e-16 Score=115.08 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=63.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+++.|+. + ||||||+|.++++|+.|++.+++..+.++++
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhcc---CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 689999999999999999999999 9999999999865 4 9999999999999999999988887777765
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=116.47 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.+.++|+.|++.+++ +.|+++.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAY---GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 689999999999999999999999 9999999999985 4 99999999999999999988855 55566655
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=115.72 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++++++|+++|+++ |.|.+|++..++. + ||||||+|.+.++|+.|++.+++..+.++.+
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 589999999999999999999999 9999999999975 4 9999999999999999999887666655554
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=118.28 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=62.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|..++.+ ||||||+|.+.++|+.|++.+++..++++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3689999999999999999999999 99999999999887 9999999999999999999886655544444
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=1.6e-16 Score=122.77 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=62.9
Q ss_pred cceEEEeCCCC------CCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEE-
Q 024210 2 AKMITLSGFAS------PVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKA- 71 (271)
Q Consensus 2 ~~tI~Vgnlp~------~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~- 71 (271)
+++|||+|||+ ++++++|+++|+++ |+|.+|+|+.|+. + ||||||+|+++++|++||+.++|..+.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~---G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA---GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc---CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 57999999999 99999999999999 9999999999998 5 9999999999999999999886655554
Q ss_pred eec
Q 024210 72 SYV 74 (271)
Q Consensus 72 r~~ 74 (271)
+++
T Consensus 83 r~l 85 (100)
T 3ns6_A 83 HRL 85 (100)
T ss_dssp CBC
T ss_pred eEE
Confidence 443
No 16
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=117.83 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=64.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..|+.+ ||||||+|.++++|++|++.+++..+.++++
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQA---GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 689999999999999999999999 99999999999887 9999999999999999999988887777766
No 17
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=116.18 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=62.0
Q ss_pred cceEEEeCCCCCC------cHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe-
Q 024210 2 AKMITLSGFASPV------SPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS- 72 (271)
Q Consensus 2 ~~tI~Vgnlp~~v------ta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r- 72 (271)
+++|||||||+.+ ++++|+++|+++ |.|.+|++. +..| ||||||+|+++++|++|++.++|..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT---CCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc---CCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 4789999999999 779999999999 999999998 3334 99999999999999999999998888877
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
++
T Consensus 77 ~l 78 (81)
T 2krb_A 77 TF 78 (81)
T ss_dssp CC
T ss_pred eE
Confidence 55
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.4e-16 Score=119.12 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=62.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|..|+.+ ||||||+|.++++|+.|++.+++..+.++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI---GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc---CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3689999999999999999999999 99999999999877 9999999999999999999886554444444
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=6.7e-16 Score=117.38 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=62.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||||||+++++++|+++|+++ |.|.+|+|..++. + ||||||+|.+.++|+.|++.++|..+.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV---GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4789999999999999999999999 9999999999986 3 9999999999999999999886655555544
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=114.63 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=63.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~ 73 (271)
+++|||+|||+++++++|+++|+++ |.|.+|++..++. + ||||||+|++.++|+.|++.+++ +.|+++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF---GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4689999999999999999999999 9999999999986 3 99999999999999999998755 4555555
Q ss_pred ccCC
Q 024210 74 VKRR 77 (271)
Q Consensus 74 ~Rpr 77 (271)
++++
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 5544
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=116.80 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=63.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~R 75 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++.+ ||||||+|.+.++|+.|++.+++ +.|++..++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAH---GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 689999999999999999999999 99999999999966 89999999999999999988754 555555555
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
|+
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 22
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=117.98 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=62.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCC-----eeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNS-----YLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~-----~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..|+. + ||||||+|.+.++|+.|++.+++. .|+++.+
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 579999999999999999999999 9999999999987 3 999999999999999999987554 4455544
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 444
No 23
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=119.23 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=64.1
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEE-EEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVS-DVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~-~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
++++|||+|||+++++++|+++|+++ |.|. +|+|+.|+. + ||||||+|.++++|++|++.+++..+.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM---GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT---TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 45799999999999999999999999 9999 999999986 3 899999999999999999998877776665
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=124.28 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=56.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc--eEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG--TVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNS 67 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~ 67 (271)
.||||+|||+++|+++|+++|++| | +|.+|+|+.|+.+ ||||||+|.++++|++|++.+++.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~---G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPY---ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTT---CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhh---CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 589999999999999999999999 7 5789999999873 999999999999999999987543
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=115.51 Aligned_cols=72 Identities=13% Similarity=0.276 Sum_probs=62.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~ 73 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|+.|+. + ||||||+|++.++|++|++ +++ +.|+++.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKF---GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSS---SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3689999999999999999999999 9999999999986 3 9999999999999999999 544 5555555
Q ss_pred ccCC
Q 024210 74 VKRR 77 (271)
Q Consensus 74 ~Rpr 77 (271)
++++
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 26
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=1.1e-15 Score=113.75 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|++..++. + ||||||+|.++++|++|+ .+++..+.++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGC---GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGG---CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 689999999999999999999999 9999999999975 3 999999999999999999 776655555544
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=9.9e-16 Score=114.03 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=60.2
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+++.++. + ||||||+|.++++|++|+++ ++..++++.+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i 82 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKF---GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVI 82 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEE
Confidence 3689999999999999999999999 9999999999986 4 99999999999999999977 4444554443
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=115.53 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=63.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++. + ||||||+|.++++|++|++.+++ +.|+++.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQA---GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 689999999999999999999999 9999999999985 4 99999999999999999998855 44555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 444
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=115.60 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=63.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|++..++.+ ||||||+|.++++|++|++.+++..+.++++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKY---GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTT---SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 589999999999999999999999 99999999999873 9999999999999999999988777766655
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8e-16 Score=115.84 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=63.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+++.++.+ ||||||+|.++++|++|++.+++..+.++++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTT---SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 589999999999999999999999 99999999999873 9999999999999999999987777766665
No 31
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=119.36 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=63.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|..++++ ||||||+|++.++|+.|++.+++..+.++.+
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA---GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 4689999999999999999999999 99999999999887 9999999999999999999886655555444
No 32
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.4e-16 Score=118.29 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhc-CcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCe-eEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEE-HTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSY-LKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~-~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~-L~~r~~ 74 (271)
..+|||+|||+++++++|+++|++ + |.|.+|+|+.|+.+ ||||||+|.+.++|+.|++.+++.. +.++++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVY---PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHC---TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 368999999999999999999999 9 99999999999866 9999999999999999999887766 666665
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-16 Score=122.33 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=59.9
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC--CCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG--NSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g--~~~L~~r~~ 74 (271)
+++|||||||++++++||+++|++| |+|.+|+|+.+ ||||||+|+++++|+.|++.++ +..|.++++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHH---CCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4689999999999999999999999 99999999976 7999999999999999999763 456666666
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=116.09 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=61.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC---C---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG---L---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~---g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++. . ||||||+|.+.++|+.|++.+++..++++.+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKV---GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 689999999999999999999999 9999999999876 2 8999999999999999999987665555554
No 35
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=2.2e-15 Score=118.17 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=64.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
++|||||||+++++++|+++|+++ |.|.+|+|+.|+. + ||||||+|++.++|++|++.+ +|+.|+++.++
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcc---CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 689999999999999999999999 9999999999986 4 999999999999999999875 56666666665
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
++
T Consensus 103 ~~ 104 (109)
T 2rs2_A 103 PR 104 (109)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=117.23 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=64.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcC------CC-----
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAG------NS----- 67 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g------~~----- 67 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|.+.++|+.|++.++ +.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQF---GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3689999999999999999999999 99999999999873 9999999999999999999876 54
Q ss_pred eeEEeeccCCC
Q 024210 68 YLKASYVKRRT 78 (271)
Q Consensus 68 ~L~~r~~Rpr~ 78 (271)
.|+++.++++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 45555555553
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-16 Score=117.07 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=62.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEE-EEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDV-EVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v-~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||+|||+++++++|+++|+++ |.|.+| +|+.|+. + ||||||+|+++++|+.|++.+++..+.++++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAF---GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4689999999999999999999999 999999 9999865 3 9999999999999999999886655555544
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=116.17 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++. + ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKY---GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 689999999999999999999999 9999999999987 3 9999999999999999999875544444333
No 39
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=116.97 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=61.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++..||||||+|++.++|++|++.+++..++++.+
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKY---GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 589999999999999999999999 999999998776559999999999999999999886655555544
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2.4e-15 Score=115.57 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=64.0
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC--------CeeEE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN--------SYLKA 71 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~--------~~L~~ 71 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|+.++.+ ||||||+|.+.++|+.|++.+++ +.|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPF---GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3689999999999999999999999 99999999999876 99999999999999999998744 55566
Q ss_pred eeccCC
Q 024210 72 SYVKRR 77 (271)
Q Consensus 72 r~~Rpr 77 (271)
+.++++
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 655443
No 41
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=115.72 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=65.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHH---cCCCeeEEeeccC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSL---AGNSYLKASYVKR 76 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~---~g~~~L~~r~~Rp 76 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|++.++|+.|++. ++|+.|+++.+++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTF---GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhc---CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 589999999999999999999999 9999999999986 4 99999999999999999996 4777888887766
Q ss_pred CC
Q 024210 77 RT 78 (271)
Q Consensus 77 r~ 78 (271)
+.
T Consensus 93 ~~ 94 (103)
T 2cqg_A 93 KQ 94 (103)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=1.5e-15 Score=113.93 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=61.2
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|||+|||+++++++|+++|+++ |.|.+|+|..+... ||||||+|.+.++|++|++.+++..++++.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNEC---GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3689999999999999999999999 99999999986433 9999999999999999999886655555544
No 43
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.7e-15 Score=122.14 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=74.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----c
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV-----K 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~-----R 75 (271)
+||||+|||+++++++|+++|+++ |.|.++++..++.+ ||||||+|.+.++|+.|++.+++..+.++++ +
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG---GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG---SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc---CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 689999999999999999999999 99999999999986 9999999999999999998887766655555 4
Q ss_pred CCCcCcccCCCceEEEeeecc
Q 024210 76 RRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 76 pr~~~~~~~~~~~L~~G~~vs 96 (271)
+....-.- +.-+|.+|.+..
T Consensus 78 ~~~~~~~~-~~~~l~v~nl~~ 97 (166)
T 3md3_A 78 QSQQSSSD-DTFNLFVGDLNV 97 (166)
T ss_dssp CCCCCCCT-TCEEEEEESCCT
T ss_pred CCCCCCCC-CCceEEECCCCC
Confidence 44333444 667888888643
No 44
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-16 Score=117.70 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=62.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE--------EEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSD--------VEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--------v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
.+|||||||+++++++|+++|+++ |.|.. |+|..|++ + ||||||+|.+.++|++|++.++|..+.+
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTT---SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh---CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 589999999999999999999999 99999 99999976 3 9999999999999999999987777766
Q ss_pred eec
Q 024210 72 SYV 74 (271)
Q Consensus 72 r~~ 74 (271)
+.+
T Consensus 91 ~~l 93 (99)
T 2la6_A 91 NPI 93 (99)
T ss_dssp SBC
T ss_pred cEE
Confidence 654
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=117.42 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=62.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPF---GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTT---CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3689999999999999999999999 9999999999975 3 9999999999999999999886655544444
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.5e-15 Score=117.10 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=64.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|||+|||+.+++++|+++|+++ |.|.+|+|+.++.+ ||||||+|.+.++|++|++.+++..+.++++
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3589999999999999999999999 99999999999976 9999999999999999999998887777665
No 47
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.9e-15 Score=118.19 Aligned_cols=71 Identities=11% Similarity=0.287 Sum_probs=63.0
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++++|||+|||+++++++|+++|+++ |.|.+|+++.++.+||||||+|.+.++|+.|++.++|..+.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY---GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 35799999999999999999999999 999999999877669999999999999999999886655555444
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=2.1e-15 Score=117.91 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++. + ||||||+|.+.++|+.|++.+++..+.++.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 589999999999999999999999 9999999999975 4 9999999999999999999886655544444
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.9e-15 Score=117.27 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.+.++|+.|++.++|..+.++++
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGG---SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 589999999999999999999999 9999999999976 3 9999999999999999999887666655554
No 50
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=118.73 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE-EEEecCCCC--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSD-VEVGQNKGL--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
.+|||+|||++++++||+++|+++ |.|.+ |+|+.|+.+ ||||||+|+++++|++|++.. +++.|++..+.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGL---EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTC---CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 589999999999999999999999 99987 999998666 999999999999999999972 33445555444
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
++
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=115.99 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=60.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecC-CC-C--CCeEEEEeCCHHHHHHHHHHc-CCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQN-KG-L--KAHAVVEFTTVEAADLIMSLA-GNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~d-r~-g--RGFaFVeF~~~e~A~~Ai~~~-g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.+ +. + ||||||+|.+.++|++|++.+ ++..+.++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTF---GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHcc---CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 689999999999999999999999 99999999998 44 3 999999999999999999988 6544444433
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.6e-15 Score=119.15 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=64.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|+.|+. + ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPF---GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTS---CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 689999999999999999999999 9999999999976 3 9999999999999999999998888877765
No 53
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=5.2e-16 Score=112.54 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=60.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+|||+|||+++++++|+++|+++ |+|.+|+++.++. + ||||||+|.++++|++|++ +++..++++++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF---GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT---SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 69999999999999999999999 9999999999986 4 9999999999999999998 67766666654
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=115.65 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=62.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |+|.+|+|..+ .+ ||||||+|.+.++|+.|++.+++ +.|+++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTT---SCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3689999999999999999999999 99999999999 55 99999999999999999998755 55555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 444
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=115.27 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++.+ ||||||+|+++++|+.|++.+++ +.|++..+
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKY---GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHH---SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 689999999999999999999999 99999999998863 99999999999999999988755 55555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 444
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=116.12 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=60.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|++.++|+.|++.+++..+.++++
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTT---SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 689999999999999999999999 99999999998763 9999999999999999999886544444433
No 57
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=120.64 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++.+ ||||||+|++.++|++|++.+++..+.++++
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKH---GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTS---SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 689999999999999999999999 99999999999866 9999999999999999999886554444433
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=1.4e-15 Score=119.17 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=61.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.|+. + ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPF---GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGG---SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 589999999999999999999999 9999999999985 4 9999999999999999999886655554444
No 59
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=118.73 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=59.6
Q ss_pred CcceEEEeCCCCCC------cHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 1 MAKMITLSGFASPV------SPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 1 M~~tI~Vgnlp~~v------ta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
|+++|||||||+.+ ++++|+++|+++ |.|.+|+|+ ...| ||||||+|+++++|+.|++.++|..+.++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG---SCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC---CCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45799999999999 789999999999 999999999 3334 99999999999999999999866555554
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=126.77 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc--eEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG--TVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||+++++++|+++|+++ | .|.+|+|+.|+. | ||||||+|.+.++|+.||+.++|..|.++.+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSI---GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT---TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHH---CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 589999999999999999999999 9 999999999986 4 9999999999999999999997766666655
No 61
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=119.90 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=63.2
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||||||+++++++|+++|+++ |+|.+|++..|+.+ ||||||+|.+.++|++|++.++|..++++++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhc---CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3689999999999999999999999 99999999999876 9999999999999999999887666655554
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-16 Score=112.24 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=60.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.||||+|||+++++++|+++|+++ |.|.+|+++.++. + ||||||+|.++++|++|++.++ ..++++++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT---SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 479999999999999999999999 9999999999986 3 9999999999999999999776 55555543
No 63
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=118.93 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=57.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
..+|||+|||++++++||+++|+++ |.| +|+|+.|+.+ ||||||+|+++++|++||++ ++..|.+|
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~---G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 82 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPL---NPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-DKANMQHR 82 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSC---CCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-SSCCSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---Cce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeECCc
Confidence 4689999999999999999999998 855 9999999976 99999999999999999964 54444333
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=117.87 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=60.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.|+. + ||||||+|.+.++|++|+ .+++..+.++.+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 96 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAV---GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPI 96 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEE
Confidence 689999999999999999999999 9999999999987 3 999999999999999999 776555544443
No 65
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=117.40 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=61.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEE--------EEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVS--------DVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--------~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
++|||+|||+++++++|+++|+++ |.|. .|+|..|+. + ||||||+|.+.++|++|++.+++..+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQC---GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTT---SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 689999999999999999999999 9999 799999976 4 9999999999999999999886655555
Q ss_pred eec
Q 024210 72 SYV 74 (271)
Q Consensus 72 r~~ 74 (271)
+.+
T Consensus 93 ~~l 95 (113)
T 2cpe_A 93 SKL 95 (113)
T ss_dssp EEC
T ss_pred CEE
Confidence 544
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.5e-15 Score=113.85 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=60.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC--C--CCeEEEEeCCHHHHHHHHHHcCCC-----eeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG--L--KAHAVVEFTTVEAADLIMSLAGNS-----YLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~--g--RGFaFVeF~~~e~A~~Ai~~~g~~-----~L~~r~ 73 (271)
.+|||+|||+++++++|+++|+++ | |.+|+|+.++. + ||||||+|+++++|++|+ .+++. .|+++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTS---C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHC---C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 589999999999999999999999 9 99999999986 4 999999999999999999 77554 445555
Q ss_pred ccCC
Q 024210 74 VKRR 77 (271)
Q Consensus 74 ~Rpr 77 (271)
++++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 5544
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7e-15 Score=114.59 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=58.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
..+|||+|||++++++||+++|+++ |+|..|+|..| |||||+|++.++|++||+.+++..|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 4689999999999999999999999 99999999987 999999999999999999987666655
No 68
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=9.1e-16 Score=117.64 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=63.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHH---HcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMS---LAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~---~~g~~~L~~r~~ 74 (271)
.++|||||||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|++.++|+.|++ .++|+.|.+..+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARY---GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEEC
Confidence 4689999999999999999999999 99999999999865 9999999999999999999 667777775555
No 69
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=116.46 Aligned_cols=68 Identities=13% Similarity=0.295 Sum_probs=61.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|..|+|+.++.+ ||||||+|+++++|++|++. ++..+.++.+
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQY---GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 689999999999999999999999 99999999999763 99999999999999999998 6655555555
No 70
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.7e-15 Score=117.06 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR 76 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp 76 (271)
|+.-||||||++.+|+++|+++|.+| |+|.++++..+ ||||||+|.++++|+.||+.+++..|.+|++|-
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~---G~V~~~~l~~~---kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH---GPLVSFHPYLN---QGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh---CCEEEEEEcCC---CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 45679999999999999999999999 99999999763 799999999999999999999887777777643
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=119.89 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=61.9
Q ss_pred cceEEEeCCCCCCcHHHHH---HHHhcCcCCceEEEEEEecCCC-----C-CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 2 AKMITLSGFASPVSPKALK---DFLEEHTGEGTVSDVEVGQNKG-----L-KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk---~~Fe~~~g~G~V~~v~I~~dr~-----g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
.++|||+|||+++++++|+ ++|+++ |+|.+|+|..++. . ||||||+|+++++|++||+.+++..|.++
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~---G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKF---GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTT---SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhcc---CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3689999999999999999 999999 9999999998875 1 69999999999999999999866555555
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
++
T Consensus 92 ~l 93 (111)
T 2cpi_A 92 TL 93 (111)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=116.46 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.+.++|+.|++.++|..+.++++
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPF---GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTT---SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 589999999999999999999999 9999999999976 3 9999999999999999999876544444443
No 73
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8e-16 Score=121.22 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=60.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceE-EEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTV-SDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V-~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..+|||+|||++++++||+++|+++ |.| .+|+|+.|+.+ ||||||+|++.++|++||+. ++..|.++++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGI---PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTS---CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhC---CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3689999999999999999999999 999 89999999976 99999999999999999988 5544444433
No 74
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=116.82 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=60.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCC--CC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNK--GL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr--~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+||||||||+++++++|+++|+++ | |.+|+|..++ .+ ||||||+|.+.++|++|+ .+++..++++.+
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSS---C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 4689999999999999999999999 9 9999999998 34 999999999999999999 777666655554
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=7.1e-16 Score=116.36 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||++++++||+++|+++ |.|..++++.++.. ||||||+|.++++|++|++.+++..+.++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTS---CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 589999999999999999999999 99999999988764 8999999999999999999988888877766
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=115.69 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|+.++.+ ||||||+|.+.++|++|++.+++ +.|+++.+
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGF---GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTT---SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 589999999999999999999999 99999999999873 99999999999999999999854 44555555
No 77
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-16 Score=120.46 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=60.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCce---EEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGT---VSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.+|||+|||+++|++||+++|+++ |. |.+|+|+.|+.| ||||||+|++.++|++|++ +++..+.+|.+
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~---g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDC---RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTS---CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3589999999999999999999998 77 999999999887 9999999999999999999 65555544443
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=2e-15 Score=116.24 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCe
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSY 68 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~ 68 (271)
++|||+|||+++++++|+++|+++ |.|..|+|+.|+. + ||||||+|.+.++|++|++.+++..
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEF---GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHH---SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc
Confidence 589999999999999999999999 9999999999987 3 9999999999999999999875543
No 79
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=3.9e-15 Score=128.22 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV----- 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~----- 74 (271)
.||||||||+++|+++|+++|+++ |+|.+|+|+.|+.+ ||||||+|.+.++|+.|++.+++..+.++.+
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPA---GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 589999999999999999999999 99999999999873 9999999999999999999998777766666
Q ss_pred cCCCcCcccCCCceEEEeeecc
Q 024210 75 KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 75 Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
.+......- ...+|.+|.+-.
T Consensus 93 ~~~~~~~~~-~~~~l~v~nl~~ 113 (213)
T 4f02_A 93 QRDPSLRKS-GVGNIFIKNLDK 113 (213)
T ss_dssp CCCTHHHHH-CTTEEEEESCCT
T ss_pred ccccccccc-ccccceECCccc
Confidence 222222333 456788888754
No 80
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=9.8e-15 Score=117.77 Aligned_cols=89 Identities=8% Similarity=0.128 Sum_probs=74.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec----
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV---- 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~---- 74 (271)
.+||||+|||+++++++|+++|+++ |.|.++++..++. + ||||||+|.++++|+.|++.+++..+.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 3689999999999999999999999 9999999999984 4 8999999999999999999887766655555
Q ss_pred -cCCCcCcccCCCceEEEeeecc
Q 024210 75 -KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 75 -Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
+|. .-.. ++-+|.+|.+..
T Consensus 79 ~~~~--~~~~-~~~~l~v~nl~~ 98 (167)
T 1fxl_A 79 ARPS--SASI-RDANLYVSGLPK 98 (167)
T ss_dssp CCCC--CGGG-TTCEEEEESCCT
T ss_pred cCCC--cccC-CCCcEEECCCCC
Confidence 333 2334 667888888754
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7e-16 Score=111.64 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=60.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
||||+|||+++++++|+++|+++ |.|.+|+++.++. + ||||||+|+++++|++|+++ ++..+.++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l 70 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF---GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKC 70 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH---SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 69999999999999999999999 9999999999887 3 99999999999999999997 5555655544
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.8e-15 Score=118.23 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=60.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.+|||+|||+++++++|+++|+++ |.|..|+|+.++. + +|||||+|.+.++|+.|++.+++..+.++.
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 589999999999999999999999 9999999999985 3 999999999999999999988654444433
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.1e-15 Score=115.79 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=59.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-------CCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-------g~~~L~~r~~ 74 (271)
+++|||+|||++++++||+++|++| |.|.+|+|+.+ ||||||+|++.++|+.|++.+ +|+.|.+.-+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPF---GKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 4689999999999999999999999 99999999865 799999999999999999865 3444455544
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 444
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=8.3e-16 Score=122.40 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=59.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCce---EEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGT---VSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.+|||+|||+++|++||+++|+++ |. |.+|+|+.|+.+ ||||||+|+++++|++|++ +++..|.+|.
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~---G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDC---TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTS---CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHc---CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 589999999999999999999998 88 899999999887 9999999999999999999 6554444443
No 85
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=116.22 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=60.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|++..++. + ||||||+|.+.++|+.|++.+++..+.++.+
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEV---GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTT---SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhc---CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 689999999999999999999999 9999999999976 4 9999999999999999999886544444333
No 86
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.8e-15 Score=120.88 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=60.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc-eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG-TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||++++++||+++|+++ | +|..++|..++ .||||||+|++.++|++||+.++|..++++.+
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~---G~~v~~v~i~~~~-~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAREN---SLETTFSSVNTRD-FDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHH---TCCCSEEECSSCS-SSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHh---CCeeEEEEEEcCC-CCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 489999999999999999999999 9 99999996532 48999999999999999999987766666655
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=2.8e-15 Score=121.55 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=62.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|+.|+.+ ||||||+|++.++|++|++.+++..++++++
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTT---SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 589999999999999999999999 99999999999863 9999999999999999999886665555554
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=118.79 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|.+++|+.++. + ||||||+|+++++|++|++.+++..++++++
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 689999999999999999999999 9999999999976 3 9999999999999999999987777766655
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=3.2e-15 Score=118.81 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~R 75 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|..++.+ ||||||+|.+.++|+.|++.+++ +.|+++.+.
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTT---SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 589999999999999999999999 99999999999876 99999999999999999998755 555555553
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=116.41 Aligned_cols=71 Identities=10% Similarity=0.218 Sum_probs=65.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKR 76 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rp 76 (271)
.+|||+|||+++++++|+++|+++ |.|.+|+|+.++.+ ||||||+|.+.++|+.|++.++|..++++++++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPF---GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 589999999999999999999999 99999999999865 999999999999999999999998888776643
No 91
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=118.81 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.+|||+|||++++++||+++|+++ .|.+|+|+.|++| ||||||+|+++++|++|++ +++..|.+|.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~----~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 84 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL----RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRY 84 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS----CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC----CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 489999999999999999999997 5889999999887 9999999999999999994 5544444443
No 92
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=120.03 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=61.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-------CCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-------g~~~L~~r~~ 74 (271)
+++|||||||++++++||+++|++| |+|.+|+|+.+ ||||||+|++.++|++|++.+ +|+.|++..+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTT---SCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 4689999999999999999999999 99999999976 699999999999999999865 4566677666
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 105 ~~k 107 (119)
T 2ad9_A 105 NHK 107 (119)
T ss_dssp SSS
T ss_pred cCC
Confidence 554
No 93
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=8.9e-15 Score=117.92 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=62.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|+.++.+ ||||||+|++.++|++|++.+++ +.|++..+
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERY---GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHH---SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 689999999999999999999999 99999999999873 99999999999999999998855 55555555
Q ss_pred cC
Q 024210 75 KR 76 (271)
Q Consensus 75 Rp 76 (271)
++
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 94
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=1.6e-14 Score=117.16 Aligned_cols=89 Identities=9% Similarity=0.119 Sum_probs=73.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec----
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV---- 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~---- 74 (271)
+++|||+|||+++++++|+++|+++ |.|.+|++..++. + ||||||+|.++++|+.|++.+++..+.++++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI---GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 3689999999999999999999999 9999999999875 4 9999999999999999999887766655555
Q ss_pred -cCCCcCcccCCCceEEEeeecc
Q 024210 75 -KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 75 -Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
+|.. -.. ++-+|+++.+..
T Consensus 80 ~~~~~--~~~-~~~~l~v~nl~~ 99 (168)
T 1b7f_A 80 ARPGG--ESI-KDTNLYVTNLPR 99 (168)
T ss_dssp CCCCS--STT-TTCEEEEESCCT
T ss_pred cCCCc--ccC-CCCCEEEeCCCC
Confidence 3332 233 567788888654
No 95
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=7.1e-15 Score=111.74 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc---CCCeeEEeeccCCC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA---GNSYLKASYVKRRT 78 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~---g~~~L~~r~~Rpr~ 78 (271)
..||||||||+++|+++|+++|+++ |+|.+|+|+.+ .||||||+|+++++|+++...- +++.++++.++|+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~---G~i~~v~i~~~--srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQY---GEVVDVFIPKP--FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCSS--CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEeeC--CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCC
Confidence 3689999999999999999999999 99999999986 4999999999999998433221 35666777666653
No 96
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=115.28 Aligned_cols=72 Identities=15% Similarity=0.352 Sum_probs=62.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
++|||+|||+++++++|+++|+++ |+|.+|+|+.|+. + ||||||+|.+.++|+.|++.. +|+.|+++.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQW---GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSS---CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 589999999999999999999999 9999999999987 3 999999999999999999872 44555666555
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 97
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=4.9e-15 Score=113.91 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=59.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ | |.+|+|+.|+. + ||||||+|+++++|+.|+ .+++..+.++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~---g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDL---S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS---C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC---C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 589999999999999999999999 7 99999999987 3 999999999999999999 776655544444
No 98
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=109.67 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=56.9
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK 70 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~ 70 (271)
.++|||+|||+++++++|+++|+++ |.|.+|++.++ ||||||+|++.++|++|++.+++..+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF---GSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT---SCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 3689999999999999999999999 99999999865 799999999999999999988554444
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=1.2e-14 Score=119.19 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
.+|||||||+++++++|+++|+++ |.|.+|+|..|+. + ||||||+|.+.++|+.|++.++| +.|+++.+
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHH---SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 589999999999999999999999 9999999999975 4 99999999999999999998855 55555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 100
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=9.9e-16 Score=126.50 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCce---EEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcC-----CCeeEEe
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGT---VSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAG-----NSYLKAS 72 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~---V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g-----~~~L~~r 72 (271)
.+|||+|||+++|++||+++|+++ |. |.+|+|+.|+++ ||||||+|+++++|++|++ ++ ++.|++.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~---G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDC---TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTC---CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh---CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 589999999999999999999998 98 899999999887 9999999999999999999 64 4555555
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
.+
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=8.8e-16 Score=115.00 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+++++++|+++|+++ |.|.+|++..++. + ||||||+|.+.+ |+.|++.+++..+.++++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF---GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH---TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 589999999999999999999999 9999999999987 3 999999999999 999999986655555544
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-15 Score=115.58 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=59.2
Q ss_pred cceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-------CCCeeEEee
Q 024210 2 AKMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-------g~~~L~~r~ 73 (271)
+++|||+|||+ +++++||+++|++| |+|.+|+|+.+ ||||||+|+++++|+.||+.+ +|+.|.+..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~f---G~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPF---GVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGG---SCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46899999999 99999999999999 99999999865 599999999999999999975 344555555
Q ss_pred ccC
Q 024210 74 VKR 76 (271)
Q Consensus 74 ~Rp 76 (271)
+++
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=113.36 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=60.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-------CCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-------g~~~L~~r~~ 74 (271)
+++|||+|||+++++++|+++|++| |+|.+|+|+.+ ||||||+|++.++|+.|++.+ +|+.|++..+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKF---GTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTT---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 3689999999999999999999999 99999999864 799999999999999999865 4566666666
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 89 ~~~ 91 (104)
T 1wex_A 89 TSK 91 (104)
T ss_dssp SSS
T ss_pred cCc
Confidence 443
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-15 Score=115.19 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|..++++.++.+ ||||||+|+++++|++|++.+++..+.++.+
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS---CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 579999999999999999999999 99998888887763 9999999999999999999987776666655
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.7e-15 Score=113.82 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCce-EEEEEEe-cCCCC---CCeEEEEeCCHHHHHHHHHHcC--CC-----eeE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGT-VSDVEVG-QNKGL---KAHAVVEFTTVEAADLIMSLAG--NS-----YLK 70 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~-V~~v~I~-~dr~g---RGFaFVeF~~~e~A~~Ai~~~g--~~-----~L~ 70 (271)
++|||||||+++++++|+++|+++ |. |.+|+++ .|+.. ||||||+|.++++|+.|++.++ +. .|+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~---G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKV---TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHH---STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHh---cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 589999999999999999999999 88 9999998 77762 9999999999999999999873 34 445
Q ss_pred EeeccCC
Q 024210 71 ASYVKRR 77 (271)
Q Consensus 71 ~r~~Rpr 77 (271)
+..++|+
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 5555554
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=108.99 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=59.0
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
..+|||+|||++++++||+++|+++ .|.+|+|+.+..+ ||||||+|+++++|++|++ +++..+.++.+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL----KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS----CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC----CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 4689999999999999999999997 5889999999666 9999999999999999999 86555544443
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=111.19 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=59.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeeccC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGN-----SYLKASYVKR 76 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~Rp 76 (271)
.++|||+|||+++++++|+++|+++ |.|. +++++++ .||||||+|.+.++|+.|++.+++ +.|+++.+++
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~---G~v~-~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALREL---GSVP-LRLTWQG-PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHT---TCCC-SEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhc---CCEE-EEEEcCC-CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 5799999999999999999999999 9996 7777652 389999999999999999998855 4455555555
Q ss_pred C
Q 024210 77 R 77 (271)
Q Consensus 77 r 77 (271)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=1e-14 Score=111.61 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=61.0
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||||||+++++++|+++|+++ |.|.+|++.. .||||||+|.+.++|+.|++.+++..++++.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF---GFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT---SCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC---CCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4689999999999999999999999 9999999982 37999999999999999999988877777766
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=7.9e-15 Score=116.08 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..|+. + ||||||+|.+.++|+.|+ .+++..+.++.+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 107 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSC---GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTI 107 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTT---SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 589999999999999999999999 9999999999875 3 999999999999999999 676555544444
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=107.22 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=58.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCC-----eeEEeeccCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNS-----YLKASYVKRR 77 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~-----~L~~r~~Rpr 77 (271)
++|||+|||+++++++|+++|+++ |+|.+|++. ||||||+|.++++|+.|++.+++. .|+++.++++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQY---GKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTS---SCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 689999999999999999999999 999999998 799999999999999999988654 4555554444
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=112.04 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=59.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|+|..+ ||||||+|++.++|+.|++.+++..+.++.+
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPF---GQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHH---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3689999999999999999999999 99999999987 7999999999999999999886655555544
No 112
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=1.3e-14 Score=119.59 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=62.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |+|.+|+|+.++.+ ||||||+|++.++|++|++.+++..|.++++
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKS---GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3689999999999999999999999 99999999999873 8999999999999999999886655544444
No 113
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=114.91 Aligned_cols=67 Identities=9% Similarity=0.224 Sum_probs=59.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC----C--CCeEEEEeCCHHHHHHHHHHc---CCCeeEEe
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG----L--KAHAVVEFTTVEAADLIMSLA---GNSYLKAS 72 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~----g--RGFaFVeF~~~e~A~~Ai~~~---g~~~L~~r 72 (271)
.++|||||||+++++++|+++|+++ |.|. ++++.++. | ||||||+|+++++|++||+.+ +|+.+.+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~---G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRF---GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTT---CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 5789999999999999999999999 9999 88888764 3 999999999999999999988 77666554
No 114
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=9.5e-15 Score=119.49 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEE-EEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVS-DVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~-~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++|++||+++|+++ |.+. +|+|+.|++| ||||||+|+++++|++|+++. +..|.+|++
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~---~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~-~~~l~gR~I 113 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL---EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH-KERIGHRYI 113 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS---CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTT-TCCBTTBCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC---CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHC-CCEECCEEE
Confidence 589999999999999999999998 5443 9999999987 999999999999999999864 344444443
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=109.08 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=58.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCC-----eeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNS-----YLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~-----~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.| +++.+..+ ||||||+|+++++|++|++.+++. .|+++.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKA---TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSC---SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4689999999999999999999998 887 67777555 999999999999999999988654 4455555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 444
No 116
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=117.26 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred ceEEE--eCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITL--SGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~V--gnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
++||| ||||+++++++|+++|++| |+|.+|.|.. +||||||+|+++++|++|++.++|+.+
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~f---G~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHH---SCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 68999 8899999999999999999 9999999875 379999999999999999999999887
No 117
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=120.61 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE--EEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCC----eeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSD--VEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNS----YLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~----~L~~r~ 73 (271)
+||||||||+++++++|+++|+++ |.|.. |+|+.|+. + ||||||+|++. +|++|++.+++. .+.+++
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~---G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPY---AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGG---CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh---CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 689999999999999999999999 99977 99999995 4 99999999999 999999999887 676666
Q ss_pred c
Q 024210 74 V 74 (271)
Q Consensus 74 ~ 74 (271)
+
T Consensus 100 l 100 (131)
T 2m2b_A 100 I 100 (131)
T ss_dssp C
T ss_pred E
Confidence 5
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=2.2e-14 Score=110.30 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=59.6
Q ss_pred CcceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++++|||||||+ ++++++|+++|+++ |.|.+|++. ||||||+|++.++|++|++.++|..+.++.+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~---G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGG---SCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 457999999999 99999999999999 999999995 8999999999999999999887766665554
No 119
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.53 E-value=2.3e-14 Score=119.30 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=68.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.++++|+.|++.. +|+.|.+..+.
T Consensus 14 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 14 RKLFIGGLSFETTDESLRSHFEQW---GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 689999999999999999999999 9999999999986 4 999999999999999999882 34444444443
Q ss_pred CCC----cCcccCCCceEEEeeec
Q 024210 76 RRT----PHYKLGDDLKLNFGCQI 95 (271)
Q Consensus 76 pr~----~~~~~~~~~~L~~G~~v 95 (271)
++. +.... ..-+|++|.+.
T Consensus 91 ~~~~~~~~~~~~-~~~~l~V~nLp 113 (196)
T 1l3k_A 91 SREDSQRPGAHL-TVKKIFVGGIK 113 (196)
T ss_dssp C------------CCSEEEEECCT
T ss_pred CcccccccccCC-CcceEEEeCCC
Confidence 221 11122 34678888764
No 120
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.5e-14 Score=107.16 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=60.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCc-CCc-------eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHT-GEG-------TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~-g~G-------~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.++|||||||+++++++|+++|+++. -.| .|.++++..+ ||||||+|.++++|++|+ .+++..++++.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 47999999999999999999999971 013 8999999865 699999999999999999 88888888877
Q ss_pred c
Q 024210 74 V 74 (271)
Q Consensus 74 ~ 74 (271)
+
T Consensus 82 l 82 (87)
T 2hzc_A 82 L 82 (87)
T ss_dssp C
T ss_pred E
Confidence 6
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=112.06 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=54.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNS 67 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~ 67 (271)
+++|||+|||+++|++||+++|+++ |+|.+|+++.+ ||||||+|++.++|++|++.+++.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~f---G~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEF---GPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCC
Confidence 4689999999999999999999999 99999999853 799999999999999999987443
No 122
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=2.3e-15 Score=124.88 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=59.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||+|||+++|++||+++|+++ | |.+|+|+.|+++ ||||||+|+++++|++|| .+++..|.+|.+
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~---G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPL---N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSC---C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 4689999999999999999999998 8 669999999887 999999999999999999 555555555544
No 123
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=105.99 Aligned_cols=66 Identities=15% Similarity=0.339 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-CCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-GNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|++..+ ||||||+|.+.++|+.|++.+ ++..+.++++
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~---G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQF---GEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTT---SCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhC---CCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 689999999999999999999999 99999999975 699999999999999999987 8777777665
No 124
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-15 Score=121.71 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceE----EEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTV----SDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V----~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
.+|||+||||++|++||++||+++ |.| .+|+|+.|+.+ ||||||+|+++++|++|++. +++.|.+|
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~---g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQH---CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTT---SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhh---CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 589999999999999999999998 664 79999999876 99999999999999999987 44444333
No 125
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=1.3e-14 Score=117.78 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=71.4
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHH---cCCCeeEEeecc
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSL---AGNSYLKASYVK 75 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~---~g~~~L~~r~~R 75 (271)
+++|||||||+++++++|+++|+++ |.|.+|+++.++. + ||||||+|.++++|+.|++. ++|+.+.+..+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKY---GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTT---CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEccccccc
Confidence 4689999999999999999999999 9999999999976 4 99999999999999999996 355555555443
Q ss_pred CCCcCcccCCCceEEEeeecc
Q 024210 76 RRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 76 pr~~~~~~~~~~~L~~G~~vs 96 (271)
++. -.- +.-+|.+|.+..
T Consensus 80 ~~~--~~~-~~~~l~V~nlp~ 97 (167)
T 2cjk_A 80 PRD--EQD-KTGKIFVGGIGP 97 (167)
T ss_dssp CHH--HHH-HCEEEEEEEECT
T ss_pred chh--hcc-CCCeEEECCCCC
Confidence 321 122 456788888654
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=109.47 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-----CCCeeEEeeccC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-----GNSYLKASYVKR 76 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-----g~~~L~~r~~Rp 76 (271)
.||||+|||+++++++|+++|+++ |+|.+|++..+ .||||||+|+++++|++|++.+ +|+.|+++.+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY---GPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH---CCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 489999999999999999999999 99999999988 5899999999999999999976 556677766633
No 127
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=9e-15 Score=110.67 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=60.1
Q ss_pred cceEEEeCCCCCCcHHHHH----HHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALK----DFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||+|||+++++++|+ ++|+++ |.|.+|++..+...||||||+|.+.++|+.|++.++|..+.++++
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~---G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGG---SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhC---CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3689999999999999999 999999 999999998421129999999999999999999887666655554
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=6.2e-15 Score=120.27 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=62.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|++.++|++|++.+++ +.|+++.+
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGG---SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 589999999999999999999999 9999999999886 3 99999999999999999998755 45555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
++.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 444
No 129
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=117.96 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=58.9
Q ss_pred cceEEEeCCCCCCcHHHHH----HHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALK----DFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||||||+++++++|+ ++|++| |.|.+|.+..+...||||||+|++.++|+.|++.++|..+.++++
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~---G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQ---GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccC---CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3689999999999999977 699999 999999886533339999999999999999999987655555544
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=1.9e-14 Score=113.04 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=58.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+++++++|+++|+++ |.|.+|++. ||||||+|.+.++|+.|++.++|..+.++.+
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPF---GPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTT---SCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 689999999999999999999999 999999999 7999999999999999999987766665555
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.1e-14 Score=106.65 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.|.+|++. ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~-g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNI-KPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTT-STTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 589999999999999999999997 55899999876 8999999999999999999886554444443
No 132
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=107.49 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=58.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|.+|++. ||||||+|.+.++|+.|++.+++..++++.+
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERR---GRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3689999999999999999999999 999999998 6799999999999999999886655555544
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.5e-14 Score=114.44 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=59.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.+|||+|||++++++||+++|+++ |+|..|+|+.| |||||+|++.++|++||+.+++..|+++.
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGG---SCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 589999999999999999999999 99999999877 99999999999999999998777776655
No 134
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=108.56 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=60.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc---CCCeeEEeeccCCC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA---GNSYLKASYVKRRT 78 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~---g~~~L~~r~~Rpr~ 78 (271)
.++|||||||+++++++|+++|+++ |+|.+|+|+.+ .||||||+|++.++|++|+... +++.|++..++|+.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY---GDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT---SCCCEEECCSS--CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEEecC--CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCC
Confidence 5799999999999999999999999 99999999876 4899999999999998664431 55667777666553
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=106.05 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCe-----eEEeeccC
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSY-----LKASYVKR 76 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~-----L~~r~~Rp 76 (271)
.++|||+|||+++++++|+++|+++ |.|.+|++. |+||||+|++.++|++|++.+++.. |+++.+++
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEY---GPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTT---SCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3689999999999999999999999 999999998 6799999999999999999886544 45555544
Q ss_pred C
Q 024210 77 R 77 (271)
Q Consensus 77 r 77 (271)
+
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7e-15 Score=122.56 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=61.9
Q ss_pred CcceEEEeCC----CCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC---CCeEEEEeCC----H-HH---HHHHHH--H
Q 024210 1 MAKMITLSGF----ASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL---KAHAVVEFTT----V-EA---ADLIMS--L 63 (271)
Q Consensus 1 M~~tI~Vgnl----p~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g---RGFaFVeF~~----~-e~---A~~Ai~--~ 63 (271)
|.++|||||| ||++++++|+++|++| |+|.+|++++|+++ ||||||+|.+ + ++ |..|+. .
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~f---GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKY---GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTT---SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 8999999999 9999999999999999 99999999999995 9999999996 3 32 788888 6
Q ss_pred cCCCeeEEeecc
Q 024210 64 AGNSYLKASYVK 75 (271)
Q Consensus 64 ~g~~~L~~r~~R 75 (271)
++|..+.|+.+|
T Consensus 78 lng~~I~Gr~ir 89 (136)
T 2j8a_A 78 SSGCFIMGFKFE 89 (136)
T ss_dssp TTCEEETTEEEE
T ss_pred hcCCeecCcEEE
Confidence 677777777763
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=108.50 Aligned_cols=69 Identities=12% Similarity=0.265 Sum_probs=59.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCe-----eEEeeccCC
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSY-----LKASYVKRR 77 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~-----L~~r~~Rpr 77 (271)
++|||+|||+++++++|+++|+++ |.|.+|++..+ ||||||+|.+.++|++|++.+++.. |+++.++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKY---GKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTT---CCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhc---CCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 589999999999999999999999 99999999854 6999999999999999999886544 455544544
No 138
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=112.51 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=58.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|++| |.|.+|+|.. .||||||+|.+.++|+.||+.+++..+.++++
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRF---GSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 589999999999999999999999 9999999874 37999999999999999999987766655554
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=3.1e-14 Score=109.61 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=56.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|. ||||||+|.++++|++|++.+++..+.++++
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQF---GKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 589999999999999999999999 999999998 7899999999999999999886544444433
No 140
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=2e-14 Score=111.89 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=58.8
Q ss_pred CcceEEEeCCCCC-CcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MAKMITLSGFASP-VSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|+++|||+|||++ +++++|+++|+++ |.|..|+| .||||||+|++.++|+.|++.+++..++++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY---GRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG---SCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3579999999999 9999999999999 99999999 38999999999999999999887666655555
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=1.5e-14 Score=128.05 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=60.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc--eEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG--TVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G--~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++|+++|+++|+++ | +|.+|+|+.|+. + ||||||+|++.++|++||+.+++..|.++.+
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~---G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTT---TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHH---CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 479999999999999999999999 9 999999999986 3 9999999999999999999886554444433
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.50 E-value=3.8e-14 Score=118.33 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+.+++++|+++|++| |.|..|+|+.++. + ||||||+|.+.++|+.||+.+++..|.++++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcC---CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 579999999999999999999999 9999999999976 3 9999999999999999999887666655554
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=8.2e-15 Score=112.09 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=59.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~ 73 (271)
..+|||||||+++++++|+++|+++ |.|.. .++.++. + ||||||+|++.++|++|++ +++ +.|+++.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISEL---FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3689999999999999999999999 99988 6666655 3 9999999999999999998 754 4555555
Q ss_pred ccCC
Q 024210 74 VKRR 77 (271)
Q Consensus 74 ~Rpr 77 (271)
++++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5544
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.7e-14 Score=108.84 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=56.3
Q ss_pred ceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
++|||||||+ ++++++|+++|+++ |.|.+|+|. ||||||+|.+.++|+.|++.+++..+.+++
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~---G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTT---CCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 5899999999 99999999999999 999999996 899999999999999999988654444443
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=106.75 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=57.8
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+++++++|+++|+++ |.|.+| +.++.. + ||||+|.++++|++|++ +++..+.++.+
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAF---GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGT---SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 589999999999999999999999 999987 666654 7 99999999999999999 87777766666
No 146
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=4.6e-14 Score=122.57 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=62.2
Q ss_pred cceEEEeCCC-CCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFA-SPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp-~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+.|||||||| +++++++|+++|++| |.|.+|+|+.++ ||||||+|+++++|+.||+.++|..|.++++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~---G~v~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLY---GNVEKVKFMKSK--PGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTT---SCEEEEEECTTS--TTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCeEEEEEecCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 3689999999 899999999999999 999999998765 8999999999999999999998877766665
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=3e-14 Score=122.65 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=62.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++++++|+++|+++ |.|.+|+|+.|+.+ ||||||+|.+.++|++||+.++|..|.++++
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccceECCcccccHHHHHHHHHhhc---CCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 479999999999999999999999 99999999999876 9999999999999999999987666655554
No 148
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.3e-15 Score=118.42 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=57.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
.+|||+|||+++++++|+++|+++ |.|..+.++.++. + ||||||+|++.++|++||+ +++ +.|++..+
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKL---DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSS---CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 589999999999999999999998 9998865555544 4 9999999999999999999 755 45555554
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=7.9e-14 Score=114.11 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=59.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+++++++|+++|+++ |.|.+|+|..+ .||||||+|.+.++|+.|++.++|..+.++++
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYY---GPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHH---SCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 689999999999999999999999 99999999987 38999999999999999999886655544444
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=6.1e-14 Score=114.19 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=71.1
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-----CCeEEEEeCCHHHHHHHHHHcCCCee-------
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-----KAHAVVEFTTVEAADLIMSLAGNSYL------- 69 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-----RGFaFVeF~~~e~A~~Ai~~~g~~~L------- 69 (271)
++||||+|||+++++++|+++|+++ |.|.+|+|+.++.+ ||||||+|.++++|+.|++.+++..+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQY---GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 4689999999999999999999999 99999999998853 89999999999999999998865433
Q ss_pred -EEeeccCCCcCcccCCCceEEEeeecc
Q 024210 70 -KASYVKRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 70 -~~r~~Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
.+...++.. .-.. +.-+|++|.+..
T Consensus 80 ~~~~~~~~~~-~~~~-~~~~l~v~nl~~ 105 (175)
T 3nmr_A 80 IQMKPADSEK-NNAV-EDRKLFIGMISK 105 (175)
T ss_dssp CEEEECGGGC-CSCG-GGSEEEEESCCT
T ss_pred eEEccccccc-cccC-CCCeEEEcCCCC
Confidence 343332221 1223 456788888643
No 151
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.2e-14 Score=113.79 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=60.2
Q ss_pred cceEEEeCCCCC-CcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc-------CCCeeEEee
Q 024210 2 AKMITLSGFASP-VSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA-------GNSYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~-------g~~~L~~r~ 73 (271)
+++|||+|||++ ++++||+++|++| |+|.+|+|..+ ||||||+|++.++|+.|++.+ +|+.|++..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~f---G~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPY---GKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTT---SCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhc---CCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999998 9999999999999 99999999743 799999999999999999865 456666666
Q ss_pred ccCC
Q 024210 74 VKRR 77 (271)
Q Consensus 74 ~Rpr 77 (271)
++++
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 6544
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=106.24 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|..+ +..+ ||||||+|.++++|+.|++.+++..+.++++
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDA---LEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSE---EEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 689999999999999999999998 888766 3334 9999999999999999999885544444433
No 153
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=107.36 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=55.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ + .|+++.++. + ||||||+|+++++|++|++.+++..|.++.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~---~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGS---V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTC---S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCC---e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 689999999999999999999987 4 567777765 3 9999999999999999999886655544444
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=4.9e-14 Score=120.24 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+.+++++|+++|+++ |.|..|+|..++.+ ||||||+|++.++|++|++.+++..|+++++
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHT---SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 589999999999999999999999 99999999999865 9999999999999999999887665555544
No 155
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.7e-15 Score=117.16 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEE--------EEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSD--------VEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~--------v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
++|||+|||+++++++|+++|+++ |.|.. |+|..|+. + ||||||+|.+.++|++|++.+++..+.+
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 589999999999999999999999 99999 99999876 3 9999999999999999999887766666
Q ss_pred eec
Q 024210 72 SYV 74 (271)
Q Consensus 72 r~~ 74 (271)
+.+
T Consensus 85 ~~l 87 (116)
T 2lcw_A 85 NPI 87 (116)
Confidence 665
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=1e-13 Score=116.95 Aligned_cols=69 Identities=14% Similarity=0.285 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||||+|||+++++++|+++|+++ |.|.+|+|+.++. + ||||||+|.+.++|++|++.+++..+.++.+
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPF---GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 689999999999999999999999 9999999999885 3 9999999999999999999887766666655
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=8.4e-14 Score=113.58 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=64.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|..|++..++. + ||||||+|+++++|++|++.++|..+.++++
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhc---CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 689999999999999999999999 9999999999974 4 9999999999999999999998888877765
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=104.17 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=58.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEE-EecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVE-VGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~-I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+++++++|+++|+++ |.|.+|+ |+.++.+ |.|||+|.+.++|+.|++.+++..+.++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~i~~~~~~-~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQY---GVVESCEQVNTDSET-AVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHH---SCEEEEEEECCSSSS-EEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCC-CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 589999999999999999999999 9999995 8888765 349999999999999999886655544444
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.1e-13 Score=111.45 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=63.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|+|+|||+++++++|+++|+++ |.|.++++..|+. + ||||||+|.+.++|+.|++.++|..+.++++
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ceEEECCCCCCCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 589999999999999999999999 9999999999866 3 9999999999999999999998877777665
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=8.7e-14 Score=120.05 Aligned_cols=68 Identities=21% Similarity=0.427 Sum_probs=61.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+||||+|||+++++++|+++|+++ |.|.+|+|+.++.+ ||||||+|+++++|+.|++.++. .++|+++
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l 179 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDL 179 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTS---CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEEC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcC---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEE
Confidence 689999999999999999999999 99999999998887 99999999999999999987643 5555554
No 161
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=109.35 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=55.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceE----EEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTV----SDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V----~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.| ..+++. ....||||||+|.+.++|+.|++.+++..+.++++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARF---QEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHH---HHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh---CCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 689999999999999999999999 998 566655 11128999999999999999999886544444443
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=9.8e-14 Score=112.67 Aligned_cols=72 Identities=19% Similarity=0.371 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
.+|||+|||+++++++|+++|+++ |.|..|++..|+. + ||||||+|.++++|++|+++. +|+.|+++.++
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQW---GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTT---SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhC---ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 589999999999999999999999 9999999999975 4 999999999999999999832 56677777766
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
||
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=1.6e-13 Score=114.10 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHc----CCCeeEEeecc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLA----GNSYLKASYVK 75 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~----g~~~L~~r~~R 75 (271)
++|||+|||+++++++|+++|+++ |.|..|+|..|+. + ||||||+|++.++|++|++.. +|+.|.++.+.
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQY---GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 589999999999999999999999 9999999999985 4 999999999999999999863 44555666555
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
|+
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 54
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=2.8e-13 Score=111.86 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=57.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCe-EEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH-AVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGF-aFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
.|||+||++.+|+++|.++|++| |+|.+|+|..++ ||| |||+|++.++|+.|++.++|..+.+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~y---G~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTS---SCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEECCCCCCCCHHHHHHHHhCc---CCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 68999999999999999999999 999999998644 788 9999999999999999998877754
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=3.1e-13 Score=115.78 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=63.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCC-------CeeEEeeccC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGN-------SYLKASYVKR 76 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~-------~~L~~r~~Rp 76 (271)
+|||+|||+.+++++|+++|++| |+|.+|+|..++ .||||||+|++.++|+.|++.++| +.|++..+|+
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~f---G~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHH---SCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhc---CCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 69999999999999999999999 999999997543 489999999999999999999855 4455666666
Q ss_pred CCcCccc
Q 024210 77 RTPHYKL 83 (271)
Q Consensus 77 r~~~~~~ 83 (271)
+....+.
T Consensus 124 ~~l~vk~ 130 (164)
T 1sjr_A 124 TSLNVKY 130 (164)
T ss_dssp SSCCCCC
T ss_pred Ccccccc
Confidence 6433333
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=1.4e-13 Score=111.94 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
++|||+|||+++++++|+++|+++ |.|.++++..+++| ||||||+|++.++|++|++.++|..+
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSF---GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhC---CCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 589999999999999999999999 99999999999887 99999999999999999999876544
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=3.8e-13 Score=113.51 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|.+|+|..++. + ||||||+|.+.++|++|++.+++ +.|+++.+
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAF---GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 589999999999999999999999 9999999999976 3 99999999999999999998865 44555555
Q ss_pred cCC
Q 024210 75 KRR 77 (271)
Q Consensus 75 Rpr 77 (271)
+++
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 444
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.4e-14 Score=105.59 Aligned_cols=65 Identities=9% Similarity=0.139 Sum_probs=56.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCce-EEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCC-CeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGT-VSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGN-SYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~-V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~-~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |. |..+.+. .||||||+|++.++|++|++.+++ ..+.++++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~---G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDR---KLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHT---TCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHc---CCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 689999999999999999999999 88 6666653 289999999999999999998877 66666655
No 169
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=9.3e-14 Score=104.26 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=57.5
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||||||+++++++|+++|+++ .|.+|+|. ..||||||+|+++++|++|++.+++..+.++++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~----~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY----DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS----CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC----CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 4689999999999999999999998 57888884 238999999999999999999987766666655
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=2.9e-13 Score=112.72 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||+|||+++++++|+++|+++ |.|.+|++..+++ + ||||||+|.++++|+.|++.++|..+.++.+
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTB---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 689999999999999999999999 9999999999974 4 9999999999999999999886666655544
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.3e-13 Score=100.52 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=55.6
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.++|||+|+ ++++++|+++|+++ |.|.+|+|. ..||||||+|.+.++|++|++.+++..+.++++
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~---G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTT---SCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhC---CCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 468999995 89999999999999 999999994 238999999999999999999986655544444
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=7.8e-13 Score=108.00 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=61.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCe-EEEEeCCHHHHHHHHHHcCCC-------eeEEeecc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAH-AVVEFTTVEAADLIMSLAGNS-------YLKASYVK 75 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGF-aFVeF~~~e~A~~Ai~~~g~~-------~L~~r~~R 75 (271)
.|||+|||+.+++++|+++|++| |.|.+|+|.. + +|| |||+|++.++|+.|++.++|. .|++..+|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~y---G~V~~v~i~~-~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPV---GKVQRIVIFK-R--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTT---SCEEEEEEEE-S--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhc---CCEEEEEEEe-C--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 47899999999999999999999 9999999965 3 497 999999999999999998664 45555567
Q ss_pred CCCcCccc
Q 024210 76 RRTPHYKL 83 (271)
Q Consensus 76 pr~~~~~~ 83 (271)
++....+.
T Consensus 101 ~~~l~v~~ 108 (124)
T 2e5i_A 101 PTRLNVIR 108 (124)
T ss_dssp CSCCCCSS
T ss_pred CCcceeec
Confidence 66433333
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=5.2e-13 Score=118.81 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=74.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccCCCcCc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHY 81 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rpr~~~~ 81 (271)
+||||+|||+++++++|+++|+++ |+|.+|+|..++.+ ||||||+|.++++|+.|++ +++..+.+++++-.
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~---- 113 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHC---GPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS---- 113 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGG---SCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE----
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE----
Confidence 589999999999999999999999 99999999999987 9999999999999999995 68888888776321
Q ss_pred ccCCCceEEEeeeccC
Q 024210 82 KLGDDLKLNFGCQISK 97 (271)
Q Consensus 82 ~~~~~~~L~~G~~vs~ 97 (271)
.- +.-+|.+|.+...
T Consensus 114 ~~-~~~~l~v~nlp~~ 128 (292)
T 2ghp_A 114 HL-TECTLWMTNFPPS 128 (292)
T ss_dssp EC-CSCEEEEECCCTT
T ss_pred EC-CCCEEEEECCCCC
Confidence 12 5667888887543
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=4.8e-13 Score=107.79 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=62.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.+|+|+|||.++++++|+++|+++ |.|..+++..++. + ||||||+|.+.++|++|++.++|..+.++.
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CcEEECCCCCcCCHHHHHHHHHhc---CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 579999999999999999999999 9999999999875 4 899999999999999999999888776654
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=2.2e-13 Score=118.29 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=64.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceE--EEEEEecCCCC-CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTV--SDVEVGQNKGL-KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V--~~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.| .++++..++.+ +|||||+|++.++|..||..++|..|.++..
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~---G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDEL---GVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHH---TCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 579999999999999999999999 999 89999988854 7999999999999999999999999988754
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=2.3e-13 Score=114.34 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=60.9
Q ss_pred Cc-ceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 1 MA-KMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 1 M~-~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
|+ ++|||+|||+ ++++++|+++|+++ |.|.+|++..++ ||||||+|.++++|+.|++.+++..+.++++
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~---G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTT---CCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 55 7899999999 99999999999999 999999999887 8999999999999999999876554544443
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=5.1e-13 Score=108.27 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=61.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~ 71 (271)
.+|+|+|||.++++++|+++|+++ |.|..+++..++. + ||||||+|.+.++|+.|++.++|..+.+
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKY---GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcC---CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 589999999999999999999999 9999999999884 4 8999999999999999999998877755
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=111.17 Aligned_cols=69 Identities=20% Similarity=0.118 Sum_probs=56.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEE------EEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDV------EVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v------~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+|||||||+++++++|+++|+++ |.|..| .+...+.+ ||||||+|.+.++|+.|++.++|..+.++++
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRY---VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGG---CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh---CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 589999999999999999999999 988775 12212333 9999999999999999999887666655554
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.38 E-value=2e-13 Score=112.09 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=66.9
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCC-----CeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGN-----SYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~-----~~L~~r~~ 74 (271)
.++|||+|||+++++++|+++|+++ |.|..+.+...+.+ ||||||+|.++++|++|++ +++ +.|++..+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 3689999999999999999999999 88777333333333 9999999999999999995 654 44555544
Q ss_pred cCCCcCcccCCCceEEEeeecc
Q 024210 75 KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 75 Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
+++...-.- +.-+|.+|.+..
T Consensus 89 ~~~~~~~~~-~~~~l~v~nlp~ 109 (175)
T 1fje_B 89 KGRDSKKVR-AARTLLAKNLSF 109 (175)
T ss_dssp CCSSCSTTG-GGGEEEEESCCS
T ss_pred CCccccccc-cCCEEEEeCCCC
Confidence 444333333 557888888653
No 180
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=1.6e-12 Score=105.99 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=67.8
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcC-Cc-------eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTG-EG-------TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g-~G-------~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.++|||||||+++++++|+++|+++.. .| .|.++++..+ ||||||+|.++++|++|+ .+++..+.+++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 469999999999999999999999810 13 6777777543 799999999999999999 77777777776
Q ss_pred c---cCCCcCcccCCCceEEEeeecc
Q 024210 74 V---KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 74 ~---Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
+ ++....-.- +.-+|.+|.+..
T Consensus 80 i~v~~~~~~~~~~-~~~~l~v~nlp~ 104 (172)
T 2g4b_A 80 LKIRRPHDYQPLP-GAHKLFIGGLPN 104 (172)
T ss_dssp CEEECCSSCCCCT-TTTCEEEECCCT
T ss_pred eeecCCcccCCCC-CCCEEEEEcCCC
Confidence 6 222222222 456788887654
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.37 E-value=8.4e-13 Score=127.35 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||||||+.+|+++|+++|++| |.|..|+|+.|+. + +|||||+|.+.++|+.||+.++|..|.++.+
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVY---GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 589999999999999999999999 9999999999976 3 9999999999999999999997766666555
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=8.1e-13 Score=114.88 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=59.6
Q ss_pred ceEEEeCCCC-CCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFAS-PVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+ ++++++|+++|+++ |.|.+|+|..++ ||||||+|.++++|++|++.+++..+.++++
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~---G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHH---TCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 6899999999 99999999999999 999999999887 8999999999999999999876544444433
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=2.1e-12 Score=114.42 Aligned_cols=91 Identities=9% Similarity=0.057 Sum_probs=75.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC-C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG-L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV----- 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~----- 74 (271)
.+|||+|||+++++++|+++|+++ |.|..++++.|+. + ||||||+|.+.++|+.|++.+++..+.++++
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPF---GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhc---CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 589999999999999999999999 9999999999875 4 9999999999999999998886666655555
Q ss_pred cCC-CcCcccCCCceEEEeeeccC
Q 024210 75 KRR-TPHYKLGDDLKLNFGCQISK 97 (271)
Q Consensus 75 Rpr-~~~~~~~~~~~L~~G~~vs~ 97 (271)
++. ..+-.. +.-+|.++.+...
T Consensus 173 ~~~~~~~~~~-~~~~l~v~nlp~~ 195 (284)
T 3smz_A 173 DAGQLTPALL-HSRCLCVDRLPPG 195 (284)
T ss_dssp CGGGCCTTTT-SCSEEEEECCCTT
T ss_pred CCCCCCcccC-CccEEEEecCCcc
Confidence 333 223334 6778999987654
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=2.5e-12 Score=107.05 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=54.8
Q ss_pred CcceEEEeCCCCCCcHHHHHHHHhcCcCCc-----------eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 1 MAKMITLSGFASPVSPKALKDFLEEHTGEG-----------TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-----------~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
|++||||+|||+++++++|+++|+++ | .|.++++..+ ||||||+|.++++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~---g~i~g~~~~~~~~v~~~~~~~~---~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ---MRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH---HHHHTCCSSSSCSEEEEEEETT---TTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH---HhhcccccCCCCceEEeEecCC---CCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999998 5 5566655322 799999999999999999 6766656
Q ss_pred EEeec
Q 024210 70 KASYV 74 (271)
Q Consensus 70 ~~r~~ 74 (271)
.++++
T Consensus 76 ~g~~i 80 (198)
T 2yh0_A 76 QGQSL 80 (198)
T ss_dssp TTEEE
T ss_pred cCceE
Confidence 55555
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=2.2e-12 Score=101.65 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=61.8
Q ss_pred cceEEEeCCCC-----CCcHHHHHHHHhcCcCCceEEEEEEecCCC--C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 2 AKMITLSGFAS-----PVSPKALKDFLEEHTGEGTVSDVEVGQNKG--L--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 2 ~~tI~Vgnlp~-----~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~--g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
+++|+|.|+.. +.+++||++.|++| |+|.+|+|+.+++ + ||||||+|+++++|++|++.++|+.+.||
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~---G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKY---GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGG---SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhc---CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 57899999973 34789999999999 9999999999864 2 99999999999999999999998888888
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
++
T Consensus 85 ~i 86 (105)
T 2pe8_A 85 VV 86 (105)
T ss_dssp EC
T ss_pred EE
Confidence 77
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.35 E-value=1.9e-12 Score=114.64 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=60.6
Q ss_pred ceEEEeCCCCCCcHHHHH----HHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALK----DFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk----~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+ ++|+++ |.|.+|+|..+...||||||+|.+.++|+.|++.++|..+.++++
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~---G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcc---CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 689999999999999977 899999 999999998744349999999999999999999887766665555
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=2.1e-12 Score=114.92 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc-eEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec-----
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG-TVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV----- 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~----- 74 (271)
.+|||+|||+++++++|+++|+++ | .|..|+++.++.+ ||||||+|.+.++|+.|++.+++..+.++++
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDI---NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT---TCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHh---CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 589999999999999999999999 9 9999999999876 9999999999999999999887666655554
Q ss_pred cCCCc-----CcccCCCceEEEeeeccC
Q 024210 75 KRRTP-----HYKLGDDLKLNFGCQISK 97 (271)
Q Consensus 75 Rpr~~-----~~~~~~~~~L~~G~~vs~ 97 (271)
.|+.. .... +.-+|+++.+...
T Consensus 195 ~~~~~~~~~~~~~~-~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 195 NPLEKSKRTDSATL-EGREIMIRNLSTE 221 (292)
T ss_dssp CCC---------CC-TTTEEEEEEECTT
T ss_pred CCCcccccccccCC-CCceEEEECCCcc
Confidence 33321 1223 5578888886543
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=3.8e-12 Score=104.47 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++++++|+++|+++ |.|..+ +..+ ||||||+|.+.++|++|++.++|..+.++++
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~---g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDA---LEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTC---SEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 589999999999999999999998 988776 3333 9999999999999999999886555544443
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=1.8e-12 Score=103.99 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=55.2
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
+++|||||+ ++++++|+++|+++ |.|.+|+|. ..||||||+|++.++|+.|++.+++..+.++.+
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~---G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTT---CCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHcc---CCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 468999995 79999999999999 999999996 238999999999999999999886555444443
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=4.7e-12 Score=112.08 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=61.2
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE-Eeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK-ASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~-~r~~ 74 (271)
++|||+|||.++++++|+++|++| |.|.+|+|..++ +|||||+|.+.++|++|++.++|..+. ++.+
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~---G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQF---PGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhc---CCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 579999999999999999999999 999999999666 799999999999999999999877776 6554
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.30 E-value=2.3e-12 Score=114.11 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCC-cHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPV-SPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~v-ta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
++|||+|||+++ ++++|+++|+++ |.|.+|+|..++.| ||||||+|++.++|.+|++.++|..+.++++
T Consensus 185 ~~l~v~nlp~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 185 RCLCVDRLPPGFNDVDALCRALSAV---HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp SEEEEECCCTTCCCHHHHHHHTCSS---SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEecCCcccCCHHHHHHHhhCC---CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 589999999995 999999999999 99999999999887 9999999999999999999987766666655
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=3.8e-12 Score=120.14 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=56.3
Q ss_pred ceEEEeC--CCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSG--FASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgn--lp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
++||||| |++++|+++|++.|++| |+|.+|.+.. +||||||+|++.++|++||+.++|.++
T Consensus 19 ~~l~VgN~gl~~~~te~~L~~~F~~~---G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 19 QSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SEEEEETCSGGGTCCHHHHHHHHHTT---SCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 6899999 68999999999999999 9999988764 589999999999999999999988777
No 193
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.8e-12 Score=100.51 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=54.5
Q ss_pred ce-EEEeCCCCCCcHHHHH----HHHhcCcCCc-eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KM-ITLSGFASPVSPKALK----DFLEEHTGEG-TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~t-I~Vgnlp~~vta~dLk----~~Fe~~~g~G-~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.| |||+|||+++++++|+ ++|++| | +|.+| .+ |||||+|.+.++|++|++.++|.++-+|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~y---GG~Vl~V------tg-G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNC---GGKVLSI------TG-CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTT---TCCEEEC------CT-TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHc---CCeeEEE------ec-CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 45 9999999999999855 899999 6 99998 23 999999999999999999998877777766
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=6.8e-13 Score=104.18 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=58.8
Q ss_pred EeCCCCCCcHHHHHHHH------------hcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 7 LSGFASPVSPKALKDFL------------EEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 7 Vgnlp~~vta~dLk~~F------------e~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
++|+|+.+++++|++.| ++| |+|.+|+|+.++.+ ||||||+|+++++|++|++.++|+.+.||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~---G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY---GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC---CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 57788888888888777 999 99999999998876 99999999999999999999999999988
Q ss_pred ecc
Q 024210 73 YVK 75 (271)
Q Consensus 73 ~~R 75 (271)
+++
T Consensus 97 ~i~ 99 (104)
T 1jmt_A 97 PIH 99 (104)
T ss_dssp ECC
T ss_pred EEE
Confidence 764
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=4.7e-12 Score=112.31 Aligned_cols=84 Identities=12% Similarity=0.232 Sum_probs=70.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeeccCCCcCcc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYVKRRTPHYK 82 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~Rpr~~~~~ 82 (271)
.+|||||||+++|+++|+++|+++ |.|.+|++..+ ||||||+|.++++|+.|++.++|..+.+++++-. +.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~---~a 93 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERY---GEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR---FA 93 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGG---CCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE---EC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee---ec
Confidence 589999999999999999999999 99999999644 7999999999999999999988888877776322 12
Q ss_pred cCCCceEEEeeecc
Q 024210 83 LGDDLKLNFGCQIS 96 (271)
Q Consensus 83 ~~~~~~L~~G~~vs 96 (271)
- ++.+|.+|.+-.
T Consensus 94 ~-~~~~l~v~nl~~ 106 (261)
T 3sde_A 94 T-HGAALTVKNLSP 106 (261)
T ss_dssp C-CSSEEEEESCCT
T ss_pred c-cCCcccccCCCC
Confidence 2 456788888754
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=6.7e-12 Score=111.28 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=62.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCC--CCeEEEEeCCHHHHHHHHHHc-C--------CCeeEE
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGL--KAHAVVEFTTVEAADLIMSLA-G--------NSYLKA 71 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~g--RGFaFVeF~~~e~A~~Ai~~~-g--------~~~L~~ 71 (271)
.+|||+|||+.+|+++|+++|+++ |.|.+|+|+.|+.| ||||||+|.+.++|..|++.+ + ++.+.+
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQF---GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred CcccccCCCCCCCHHHHHHHHHhc---CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 589999999999999999999999 99999999999776 999999999999999999998 3 455566
Q ss_pred eec
Q 024210 72 SYV 74 (271)
Q Consensus 72 r~~ 74 (271)
.++
T Consensus 174 ~~~ 176 (261)
T 3sde_A 174 EPM 176 (261)
T ss_dssp EEC
T ss_pred eec
Confidence 655
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.26 E-value=6.9e-12 Score=105.30 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=60.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCcCCc-eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE-Eeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHTGEG-TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK-ASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~-~r~~ 74 (271)
+++|||+|||+.+++++|+++|+++ | .|..|++..+. ||||||+|++.++|+.|++.++|..+. ++++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 189 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHL 189 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT---TSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc---CCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeE
Confidence 3579999999999999999999999 9 99999997654 899999999999999999998776665 5544
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.4e-11 Score=96.60 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=58.3
Q ss_pred cceEEEeCCCCCCc-----------HHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE
Q 024210 2 AKMITLSGFASPVS-----------PKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK 70 (271)
Q Consensus 2 ~~tI~Vgnlp~~vt-----------a~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~ 70 (271)
+++|+|.|+..... +++|+++|+++ |+|.+|.| .|+..||||||+|++.++|++|++.++|+.+.
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~---G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF---GQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT---SCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc---CCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46899999955543 58999999999 99999966 56555999999999999999999999877776
Q ss_pred Eeec
Q 024210 71 ASYV 74 (271)
Q Consensus 71 ~r~~ 74 (271)
++++
T Consensus 91 gr~l 94 (112)
T 2dit_A 91 GRQI 94 (112)
T ss_dssp TEEC
T ss_pred CcEE
Confidence 6665
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=2e-11 Score=106.02 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=59.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCc-eEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeE-Eeec
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEG-TVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLK-ASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G-~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~-~r~~ 74 (271)
++|||+|||+.+++++|+++|+++ | +|..|++..+. ||||||+|++.++|++|++.++|..+. ++++
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTT---SCCEEEEEECSSS--TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CEEEEeCCCccCCHHHHHHHHHHc---CCCeeEEEEEECC--CcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 689999999999999999999999 9 99999997543 799999999999999999988766665 5544
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=9.8e-12 Score=112.04 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=57.1
Q ss_pred ceEEEeCCCCCC---------cHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPV---------SPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~v---------ta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+||||||||..+ ++++|+++|+++ |+|.+|+|+.+ ||||||+|++.++|+.|++++++..|
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f---G~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL---GDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT---SCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHcc---CCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 689999999998 799999999999 99999999964 79999999999999999999987777
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.17 E-value=4.8e-11 Score=93.85 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=60.3
Q ss_pred cceEEEeCC--CCCCc--------HHHHHHHHhcCcCCceEEEEEEecCCCC-----CCeEEEEeCCHHHHHHHHHHcCC
Q 024210 2 AKMITLSGF--ASPVS--------PKALKDFLEEHTGEGTVSDVEVGQNKGL-----KAHAVVEFTTVEAADLIMSLAGN 66 (271)
Q Consensus 2 ~~tI~Vgnl--p~~vt--------a~dLk~~Fe~~~g~G~V~~v~I~~dr~g-----RGFaFVeF~~~e~A~~Ai~~~g~ 66 (271)
++.|.+.|+ |.... .+||++.|++| |+|.+|+|+.++++ ||||||+|+++++|++|++.++|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~---G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY---GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT---SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc---CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 467888887 33333 47999999999 99999999998752 89999999999999999999999
Q ss_pred CeeEEeec
Q 024210 67 SYLKASYV 74 (271)
Q Consensus 67 ~~L~~r~~ 74 (271)
+.+.+|++
T Consensus 82 ~~f~GR~i 89 (105)
T 3v4m_A 82 RKFANRVV 89 (105)
T ss_dssp CEETTEEC
T ss_pred CEeCCCEE
Confidence 99888877
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.08 E-value=1.5e-10 Score=93.28 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=61.5
Q ss_pred cceEEEeCCCC-----CCcHHHHHHHHhcCcCCceEEEEEEecCCC-----C--CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 2 AKMITLSGFAS-----PVSPKALKDFLEEHTGEGTVSDVEVGQNKG-----L--KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 2 ~~tI~Vgnlp~-----~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-----g--RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+++|++.|+-. +-.++||++.|++| |+|.+|+|+.|+. + ||||||+|+++++|++|++.++|+.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~---G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTT---SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 46899999842 23478999999999 9999999998864 2 79999999999999999999999989
Q ss_pred EEeecc
Q 024210 70 KASYVK 75 (271)
Q Consensus 70 ~~r~~R 75 (271)
.+|.++
T Consensus 97 ~GR~i~ 102 (118)
T 3ue2_A 97 AGRKVV 102 (118)
T ss_dssp TTEECE
T ss_pred CCcEEE
Confidence 888873
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.1e-10 Score=87.40 Aligned_cols=61 Identities=30% Similarity=0.366 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc---CCCeeEEeeccCC
Q 024210 12 SPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA---GNSYLKASYVKRR 77 (271)
Q Consensus 12 ~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~---g~~~L~~r~~Rpr 77 (271)
.++++++|+++|++| |+|.+|+|+. ..||||||+|++.++|+.|++.. .++.|+++-++++
T Consensus 27 ~~~te~~L~~~F~~~---G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY---GEVLNLVLSS--KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTT---SCEEEEEEES--SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhc---CCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCC
Confidence 357899999999999 9999999982 23999999999999999999976 3577788777554
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=1.8e-09 Score=86.62 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=55.4
Q ss_pred ceEEEeCCCCCCc----------HHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEe
Q 024210 3 KMITLSGFASPVS----------PKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKAS 72 (271)
Q Consensus 3 ~tI~Vgnlp~~vt----------a~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r 72 (271)
+.|.+.|+=.... .+||++.|++| |+|.+|.|..+. .||||||+|++.++|++|++.++|+.+.||
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf---G~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH---GGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT---TCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhcc---CCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4566667643322 46889999999 999999986543 399999999999999999999999888888
Q ss_pred ec
Q 024210 73 YV 74 (271)
Q Consensus 73 ~~ 74 (271)
.+
T Consensus 84 ~i 85 (114)
T 3s6e_A 84 MI 85 (114)
T ss_dssp EC
T ss_pred EE
Confidence 77
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1e-07 Score=77.77 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=52.3
Q ss_pred cceEEEeCCCCC-CcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCC-HHHHHHHHHHc
Q 024210 2 AKMITLSGFASP-VSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTT-VEAADLIMSLA 64 (271)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~-~e~A~~Ai~~~ 64 (271)
|.-|||+|+++. ++.++|+++|++| |+|..|++..++. .|||+|.+ +++|+.|+..+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~---G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNH---GEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSS---CCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCC---EEEEEECCChHHHHHHHHHh
Confidence 346999999999 9999999999999 9999999998764 69999999 89999999988
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=9.6e-08 Score=82.35 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred CcHHHHHHHHhcCcCCceEEEEEEecCCC-----C--CCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 14 VSPKALKDFLEEHTGEGTVSDVEVGQNKG-----L--KAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 14 vta~dLk~~Fe~~~g~G~V~~v~I~~dr~-----g--RGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
-.+++|.+.|++| |+|.++.|..+.. + |||+||+|++.++|++||+.++|+.+.||++
T Consensus 141 e~~~dl~~e~~~~---G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 141 DLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp THHHHHHHHHTTT---SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred HHHHHHHHHHHcc---CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 4568999999999 9999999985443 2 8999999999999999999999999988887
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1.2e-06 Score=68.34 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=49.1
Q ss_pred ceEEEeCCCC----CCcH----HHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFAS----PVSP----KALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~----~vta----~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.||.|.-.|. +.-. .+|.+.|++| |+|..+|++.|+ +||+|.+.++|.+||+ ++|..+.+|.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF---GEVILIRFVEDK-----MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT---CCEEEEEECSSS-----EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC---CCeEEEEEecCC-----EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 4788877762 3334 6899999999 999999999765 8999999999999999 65544444433
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=1.9e-06 Score=67.80 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=51.6
Q ss_pred ceEEEeCCCCC-----CcH----HHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEee
Q 024210 3 KMITLSGFASP-----VSP----KALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASY 73 (271)
Q Consensus 3 ~tI~Vgnlp~~-----vta----~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~ 73 (271)
.||.|.-++.+ .-. .+|.+.|++| |+|..+|++.|+ +||+|.+.++|.+||+ ++|..+.+|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY---GTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH---SCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHC---CCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 48889888754 222 5799999999 999999999887 9999999999999999 7666665555
Q ss_pred c
Q 024210 74 V 74 (271)
Q Consensus 74 ~ 74 (271)
+
T Consensus 87 L 87 (95)
T 1ufw_A 87 V 87 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=7.6e-05 Score=59.52 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=61.7
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcC--cCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHH----cCCCeeEEeecc
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEH--TGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSL----AGNSYLKASYVK 75 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~--~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~----~g~~~L~~r~~R 75 (271)
+++|.|.|+|..+.++-|.-|||+. .|-|+|.+++... +=|.|+|.+.+.|++.++. +++..|.++|--
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 4789999999999999999999994 3779999999863 6799999999999999987 377888888875
Q ss_pred CC
Q 024210 76 RR 77 (271)
Q Consensus 76 pr 77 (271)
|+
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00016 Score=58.62 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=62.3
Q ss_pred cceEEEeCCCCCCcHHHHHHHHhcCc--CCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 2 AKMITLSGFASPVSPKALKDFLEEHT--GEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~--g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.+||-+-|+|-+++...++.+.+++. -.|.+..+-+..|+.| |+|+|+|..+|.+|.-+++|.++.+|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G---Aivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG---AIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE---EEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc---eEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 36899999999999999999999973 3578899999999966 9999999999999998889988887776
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.29 E-value=0.0042 Score=50.05 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=26.4
Q ss_pred EEEEecCCCC-CCeEEEEeCCHHHHHHHHHHc
Q 024210 34 DVEVGQNKGL-KAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 34 ~v~I~~dr~g-RGFaFVeF~~~e~A~~Ai~~~ 64 (271)
.++|..+... +|||||+|.++++|++|++.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhh
Confidence 4567766666 999999999999999999776
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.12 E-value=0.05 Score=44.11 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=49.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
-|.|.|+|.. ....+.+.|+++ |+|.+.+. ..+..+-.|+|+++.+|++|+.+ ||..+
T Consensus 26 wVtVFGFp~~-~~~~VL~~F~~~---G~Iv~~~~---~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 26 WVTVFGFPQA-SASYILLQFAQY---GNILKHVM---SNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp EEEEECCCGG-GHHHHHHHHHTT---SCEEEEEE---CSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred EEEEECCCHH-HHHHHHHHHHhh---CcEEEecc---CCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 5889999998 588899999998 99998886 22369999999999999999998 44444
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.29 E-value=0.049 Score=43.58 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHc-CCCeeEE
Q 024210 44 KAHAVVEFTTVEAADLIMSLA-GNSYLKA 71 (271)
Q Consensus 44 RGFaFVeF~~~e~A~~Ai~~~-g~~~L~~ 71 (271)
+|+++|+|.++++|++|++.+ ++..+.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G 41 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG 41 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC
Confidence 899999999999999999877 4444444
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.09 E-value=0.042 Score=53.66 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
++|+|. .|..+++++|.+||.++ |.|.++-.-.++ .-||.|||.+.++++.+++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~---g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF---GPINNHFFYESF--GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG---SCCCCEEEECSS--SEEEEEECC---CCHHHHSSC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc---CCcceEEEEccC--CeEEEEEeCCHHHHHHHHhcc
Confidence 579998 79999999999999999 999988777554 479999999999998876543
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=87.89 E-value=0.75 Score=36.20 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=45.0
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC-CCeeEEeec
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG-NSYLKASYV 74 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g-~~~L~~r~~ 74 (271)
|++=+||......||.+.|++| |.| .++=+. =..|||.|.+++.|..|++.+. ....+++..
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~f---ggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty 80 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAF---GNI-QISWID----DTSAFVSLSQPEQVQIAVNTSKYAESYRIQTY 80 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTT---CSC-CCEEEE----TTEEEEECSCHHHHHHHHHHHHHCCSSEEEEH
T ss_pred EEEEeCChhhhhHHHHHHhhcc---CCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 3444999999999999999999 522 222222 3689999999999999999763 333455544
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.60 E-value=0.87 Score=35.90 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=41.5
Q ss_pred EEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHc
Q 024210 5 ITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
|++=+||......||.+.|++| |. ..++=+.| ..|||.|.+++.|..|++.+
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~f---gg-v~I~WidD----TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAF---GN-IQISWIDD----TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTS---EE-EEEEEEET----TEEEEEEEEECHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhcc---CC-EEEEEEcC----CeEEEEecCHHHHHHHHHhc
Confidence 3444999999999999999999 72 22333332 68999999999999999976
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=84.00 E-value=0.83 Score=37.60 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=42.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEE-EEEec---------------CC-CCCCeEEEEeCCHHHHHHHHHHc
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSD-VEVGQ---------------NK-GLKAHAVVEFTTVEAADLIMSLA 64 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-v~I~~---------------dr-~gRGFaFVeF~~~e~A~~Ai~~~ 64 (271)
-|-|-|+|.+ .+..+-+.|+++ |+|.+ ..... +. .|...-.|+|+++.+|.+|+...
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~---G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEF---GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGG---SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred EEEEEecCHH-HHHHHHHHHHhh---ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 4789999777 566778899998 88765 22211 00 02577899999999999999984
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.98 E-value=1 Score=35.55 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=46.7
Q ss_pred ceEEEeCCCCCC-cH----HHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcCCCeeEEeec
Q 024210 3 KMITLSGFASPV-SP----KALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAGNSYLKASYV 74 (271)
Q Consensus 3 ~tI~Vgnlp~~v-ta----~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g~~~L~~r~~ 74 (271)
.|+.+.|++..+ .. ++++++|..+ +....--....= | =..|.|.++++|.+|-..+.+..+.|+++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~---~~~~tF~~lkSF--R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY---DKDTTFQYFKSF--K-RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT---CSSCEEEEETTT--T-EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh---CcCcceeecCcc--e-EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 589999998866 43 4567888888 544443333221 2 35799999999999999887777766655
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=81.40 E-value=5.7 Score=30.28 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=48.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCC----C-CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKG----L-KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~----g-RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
+|-|-+||.+.|++++.+-+... .++.-..-+..+- . -.-|+|.|.+.+++..-.+..+|+..
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~---~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPM---PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSC---CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCc---ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57799999999999999999987 5654444443332 1 46699999999999988888877644
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=52.11 E-value=33 Score=33.32 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=41.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
.++|+ +|......+|.+.|+.+ |.| +++-+. ..-|+|.|.+++.|..|++...
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~f---g~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAF---GNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGG---CCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhc---CCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 45666 99999999999999998 643 333332 3569999999999999999874
No 221
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=49.08 E-value=2.2 Score=38.51 Aligned_cols=10 Identities=60% Similarity=1.142 Sum_probs=9.2
Q ss_pred eeeeccCCCC
Q 024210 174 VREVDFTPSS 183 (271)
Q Consensus 174 iRttDFTps~ 183 (271)
||.||||||.
T Consensus 137 iRDT~FTPSH 146 (256)
T 3rfr_C 137 IRDTDFTPSH 146 (256)
T ss_dssp CCSSSCCHHH
T ss_pred eecCCCChHH
Confidence 8999999994
No 222
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=46.22 E-value=2.6 Score=38.55 Aligned_cols=10 Identities=70% Similarity=1.152 Sum_probs=9.3
Q ss_pred eeeeccCCCC
Q 024210 174 VREVDFTPSS 183 (271)
Q Consensus 174 iRttDFTps~ 183 (271)
||.||||||.
T Consensus 164 iRDT~FTPSH 173 (289)
T 1yew_C 164 VRDTDFTPSH 173 (289)
T ss_dssp CCSSSCCHHH
T ss_pred eecCCCChhH
Confidence 9999999994
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.18 E-value=25 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.028 Sum_probs=36.3
Q ss_pred eEEEeCCCC---------CCcHHHHHHHH--hcCcCCceEEEEEEecCCCC-CCeEEEEeCCHHH
Q 024210 4 MITLSGFAS---------PVSPKALKDFL--EEHTGEGTVSDVEVGQNKGL-KAHAVVEFTTVEA 56 (271)
Q Consensus 4 tI~Vgnlp~---------~vta~dLk~~F--e~~~g~G~V~~v~I~~dr~g-RGFaFVeF~~~e~ 56 (271)
++-|-|+|. ..+..+|++.| ..|. . .+++....+.| +|+|.|+|++.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~---p-~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFN---P-TRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCC---C-SEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCC---C-ceeEecccCCCCceeEEEEecCChH
Confidence 345778876 25568999988 8883 3 45677777778 9999999987544
No 224
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=41.01 E-value=2 Score=39.37 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred cCcccceeEEEEEeeCccCCCCcccccccC
Q 024210 242 VGVSKLARILNVKRHGGAHHARSNSLLTSQ 271 (271)
Q Consensus 242 ~~~~lpyeIlflv~~g~~~~~~~~~~~~~~ 271 (271)
.|..--+|.|=+.+.|..||||||||||++
T Consensus 227 ~~L~~lA~~L~v~r~g~~HqAGsDSllT~~ 256 (289)
T 1uoc_A 227 YSLTTLADELGLPRFSIFTTTGGQSLLMLL 256 (289)
T ss_dssp CSHHHHHHHTTCCCCGGGGSHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCccCcccccHHHHHHHHH
Confidence 344444555557789999999999999963
No 225
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=38.96 E-value=2.6 Score=37.87 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=19.1
Q ss_pred ceeEEEEEeeCccCCCCccccccc
Q 024210 247 LARILNVKRHGGAHHARSNSLLTS 270 (271)
Q Consensus 247 pyeIlflv~~g~~~~~~~~~~~~~ 270 (271)
-+|.|=+.+.|..|||||||+||.
T Consensus 202 la~~L~v~r~g~~HqAGsDsllT~ 225 (252)
T 2d5r_A 202 VAEQLELERIGPQHQAGSDSLLTG 225 (252)
T ss_dssp HHHHHTCCCCSSTTSHHHHHHHHH
T ss_pred HHHHcCCCccCcccchhhhHHHHH
Confidence 334444678899999999999996
No 226
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=38.94 E-value=2.6 Score=38.47 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=18.2
Q ss_pred eEEEEEeeCccCCCCcccccccC
Q 024210 249 RILNVKRHGGAHHARSNSLLTSQ 271 (271)
Q Consensus 249 eIlflv~~g~~~~~~~~~~~~~~ 271 (271)
|.|-+.+.|..|+||+|||||++
T Consensus 214 ~~L~v~r~g~~HqAGsDSllT~~ 236 (285)
T 4gmj_B 214 EQLELERIGPQHQAGSDSLLTGM 236 (285)
T ss_dssp HHTTCCCCSCTTSHHHHHHHHHH
T ss_pred HhCCCCCCCCCCcchhHHHHHHH
Confidence 33446678999999999999963
No 227
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=38.14 E-value=13 Score=28.96 Aligned_cols=50 Identities=10% Similarity=-0.108 Sum_probs=11.9
Q ss_pred eEEEEeCCHHHHHHHHHHcCCCeeEEeec--cCCCcCcccCCCceEEEeeecc
Q 024210 46 HAVVEFTTVEAADLIMSLAGNSYLKASYV--KRRTPHYKLGDDLKLNFGCQIS 96 (271)
Q Consensus 46 FaFVeF~~~e~A~~Ai~~~g~~~L~~r~~--Rpr~~~~~~~~~~~L~~G~~vs 96 (271)
++|.++++...|..|++.+++....++.. ..+.++-.- +.-+|.||.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~-~~~~l~V~nLp~ 57 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVE-GMTSLKVDNLTY 57 (135)
T ss_dssp -----------------------------CCSCCSCSSGG-GCCCEEEECCCS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCC-CCCEEEEeCCCC
Confidence 67888888888889988885433333333 222233334 567899998753
No 228
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=33.60 E-value=59 Score=25.06 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEec-CCC-C---CCeEEEEeCCHHHHHHHHHHcCCCee
Q 024210 3 KMITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQ-NKG-L---KAHAVVEFTTVEAADLIMSLAGNSYL 69 (271)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~-dr~-g---RGFaFVeF~~~e~A~~Ai~~~g~~~L 69 (271)
-+|-|-.||.+.|++++.+-++..- ++.--.-+. +.. + =.-|+|.|.+.|+...-.+..+|+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~---~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLP---AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCS---SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcC---ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3688999999999999777776652 221111111 111 1 35689999999999888888866543
No 229
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=33.32 E-value=3.7 Score=38.48 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=20.9
Q ss_pred ccceeEEEEEeeCccCCCCcccccccC
Q 024210 245 SKLARILNVKRHGGAHHARSNSLLTSQ 271 (271)
Q Consensus 245 ~lpyeIlflv~~g~~~~~~~~~~~~~~ 271 (271)
.--+|.|-+.+.|..|+||+||+||++
T Consensus 221 ~~lA~~L~v~Rig~~HqAGsDSlLT~~ 247 (333)
T 2p51_A 221 QDIADDLQIHRIGPQHQAGSDALLTAR 247 (333)
T ss_dssp HHHHHHTTCCCCSCTTSHHHHHHHHHH
T ss_pred HHHHHHcCCCccCcchhhhhHHHHHHH
Confidence 334455557788999999999999963
No 230
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.91 E-value=1.9e+02 Score=21.53 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=46.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhcCcCCceEEEEEEecCCCCCCeEEEEeCCHHHHHHHHHHcC
Q 024210 4 MITLSGFASPVSPKALKDFLEEHTGEGTVSDVEVGQNKGLKAHAVVEFTTVEAADLIMSLAG 65 (271)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~v~I~~dr~gRGFaFVeF~~~e~A~~Ai~~~g 65 (271)
+-|+--.+.+++-.++++..|+..|- .|.+|.....+.+.--|+|+.+...+|....+.+|
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~V-kV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~kig 84 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNV-KVEKVNTLITPRGEKKAYVKLKPEYSASEVAARLG 84 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTC-CEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHSS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCC-CceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhhc
Confidence 45677788999999999999986542 77888777666555569999998888877666543
Done!