Query 024211
Match_columns 271
No_of_seqs 152 out of 400
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02839 nudix hydrolase 100.0 5E-64 1.1E-68 477.3 21.8 230 36-269 21-255 (372)
2 KOG4313 Thiamine pyrophosphoki 100.0 4.7E-33 1E-37 253.7 13.6 164 93-266 11-182 (306)
3 cd03676 Nudix_hydrolase_3 Memb 99.9 5.4E-22 1.2E-26 170.0 8.8 84 185-269 1-85 (180)
4 PLN02791 Nudix hydrolase homol 99.1 1.3E-10 2.8E-15 120.8 6.8 79 187-267 2-80 (770)
5 cd02885 IPP_Isomerase Isopente 99.0 6.8E-10 1.5E-14 94.2 5.5 78 188-269 1-79 (165)
6 PLN02552 isopentenyl-diphospha 99.0 9.2E-10 2E-14 101.1 6.3 74 187-264 21-100 (247)
7 PRK03759 isopentenyl-diphospha 98.8 7.9E-09 1.7E-13 89.5 5.8 78 187-268 4-82 (184)
8 cd04692 Nudix_Hydrolase_33 Mem 98.7 2.6E-08 5.6E-13 82.2 5.6 53 217-269 2-54 (144)
9 TIGR02150 IPP_isom_1 isopenten 98.7 3.5E-08 7.6E-13 83.6 6.2 68 192-263 2-70 (158)
10 PRK15393 NUDIX hydrolase YfcD; 98.7 4.4E-08 9.5E-13 84.9 6.5 77 188-268 9-85 (180)
11 cd04697 Nudix_Hydrolase_38 Mem 97.7 6.5E-05 1.4E-09 60.6 4.9 47 219-268 2-48 (126)
12 COG1443 Idi Isopentenyldiphosp 97.7 2.6E-05 5.5E-10 69.2 2.7 77 188-268 3-81 (185)
13 cd04693 Nudix_Hydrolase_34 Mem 97.5 0.00012 2.7E-09 58.6 4.9 46 219-268 2-47 (127)
14 PRK15472 nucleoside triphospha 97.0 0.0011 2.4E-08 54.1 5.0 49 217-269 3-51 (141)
15 cd04682 Nudix_Hydrolase_23 Mem 96.8 0.0023 5.1E-08 50.9 4.9 37 232-269 12-49 (122)
16 cd03426 CoAse Coenzyme A pyrop 96.8 0.0025 5.5E-08 53.7 5.3 51 217-269 2-53 (157)
17 cd04664 Nudix_Hydrolase_7 Memb 95.1 0.044 9.6E-07 43.7 5.1 46 219-269 3-48 (129)
18 cd04694 Nudix_Hydrolase_35 Mem 95.0 0.023 4.9E-07 47.8 3.2 37 231-268 12-48 (143)
19 cd04691 Nudix_Hydrolase_32 Mem 94.8 0.042 9.2E-07 43.7 4.2 36 232-268 11-46 (117)
20 PF00293 NUDIX: NUDIX domain; 93.9 0.068 1.5E-06 41.7 3.6 49 217-269 2-50 (134)
21 cd03425 MutT_pyrophosphohydrol 93.9 0.12 2.6E-06 39.7 4.8 38 229-268 10-47 (124)
22 PRK10776 nucleoside triphospha 92.8 0.22 4.8E-06 38.9 4.9 38 229-268 13-50 (129)
23 cd04699 Nudix_Hydrolase_39 Mem 92.3 0.25 5.5E-06 38.7 4.7 37 232-269 13-49 (129)
24 cd04683 Nudix_Hydrolase_24 Mem 91.4 0.42 9.1E-06 37.4 4.9 41 224-268 5-45 (120)
25 cd03427 MTH1 MutT homolog-1 (M 89.8 0.47 1E-05 38.0 4.0 40 225-269 7-46 (137)
26 cd04681 Nudix_Hydrolase_22 Mem 89.4 0.51 1.1E-05 37.5 3.9 45 219-269 3-47 (130)
27 cd04684 Nudix_Hydrolase_25 Con 89.3 0.68 1.5E-05 36.2 4.5 35 232-269 11-45 (128)
28 KOG0142 Isopentenyl pyrophosph 89.2 0.14 2.9E-06 46.9 0.5 44 213-259 48-91 (225)
29 cd02883 Nudix_Hydrolase Nudix 87.3 0.83 1.8E-05 34.4 3.7 33 232-268 12-44 (123)
30 cd04673 Nudix_Hydrolase_15 Mem 87.0 1.3 2.7E-05 34.4 4.7 34 233-269 12-45 (122)
31 cd04678 Nudix_Hydrolase_19 Mem 86.5 0.72 1.6E-05 36.6 3.1 35 232-269 14-48 (129)
32 PRK10546 pyrimidine (deoxy)nuc 85.9 2 4.3E-05 34.3 5.4 34 233-268 16-49 (135)
33 TIGR00586 mutt mutator mutT pr 85.6 1.8 4E-05 33.9 5.0 38 229-268 13-50 (128)
34 cd04696 Nudix_Hydrolase_37 Mem 83.1 1.7 3.7E-05 34.4 3.9 32 233-269 15-46 (125)
35 cd03671 Ap4A_hydrolase_plant_l 81.7 2.6 5.7E-05 34.7 4.6 43 219-269 5-47 (147)
36 cd03673 Ap6A_hydrolase Diadeno 81.4 3.8 8.1E-05 32.0 5.2 40 223-268 7-46 (131)
37 cd04695 Nudix_Hydrolase_36 Mem 81.2 2.6 5.6E-05 33.9 4.3 37 229-269 11-47 (131)
38 cd04685 Nudix_Hydrolase_26 Mem 81.0 2.7 5.9E-05 34.6 4.5 47 219-269 2-48 (133)
39 PRK09438 nudB dihydroneopterin 80.5 3 6.5E-05 34.2 4.5 43 219-269 9-51 (148)
40 cd04676 Nudix_Hydrolase_17 Mem 79.3 1.8 3.9E-05 33.5 2.7 32 232-269 14-45 (129)
41 cd04670 Nudix_Hydrolase_12 Mem 78.8 4.1 8.9E-05 32.2 4.7 34 232-269 14-47 (127)
42 cd03430 GDPMH GDP-mannose glyc 77.9 3.8 8.2E-05 34.0 4.4 35 232-269 24-58 (144)
43 cd03424 ADPRase_NUDT5 ADP-ribo 76.9 3.3 7.2E-05 33.1 3.7 46 218-268 3-48 (137)
44 PRK15434 GDP-mannose mannosyl 76.0 4.9 0.00011 34.6 4.7 37 230-269 27-63 (159)
45 cd04677 Nudix_Hydrolase_18 Mem 75.4 3.7 8.1E-05 32.4 3.5 43 218-269 8-50 (132)
46 cd04680 Nudix_Hydrolase_21 Mem 74.8 4.2 9.2E-05 31.4 3.7 42 219-269 2-43 (120)
47 cd04688 Nudix_Hydrolase_29 Mem 72.1 6.7 0.00014 31.0 4.3 31 233-269 13-43 (126)
48 cd04679 Nudix_Hydrolase_20 Mem 71.9 3.7 8.1E-05 32.4 2.8 35 232-269 14-48 (125)
49 PRK00714 RNA pyrophosphohydrol 70.9 6.9 0.00015 33.0 4.3 43 219-269 10-52 (156)
50 cd04700 DR1025_like DR1025 fro 69.2 6.4 0.00014 32.4 3.7 33 233-268 26-58 (142)
51 cd04671 Nudix_Hydrolase_13 Mem 68.1 8.4 0.00018 31.1 4.1 36 231-269 11-46 (123)
52 cd03674 Nudix_Hydrolase_1 Memb 67.7 8.5 0.00019 31.3 4.1 42 219-268 4-45 (138)
53 PRK00241 nudC NADH pyrophospha 65.0 11 0.00025 34.8 4.8 34 232-269 143-176 (256)
54 cd04511 Nudix_Hydrolase_4 Memb 64.2 13 0.00028 29.8 4.5 35 232-269 24-58 (130)
55 cd03428 Ap4A_hydrolase_human_l 62.1 19 0.00041 28.3 5.0 38 225-269 10-47 (130)
56 cd03429 NADH_pyrophosphatase N 61.0 17 0.00037 29.4 4.7 34 232-269 12-45 (131)
57 cd03675 Nudix_Hydrolase_2 Cont 58.8 19 0.0004 28.6 4.5 40 224-269 5-44 (134)
58 PF08057 Ery_res_leader2: Eryt 43.5 11 0.00023 20.5 0.5 12 8-19 1-12 (14)
59 cd04662 Nudix_Hydrolase_5 Memb 42.9 50 0.0011 27.7 4.7 43 225-268 8-52 (126)
60 cd04667 Nudix_Hydrolase_10 Mem 42.2 26 0.00056 27.1 2.8 30 233-269 12-41 (112)
61 PRK05379 bifunctional nicotina 42.1 49 0.0011 31.7 5.2 34 233-269 215-248 (340)
62 cd03431 DNA_Glycosylase_C DNA 41.9 65 0.0014 24.3 5.0 34 232-267 14-47 (118)
63 PLN02325 nudix hydrolase 39.3 40 0.00086 28.0 3.6 34 233-269 21-54 (144)
64 cd04690 Nudix_Hydrolase_31 Mem 38.7 60 0.0013 24.9 4.4 31 233-269 13-43 (118)
65 cd04687 Nudix_Hydrolase_28 Mem 38.1 58 0.0013 25.7 4.3 33 233-269 13-45 (128)
66 cd04666 Nudix_Hydrolase_9 Memb 38.0 61 0.0013 26.1 4.4 35 229-269 12-46 (122)
67 PRK10707 putative NUDIX hydrol 37.9 35 0.00076 30.1 3.2 36 231-267 43-79 (190)
68 cd04672 Nudix_Hydrolase_14 Mem 37.5 63 0.0014 25.3 4.4 31 233-269 14-44 (123)
69 PLN02709 nudix hydrolase 28.1 1.5E+02 0.0032 27.4 5.7 51 216-267 32-86 (222)
70 cd04669 Nudix_Hydrolase_11 Mem 27.4 55 0.0012 25.9 2.5 33 232-268 12-44 (121)
71 cd04686 Nudix_Hydrolase_27 Mem 27.1 1.2E+02 0.0026 24.3 4.5 31 233-269 12-42 (131)
72 cd04689 Nudix_Hydrolase_30 Mem 25.6 1.3E+02 0.0029 23.4 4.4 31 233-269 13-43 (125)
73 cd04663 Nudix_Hydrolase_6 Memb 22.8 1.7E+02 0.0037 24.4 4.7 40 223-269 4-44 (126)
74 COG1051 ADP-ribose pyrophospha 21.7 2.1E+02 0.0046 23.9 5.1 45 220-269 11-55 (145)
75 COG2816 NPY1 NTP pyrophosphohy 20.7 1.2E+02 0.0026 29.1 3.7 31 234-268 157-187 (279)
No 1
>PLN02839 nudix hydrolase
Probab=100.00 E-value=5e-64 Score=477.35 Aligned_cols=230 Identities=51% Similarity=0.902 Sum_probs=205.8
Q ss_pred ecceeeeeeccccccceeeeeeeecc---ccCccccccccccccccccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCe
Q 024211 36 TFPVRFSVHSSAKLTTSIRSLRVDTA---SISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEF 112 (271)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~I~~CN~~~~~~~~~ 112 (271)
++|+ |...| ++.+-.|++.+++ ..+.++++|||||||+|++++||++++++++++|+++|++||++.++++.+
T Consensus 21 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~ 96 (372)
T PLN02839 21 LIPT-LRWRS---SSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEF 96 (372)
T ss_pred ccee-eEeec---ccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccc
Confidence 4777 77777 3444445555444 344788899999999999999999999999999999999999997778999
Q ss_pred eeEEECCEEEEeecHHHHHHhhcCCCeeEEeCCCC--CcccceEEEccCCCCHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 024211 113 FPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNEL 190 (271)
Q Consensus 113 ~PF~i~g~~VGyI~p~v~~~L~~~~~vF~v~~~~~--~~~g~~V~L~p~l~t~eeRT~al~~v~~~Lr~~g~l~GWRnE~ 190 (271)
.||+++|++||||+|.++++|.+|+++|.+..++. +....+|+|++.+.++++||+++++++++||++|+++|||||+
T Consensus 97 ~Pf~v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~ 176 (372)
T PLN02839 97 IPFVIEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNEL 176 (372)
T ss_pred cCeEECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCc
Confidence 99999999999999999999999999999864321 1223579999999999999999999999999999999999999
Q ss_pred eecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 191 YPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 191 y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
|+|+..+++++++.|||+|+++|||++||||||||++++|+++|||+|||++|+||||||||+|||||.+||++.+.++
T Consensus 177 y~V~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etli 255 (372)
T PLN02839 177 YPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLV 255 (372)
T ss_pred cccccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHH
Confidence 9999988889999999999999999999999999999888899999999999999999999999999999999887654
No 2
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-33 Score=253.71 Aligned_cols=164 Identities=26% Similarity=0.468 Sum_probs=133.8
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEECCEEEEeecHHHHHHhhcCCCeeEE---eCCCCCcccceEEEccCCCCHHHHHHH
Q 024211 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIY---SGNNGGRFGSHVKLNSKLKTADERTRV 169 (271)
Q Consensus 93 ~~fl~~I~~CN~~~~~~~~~~PF~i~g~~VGyI~p~v~~~L~~~~~vF~v---~~~~~~~~g~~V~L~p~l~t~eeRT~a 169 (271)
-++++..+.|.+|..-.+.-+||+.+|..||||.+-+.++|.++++.+.. ..+ +.+.. ...+++.|+..
T Consensus 11 ~~~~elmd~~~~f~~f~~g~i~~~~~~~~iG~v~~~vl~~lek~~~~~f~~~~~~~------e~~~~--~a~~f~~r~~~ 82 (306)
T KOG4313|consen 11 LNAEELLDECDSFNGFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVPG------EYIEI--NASTFEKRTDI 82 (306)
T ss_pred cCHHHHHHHHHHhcCccccceeceeccceeeeecHHHHHHHHhccchheeeeeccc------cceec--ccccchhhhhH
Confidence 45677777888885434455677787899999999999999999875422 222 22322 23578899999
Q ss_pred HHHHHHHHHHcC---CCCcccccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEee--CCeeEEEEeccCCCCC
Q 024211 170 VGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEK--DGQKFLWIGKRSQVKS 244 (271)
Q Consensus 170 l~~v~~~Lr~~g---~l~GWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~--~g~~~lWv~rRS~~K~ 244 (271)
+++++.+|+.++ ...+||||+|.|+.+ .+|+..||||++++||+.+||||+|||+++ .+.++|||+|||++|+
T Consensus 83 ~~~~~~~~~~~~~l~~a~qwrne~Y~v~~~--kkp~l~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKq 160 (306)
T KOG4313|consen 83 LAKVLEHWRHNNTFGIADQWRNELYTVYKS--KKPVLAVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQ 160 (306)
T ss_pred HHHHHHHHHHhccccchhcccceeeEEEec--CcceeEeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccc
Confidence 999999998876 347899999999943 689999999999999999999999999997 4668999999999999
Q ss_pred CCCCCchhhhcCCCCCCcchhH
Q 024211 245 TYPGMLDILAGGGLVCNSNLSL 266 (271)
Q Consensus 245 tyPG~LD~~VAGGi~agE~l~~ 266 (271)
||||||||+||||++.|..+.|
T Consensus 161 TWP~~lDN~vaGGl~~g~gI~e 182 (306)
T KOG4313|consen 161 TWPGKLDNMVAGGLSVGFGIKE 182 (306)
T ss_pred cCcchhhhhhccccccCchHHH
Confidence 9999999999999977754443
No 3
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.86 E-value=5.4e-22 Score=169.96 Aligned_cols=84 Identities=43% Similarity=0.759 Sum_probs=77.9
Q ss_pred cccccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeC-CeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcc
Q 024211 185 DIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSN 263 (271)
Q Consensus 185 GWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~-g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~ 263 (271)
|||||+++|++.++ ++++.+||++++.+|+.+++||+++|+.++ ++.+||++|||.+|.+|||+||+++|||+.+||+
T Consensus 1 ~~~~E~~~v~d~~~-~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~ 79 (180)
T cd03676 1 GWRNELYAVYGPFG-EPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG 79 (180)
T ss_pred CCcCcceeeECCCC-CEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC
Confidence 89999999999986 578999999999999999999999999863 3689999999999999999999999999999999
Q ss_pred hhHhhc
Q 024211 264 LSLLFL 269 (271)
Q Consensus 264 l~~~~~ 269 (271)
+.++.+
T Consensus 80 ~~~aA~ 85 (180)
T cd03676 80 PEETLV 85 (180)
T ss_pred HHHHHH
Confidence 988753
No 4
>PLN02791 Nudix hydrolase homolog
Probab=99.09 E-value=1.3e-10 Score=120.79 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=70.1
Q ss_pred cccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhH
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSL 266 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~ 266 (271)
.+|+++|++.+|++.-....|..++..|..+++||+..|..++ .+|++||||.+|.+|||+||++++||+.+||+..+
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~--gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~e 79 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSEST--QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL 79 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECCC--CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHH
Confidence 3699999999986554458999999999999999999998533 47999999999999999999999999999999865
Q ss_pred h
Q 024211 267 L 267 (271)
Q Consensus 267 ~ 267 (271)
+
T Consensus 80 A 80 (770)
T PLN02791 80 S 80 (770)
T ss_pred H
Confidence 4
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.97 E-value=6.8e-10 Score=94.17 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred ccceecccCCCCCeeEeeecccCCcCCce-eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhH
Q 024211 188 NELYPVASTFGSPIFFSLDRAAAPYFGIK-AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSL 266 (271)
Q Consensus 188 nE~y~V~~~~~~~~l~~iERaA~~lfGi~-t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~ 266 (271)
.|++.|||.++ .+....+|+.++..|.. +.+||+..+.. +.+++++||+..|..|||.||..++|++.+||++++
T Consensus 1 ~e~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~v~v~i~~~---~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~e 76 (165)
T cd02885 1 EELVILVDEDD-NPIGTAEKLEAHLKGTLLHRAFSVFLFNS---KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKD 76 (165)
T ss_pred CcEEEEECCCC-CCccccCHHHHhhcCCcceeEEEEEEEcC---CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHH
Confidence 48999999987 47789999999999999 99999987764 247999999999999999999999999999999998
Q ss_pred hhc
Q 024211 267 LFL 269 (271)
Q Consensus 267 ~~~ 269 (271)
+.+
T Consensus 77 aa~ 79 (165)
T cd02885 77 AAQ 79 (165)
T ss_pred HHH
Confidence 754
No 6
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.96 E-value=9.2e-10 Score=101.15 Aligned_cols=74 Identities=9% Similarity=0.019 Sum_probs=65.0
Q ss_pred cccceecccCCCCCeeEeeecccCCc------CCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCC
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAPY------FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVC 260 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~a 260 (271)
.+|.+.|+|.++ .++..+.|..++. -|+.++.||+..|.. +.+|.+||||.+|.+|||+||++++|++.+
T Consensus 21 ~~e~v~lvDe~d-~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~---~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ 96 (247)
T PLN02552 21 FEDECILVDEND-NVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNS---KYELLLQQRAATKVTFPLVWTNTCCSHPLY 96 (247)
T ss_pred hcCeEEEEcCCC-CEEeeeEHhhhhccccccCCCceEEEEEEEEEcC---CCeEEEEEecCCCCCCCcceecccCCcccc
Confidence 458999999986 6899999988875 799999999999974 248999999999999999999999999988
Q ss_pred Ccch
Q 024211 261 NSNL 264 (271)
Q Consensus 261 gE~l 264 (271)
||.+
T Consensus 97 ge~~ 100 (247)
T PLN02552 97 GQDP 100 (247)
T ss_pred cccc
Confidence 7554
No 7
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.79 E-value=7.9e-09 Score=89.51 Aligned_cols=78 Identities=19% Similarity=0.096 Sum_probs=68.9
Q ss_pred cccceecccCCCCCeeEeeecccCCc-CCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchh
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLS 265 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~l-fGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~ 265 (271)
..|+++|+|.++ +++..++|..++. .|..+++|++-.+.. +.++++.||+.+|..+||+||++++|++.+||++.
T Consensus 4 ~~E~~~~vd~~~-~~~g~~~r~~~~~~~~~~h~av~v~i~~~---~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~ 79 (184)
T PRK03759 4 ETELVVLLDEQG-VPTGTAEKAAAHTADTPLHLAFSCYLFDA---DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLE 79 (184)
T ss_pred CceeEEEECCCC-CCcccccHHHHHhcCCCeeeEEEEEEEcC---CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHH
Confidence 368999999986 5789999999995 799999999777652 34799999999999999999999999999999998
Q ss_pred Hhh
Q 024211 266 LLF 268 (271)
Q Consensus 266 ~~~ 268 (271)
++.
T Consensus 80 ~aa 82 (184)
T PRK03759 80 DAV 82 (184)
T ss_pred HHH
Confidence 875
No 8
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.69 E-value=2.6e-08 Score=82.16 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=48.7
Q ss_pred eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 217 t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.||+..+..++|+.+++++||+.+|..|||+||++++|++.+||++.++.+
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~ 54 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGI 54 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHH
Confidence 67899999998777789999999999999999999999999999999988753
No 9
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.68 E-value=3.5e-08 Score=83.55 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=59.8
Q ss_pred ecccCCCCCeeEeeecccCCc-CCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcc
Q 024211 192 PVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSN 263 (271)
Q Consensus 192 ~V~~~~~~~~l~~iERaA~~l-fGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~ 263 (271)
.|||.++ .++..++|...+. .|+.+.+|++-.+.. +.+++++||+.+|.+|||+||.+++|++.+||+
T Consensus 2 ~~~d~~~-~~~g~~~r~~~~~~~g~~h~~v~v~v~~~---~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~ 70 (158)
T TIGR02150 2 ILVDEND-NPIGTASKAEVHLQETPLHRAFSVFLFNE---EGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL 70 (158)
T ss_pred EEECCCC-CEeeeeeHHHhhhcCCCeEEEEEEEEEcC---CCeEEEEeccCCCcCCCCCccccccCCCCcccH
Confidence 5889986 5788999999996 699999999877753 347999999999999999999999999999993
No 10
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.66 E-value=4.4e-08 Score=84.94 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred ccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHh
Q 024211 188 NELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLL 267 (271)
Q Consensus 188 nE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~ 267 (271)
-|+++|||.++ .++..++|..++.-|+.+.+|++-.+. .+.++++++|+..|..|||+||.+.+|++.+||++.++
T Consensus 9 ~e~~~~~d~~~-~~~g~~~~~~~~~~~~~h~~~~v~v~~---~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eA 84 (180)
T PRK15393 9 TEWVDIVNENN-EVIAQASREQMRAQCLRHRATYIVVHD---GMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLES 84 (180)
T ss_pred ceEEEEECCCC-CEeeEEEHHHHhhCCCceEEEEEEEEC---CCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHH
Confidence 37899999986 688999999999999999999987764 23479999999999999999999999999999999887
Q ss_pred h
Q 024211 268 F 268 (271)
Q Consensus 268 ~ 268 (271)
.
T Consensus 85 A 85 (180)
T PRK15393 85 A 85 (180)
T ss_pred H
Confidence 5
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.67 E-value=6.5e-05 Score=60.61 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=39.3
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|++..+.. +.+|+++||+.+|..+||+|+...+|++.+||++.++.
T Consensus 2 ~~~v~i~~~---~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa 48 (126)
T cd04697 2 ATYIFVFNS---EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNA 48 (126)
T ss_pred eEEEEEEcC---CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHH
Confidence 456666653 34799999999999999999999999999999998764
No 12
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.67 E-value=2.6e-05 Score=69.19 Aligned_cols=77 Identities=14% Similarity=-0.045 Sum_probs=60.3
Q ss_pred ccceecccCCCCCeeEeeecccCCcCC-c-eeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchh
Q 024211 188 NELYPVASTFGSPIFFSLDRAAAPYFG-I-KAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLS 265 (271)
Q Consensus 188 nE~y~V~~~~~~~~l~~iERaA~~lfG-i-~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~ 265 (271)
+|..=+.+..+ .+...-++.+++.-- + .+++.=+-.|.. +.++-|+||+.+|.||||.|+|+|+||=.+||+.+
T Consensus 3 ~e~vill~~~d-~~~G~~~k~~~Ht~d~~~LHrAFS~~lFne---~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~ 78 (185)
T COG1443 3 TEDVILLNDDD-VPTGTAEKLAAHTGDTPRLHRAFSSFLFNE---RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNE 78 (185)
T ss_pred ceeEEEECCCC-CccccchhhhhhccccHHHHhhhheeEECC---CCceeeehhhhhcccCcccccccccCCCcCCCchH
Confidence 45555666665 577888888887743 3 366666666764 45799999999999999999999999999999988
Q ss_pred Hhh
Q 024211 266 LLF 268 (271)
Q Consensus 266 ~~~ 268 (271)
.|-
T Consensus 79 ~A~ 81 (185)
T COG1443 79 DAA 81 (185)
T ss_pred HHH
Confidence 763
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.55 E-value=0.00012 Score=58.55 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=37.5
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.|++..+.. +.+++++||+..|..+||+||..++|++..||++ ++.
T Consensus 2 ~v~v~~~~~---~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa 47 (127)
T cd04693 2 VVHVCIFNS---KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAA 47 (127)
T ss_pred eEEEEEEeC---CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHH
Confidence 355555442 2479999999999999999999999999999998 765
No 14
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=97.01 E-value=0.0011 Score=54.14 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=40.1
Q ss_pred eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 217 t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.+.|++..... + .++.+.||+..|..|||+|+.. +|++.+||++.++..
T Consensus 3 ~r~~~~~ii~~-~--~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~ 51 (141)
T PRK15472 3 QRTIVCPLIQN-D--GAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALR 51 (141)
T ss_pred ceeEEEEEEec-C--CEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHH
Confidence 35677776664 3 3799999999999999999998 589999999998763
No 15
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.77 E-value=0.0023 Score=50.91 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=33.0
Q ss_pred eEEEEeccCCC-CCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQV-KSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~-K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||++. |..|||+|+ +.+|++..||+++++..
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~-~PgG~ve~gE~~~~aa~ 49 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWD-LPGGHREGGETPLECVL 49 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEe-CCCccccCCCCHHHHHH
Confidence 48999999998 899999998 67899999999998863
No 16
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=96.76 E-value=0.0025 Score=53.70 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=42.4
Q ss_pred eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCC-cchhHhhc
Q 024211 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCN-SNLSLLFL 269 (271)
Q Consensus 217 t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~ag-E~l~~~~~ 269 (271)
..+|++-.+.. +++.++.+.||+..|..+||+|+. .+|++..| |+++++.+
T Consensus 2 ~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~l-PGG~ve~gdEs~~eaa~ 53 (157)
T cd03426 2 RAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAF-PGGKVDPGDEDPVATAL 53 (157)
T ss_pred ceEEEEEEEeC-CCceEEEEEEcccccccCCCcEEC-CCCCcCCCcCCHHHHHH
Confidence 45788888875 345799999999999999999985 68999999 99988753
No 17
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=95.11 E-value=0.044 Score=43.75 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.|.+-.|... ++.++++.||++. +||+|+ +.+|++..+|++.++.+
T Consensus 3 ~~~v~~~~~~-~~~~vLL~~r~~~---~~~~w~-~PgG~ve~~Es~~~aa~ 48 (129)
T cd04664 3 SVLVVPYRLT-GEGRVLLLRRSDK---YAGFWQ-SVTGGIEDGESPAEAAR 48 (129)
T ss_pred EEEEEEEEeC-CCCEEEEEEeCCC---CCCccc-ccCcccCCCCCHHHHHH
Confidence 4555555532 3458999999876 999999 58899999999988753
No 18
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.98 E-value=0.023 Score=47.82 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=32.6
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+.+|-+.||+..|..|||+|+.. +|++.++|++.++.
T Consensus 12 ~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa 48 (143)
T cd04694 12 DQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAG 48 (143)
T ss_pred CCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHH
Confidence 34899999999998999999876 79999999998775
No 19
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.81 E-value=0.042 Score=43.72 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=31.8
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++++.||+.++..+||+| .+.+|++..||++.++.
T Consensus 11 ~~vLL~rR~~~~~~~~g~w-~lPgG~ve~gE~~~~aa 46 (117)
T cd04691 11 DKVLLERRSLTKNADPGKL-NIPGGHIEAGESQEEAL 46 (117)
T ss_pred CEEEEEEeCCCCCCCCCeE-ECcceeecCCCCHHHHH
Confidence 4799999999888899999 56899999999998875
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=93.93 E-value=0.068 Score=41.75 Aligned_cols=49 Identities=29% Similarity=0.366 Sum_probs=39.4
Q ss_pred eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 217 t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+.+|.+-.+.. ++ ++++.||+..+.++||+|+. .+|++..+|++.++.+
T Consensus 2 ~~~v~~ii~~~-~~--~vLl~~r~~~~~~~~~~~~~-pgG~i~~~E~~~~aa~ 50 (134)
T PF00293_consen 2 RRAVGVIIFNE-DG--KVLLIKRSRSPITFPGYWEL-PGGGIEPGESPEEAAR 50 (134)
T ss_dssp EEEEEEEEEET-TT--EEEEEEESTTSSSSTTEEES-SEEEECTTSHHHHHHH
T ss_pred CCEEEEEEEeC-Cc--EEEEEEecCCCCCCCCeEec-ceeeEEcCCchhhhHH
Confidence 34666666653 23 99999999998899999965 9999999999988753
No 21
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=93.85 E-value=0.12 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.++++.||+..+ .+||+|+. .+|++..+|++.++.
T Consensus 10 ~~~~~~Ll~~r~~~~-~~~g~w~~-p~G~~~~~e~~~~~a 47 (124)
T cd03425 10 DDDGRILIAQRPAGK-HLGGLWEF-PGGKVEPGETPEQAL 47 (124)
T ss_pred CCCCEEEEEEeCCCC-CCCCeEeC-CCcccCCCCCHHHHH
Confidence 333589999998887 89999996 689999999887654
No 22
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=92.80 E-value=0.22 Score=38.86 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=29.9
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.++++.||... ..++|+|+ +.+|++..||++.++.
T Consensus 13 ~~~~~vll~rR~~~-~~~~g~w~-~PgG~~~~gE~~~~a~ 50 (129)
T PRK10776 13 NPNNEIFITRRAAD-AHMAGKWE-FPGGKIEAGETPEQAL 50 (129)
T ss_pred CCCCEEEEEEecCC-CCCCCeEE-CCceecCCCCCHHHHH
Confidence 34457999999876 56899998 5688899999976653
No 23
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.35 E-value=0.25 Score=38.67 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=31.9
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+..+..++|+|+. .+|++..||++.++..
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~-PgG~ve~gEs~~~aa~ 49 (129)
T cd04699 13 GRILILKRSKDERTAPGKWEL-PGGKVEEGETFEEALK 49 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcC-CccCccCCCCHHHHHH
Confidence 479999999998889999986 5899999999987753
No 24
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.39 E-value=0.42 Score=37.42 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=31.2
Q ss_pred EEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 224 gyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.++| ++.+.||+..+ .+||+|+. .+|++..||++.++.
T Consensus 5 ~vi~~~~--~vLL~~r~~~~-~~~~~w~l-PgG~ve~gE~~~~aa 45 (120)
T cd04683 5 VLLRRDD--EVLLQRRANTG-YMDGQWAL-PAGHLEKGEDAVTAA 45 (120)
T ss_pred EEEEECC--EEEEEEccCCC-CCCCeEeC-CccccCCCCCHHHHH
Confidence 3444444 68888998664 46999996 499999999998775
No 25
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=89.80 E-value=0.47 Score=37.97 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=31.8
Q ss_pred EEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 225 yv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+++ ++.+.+|+..+ ++|+| .+.+|++..||++.++.+
T Consensus 7 ~i~~~~--~vLL~~r~~~~--~~~~w-~~PgG~ve~gEs~~~aa~ 46 (137)
T cd03427 7 FIKDPD--KVLLLNRKKGP--GWGGW-NGPGGKVEPGETPEECAI 46 (137)
T ss_pred EEEECC--EEEEEEecCCC--CCCeE-eCCceeCCCCCCHHHHHH
Confidence 444443 79999998876 99999 577999999999988753
No 26
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=89.44 E-value=0.51 Score=37.46 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=33.6
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+|.+-.+.. + .++.+.||+..+ +||+|+. .+|++..||++.++.+
T Consensus 3 av~~~i~~~-~--~~vLL~~r~~~~--~~~~w~~-PgG~ve~gEs~~~aa~ 47 (130)
T cd04681 3 AVGVLILNE-D--GELLVVRRAREP--GKGTLDL-PGGFVDPGESAEEALI 47 (130)
T ss_pred eEEEEEEcC-C--CcEEEEEecCCC--CCCcEeC-CceeecCCCCHHHHHH
Confidence 455555542 2 378899998763 6999997 6899999999988753
No 27
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=89.26 E-value=0.68 Score=36.16 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.0
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+..+ ++|+|+. .+|++..||++.++.+
T Consensus 11 ~~vLl~~~~~~~--~~~~w~l-PgG~ve~gE~~~~aa~ 45 (128)
T cd04684 11 GKLLLIQKNGGP--YEGRWDL-PGGGIEPGESPEEALH 45 (128)
T ss_pred CEEEEEEccCCC--CCCeEEC-CCcccCCCCCHHHHHH
Confidence 478888888764 8999986 5899999999998764
No 28
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.17 E-value=0.14 Score=46.94 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCC
Q 024211 213 FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLV 259 (271)
Q Consensus 213 fGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~ 259 (271)
-|+.+++.++-.|.. +.++-+||||..|-||||.|-|++.+|-.
T Consensus 48 kglLHRaFSVFlFns---~~~lLlQqRS~~KitFP~~~TNtccSHPL 91 (225)
T KOG0142|consen 48 KGLLHRAFSVFLFNS---KNELLLQQRSDEKITFPGLWTNTCCSHPL 91 (225)
T ss_pred hhhhhheeeEEEecC---cchHHHhhhccccccccchhhhhhhcCcC
Confidence 578899999988874 45799999999999999999999999984
No 29
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=87.26 E-value=0.83 Score=34.37 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++++.||+.. ++|+|+ +.+|++..+|++..+.
T Consensus 12 ~~ill~kr~~~---~~~~~~-~p~G~~~~~e~~~~~a 44 (123)
T cd02883 12 GRVLLVRRADS---PGGLWE-LPGGGVEPGETLEEAA 44 (123)
T ss_pred CCEEEEEEcCC---CCCeEe-CCcccccCCCCHHHHH
Confidence 57999999887 889887 5689999999986543
No 30
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=86.97 E-value=1.3 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=27.7
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++-+.||+. ..++|.|+ +.+|++..+|++.++..
T Consensus 12 ~vLl~~r~~--~~~~~~w~-~PgG~ie~gE~~~~aa~ 45 (122)
T cd04673 12 RVLLVRRAN--PPDAGLWS-FPGGKVELGETLEQAAL 45 (122)
T ss_pred EEEEEEEcC--CCCCCeEE-CCCcccCCCCCHHHHHH
Confidence 677888865 35899998 67999999999998753
No 31
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=86.49 E-value=0.72 Score=36.64 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.8
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+.. .++|+|+. .+|++..||++.++..
T Consensus 14 ~~iLl~~r~~~--~~~~~w~~-PGG~ve~gEt~~~Aa~ 48 (129)
T cd04678 14 GKVLLGKRKGS--HGAGTWAL-PGGHLEFGESFEECAA 48 (129)
T ss_pred CeEEEEeccCC--CCCCeEEC-CcccccCCCCHHHHHH
Confidence 48999999865 58899988 5799999999998864
No 32
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=85.91 E-value=2 Score=34.26 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=27.6
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||..++ .++|+|.- -+|.+..||+++++.
T Consensus 16 ~vLL~~R~~~~-~~~g~w~~-PgG~ve~gE~~~~a~ 49 (135)
T PRK10546 16 KILLAQRPAHS-DQAGLWEF-AGGKVEPGESQPQAL 49 (135)
T ss_pred EEEEEEccCCC-CCCCcEEC-CcccCCCCCCHHHHH
Confidence 68999997664 69999964 588899999998664
No 33
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.58 E-value=1.8 Score=33.88 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.+++++||... ..+.|+|+. -+|++..||+.+++.
T Consensus 13 ~~~~~vLl~~R~~~-~~~~g~w~~-Pgg~ve~ge~~~~~~ 50 (128)
T TIGR00586 13 NENGEIIITRRADG-HMFAKLLEF-PGGKEEGGETPEQAV 50 (128)
T ss_pred CCCCEEEEEEEeCC-CCCCCeEEC-CCcccCCCCCHHHHH
Confidence 33347999999765 579999995 588889999987654
No 34
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=83.05 E-value=1.7 Score=34.40 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=26.0
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+.||.. |+|+|. +.+|++..||++.++..
T Consensus 15 ~iLL~r~~~----~~~~w~-lPGG~ve~gEs~~~aa~ 46 (125)
T cd04696 15 RILLVRTTK----WRGLWG-VPGGKVEWGETLEEALK 46 (125)
T ss_pred CEEEEEccC----CCCcEe-CCceeccCCCCHHHHHH
Confidence 688888752 789998 57999999999988763
No 35
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=81.73 E-value=2.6 Score=34.72 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=32.0
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+|.+-.... +.++.+.||+..+ |+|+ +.+|++.+||++.++.+
T Consensus 5 ~v~~ii~~~---~~~vLL~~r~~~~----~~W~-~PgG~~e~gE~~~~aA~ 47 (147)
T cd03671 5 NVGVVLFNE---DGKVFVGRRIDTP----GAWQ-FPQGGIDEGEDPEQAAL 47 (147)
T ss_pred eEEEEEEeC---CCEEEEEEEcCCC----CCEE-CCcCCCCCCcCHHHHHH
Confidence 444444442 2479999998876 9998 57899999999988753
No 36
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=81.38 E-value=3.8 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.019 Sum_probs=29.5
Q ss_pred EEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 223 ngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
-.+..++++.++-+.||... |.|+ +.+|++..||+++.+-
T Consensus 7 ii~~~~~~~~~vLl~~~~~~-----~~w~-~PgG~v~~gEs~~~aa 46 (131)
T cd03673 7 VVFRGSDGGIEVLLIHRPRG-----DDWS-LPKGKLEPGETPPEAA 46 (131)
T ss_pred EEEEccCCCeEEEEEEcCCC-----Cccc-CCCCccCCCCCHHHHH
Confidence 33443445578889888654 8887 5599999999998764
No 37
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=81.22 E-value=2.6 Score=33.90 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+++.++-+.||+.. ++|+|. ..+|++..||++.++.+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~-~PgG~ve~gEs~~~aa~ 47 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWC-HVAGGVEAGETAWQAAL 47 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEE-CCcccccCCCCHHHHHH
Confidence 34567888888755 899996 68999999999988764
No 38
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=81.04 E-value=2.7 Score=34.64 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=36.2
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++++-.++.+ .++-+.||.+.+..+++.|+. .+||+..||++.++..
T Consensus 2 ~~~~~i~~~~---g~vLl~r~~~~~~~~~~~w~~-PgG~ve~gE~~~~a~~ 48 (133)
T cd04685 2 AARVVLLDPD---DRVLLLRGDDPDSPGPDWWFT-PGGGVEPGESPEQAAR 48 (133)
T ss_pred eEEEEEEcCC---CeEEEEEEeCCCCCCCCEEEC-CcCCCCCCCCHHHHHH
Confidence 5666677642 368888888766578899987 7889999999998863
No 39
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=80.47 E-value=3 Score=34.17 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=29.5
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+|.+-.+.. +| ++.+.||+. .||.|+ +.+||+..||++.++..
T Consensus 9 ~v~~vi~~~-~~--~vLl~~r~~----~~~~W~-lPgG~ve~gEs~~~aa~ 51 (148)
T PRK09438 9 SVLVVIYTP-DL--GVLMLQRAD----DPDFWQ-SVTGSLEEGETPAQTAI 51 (148)
T ss_pred EEEEEEEeC-CC--eEEEEEecC----CCCcEe-CCcccCCCCCCHHHHHH
Confidence 444444442 23 466667743 379998 57999999999998753
No 40
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=79.30 E-value=1.8 Score=33.50 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=26.2
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+.. |+|+. .+|++..+|+++++..
T Consensus 14 ~~vLl~~r~~~-----~~w~l-PgG~v~~~E~~~~aa~ 45 (129)
T cd04676 14 GRVLLIRRSDN-----GLWAL-PGGAVEPGESPADTAV 45 (129)
T ss_pred CeEEEEEecCC-----CcEEC-CeeccCCCCCHHHHHH
Confidence 47889999765 99996 5899999999987653
No 41
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=78.75 E-value=4.1 Score=32.24 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=25.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++-+.||... ++|+|... +|++..||++.++..
T Consensus 14 ~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt~~~aa~ 47 (127)
T cd04670 14 NEVLVVQERNK---TPNGWKLP-GGLVDPGEDIFDGAV 47 (127)
T ss_pred CeEEEEEccCC---CCCcEECC-CccCCCCCCHHHHHH
Confidence 35555555332 89999874 899999999998753
No 42
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=77.91 E-value=3.8 Score=33.99 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=28.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++-+.||... .+||+|+ +-+|++..||++.++..
T Consensus 24 g~vLl~~R~~~--p~~g~w~-lPGG~ve~gEs~~~aa~ 58 (144)
T cd03430 24 GQYLLGKRTNR--PAQGYWF-VPGGRIRKNETLTEAFE 58 (144)
T ss_pred CeEEEEEccCC--CCCCcEE-CCCceecCCCCHHHHHH
Confidence 47888888653 4899999 56999999999998753
No 43
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=76.90 E-value=3.3 Score=33.14 Aligned_cols=46 Identities=13% Similarity=0.027 Sum_probs=31.9
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.||.+-.+..+ .++.+.||... ...+++|+ +.+|++..||++.++.
T Consensus 3 ~~v~v~~~~~~---~~iLl~~~~~~-~~~~~~w~-~PgG~ve~gEs~~~aa 48 (137)
T cd03424 3 DAVAVLPYDDD---GKVVLVRQYRP-PVGGWLLE-LPAGLIDPGEDPEEAA 48 (137)
T ss_pred CEEEEEEEcCC---CeEEEEEeeec-CCCCEEEE-eCCccCCCCCCHHHHH
Confidence 45555555532 46777666444 34788898 5789999999998775
No 44
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=76.02 E-value=4.9 Score=34.56 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=30.0
Q ss_pred CeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 230 g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.++.+.||+. ..+||+|. +-+|.+..||+++++..
T Consensus 27 ~~g~VLL~kR~~--~~~~g~W~-lPGG~VE~GEt~~~Aa~ 63 (159)
T PRK15434 27 SRGEFLLGKRTN--RPAQGYWF-VPGGRVQKDETLEAAFE 63 (159)
T ss_pred CCCEEEEEEccC--CCCCCcEE-CCceecCCCCCHHHHHH
Confidence 345899999974 35799999 66999999999998763
No 45
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=75.38 E-value=3.7 Score=32.37 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=30.6
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.+|.+-.+.. + .++.+++|+.. |+|+. .+|++..||++..+.+
T Consensus 8 ~~~~~~v~~~-~--~~vLL~~r~~~-----~~w~~-PgG~v~~gEt~~~aa~ 50 (132)
T cd04677 8 VGAGVILLNE-Q--GEVLLQKRSDT-----GDWGL-PGGAMELGESLEETAR 50 (132)
T ss_pred cceEEEEEeC-C--CCEEEEEecCC-----CcEEC-CeeecCCCCCHHHHHH
Confidence 3556555543 2 36788888754 77865 5799999999998864
No 46
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=74.81 E-value=4.2 Score=31.41 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=28.8
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
||++-.+.. +.++.+.||+..+ .|+. .+|++..||+++++..
T Consensus 2 ~~~~~i~~~---~~~vLL~~r~~~~-----~w~~-PgG~ve~gEt~~~aa~ 43 (120)
T cd04680 2 GARAVVTDA---DGRVLLVRHTYGP-----GWYL-PGGGLERGETFAEAAR 43 (120)
T ss_pred ceEEEEECC---CCeEEEEEECCCC-----cEeC-CCCcCCCCCCHHHHHH
Confidence 455555542 2367788886543 7875 4899999999988753
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=72.07 E-value=6.7 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.5
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++-+.||+. .++| .+.+|++..||++.++..
T Consensus 13 ~vLl~~~~~-----~~~w-~lPgG~ve~gEs~~~aa~ 43 (126)
T cd04688 13 KLLVQKNPD-----ETFY-RPPGGGIEFGESSEEALI 43 (126)
T ss_pred EEEEEEeCC-----CCeE-ECCCccccCCCCHHHHHH
Confidence 788888865 3555 778899999999998764
No 48
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=71.94 E-value=3.7 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.9
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+.. ..+|.|+.. +|++..||++.++.+
T Consensus 14 ~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~eaa~ 48 (125)
T cd04679 14 GKLLLVKRLRA--PEAGHWGIP-GGKVDWMEAVEDAVV 48 (125)
T ss_pred CEEEEEEecCC--CCCCeEeCC-eeeccCCCCHHHHHH
Confidence 36888888753 358999985 999999999998764
No 49
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=70.89 E-value=6.9 Score=33.01 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=31.4
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+|.+-.+.. + .++.+.||+. .||.|+.. +|++..||++.++..
T Consensus 10 ~v~~~i~~~-~--g~vLL~~r~~----~~~~w~~P-~G~~~~gE~~~~aa~ 52 (156)
T PRK00714 10 NVGIILLNR-Q--GQVFWGRRIG----QGHSWQFP-QGGIDPGETPEQAMY 52 (156)
T ss_pred eEEEEEEec-C--CEEEEEEEcC----CCCeEECC-cccCCCCcCHHHHHH
Confidence 555555543 2 3788989974 27999877 799999999988753
No 50
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=69.21 E-value=6.4 Score=32.41 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=23.6
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++-+.||... ..+|.|+.. +|++.+||+++++.
T Consensus 26 ~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa 58 (142)
T cd04700 26 DVLLVQEKGG--PKKGLWHIP-SGAVEDGEFPQDAA 58 (142)
T ss_pred cEEEEEEcCC--CCCCeEECC-ceecCCCCCHHHHH
Confidence 3444455333 368999776 79999999999875
No 51
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=68.10 E-value=8.4 Score=31.07 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=28.6
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+.++.+.||.+. .++|+|... +|++..||+++++..
T Consensus 11 ~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~ 46 (123)
T cd04671 11 QGEVLLIQEAKR--SCRGKWYLP-AGRMEPGETIEEAVK 46 (123)
T ss_pred CCEEEEEEecCC--CCCCeEECc-eeecCCCCCHHHHHH
Confidence 347889888743 479999966 799999999998753
No 52
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=67.67 E-value=8.5 Score=31.30 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=26.9
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.|+.-.+. +.+.++.+.||+. .|.| .+.+|++.+||++.++.
T Consensus 4 ~~~~~v~~--~~~~~vLLv~r~~-----~~~w-~lPgG~ve~gE~~~~aa 45 (138)
T cd03674 4 TASAFVVN--PDRGKVLLTHHRK-----LGSW-LQPGGHIDPDESLLEAA 45 (138)
T ss_pred EEEEEEEe--CCCCeEEEEEEcC-----CCcE-ECCceecCCCCCHHHHH
Confidence 44444444 2224677777754 3566 34679999999998874
No 53
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=65.00 E-value=11 Score=34.83 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=27.0
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.+|.+.||...+ +|+|. +.||++.+||+++++..
T Consensus 143 ~~iLL~rr~~~~---~g~ws-lPgG~vE~GEs~eeAa~ 176 (256)
T PRK00241 143 DEILLARHPRHR---NGVYT-VLAGFVEVGETLEQCVA 176 (256)
T ss_pred CEEEEEEccCCC---CCcEe-CcccCCCCCCCHHHHhh
Confidence 478888886542 78887 78999999999998753
No 54
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=64.17 E-value=13 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=27.7
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||... .++|.|+ +.+|++..||+++++..
T Consensus 24 ~~vLL~kr~~~--~~~g~w~-lPgG~ve~gE~~~~a~~ 58 (130)
T cd04511 24 GKVLLCRRAIE--PRHGFWT-LPAGFMENGETTEQGAL 58 (130)
T ss_pred CEEEEEEecCC--CCCCeEE-CCcccccCCCCHHHHHH
Confidence 37888888764 3789997 55999999999987753
No 55
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=62.11 E-value=19 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=27.4
Q ss_pred EEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 225 yv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
|..++++.++-+.||+. |.|+. .+|++..||++.++-+
T Consensus 10 ~~~~~~~~~vLl~~~~~------~~w~~-PgG~ve~gEs~~~aa~ 47 (130)
T cd03428 10 YRRLNNEIEYLLLQASY------GHWDF-PKGHVEPGEDDLEAAL 47 (130)
T ss_pred EEecCCCceEEEEEccC------CcCcC-CcCCCCCCCCHHHHHH
Confidence 44445566777777775 67774 4899999999987653
No 56
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=61.02 E-value=17 Score=29.38 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++-+.||+.. .+|+|+ +.+|++..||+++.+.+
T Consensus 12 ~~vLL~~r~~~---~~~~w~-lPgG~ie~gEt~~~aA~ 45 (131)
T cd03429 12 DRILLARQPRF---PPGMYS-LLAGFVEPGESLEEAVR 45 (131)
T ss_pred CEEEEEEecCC---CCCcCc-CCcccccCCCCHHHHHh
Confidence 46777777532 268887 57999999999988753
No 57
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=58.80 E-value=19 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=27.9
Q ss_pred EEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 224 gyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++...++ ++.+-||... .+++|. +.+|++..||++.++.+
T Consensus 5 ~ii~~~~--~vLlv~r~~~---~~~~w~-~PgG~ve~gEs~~~aa~ 44 (134)
T cd03675 5 AVVERDG--RFLLVEEETD---GGLVFN-QPAGHLEPGESLIEAAV 44 (134)
T ss_pred EEEEECC--EEEEEEEccC---CCceEE-CCCccCCCCCCHHHHHH
Confidence 3444444 5777777544 567775 55999999999998764
No 58
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=43.51 E-value=11 Score=20.52 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=10.4
Q ss_pred ccceeccccCCC
Q 024211 8 LTQTIRLSFPPL 19 (271)
Q Consensus 8 ~~~~~~~~~~~~ 19 (271)
.|||.|+.||.|
T Consensus 1 mthsmrlrfptl 12 (14)
T PF08057_consen 1 MTHSMRLRFPTL 12 (14)
T ss_pred Cccceeeecccc
Confidence 378999999988
No 59
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=42.88 E-value=50 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=30.8
Q ss_pred EEeeCCeeEEEEeccCCC--CCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 225 YVEKDGQKFLWIGKRSQV--KSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 225 yv~~~g~~~lWv~rRS~~--K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
|..+++.+++-+.+|... +...+|+|+.. +|++..+|++..+-
T Consensus 8 ~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA 52 (126)
T cd04662 8 YRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAA 52 (126)
T ss_pred EEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHH
Confidence 333455667888877544 44668999765 99999999987764
No 60
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=42.15 E-value=26 Score=27.11 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=23.1
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+.||.. |+|. +.+|++..||++..+..
T Consensus 12 ~vLlv~r~~------~~w~-~PgG~ve~gE~~~~aa~ 41 (112)
T cd04667 12 RVLLVRKSG------SRWA-LPGGKIEPGETPLQAAR 41 (112)
T ss_pred EEEEEEcCC------CcEe-CCCCcCCCCCCHHHHHH
Confidence 788888864 6675 45799999999987653
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=42.06 E-value=49 Score=31.72 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=27.3
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+-||+.. .++|+|. +.+|++..||++.++.+
T Consensus 215 ~VLLvrR~~~--p~~g~W~-lPGG~ve~gEt~~~Aa~ 248 (340)
T PRK05379 215 HVLLVRRRAE--PGKGLWA-LPGGFLEQDETLLDACL 248 (340)
T ss_pred EEEEEEecCC--CCCCeEE-CCcccCCCCCCHHHHHH
Confidence 6888888653 3589998 55999999999988754
No 62
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=41.89 E-value=65 Score=24.35 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=22.9
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLL 267 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~ 267 (271)
.++++.||.. +..|.|||+-- .|-+..+|+.+++
T Consensus 14 ~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~~~~~ 47 (118)
T cd03431 14 GRVLLEKRPE-KGLLAGLWEFP-SVEWEEEADGEEA 47 (118)
T ss_pred CeEEEEECCC-CCCCCcceeCC-CccccCCcCHHHH
Confidence 4799999954 58999999976 2333444554443
No 63
>PLN02325 nudix hydrolase
Probab=39.32 E-value=40 Score=27.99 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=25.0
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+|-+.||+... .-|+|... +|++..||++.++.+
T Consensus 21 ~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs~~~aa~ 54 (144)
T PLN02325 21 SVLLGRRRSSI--GDSTFALP-GGHLEFGESFEECAA 54 (144)
T ss_pred EEEEEEecCCC--CCCeEECC-ceeCCCCCCHHHHHH
Confidence 78888887532 22566654 699999999998864
No 64
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=38.71 E-value=60 Score=24.95 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=20.2
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+.||.. .|+|. +.+|++..+|++.++.+
T Consensus 13 ~vLl~~r~~-----~~~w~-~PgG~ve~~Es~~~aa~ 43 (118)
T cd04690 13 RVLLVRKRG-----TDVFY-LPGGKIEAGETPLQALI 43 (118)
T ss_pred eEEEEEECC-----CCcEE-CCCCccCCCCCHHHHHH
Confidence 556655542 23443 45699999999988753
No 65
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=38.14 E-value=58 Score=25.68 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=23.9
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++-+.||... .++.| .+.+|++..||++.++..
T Consensus 13 ~vLl~~r~~~---~~~~~-~lPGG~ve~gEt~~~aa~ 45 (128)
T cd04687 13 KILLIKHHDD---GGVWY-ILPGGGQEPGETLEDAAH 45 (128)
T ss_pred EEEEEEEEcC---CCCeE-ECCCcccCCCCCHHHHHH
Confidence 6777787543 24556 566999999999988753
No 66
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=37.99 E-value=61 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=24.4
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+++.++.+-+|... |.|+ +.+|++..+|++.++.+
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~-~PgG~ve~~E~~~~aa~ 46 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWI-VPKGGPEKDESPAEAAA 46 (122)
T ss_pred CCceEEEEEEecCC-----CeEE-CCCCCcCCCCCHHHHHH
Confidence 34456666555432 7786 77999999999988753
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=37.87 E-value=35 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=28.7
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCC-cchhHh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCN-SNLSLL 267 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~ag-E~l~~~ 267 (271)
+..+.+.||+..-+.++|.| .+-||.+.++ |++.++
T Consensus 43 ~~~vLl~~R~~~~r~~~G~~-~~PGG~~e~~de~~~~t 79 (190)
T PRK10707 43 QPTLLLTQRSIHLRKHAGQV-AFPGGAVDPTDASLIAT 79 (190)
T ss_pred CCEEEEEEeCCcccCCCCcE-EcCCcccCCCcccHHHH
Confidence 34889999998877899999 5899999875 566554
No 68
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=37.48 E-value=63 Score=25.33 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=22.0
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++-+.||.. .|+|+.. +|++..||++..+..
T Consensus 14 ~vLL~~~~~-----~~~w~~P-GG~ve~gEs~~~aa~ 44 (123)
T cd04672 14 KILLVREKS-----DGLWSLP-GGWADVGLSPAENVV 44 (123)
T ss_pred EEEEEEEcC-----CCcEeCC-ccccCCCCCHHHHHH
Confidence 555555543 5778555 799999999988754
No 69
>PLN02709 nudix hydrolase
Probab=28.08 E-value=1.5e+02 Score=27.38 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=37.2
Q ss_pred eeeeEeEEEEEee---CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCc-chhHh
Q 024211 216 KAYAVPLNGYVEK---DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNS-NLSLL 267 (271)
Q Consensus 216 ~t~GVHlngyv~~---~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE-~l~~~ 267 (271)
+..+|-+-.+... +++.++.+-+|+.+.+.+||.|- +-+|.+.++| +++.+
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~Gqia-fPGG~~e~~D~~~~~t 86 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVA-LPGGKRDEEDKDDIAT 86 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCcc-CCCcccCCCCCCHHHH
Confidence 5556777666542 46789999999999889999995 5577788875 55443
No 70
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.39 E-value=55 Score=25.88 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=24.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||.+.. .++|.. -+|++..||+++++.
T Consensus 12 ~~vLL~~r~~~~---~~~w~l-PGG~ve~gEs~~~a~ 44 (121)
T cd04669 12 GEILLIRRIKPG---KTYYVF-PGGGIEEGETPEEAA 44 (121)
T ss_pred CEEEEEEEecCC---CCcEEC-CceeccCCCCHHHHH
Confidence 367777886542 356654 679999999999876
No 71
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.12 E-value=1.2e+02 Score=24.31 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.5
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+-||.. .|.|+ +.+|++..||++.++..
T Consensus 12 ~vLLv~~~~-----~~~w~-lPgG~ve~gEt~~~aa~ 42 (131)
T cd04686 12 KILLLYTKR-----YGDYK-FPGGGVEKGEDHIEGLI 42 (131)
T ss_pred EEEEEEEcC-----CCcEE-CccccCCCCCCHHHHHH
Confidence 566666532 24675 79999999999998763
No 72
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=25.57 E-value=1.3e+02 Score=23.41 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=20.6
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++-+.||... ++|. +-+|++..+|++.++..
T Consensus 13 ~vLlv~~~~~-----~~~~-lPGG~ve~gEt~~~aa~ 43 (125)
T cd04689 13 KVLLARVIGQ-----PHYF-LPGGHVEPGETAENALR 43 (125)
T ss_pred EEEEEEecCC-----CCEE-CCCCcCCCCCCHHHHHH
Confidence 4555665331 3555 34799999999988753
No 73
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=22.80 E-value=1.7e+02 Score=24.41 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=26.4
Q ss_pred EEEEeeC-CeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 223 NGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 223 ngyv~~~-g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++|...+ ++.++-+-|... +.| .+.+|++.++|++.++..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~------~~~-~lPgG~ve~~E~~~~aa~ 44 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPL------AGF-QIVKGTVEPGETPEAAAL 44 (126)
T ss_pred EEEEEeCCceEEEEEEEcCC------CcE-ECCCccCCCCCCHHHHHH
Confidence 4455443 335666665543 335 778999999999988753
No 74
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=21.72 E-value=2.1e+02 Score=23.94 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.2
Q ss_pred EeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 220 VHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+=+...+..++ +|-+-||+.. -++|+| -+-+|.+..||+++++.+
T Consensus 11 ~~v~~~i~~~~--~iLLvrR~~~--p~~g~W-alPGG~ve~GEt~eeaa~ 55 (145)
T COG1051 11 VAVGALIVRNG--RILLVRRANE--PGAGYW-ALPGGFVEIGETLEEAAR 55 (145)
T ss_pred eeeeEEEEeCC--EEEEEEecCC--CCCCcE-eCCCccCCCCCCHHHHHH
Confidence 33444554445 6777787654 566777 567889999999999864
No 75
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.67 E-value=1.2e+02 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.2
Q ss_pred EEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 234 LWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 234 lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+.+.+|.+++ |||. .+.||=|.+|||++++.
T Consensus 157 ilLa~~~~h~---~g~y-S~LAGFVE~GETlE~AV 187 (279)
T COG2816 157 ILLARHPRHF---PGMY-SLLAGFVEPGETLEQAV 187 (279)
T ss_pred eeecCCCCCC---Ccce-eeeeecccCCccHHHHH
Confidence 8888887775 8888 56788999999999875
Done!