Query 024211
Match_columns 271
No_of_seqs 152 out of 400
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dup_A MUTT/nudix family prote 100.0 2.2E-45 7.5E-50 340.8 18.1 168 93-269 3-170 (300)
2 2pny_A Isopentenyl-diphosphate 98.9 6.4E-10 2.2E-14 99.6 5.6 74 187-264 36-120 (246)
3 2dho_A Isopentenyl-diphosphate 98.9 1.2E-09 4.1E-14 96.9 5.5 72 186-261 24-100 (235)
4 1q27_A Putative nudix hydrolas 98.5 1.6E-07 5.4E-12 76.6 7.5 78 187-268 5-82 (171)
5 1hzt_A Isopentenyl diphosphate 98.3 2.3E-07 7.7E-12 77.6 3.7 78 187-268 2-80 (190)
6 2fkb_A Putative nudix hydrolas 98.3 3.4E-07 1.2E-11 75.2 4.2 78 187-268 8-85 (180)
7 1nqz_A COA pyrophosphatase (MU 94.2 0.026 9E-07 46.6 3.0 53 214-269 32-84 (194)
8 3oga_A Nucleoside triphosphata 93.9 0.061 2.1E-06 42.9 4.6 52 214-269 24-75 (165)
9 1mut_A MUTT, nucleoside tripho 93.7 0.039 1.3E-06 41.6 3.0 35 232-268 16-50 (129)
10 3i9x_A MUTT/nudix family prote 93.1 0.11 3.8E-06 42.8 5.0 50 218-268 28-86 (187)
11 1sjy_A MUTT/nudix family prote 92.6 0.1 3.6E-06 40.8 4.0 51 214-268 10-62 (159)
12 3grn_A MUTT related protein; s 92.0 0.15 5.2E-06 40.0 4.4 37 232-269 20-56 (153)
13 2rrk_A ORF135, CTP pyrophospho 91.6 0.34 1.1E-05 36.9 5.7 34 233-268 21-54 (140)
14 3son_A Hypothetical nudix hydr 91.3 0.2 7E-06 39.0 4.3 45 218-268 6-50 (149)
15 3exq_A Nudix family hydrolase; 91.2 0.21 7E-06 40.0 4.3 37 229-268 20-56 (161)
16 3r03_A Nudix hydrolase; struct 90.8 0.22 7.7E-06 38.2 4.1 35 232-268 20-54 (144)
17 2b06_A MUTT/nudix family prote 90.8 0.26 9E-06 38.5 4.5 35 230-268 21-55 (155)
18 1ktg_A Diadenosine tetraphosph 90.5 0.43 1.5E-05 36.4 5.4 47 217-268 3-49 (138)
19 3gwy_A Putative CTP pyrophosph 90.1 0.24 8.1E-06 38.3 3.6 37 232-269 17-54 (140)
20 3hhj_A Mutator MUTT protein; n 89.8 0.38 1.3E-05 37.9 4.7 35 232-268 41-75 (158)
21 2o1c_A DATP pyrophosphohydrola 89.4 0.37 1.3E-05 37.0 4.2 43 219-268 11-53 (150)
22 1f3y_A Diadenosine 5',5'''-P1, 86.2 0.22 7.6E-06 38.9 1.2 47 214-268 11-57 (165)
23 3ees_A Probable pyrophosphohyd 85.9 0.79 2.7E-05 35.3 4.2 34 233-268 34-67 (153)
24 3q93_A 7,8-dihydro-8-oxoguanin 85.3 0.97 3.3E-05 36.9 4.7 44 220-268 26-69 (176)
25 3gg6_A Nudix motif 18, nucleos 85.3 0.83 2.8E-05 35.7 4.1 35 231-268 31-65 (156)
26 3gz5_A MUTT/nudix family prote 83.1 1.8 6.1E-05 37.6 5.7 48 218-268 23-72 (240)
27 3e57_A Uncharacterized protein 83.1 1.3 4.5E-05 38.7 4.8 58 203-263 53-112 (211)
28 1v8y_A ADP-ribose pyrophosphat 83.0 1.6 5.5E-05 34.9 5.0 44 219-268 36-79 (170)
29 4dyw_A MUTT/nudix family prote 82.6 1.5 5E-05 34.8 4.6 44 218-268 30-73 (157)
30 2fb1_A Conserved hypothetical 82.5 1.9 6.4E-05 37.1 5.5 48 218-268 14-61 (226)
31 2fml_A MUTT/nudix family prote 82.2 1.8 6.2E-05 38.3 5.4 49 217-268 39-89 (273)
32 2b0v_A Nudix hydrolase; struct 82.0 1 3.5E-05 34.8 3.4 33 233-268 20-52 (153)
33 2fvv_A Diphosphoinositol polyp 80.0 2.1 7.3E-05 35.8 4.9 35 229-268 51-85 (194)
34 2pqv_A MUTT/nudix family prote 79.6 1.2 4.2E-05 34.7 3.1 37 222-268 22-58 (154)
35 1x51_A A/G-specific adenine DN 79.5 1.5 5.1E-05 34.4 3.5 36 231-268 33-69 (155)
36 1rya_A GDP-mannose mannosyl hy 79.1 1.3 4.5E-05 34.4 3.1 34 232-268 30-63 (160)
37 2qjt_B Nicotinamide-nucleotide 78.2 2 6.7E-05 38.4 4.4 33 233-268 220-252 (352)
38 3o8s_A Nudix hydrolase, ADP-ri 78.0 2.3 7.8E-05 35.7 4.4 48 212-268 63-110 (206)
39 3id9_A MUTT/nudix family prote 78.0 2.5 8.7E-05 33.5 4.5 40 223-269 27-66 (171)
40 2pbt_A AP4A hydrolase; nudix p 77.6 3.2 0.00011 31.0 4.8 39 222-269 7-45 (134)
41 1vcd_A NDX1; nudix protein, di 77.4 2.1 7.1E-05 31.9 3.7 29 233-268 15-43 (126)
42 3shd_A Phosphatase NUDJ; nudix 76.7 1.3 4.5E-05 34.4 2.4 39 224-268 10-48 (153)
43 3eds_A MUTT/nudix family prote 75.2 1.4 4.7E-05 34.7 2.2 30 232-268 33-62 (153)
44 2yvp_A NDX2, MUTT/nudix family 73.0 0.57 1.9E-05 38.0 -0.6 45 219-268 43-87 (182)
45 2qjo_A Bifunctional NMN adenyl 72.6 4.4 0.00015 35.8 5.1 33 233-268 215-247 (341)
46 2jvb_A Protein PSU1, mRNA-deca 72.5 3.9 0.00013 31.4 4.2 31 232-268 17-47 (146)
47 2yyh_A MUTT domain, 8-OXO-DGTP 71.1 7.7 0.00026 29.4 5.5 45 219-268 11-56 (139)
48 2azw_A MUTT/nudix family prote 69.5 2.5 8.4E-05 32.3 2.4 31 231-268 30-60 (148)
49 3u53_A BIS(5'-nucleosyl)-tetra 68.4 2.9 0.0001 32.8 2.7 36 229-269 21-56 (155)
50 3h95_A Nucleoside diphosphate- 68.2 4.5 0.00015 33.4 3.9 34 232-269 39-72 (199)
51 3cng_A Nudix hydrolase; struct 67.8 5.2 0.00018 32.7 4.2 34 233-269 52-85 (189)
52 3fcm_A Hydrolase, nudix family 62.6 6.9 0.00024 32.1 4.0 34 230-269 56-89 (197)
53 1vk6_A NADH pyrophosphatase; 1 61.4 11 0.00037 33.6 5.3 32 233-268 152-183 (269)
54 3qsj_A Nudix hydrolase; struct 59.0 4.9 0.00017 35.3 2.5 32 232-264 24-55 (232)
55 2a6t_A SPAC19A8.12; alpha/beta 55.6 8.4 0.00029 34.2 3.5 32 232-268 114-145 (271)
56 1u20_A U8 snoRNA-binding prote 53.5 13 0.00045 31.2 4.3 31 231-268 55-86 (212)
57 3i7u_A AP4A hydrolase; nudix p 52.3 13 0.00043 28.8 3.7 37 224-269 9-45 (134)
58 3q1p_A Phosphohydrolase (MUTT/ 51.1 13 0.00045 30.9 3.8 43 218-268 67-109 (205)
59 3fsp_A A/G-specific adenine gl 46.9 18 0.00062 33.3 4.4 45 221-268 241-285 (369)
60 1vhz_A ADP compounds hydrolase 46.5 10 0.00034 31.6 2.4 44 219-268 51-94 (198)
61 1q33_A Pyrophosphatase, ADP-ri 42.2 33 0.0011 30.6 5.3 32 231-268 138-169 (292)
62 3f13_A Putative nudix hydrolas 41.9 21 0.00071 28.7 3.6 29 233-268 28-56 (163)
63 1g0s_A Hypothetical 23.7 kDa p 41.3 16 0.00055 30.6 2.9 47 219-268 59-109 (209)
64 1mk1_A ADPR pyrophosphatase; n 37.8 7.6 0.00026 32.3 0.3 35 232-268 55-90 (207)
65 2w4e_A MUTT/nudix family prote 37.5 23 0.00078 27.3 3.0 45 219-268 7-51 (145)
66 2dsc_A ADP-sugar pyrophosphata 35.1 15 0.0005 30.7 1.6 46 219-268 63-111 (212)
67 2jzj_A Cyanovirin-N homolog; C 24.0 25 0.00084 28.3 1.1 15 1-15 1-15 (124)
68 3k2y_A Uncharacterized protein 23.8 46 0.0016 26.2 2.6 27 108-134 46-72 (109)
No 1
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=2.2e-45 Score=340.81 Aligned_cols=168 Identities=36% Similarity=0.649 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEECCEEEEeecHHHHHHhhcCCCeeEEeCCCCCcccceEEEccCCCCHHHHHHHHHH
Q 024211 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGE 172 (271)
Q Consensus 93 ~~fl~~I~~CN~~~~~~~~~~PF~i~g~~VGyI~p~v~~~L~~~~~vF~v~~~~~~~~g~~V~L~p~l~t~eeRT~al~~ 172 (271)
|+|+++|++||+| +++.|+||+++|++||||+|.+++.|.++|++|.++. +.|+|.+.+.++++||+++++
T Consensus 3 m~~l~~i~~~~~~--~~~~~~~f~~~g~~~G~i~~~~~~~l~~~~~~~~~~~-------~~v~l~~~~~~~~~rt~~~~~ 73 (300)
T 3dup_A 3 LSFLKHVQDCNTH--DLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTR-------DAVLLSASLRTPQSRTRAVAD 73 (300)
T ss_dssp CCHHHHHHHTTCC--CCTTEEEEEETTEEEEEEEHHHHHHHTTCTTTEEECS-------SEEEECTTCCSHHHHHHHHHH
T ss_pred ccHHHHHHHHcCC--ChhhcEEEEECCEEEEeECHHHHHHHhcCCCceEeeC-------CEEEEecCCCCHHHHHHHHHH
Confidence 6899999999999 5788999999999999999999999999999998864 579999999999999999999
Q ss_pred HHHHHHHcCCCCcccccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchh
Q 024211 173 VIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDI 252 (271)
Q Consensus 173 v~~~Lr~~g~l~GWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~ 252 (271)
++++|+++|+++|||||+|+||+.+|+++++.|||+++++||+.+||||+|+|+.++++++|||+|||.+|++|||+|||
T Consensus 74 ~~~~~~~~g~~~gwr~E~~~V~~~~~~~~~~~~eR~~~~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~ 153 (300)
T 3dup_A 74 VVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDN 153 (300)
T ss_dssp HHHHHHHTTSSCCCCSCEEEECSSTTSCCCEEEEGGGTGGGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEE
T ss_pred HHHHHHHcCCCCccccccEEeecCCCCeeeEEEEhhhccccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCcccc
Confidence 99999999999999999999999998889999999999999999999999999988777899999999999999999999
Q ss_pred hhcCCCCCCcchhHhhc
Q 024211 253 LAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 253 ~VAGGi~agE~l~~~~~ 269 (271)
+||||+.+||++.++.+
T Consensus 154 svaG~i~~GEs~~eaA~ 170 (300)
T 3dup_A 154 MVAGGQPADLSLRQNLI 170 (300)
T ss_dssp SEEEECCTTSCHHHHHH
T ss_pred ccccCCCCCCCHHHHHH
Confidence 99999999999988753
No 2
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=98.94 E-value=6.4e-10 Score=99.55 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=64.8
Q ss_pred cccceecccCCCCCeeEeeecccCC-----cCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCC
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAP-----YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCN 261 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~-----lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~ag 261 (271)
++|+++|+|.++ .++..++|..++ .-|+.+.+|++-.+.. + .+|+++||+.+|.+|||+||++++||+.+|
T Consensus 36 ~~E~~~lvd~~~-~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~-~--g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G 111 (246)
T 2pny_A 36 LEEMLIVVDEND-KVIGADTKRNCHLNENIEKGLLHRAFSVVLFNT-K--NRILIQQRSDTKVTFPGYFTDSCSSHPLYN 111 (246)
T ss_dssp TTCEEEEECTTC-CEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECT-T--CCEEEEEECTTCSSSTTCBCCSEEECCBSS
T ss_pred ccceEEEEcCCC-CEEEEEEhHHhccccccCCCcEEEEEEEEEEeC-C--CEEEEEEecCCCCCCCCceEeccCceeccC
Confidence 589999999986 689999999988 4588999999877752 3 379999999999999999999999999988
Q ss_pred ------cch
Q 024211 262 ------SNL 264 (271)
Q Consensus 262 ------E~l 264 (271)
|++
T Consensus 112 ~~E~~~Et~ 120 (246)
T 2pny_A 112 PAELEEKDA 120 (246)
T ss_dssp HHHHCCGGG
T ss_pred Ccccccccc
Confidence 886
No 3
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=98.89 E-value=1.2e-09 Score=96.90 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=63.3
Q ss_pred ccccceecccCCCCCeeEeeecccCC-----cCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCC
Q 024211 186 IQNELYPVASTFGSPIFFSLDRAAAP-----YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVC 260 (271)
Q Consensus 186 WRnE~y~V~~~~~~~~l~~iERaA~~-----lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~a 260 (271)
-++|+++|+|.++ .++..++|..++ .-|+.+++|++-.+.. + .+|+++||+.+|.+|||+||++++|++.+
T Consensus 24 ~~~E~~~lvd~~~-~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~-~--g~lLLq~R~~~k~~~pg~W~~p~gG~v~~ 99 (235)
T 2dho_A 24 LLAEMCILIDEND-NKIGAETKKNCHLNENIEKGLLHRAFSVFLFNT-E--NKLLLQQRSDAKITFPGCFTNTCCSHPLS 99 (235)
T ss_dssp SSCCEEEEECTTC-CEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECT-T--CCEEEEEECTTCSSSTTCEESSEEECCBS
T ss_pred hcCcEEEEEcCCC-CEEEEEEhHHhccccccCCCceEEEEEEEEEcC-C--CEEEEEEecCcCCCCCCcEEeccCceecC
Confidence 4699999999986 689999999988 4589999999877752 2 37999999999999999999999999999
Q ss_pred C
Q 024211 261 N 261 (271)
Q Consensus 261 g 261 (271)
|
T Consensus 100 G 100 (235)
T 2dho_A 100 N 100 (235)
T ss_dssp S
T ss_pred C
Confidence 9
No 4
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=98.54 E-value=1.6e-07 Score=76.61 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=63.6
Q ss_pred cccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhH
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSL 266 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~ 266 (271)
++|+++|++.++ .++..++|..++++--.+.+|.+-.+.. +| ++++.||+..+..|||+|+++.+|++..||++.+
T Consensus 5 ~~E~~~~~d~~~-~~~g~~~r~~~~l~~~~~~~v~v~i~~~-~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~ 80 (171)
T 1q27_A 5 SDERLDLVNERD-EVVGQILRTDPALRWERVRVVNAFLRNS-QG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEE 80 (171)
T ss_dssp CSSEEEEESSSS-CEEEEEESSCTTSCTTSCEEEEEEEEET-TT--EEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHH
T ss_pred cceeeeeecCCC-CEeceEEhhhhccccccceEEEEEEECC-CC--eEEEEEecCCCCCCCCccccccCccccCCCCHHH
Confidence 799999999986 5788899999865554455555544442 33 7999999999999999999999999999999987
Q ss_pred hh
Q 024211 267 LF 268 (271)
Q Consensus 267 ~~ 268 (271)
+.
T Consensus 81 aa 82 (171)
T 1q27_A 81 AF 82 (171)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 5
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=98.34 E-value=2.3e-07 Score=77.59 Aligned_cols=78 Identities=17% Similarity=0.038 Sum_probs=42.2
Q ss_pred cccceecccCCCCCeeEeeecccCC-cCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchh
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAP-YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLS 265 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~-lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~ 265 (271)
.+|+++|+|.+| .++..++|..+. ..|+.+.+|.+-.+.. + .++++.||+..|..|||+|+...+|++..||+++
T Consensus 2 ~~E~~~v~d~~~-~~~g~~~r~~~~~~~~~~~~~v~~~i~~~-~--g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~ 77 (190)
T 1hzt_A 2 QTEHVILLNAQG-VPTGTLEKYAAHTADTRLHLAFSSWLFNA-K--GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNE 77 (190)
T ss_dssp ------------------------------CEECEEEEEECT-T--CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHH
T ss_pred CceEEEEECCCC-CEeeeEEHhhhcccCCceEEEEEEEEEcC-C--CEEEEEEeCCCCCCCCCcccCcccccCCCCCCHH
Confidence 369999999986 578899999998 8899888887755542 3 3799999999999999999998999999999998
Q ss_pred Hhh
Q 024211 266 LLF 268 (271)
Q Consensus 266 ~~~ 268 (271)
++.
T Consensus 78 ~aa 80 (190)
T 1hzt_A 78 DAV 80 (190)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 6
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=98.32 E-value=3.4e-07 Score=75.18 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=67.8
Q ss_pred cccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhH
Q 024211 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSL 266 (271)
Q Consensus 187 RnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~ 266 (271)
-+|+++|++.++ .++..++|......|+.+.++.+-.+.. +| ++.+++|+..+..+||+|+...+|++..||++.+
T Consensus 8 ~~E~~~i~d~~~-~~~g~~~r~~~~~~~~~~~~~~v~i~~~-~~--~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~ 83 (180)
T 2fkb_A 8 STEWVDIVNEEN-EVIAQASREQMRAQCLRHRATYIVVHDG-MG--KILVQRRTETKDFLPGMLDATAGGVVQADEQLLE 83 (180)
T ss_dssp CCCEEEEECTTS-CEEEEEEHHHHHHHTCCEEEEEEEEECS-SS--CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHH
T ss_pred CCeeEEEECCCC-CEeeEEEHHHhhccCceeeEEEEEEECC-CC--EEEEEECCCCCccCCCcEEeecCCCCCCCCCHHH
Confidence 489999999986 6889999999999999999887766542 33 6889999999999999999989999999999987
Q ss_pred hh
Q 024211 267 LF 268 (271)
Q Consensus 267 ~~ 268 (271)
+.
T Consensus 84 aa 85 (180)
T 2fkb_A 84 SA 85 (180)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 7
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=94.18 E-value=0.026 Score=46.62 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=33.9
Q ss_pred CceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 214 GIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 214 Gi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
|.....|.+-. .++|+.++.+.||+..+..+||+|+ +.+|++..||+++++.+
T Consensus 32 ~~~~~~~~v~i--~~~~~~~vLL~~r~~~~~~~~g~w~-lPgG~ve~gEs~~~aa~ 84 (194)
T 1nqz_A 32 HYRRAAVLVAL--TREADPRVLLTVRSSELPTHKGQIA-FPGGSLDAGETPTQAAL 84 (194)
T ss_dssp -CEEEEEEEEE--ESSSSCBBCEEEEC------CCCEE-CSEEECCTTCCHHHHHH
T ss_pred CCceEEEEEEE--ecCCCeEEEEEEecCCCCCCCCeEE-CCcccCCCCCCHHHHHH
Confidence 34444444433 3356568999999998889999998 78999999999987753
No 8
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=93.88 E-value=0.061 Score=42.92 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=33.7
Q ss_pred CceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 214 GIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 214 Gi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+.+...+-+-.+.. ++ ++.+.||+..|..+||+|+. .+|++..||++.++..
T Consensus 24 ~~~~~~~~~~ii~~-~~--~vLL~~r~~~~~~~~g~w~l-PgG~ve~gE~~~~aa~ 75 (165)
T 3oga_A 24 AMRQRTIVCPLIQN-DG--CYLLCKMADNRGVFPGQWAL-SGGGVEPGERIEEALR 75 (165)
T ss_dssp CCEEEEEEEEEEEE-TT--EEEEEEECC------CCEEC-CCEECCTTCCHHHHHH
T ss_pred CcceEEEEEEEEeC-CC--EEEEEEecCCCCCCCCeEEC-CccccCCCCCHHHHHH
Confidence 34555555544443 44 79999999998999999985 5799999999988753
No 9
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=93.74 E-value=0.039 Score=41.61 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.9
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++++.||+..+ .++|+|+ +.+|++..||++.++.
T Consensus 16 ~~vLl~~r~~~~-~~~g~w~-~PgG~~e~gE~~~~aa 50 (129)
T 1mut_A 16 NEIFITRRAADA-HMANKLE-FPGGKIEMGETPEQAV 50 (129)
T ss_dssp TEEEEEECSSCC-SSSCCEE-CCCCCSSSCSSTTHHH
T ss_pred CEEEEEEeCCCC-CCCCeEE-CCccCcCCCCCHHHHH
Confidence 379999998875 8999999 5899999999988764
No 10
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=93.09 E-value=0.11 Score=42.77 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=39.0
Q ss_pred eeEeEEEEEeeCC----eeEEEEeccCC-----CCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDG----QKFLWIGKRSQ-----VKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g----~~~lWv~rRS~-----~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+|.+-.+..+++ +.++.+.||+. .+..++|+|... +|++..||++.++.
T Consensus 28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lP-GG~ve~gEs~~~aa 86 (187)
T 3i9x_A 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVP-GGFVDENESAEQAA 86 (187)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECS-EEECCTTSCHHHHH
T ss_pred ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECC-ceeCCCCCCHHHHH
Confidence 4555555555445 67999999987 678999999765 99999999998875
No 11
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=92.63 E-value=0.1 Score=40.85 Aligned_cols=51 Identities=8% Similarity=0.033 Sum_probs=34.7
Q ss_pred CceeeeEeEEEEEeeCCeeEEEEeccCCC--CCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 214 GIKAYAVPLNGYVEKDGQKFLWIGKRSQV--KSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 214 Gi~t~GVHlngyv~~~g~~~lWv~rRS~~--K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+...+|.+-.+. .+.++.+.||+.. +..+||+|+ +.+|++..||++.++.
T Consensus 10 ~~~~~~~~~vi~~---~~~~vLl~~r~~~~~~~~~~~~w~-~PgG~ve~gE~~~~aa 62 (159)
T 1sjy_A 10 PVELRAAGVVLLN---ERGDILLVQEKGIPGHPEKAGLWH-IPSGAVEDGENPQDAA 62 (159)
T ss_dssp CCCEEEEEEEEBC---TTCCEEEEEESCC----CCCCCEE-CSEEECCTTSCHHHHH
T ss_pred CeEEEeEEEEEEe---CCCCEEEEEecccCcCCCCCCeEE-CCccccCCCCCHHHHH
Confidence 3445555544332 2236888888863 778999997 5799999999998775
No 12
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=92.05 E-value=0.15 Score=40.03 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=32.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||+..+..++|+|.. .+|++..||++.++..
T Consensus 20 ~~vLL~~r~~~~~~~~g~w~~-PgG~ve~gE~~~~aa~ 56 (153)
T 3grn_A 20 GEFLLLRRSENSRTNAGKWDL-PGGKVNPDESLKEGVA 56 (153)
T ss_dssp CCEEEEEECTTCSSSTTCEEC-SEEECCTTCCHHHHHH
T ss_pred CcEEEEEEcCCCCCCCCeEEC-ceeecCCCCCHHHHHH
Confidence 479999999988899999986 5899999999988753
No 13
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=91.56 E-value=0.34 Score=36.94 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=28.9
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++++.||+..+ .+||+|+ +.+|++..||++.++.
T Consensus 21 ~vLl~~r~~~~-~~~g~w~-lPgG~ve~gE~~~~aa 54 (140)
T 2rrk_A 21 KILLAQRPAQS-DQAGLWE-FAGGKVEPDESQRQAL 54 (140)
T ss_dssp EEEEEECCSSC-SCCCCEE-CCEEECCTTSCHHHHH
T ss_pred EEEEEEcCCCC-CCCCEEE-CCceecCCCCCHHHHH
Confidence 68999998764 6999998 5789999999998765
No 14
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=91.26 E-value=0.2 Score=39.02 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=36.8
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+|.+-.|...+++.++.+.||+.. |+|. +.+|++..||++.++.
T Consensus 6 ~~v~vvi~~~~~~~~~vLl~~r~~~-----g~w~-~PgG~ve~gE~~~~aa 50 (149)
T 3son_A 6 FQVLVIPFIKTEANYQFGVLHRTDA-----DVWQ-FVAGGGEDEEAISETA 50 (149)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESSS-----SCEE-CEEEECCTTCCHHHHH
T ss_pred eEEEEEEEEecCCCeEEEEEEEcCC-----CCEe-CCccccCCCCCHHHHH
Confidence 3677788877677788999999763 8996 7899999999998875
No 15
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=91.19 E-value=0.21 Score=40.02 Aligned_cols=37 Identities=5% Similarity=0.071 Sum_probs=30.3
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.++.+.||+ +..|+|.| .+.+|++..||++.++.
T Consensus 20 ~~~~~vLL~~r~--~~~~~g~w-~lPgG~ve~gEs~~~aa 56 (161)
T 3exq_A 20 PETQRVLVEDKV--NVPWKAGH-SFPGGHVEVGEPCATAA 56 (161)
T ss_dssp TTTCCEEEECCC--CCTTTCSB-BCCCCBCCTTSCHHHHH
T ss_pred CCCCEEEEEEcc--CCCCCCCE-EccceecCCCCCHHHHH
Confidence 333578889988 46799999 78899999999998875
No 16
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=90.81 E-value=0.22 Score=38.24 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.7
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++++.||...+ .|+|+|+. .+|++..||++.++.
T Consensus 20 ~~vLl~~r~~~~-~~~g~w~l-PgG~ve~gE~~~~aa 54 (144)
T 3r03_A 20 GRVLLAQRPPGK-SLAGLWEF-PGGKLEPGETPEAAL 54 (144)
T ss_dssp SCEEEEECCTTS-SSTTCEEC-SEEECCTTCCHHHHH
T ss_pred CEEEEEEeCCCC-CCCCcEEC-CCcEecCCCCHHHHH
Confidence 479999998775 49999986 789999999998875
No 17
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=90.78 E-value=0.26 Score=38.52 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=25.2
Q ss_pred CeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 230 g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++..+.+.+|+..+ ||| |. +.+|++..||++.++.
T Consensus 21 ~~~~vLl~~r~~~~--~~g-w~-lPgG~ve~gE~~~~aa 55 (155)
T 2b06_A 21 QRVVMQYRAPENNR--WSG-YA-FPGGHVENDEAFAESV 55 (155)
T ss_dssp TEEEEEEEC-------CCE-EE-CCCCBCCTTSCHHHHH
T ss_pred CeEEEEEEECCCCC--CCC-Ee-ccceecCCCCCHHHHH
Confidence 34569999998875 899 84 7999999999998875
No 18
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=90.54 E-value=0.43 Score=36.35 Aligned_cols=47 Identities=15% Similarity=-0.036 Sum_probs=35.9
Q ss_pred eeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 217 t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
..+|.+-.|..++++.++.+.||+. .||+|+ +.+|++..||++.++.
T Consensus 3 ~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~-~PgG~ve~gE~~~~aa 49 (138)
T 1ktg_A 3 VKAAGLVIYRKLAGKIEFLLLQASY----PPHHWT-PPKGHVDPGEDEWQAA 49 (138)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEESS----TTCCEE-SSEEECCTTCCHHHHH
T ss_pred eEEEEEEEEEecCCCcEEEEEEccC----CCCcEe-CCccccCCCCCHHHHH
Confidence 3466666676656678899999872 378997 4899999999998764
No 19
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=90.11 E-value=0.24 Score=38.34 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=24.4
Q ss_pred eEEEEeccCCCCCC-CCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKST-YPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~t-yPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++++.||+..+.+ +||+|.. .+|++..||++.++..
T Consensus 17 ~~vLL~~r~~~~~~~~~g~w~l-PgG~ve~gE~~~~aa~ 54 (140)
T 3gwy_A 17 EKYLCVQRGQTKFSYTSFRYEF-PGGKVEEGESLQEALQ 54 (140)
T ss_dssp TEEEEEEC---------CCEEC-SEEECCTTCCHHHHHH
T ss_pred CEEEEEEecCCCCCCCCCeEEC-CCccCCCCCCHHHHHH
Confidence 37999999888654 9999975 5899999999988753
No 20
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=89.82 E-value=0.38 Score=37.91 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=29.8
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||...+ .|+|+|.. .+|++..||++.++.
T Consensus 41 ~~vLL~~r~~~~-~~~g~w~~-PgG~ve~gE~~~~aa 75 (158)
T 3hhj_A 41 NRVLLTQRPEGK-SLAGLWEF-PGGKVEQGETPEASL 75 (158)
T ss_dssp SEEEEEECCCTT-SCCCCCBC-CEEECCTTCCHHHHH
T ss_pred CEEEEEEeCCCC-CCCCEEEC-CceeecCCCCHHHHH
Confidence 479999998774 59999986 789999999998875
No 21
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=89.43 E-value=0.37 Score=36.95 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=31.1
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|++-.+.. .+.++.+.||+.. ||+|+ +.+|++..||++.++.
T Consensus 11 ~v~~~i~~~--~~~~vLl~~r~~~----~g~w~-~PgG~ve~gE~~~~aa 53 (150)
T 2o1c_A 11 SILVVIYAQ--DTKRVLMLQRRDD----PDFWQ-SVTGSVEEGETAPQAA 53 (150)
T ss_dssp EEEEEEEET--TTCEEEEEECSSS----TTCEE-SEEEECCTTCCHHHHH
T ss_pred EEEEEEEeC--CCCEEEEEEecCC----CCceE-CCccccCCCCCHHHHH
Confidence 555544443 2236788888765 89998 5889999999998765
No 22
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=86.19 E-value=0.22 Score=38.94 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=33.8
Q ss_pred CceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 214 GIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 214 Gi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
|..+.+|.+-.+.. + .++.+.||+ .+||+|+. .+|++..||++.++.
T Consensus 11 ~~~~~~v~~~i~~~-~--~~vLl~~r~----~~~g~w~~-PgG~ve~gE~~~~aa 57 (165)
T 1f3y_A 11 EGYRRNVGICLMNN-D--KKIFAASRL----DIPDAWQM-PQGGIDEGEDPRNAA 57 (165)
T ss_dssp SSCCCEEEEEEECT-T--SCEEEEEET----TEEEEEEC-CEEECCTTCCHHHHH
T ss_pred cceeeeEEEEEECC-C--CcEEEEecC----CCCCcEEC-CeeccCCCCCHHHHH
Confidence 44556666655532 3 368888886 36899985 569999999998764
No 23
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=85.94 E-value=0.79 Score=35.26 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=29.3
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||... ..++|+|+. .+|++..||++.++.
T Consensus 34 ~vLl~~r~~~-~~~~g~w~~-PgG~ve~gE~~~~aa 67 (153)
T 3ees_A 34 KILVGQRPEN-NSLAGQWEF-PGGKIENGETPEEAL 67 (153)
T ss_dssp EEEEEECCTT-STTTTCEEC-SEEECCTTCCHHHHH
T ss_pred EEEEEEeCCC-CCCCCeEEC-CceeeCCCCCHHHHH
Confidence 7999999877 579999985 789999999998775
No 24
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=85.32 E-value=0.97 Score=36.87 Aligned_cols=44 Identities=11% Similarity=-0.073 Sum_probs=31.8
Q ss_pred EeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 220 VHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+-.-+++.+++ ++.+.||... .++|+| .+.+|++..||+++++.
T Consensus 26 ~~~~~vi~~~~--~vLL~~r~~~--~~~g~W-~lPgG~ve~gEs~~~aa 69 (176)
T 3q93_A 26 LYTLVLVLQPQ--RVLLGMKKRG--FGAGRW-NGFGGKVQEGETIEDGA 69 (176)
T ss_dssp EEEEEEEECSS--EEEEEEECSS--TTTTSE-ECEEEECCTTSCHHHHH
T ss_pred EEEEEEEEeCC--EEEEEEEcCC--CCCCeE-ECceecCCCCCCHHHHH
Confidence 33334444344 7888888543 589999 67799999999998875
No 25
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=85.26 E-value=0.83 Score=35.74 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=28.6
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+.++.+.||+.. .++|+|+ +.+|++..||++.++.
T Consensus 31 ~~~vLl~~r~~~--~~~~~w~-~PgG~ve~gE~~~~aa 65 (156)
T 3gg6_A 31 QDEVLLIQEAKR--ECRGSWY-LPAGRMEPGETIVEAL 65 (156)
T ss_dssp TSEEEEEECCCT--TSTTCEE-CSEEECCTTCCHHHHH
T ss_pred CCEEEEEEecCC--CCCCEEE-CCeeeccCCCCHHHHH
Confidence 357888888743 4999998 6699999999998775
No 26
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=83.08 E-value=1.8 Score=37.65 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=37.4
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCC--CcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVC--NSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~a--gE~l~~~~ 268 (271)
.+|-+-.+..++++.++.+.||+. ..++|+|. +.+|++.+ ||++.++.
T Consensus 23 v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~-lPGG~ve~~~gEs~~~AA 72 (240)
T 3gz5_A 23 LTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWG-LPGGFIDETCDESLEQTV 72 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEECCS--SSSTTCEE-CSEEECCTTTCSBHHHHH
T ss_pred cEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEE-CCccccCCCCCcCHHHHH
Confidence 455555555557788999999984 46899996 67999999 99998875
No 27
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=83.05 E-value=1.3 Score=38.67 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=34.9
Q ss_pred EeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCC--CCCCCchhhhcCCCCCCcc
Q 024211 203 FSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKS--TYPGMLDILAGGGLVCNSN 263 (271)
Q Consensus 203 ~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~--tyPG~LD~~VAGGi~agE~ 263 (271)
..++|+..-.=+.....+++.... ++| ++.+.+|+.++. .++|+|..-++|++.+||+
T Consensus 53 ~~~~Rg~~e~d~~~~q~i~~~II~-~~g--rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs 112 (211)
T 3e57_A 53 FFRERDEAEYDETTKQVIPYVVIM-DGD--RVLITKRTTKQSEKRLHNLYSLGIGGHVREGDG 112 (211)
T ss_dssp EEEEHHHHTTCTTEEEEEEEEEEE-ETT--EEEEEEC------------CBSSEECCCBGGGC
T ss_pred EEEEccccccCCcccceEEEEEEE-ECC--EEEEEEECCCCCcccccCCcccccceEEeCCCC
Confidence 456666665555556666665544 344 688889988764 4999999999999999998
No 28
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=82.98 E-value=1.6 Score=34.91 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=31.3
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.+. +| ++.+-||... ..+||+|+ +.+|++..||++.++.
T Consensus 36 ~v~vii~~--~~--~vLL~~~~r~-~~~~~~w~-lPgG~ve~gEs~~~aa 79 (170)
T 1v8y_A 36 AVAVIALR--EG--RMLFVRQMRP-AVGLAPLE-IPAGLIEPGEDPLEAA 79 (170)
T ss_dssp EEEEEEEE--TT--EEEEEECCBT-TTTBCCBB-CSEEECCTTCCHHHHH
T ss_pred eEEEEEEE--CC--EEEEEEEEeC-CCCCCEEE-CCccccCCCCCHHHHH
Confidence 45544444 44 5667666544 37899997 6799999999998875
No 29
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=82.60 E-value=1.5 Score=34.76 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=32.5
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+|.+-.+. ++ ++.+.||+... ++|+|+ +.+|++..||++.++.
T Consensus 30 ~~v~~vi~~--~~--~vLL~~r~~~~--~~~~w~-lPgG~ve~gEs~~~aa 73 (157)
T 4dyw_A 30 VGCGAAIVR--DG--RILLIKRKRAP--EAGCWG-LPGGKVDWLEPVERAV 73 (157)
T ss_dssp EEEEEEEEE--TT--EEEEEEECSSS--STTCEE-CCEEECCTTCCHHHHH
T ss_pred eEEEEEEEE--CC--EEEEEEecCCC--CCCEEE-CCcccCCCCCCHHHHH
Confidence 344444443 44 78888998653 999998 5689999999998875
No 30
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=82.53 E-value=1.9 Score=37.10 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=37.0
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+|.+-.+..++++.++.+.||... .++|+|. +-+|++..||++.++.
T Consensus 14 v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~-lPGG~ve~gEs~~~Aa 61 (226)
T 2fb1_A 14 LGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWS-LMGGFVQKDESVDDAA 61 (226)
T ss_dssp EEEEEEEEEEETTEEEEEEEECSSS--SSTTCEE-CEEEECCTTSCHHHHH
T ss_pred EEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEE-CCeeccCCCCCHHHHH
Confidence 4555555555577788999999763 6789996 5799999999998875
No 31
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=82.20 E-value=1.8 Score=38.34 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=38.4
Q ss_pred eeeEeEEEEEeeCC--eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 217 AYAVPLNGYVEKDG--QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 217 t~GVHlngyv~~~g--~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
..+|++-.+..+++ +.++.+.||... .++|+|.. .+|++..||++.++.
T Consensus 39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~l-PGG~ve~gEs~~~AA 89 (273)
T 2fml_A 39 SLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWAL-PGGFVNRNESTEDSV 89 (273)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEEC-CEEECCTTSCHHHHH
T ss_pred ceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEEC-CccCCCCCcCHHHHH
Confidence 34667767766555 788999999765 58999975 599999999998875
No 32
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=81.96 E-value=1 Score=34.77 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=27.6
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||+..+. +|+|+.. +|++..||++.++.
T Consensus 20 ~vLl~~r~~~~~--~~~w~lP-gG~ve~gE~~~~aa 52 (153)
T 2b0v_A 20 KYLLVEEIPRGT--AIKLNQP-AGHLEPGESIIQAC 52 (153)
T ss_dssp EEEEEEECSSSS--CCEEECS-EEECCTTSCHHHHH
T ss_pred EEEEEEEcCCCC--CCeEECC-CcCcCCCCCHHHHH
Confidence 688888887654 9999875 99999999998775
No 33
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=79.95 E-value=2.1 Score=35.77 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+++.++.+.||+. +||+|. +.+|++..||+++++.
T Consensus 51 ~~~~~vLLv~r~~----~~g~W~-lPgG~ve~gEt~~eaa 85 (194)
T 2fvv_A 51 ESEEEVLLVSSSR----HPDRWI-VPGGGMEPEEEPSVAA 85 (194)
T ss_dssp TTCCEEEEEECSS----CTTSEE-CSEEECCTTCCHHHHH
T ss_pred CCCCEEEEEEEeC----CCCcEE-CCCCcCCCCcCHHHHH
Confidence 4456888888864 479998 5799999999998875
No 34
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=79.61 E-value=1.2 Score=34.66 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred EEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 222 LNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 222 lngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
..+++.+++ ++.+.|| +|+|. +.+|++..||++.++.
T Consensus 22 ~~~ii~~~~--~vLl~~r-------~~~w~-lPgG~ve~gE~~~~aa 58 (154)
T 2pqv_A 22 ATALIVQNH--KLLVTKD-------KGKYY-TIGGAIQVNESTEDAV 58 (154)
T ss_dssp EEECCEETT--EEEEEEE-------TTEEE-CEEEECBTTCCHHHHH
T ss_pred EEEEEEECC--EEEEEec-------CCeEE-CcccCcCCCCCHHHHH
Confidence 334444444 6888888 78997 5899999999998775
No 35
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=79.52 E-value=1.5 Score=34.40 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=29.0
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchh-Hhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLS-LLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~-~~~ 268 (271)
+.++++.||... ..++|+|+ +-+|++..||++. ++.
T Consensus 33 ~~~vLl~~R~~~-~~~~g~w~-~PgG~~e~gE~~~~~a~ 69 (155)
T 1x51_A 33 GAQILLVQRPNS-GLLAGLWE-FPSVTWEPSEQLQRKAL 69 (155)
T ss_dssp SEEEEEEECCCC-STTCSCEE-CCEEECCSSHHHHHHHH
T ss_pred CCEEEEEECCCC-CCCCceec-CCccccCCCCCHHHHHH
Confidence 468999999775 58999999 5788999999985 543
No 36
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=79.11 E-value=1.3 Score=34.44 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||+.. .++|+|+.. +|++..||++.++.
T Consensus 30 ~~vLl~~r~~~--~~~g~w~~P-gG~ve~gE~~~~aa 63 (160)
T 1rya_A 30 GEFLLGKRTNR--PAQGYWFVP-GGRVQKDETLEAAF 63 (160)
T ss_dssp SCEEEEEECSS--SSTTSEECC-EEECCTTCCHHHHH
T ss_pred CEEEEEeccCC--CCCCEEECC-ccccCCCCCHHHHH
Confidence 46889899863 479999764 99999999998764
No 37
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=78.22 E-value=2 Score=38.43 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=27.4
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||...+ ++|+|. +.+|++..||+++++.
T Consensus 220 ~vLL~~r~~~~--~~g~w~-lPgG~ve~gEt~~~aa 252 (352)
T 2qjt_B 220 HILMVQRKAHP--GKDLWA-LPGGFLECDETIAQAI 252 (352)
T ss_dssp EEEEEEESSSS--STTCEE-CSEEECCTTSCHHHHH
T ss_pred EEEEEEEcCCC--CCCeEE-CCCCcCCCCCCHHHHH
Confidence 68888887653 689996 6899999999998875
No 38
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=78.01 E-value=2.3 Score=35.67 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.9
Q ss_pred cCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 212 YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 212 lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.-|..+-.+.+.+.+.++| ++.+.||+ +|+|. +-+|++..||++.++.
T Consensus 63 ~~~y~~~~~~v~~vv~~~~--~vLLvrr~------~g~w~-lPgG~ve~gEs~~~aa 110 (206)
T 3o8s_A 63 ETGYQTPKLDTRAAIFQED--KILLVQEN------DGLWS-LPGGWCDVDQSVKDNV 110 (206)
T ss_dssp -----CCEEEEEEEEEETT--EEEEEECT------TSCEE-CSEEECCTTSCHHHHH
T ss_pred ccCCCCCCccEEEEEEECC--EEEEEEec------CCeEE-CCeeccCCCCCHHHHH
Confidence 3444555566767776654 78888887 77884 6689999999998775
No 39
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=77.98 E-value=2.5 Score=33.50 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred EEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 223 ngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.+.+.++| ++.+.||... +|+| .+.+|++..||++.++..
T Consensus 27 ~~ii~~~~--~vLL~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~ 66 (171)
T 3id9_A 27 TGILIEDE--KVLLVKQKVA----NRDW-SLPGGRVENGETLEEAMI 66 (171)
T ss_dssp EEEEEETT--EEEEEECSST----TCCE-ECCEEECCTTCCHHHHHH
T ss_pred EEEEEECC--EEEEEEEECC----CCeE-ECCCccCCCCCCHHHHHH
Confidence 34444454 6888888763 8999 567999999999987753
No 40
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=77.59 E-value=3.2 Score=31.05 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred EEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 222 LNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 222 lngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+.+++.+++ ++.+.||.. |+| .+.+|++..||++.++.+
T Consensus 7 ~~~vi~~~~--~vLl~~r~~------~~w-~~PgG~ve~gE~~~~aa~ 45 (134)
T 2pbt_A 7 AGGVLFKDG--EVLLIKTPS------NVW-SFPKGNIEPGEKPEETAV 45 (134)
T ss_dssp EEEEEEETT--EEEEEECTT------SCE-ECCEEECCTTCCHHHHHH
T ss_pred EEEEEEECC--EEEEEEeCC------CcE-ECCccccCCCCCHHHHHH
Confidence 344454454 788888865 888 467899999999987753
No 41
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=77.39 E-value=2.1 Score=31.87 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=24.1
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++++.||+. |+|+ +.+|++..||++.++.
T Consensus 15 ~vLl~~r~~------g~w~-~PgG~ve~gE~~~~aa 43 (126)
T 1vcd_A 15 EVLLLRDRM------GFWV-FPKGHPEPGESLEEAA 43 (126)
T ss_dssp CEEEEECTT------SCEE-CCEECCCTTCCHHHHH
T ss_pred EEEEEEECC------CCcc-CCcCcCCCCCCHHHHH
Confidence 788989875 7886 4699999999998765
No 42
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=76.67 E-value=1.3 Score=34.37 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=29.3
Q ss_pred EEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 224 gyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+...++| ++.+.||+ ..++|+|. +.+|++..||++.++.
T Consensus 10 ~ii~~~~--~vLl~~r~---~~~~~~w~-~PgG~ve~gEs~~~aa 48 (153)
T 3shd_A 10 CVVHAEG--KFLVVEET---INGKALWN-QPAGHLEADETLVEAA 48 (153)
T ss_dssp EEEEETT--EEEEEEEE---ETTEEEEE-CSEEECCTTCCHHHHH
T ss_pred EEEEeCC--EEEEEEec---CCCCCCEE-CCeEEeCCCCCHHHHH
Confidence 3343344 78888887 45688897 5689999999998875
No 43
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=75.23 E-value=1.4 Score=34.71 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=22.5
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||+ +|+|. +.+|++..||++.++.
T Consensus 33 ~~vLL~~r~------~~~w~-lPgG~ve~gEs~~~aa 62 (153)
T 3eds_A 33 GEILFQYPG------GEYWS-LPAGAIELGETPEEAV 62 (153)
T ss_dssp CCEEEECC---------CBB-CSEEECCTTSCHHHHH
T ss_pred CeEEEEEcC------CCcEE-CCccccCCCCCHHHHH
Confidence 468888887 88886 5689999999998775
No 44
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=72.98 E-value=0.57 Score=37.97 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=32.9
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.+.. +| ++.+.||... ..++|+|+ +.+|++..||++.++.
T Consensus 43 ~v~v~i~~~-~~--~vLL~~r~~~-~~~~~~w~-~PgG~ve~gEs~~~aa 87 (182)
T 2yvp_A 43 ASFVLPVTE-RG--TALLVRQYRH-PTGKFLLE-VPAGKVDEGETPEAAA 87 (182)
T ss_dssp EEEEEEBCT-TS--EEEEEEEEEG-GGTEEEEE-CCEEECCTTCCHHHHH
T ss_pred EEEEEEEcC-CC--EEEEEEeccC-CCCCcEEE-eccccCCCCcCHHHHH
Confidence 444444432 33 6888888765 57899998 6789999999998875
No 45
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=72.56 E-value=4.4 Score=35.78 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.1
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||+.. .++|+|. +.+|++..||+++++.
T Consensus 215 ~vLL~~r~~~--~~~g~w~-lPgG~ve~gE~~~~aa 247 (341)
T 2qjo_A 215 HVLMVRRQAK--PGLGLIA-LPGGFIKQNETLVEGM 247 (341)
T ss_dssp EEEEEECCSS--SSTTCEE-CSEEECCTTSCHHHHH
T ss_pred EEEEEEecCC--CCCCeEE-CCCCcCCCCCCHHHHH
Confidence 6888888754 4599995 6899999999998775
No 46
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=72.54 E-value=3.9 Score=31.35 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=24.8
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||.. +|+|+ +.+|++..||++.++.
T Consensus 17 ~~vLl~~r~~-----~g~w~-~PgG~ve~gEs~~~aa 47 (146)
T 2jvb_A 17 SKILLVQGTE-----SDSWS-FPRGKISKDENDIDCC 47 (146)
T ss_dssp SEEEEECCSS-----SSCCB-CCEECCCSSSCHHHHH
T ss_pred CEEEEEEEcC-----CCcEE-CCcccCCCCCCHHHHH
Confidence 4788888753 68996 5889999999998775
No 47
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=71.07 E-value=7.7 Score=29.44 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=29.8
Q ss_pred eEeEEEEEeeCCeeE-EEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKF-LWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~-lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.+..++++.+ +.+.||+.. |+.|. +.+|++..||++.++.
T Consensus 11 ~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~-~PgG~ve~gE~~~~aa 56 (139)
T 2yyh_A 11 ATDVIIRLWDGENFKGIVLIERKYP----PVGLA-LPGGFVEVGERVEEAA 56 (139)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECSS----SCSEE-CCEEECCTTCCHHHHH
T ss_pred EEEEEEEEEcCCCcEEEEEEEecCC----CCcEE-CccccCCCCCCHHHHH
Confidence 444444443333322 888888653 56685 6899999999998775
No 48
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=69.55 E-value=2.5 Score=32.30 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=24.8
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+.++++.||. +|+|+ +.+|++..||++.++.
T Consensus 30 ~~~vLl~~r~------~g~w~-~PgG~ve~gE~~~~aa 60 (148)
T 2azw_A 30 NNTMVLVQAP------NGAYF-LPGGEIEGTETKEEAI 60 (148)
T ss_dssp GTEEEEEECT------TSCEE-CSEEECCTTCCHHHHH
T ss_pred CCeEEEEEcC------CCCEe-CCCcccCCCCCHHHHH
Confidence 4578888883 38897 7889999999998764
No 49
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=68.37 E-value=2.9 Score=32.82 Aligned_cols=36 Identities=8% Similarity=-0.145 Sum_probs=28.1
Q ss_pred CCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 229 ~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
+++.++.+-||+.. ||.|+ +.+|++..||++.++..
T Consensus 21 n~~~e~LL~~r~~~----~~~W~-lPgG~ve~gEt~~~aa~ 56 (155)
T 3u53_A 21 NNAIEFLLLQASDG----IHHWT-PPKGHVEPGEDDLETAL 56 (155)
T ss_dssp SCSEEEEEEEESSS----SCCEE-CSEEECCSSCCHHHHHH
T ss_pred CCCcEEEEEEecCC----CCCEE-CCeeeccCCCCHHHHHH
Confidence 56677778888754 57886 57899999999998753
No 50
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=68.21 E-value=4.5 Score=33.43 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=26.0
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
.++.+.||.. .++|+|.. .+|++..||++.++.+
T Consensus 39 ~~vLL~~r~~---~~~g~w~l-PGG~ve~gEs~~~aA~ 72 (199)
T 3h95_A 39 RKILVVQDRN---KLKNMWKF-PGGLSEPEEDIGDTAV 72 (199)
T ss_dssp TEEEEEEESS---SSTTSBBC-CEEECCTTCCHHHHHH
T ss_pred CEEEEEEEcC---CCCCCEEC-CccccCCCCCHHHHHH
Confidence 4677777754 36899965 5999999999988753
No 51
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=67.76 E-value=5.2 Score=32.72 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=27.5
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.+.||...+ ++|+|+ +.+|++..||++.++.+
T Consensus 52 ~vLL~~r~~~~--~~g~w~-lPgG~ve~gEs~~~aa~ 85 (189)
T 3cng_A 52 KVLLCKRAIAP--YRGKWT-LPAGFMENNETLVQGAA 85 (189)
T ss_dssp EEEEEEESSSS--STTCEE-CSEEECCTTCCHHHHHH
T ss_pred EEEEEEccCCC--CCCeEE-CceeeccCCCCHHHHHH
Confidence 78888887753 499995 67999999999988753
No 52
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=62.60 E-value=6.9 Score=32.13 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=25.8
Q ss_pred CeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 230 g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
++.++.+.||. ++|+|... +|++..||++.++..
T Consensus 56 ~~~~vLL~~r~-----~~g~w~lP-gG~ve~gEs~~eaa~ 89 (197)
T 3fcm_A 56 ERNKFLMIHHN-----IYNSWAWT-GGHSDNEKDQLKVAI 89 (197)
T ss_dssp TSCEEEEEEET-----TTTEEECE-EEECTTCCBHHHHHH
T ss_pred CCCEEEEEEec-----CCCCEECC-ccccCCCCCHHHHHH
Confidence 33477777765 57899765 899999999988753
No 53
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=61.40 E-value=11 Score=33.60 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=26.9
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||+..+ +|+|+. .||.+..||+++++.
T Consensus 152 ~vLL~rr~~~~---~g~w~l-PgG~vE~GEt~eeAa 183 (269)
T 1vk6_A 152 SILLAQHTRHR---NGVHTV-LAGFVEVGETLEQAV 183 (269)
T ss_dssp EEEEEEETTTC---SSCCBC-EEEECCTTCCHHHHH
T ss_pred EEEEEEecCCC---CCcEEC-CcCcCCCCCCHHHHH
Confidence 78899987653 799976 899999999998875
No 54
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=58.95 E-value=4.9 Score=35.27 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=28.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcch
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNL 264 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l 264 (271)
.++.+.||+.++..+||+|.- -+|++.++|+-
T Consensus 24 ~~vLl~~R~~~~~~~~g~~~f-PGG~vd~~d~~ 55 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFLPGFVAF-PGGAADPSDAE 55 (232)
T ss_dssp EEEEEEEECTTCSSSTTCEEC-SEEECCHHHHH
T ss_pred eEEEEEEccCCCCCCCCcEEC-CceeEecCCCC
Confidence 799999999998889999985 58999988873
No 55
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=55.62 E-value=8.4 Score=34.18 Aligned_cols=32 Identities=6% Similarity=-0.217 Sum_probs=25.5
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.++.+.||.. +||+| .+.+|++..||++.++.
T Consensus 114 ~~vLLv~r~~----~~g~W-~lPgG~ve~gEs~~eAA 145 (271)
T 2a6t_A 114 QQCVLVKGWK----ASSGW-GFPKGKIDKDESDVDCA 145 (271)
T ss_dssp SEEEEEEESS----TTCCC-BCSEEECCTTCCHHHHH
T ss_pred CEEEEEEEeC----CCCeE-ECCcccCCCCcCHHHHH
Confidence 4677778754 47999 57799999999998875
No 56
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=53.47 E-value=13 Score=31.23 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.9
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCc-chhHhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNS-NLSLLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE-~l~~~~ 268 (271)
+.++.+.|| ++|+|.. -+|++..|| +++++.
T Consensus 55 ~~~vLl~~r------~~g~w~~-PGG~ve~gE~t~~~aa 86 (212)
T 1u20_A 55 RRVLLMMMR------FDGRLGF-PGGFVDTRDISLEEGL 86 (212)
T ss_dssp CEEEEEEEE------TTSCEEC-SEEEECTTTSCHHHHH
T ss_pred CCEEEEEEe------CCCeEEC-CCcccCCCCCCHHHHH
Confidence 457889998 5888864 579999999 988764
No 57
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=52.32 E-value=13 Score=28.85 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024211 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL 269 (271)
Q Consensus 224 gyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~ 269 (271)
|.+.++| ++.+.||.. |.|. +.+|++..||++.++..
T Consensus 9 ~vv~~~~--~vLL~~r~~------g~W~-~PgG~ve~gEt~~~aa~ 45 (134)
T 3i7u_A 9 GVLFKDG--EVLLIKTPS------NVWS-FPKGNIEPGEKPEETAV 45 (134)
T ss_dssp EEEEETT--EEEEEECTT------SCEE-CCEEECCTTCCHHHHHH
T ss_pred EEEEECC--EEEEEEeCC------CcEE-CCeeEecCCCCHHHHHH
Confidence 4444555 455666643 5664 46799999999998753
No 58
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=51.12 E-value=13 Score=30.89 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=28.7
Q ss_pred eeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 218 ~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
..+-+.+.+.++| ++.+.||+ .+|.|.. .+|++..||++.++.
T Consensus 67 ~~~~v~~vv~~~~--~vLLv~r~-----~~g~w~l-PgG~ve~gEs~~~aa 109 (205)
T 3q1p_A 67 PKVDIRAVVFQNE--KLLFVKEK-----SDGKWAL-PGGWADVGYTPTEVA 109 (205)
T ss_dssp CEEEEEEEEEETT--EEEEEEC--------CCEEC-SEEECCTTCCHHHHH
T ss_pred CcceEEEEEEECC--EEEEEEEc-----CCCcEEC-CcCccCCCCCHHHHH
Confidence 3344455555544 78888876 3788864 789999999998764
No 59
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=46.85 E-value=18 Score=33.28 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=30.8
Q ss_pred eEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 221 PLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 221 Hlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+..+.+..+.+.++.+.||..+ ..|+|+|+-- +|++..| +++++.
T Consensus 241 ~~~~~vi~~~~g~vLL~rR~~~-g~~~GlWefP-GG~ve~g-t~~~al 285 (369)
T 3fsp_A 241 PLAVAVLADDEGRVLIRKRDST-GLLANLWEFP-SCETDGA-DGKEKL 285 (369)
T ss_dssp EEEEEEEECSSSEEEEEECCSS-STTTTCEECC-EEECSSS-CTHHHH
T ss_pred EEEEEEEEeCCCEEEEEECCCC-CCcCCcccCC-CcccCCC-CcHHHH
Confidence 3333333334458999999875 5799999765 6788888 766654
No 60
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=46.51 E-value=10 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=30.7
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.+. ++ ++.+.||... ..++|+|+. .||++.+||+++++.
T Consensus 51 av~vl~~~--~~--~vLLvrq~r~-~~~~~~wel-PgG~ve~gEs~~~aA 94 (198)
T 1vhz_A 51 AVMIVPIV--DD--HLILIREYAV-GTESYELGF-SKGLIDPGESVYEAA 94 (198)
T ss_dssp EEEEEEEE--TT--EEEEEEEEET-TTTEEEEEC-EEEECCTTCCHHHHH
T ss_pred EEEEEEEE--CC--EEEEEEcccC-CCCCcEEEe-CcccCCCCcCHHHHH
Confidence 44444444 33 6666666543 567999984 799999999998774
No 61
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=42.15 E-value=33 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=25.5
Q ss_pred eeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 231 ~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
.+++.+.||.. +|+|. +-+|++.+||++.++.
T Consensus 138 ~l~vLl~~r~~-----~g~W~-lPGG~Ve~GEs~~eAA 169 (292)
T 1q33_A 138 ILQFVAIKRKD-----CGEWA-IPGGMVDPGEKISATL 169 (292)
T ss_dssp CEEEEEEECTT-----TCSEE-CCCEECCTTCCHHHHH
T ss_pred ceEEEEEEecC-----CCcEe-CCCcccCCCCCHHHHH
Confidence 35788888865 38996 5799999999998765
No 62
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=41.90 E-value=21 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=19.4
Q ss_pred EEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 233 FLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 233 ~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
++.+.||+ +|+|... +|++..||++.++.
T Consensus 28 ~vLL~~r~------~g~w~lP-gG~ve~gEs~~~aa 56 (163)
T 3f13_A 28 GVLVTASR------GGRYNLP-GGKANRGELRSQAL 56 (163)
T ss_dssp EEEEEECC---------BBCS-EEECCTTCCHHHHH
T ss_pred EEEEEEEC------CCeEECC-ceeCCCCCCHHHHH
Confidence 45556664 5777654 89999999998875
No 63
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=41.25 E-value=16 Score=30.55 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=29.8
Q ss_pred eEeEEEEEeeCCeeEEEE--eccCCCCCCC--CCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWI--GKRSQVKSTY--PGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv--~rRS~~K~ty--PG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.|..+++ ++.+ +.|...+..+ +++|. +.||++.+||+++++.
T Consensus 59 av~vl~~~~~~~--~vLLvrq~R~~~~~~~~~~~~we-lPgG~ve~gE~~~~aA 109 (209)
T 1g0s_A 59 AAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLE-MVAGMIEEGESVEDVA 109 (209)
T ss_dssp EEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEE-CEEEECCTTCCHHHHH
T ss_pred EEEEEEEECCCC--EEEEEEeecccCCCCCCCCeEEE-eCcccCCCCcCHHHHH
Confidence 555555653334 4444 5676655444 45554 5789999999998774
No 64
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=37.80 E-value=7.6 Score=32.33 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=27.1
Q ss_pred eEEEEeccCCCCCCCCCCchhhhcCCCC-CCcchhHhh
Q 024211 232 KFLWIGKRSQVKSTYPGMLDILAGGGLV-CNSNLSLLF 268 (271)
Q Consensus 232 ~~lWv~rRS~~K~tyPG~LD~~VAGGi~-agE~l~~~~ 268 (271)
.++.+.||... ..++|+|. +.+|++. .||++.++.
T Consensus 55 ~~vLLvrr~r~-~~~~~~w~-lPgG~ve~~gEs~~~aa 90 (207)
T 1mk1_A 55 GNIPMVYQYRH-TYGRRLWE-LPAGLLDVAGEPPHLTA 90 (207)
T ss_dssp SEEEEEEEEET-TTTEEEEE-CCEEECCSTTCCHHHHH
T ss_pred CEEEEEEeecC-CCCCcEEE-eCCccccCCCCCHHHHH
Confidence 36777777655 36889995 6899999 999998764
No 65
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=37.52 E-value=23 Score=27.26 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=27.5
Q ss_pred eEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-.+.. +++ -+.+.++... ..+|+|. +.+|++.+||+++++.
T Consensus 7 ~v~vi~~~~-~~~-vLLv~~~r~~--~~~~~w~-~PgG~ve~gEt~~~aa 51 (145)
T 2w4e_A 7 AVFILPVTA-QGE-AVLIRQFRYP--LRATITE-IVAGGVEKGEDLGAAA 51 (145)
T ss_dssp EEEEEEEET-TSE-EEEEEEEETT--TTEEEEE-CEEEECCTTCCHHHHH
T ss_pred EEEEEEEcC-CCE-EEEEEEEecC--CCCCEEE-eCCccCCCCCCHHHHH
Confidence 455555542 343 2344333222 3567886 6889999999998875
No 66
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=35.05 E-value=15 Score=30.68 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=30.8
Q ss_pred eEeEEEEEeeC-CeeEEEEec--cCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024211 219 AVPLNGYVEKD-GQKFLWIGK--RSQVKSTYPGMLDILAGGGLVCNSNLSLLF 268 (271)
Q Consensus 219 GVHlngyv~~~-g~~~lWv~r--RS~~K~tyPG~LD~~VAGGi~agE~l~~~~ 268 (271)
+|.+-++..++ ++.++.+-| |.. ..+++|+ +.||++..||++.++.
T Consensus 63 av~v~~v~~~~~~~~~vlLv~q~R~~---~~~~~we-lPgG~ve~gEs~~~aA 111 (212)
T 2dsc_A 63 GVAVIPVLQRTLHYECIVLVKQFRPP---MGGYCIE-FPAGLIDDGETPEAAA 111 (212)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEGG---GTEEEEE-CCEEECCTTCCHHHHH
T ss_pred EEEEEEEEeCCCCCcEEEEEEeecCC---CCCcEEE-CCccccCCCCCHHHHH
Confidence 66677777653 233555544 433 3578897 5689999999998775
No 67
>2jzj_A Cyanovirin-N homolog; CVNH, antiviral protein, carbohydrate binding protein; NMR {Ceratopteris richardii}
Probab=24.02 E-value=25 Score=28.32 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=14.0
Q ss_pred Cccccccccceeccc
Q 024211 1 MACNFHHLTQTIRLS 15 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (271)
|||+||.-|+-||+.
T Consensus 1 ~a~~Fs~Sc~dI~l~ 15 (124)
T 2jzj_A 1 MQCNFANSCTGVELY 15 (124)
T ss_dssp CCCCGGGSEEEEEEE
T ss_pred CCCchhhhcCCcEEE
Confidence 899999999999985
No 68
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=23.84 E-value=46 Score=26.18 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=18.7
Q ss_pred CCCCeeeEEECCEEEEeecHHHHHHhh
Q 024211 108 MQSEFFPFIIEDQVAGYTHNRFASHLR 134 (271)
Q Consensus 108 ~~~~~~PF~i~g~~VGyI~p~v~~~L~ 134 (271)
++....=+..+|..||||+...++.|.
T Consensus 46 D~nAI~V~~~~g~kvGYvPr~~a~~la 72 (109)
T 3k2y_A 46 DDNAISVWTLQHAKLGYIARYQNQPYA 72 (109)
T ss_dssp CTTCEEEECTTCCEEEEECGGGHHHHH
T ss_pred ChhHEEEEeCCCCEEEEecHHHHHHHH
Confidence 333343333578899999999888764
Done!