Query         024213
Match_columns 271
No_of_seqs    99 out of 127
Neff          3.6 
Searched_HMMs 46136
Date          Fri Mar 29 02:54:44 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024213hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF11891 DUF3411:  Domain of un 100.0 5.6E-35 1.2E-39  255.5   5.6   89  180-270     1-90  (180)
  2 PLN03138 Protein TOC75; Provis  94.1    0.13 2.8E-06   54.8   7.1   21    2-22      5-25  (796)
  3 COG4907 Predicted membrane pro  89.0    0.31 6.7E-06   49.8   2.8    9   30-38    546-554 (595)
  4 TIGR02877 spore_yhbH sporulati  87.2     1.9 4.2E-05   42.5   7.0   15  119-133   112-126 (371)
  5 PRK05325 hypothetical protein;  86.9     2.1 4.6E-05   42.6   7.2   16  119-134   100-115 (401)
  6 PF04285 DUF444:  Protein of un  85.7     1.7 3.8E-05   43.4   5.9   13  119-131   116-128 (421)
  7 COG1512 Beta-propeller domains  81.9     1.5 3.2E-05   41.5   3.5    9   82-90    239-247 (271)
  8 PHA00370 III attachment protei  72.0     9.5 0.00021   36.6   5.8   15  152-166   212-226 (297)
  9 KOG3915 Transcription regulato  70.2     3.9 8.5E-05   42.2   3.0    9  219-227   204-212 (641)
 10 KOG0921 Dosage compensation co  67.3     6.7 0.00015   43.5   4.2   13   71-83   1213-1225(1282)
 11 PTZ00146 fibrillarin; Provisio  66.8     7.3 0.00016   37.3   3.9   10  218-227   202-211 (293)
 12 PF02084 Bindin:  Bindin;  Inte  65.7      15 0.00032   34.6   5.6   25  124-148   107-131 (238)
 13 PF02979 NHase_alpha:  Nitrile   65.5     7.9 0.00017   35.3   3.7   43  145-187    17-65  (188)
 14 PF04285 DUF444:  Protein of un  61.7      12 0.00026   37.6   4.5    9  103-111   104-112 (421)
 15 TIGR01659 sex-lethal sex-letha  58.2      13 0.00029   35.8   4.1   36   28-63    237-272 (346)
 16 PHA00370 III attachment protei  57.3      19 0.00041   34.7   4.8   16  201-216   244-259 (297)
 17 PRK07772 single-stranded DNA-b  55.3      26 0.00057   31.4   5.2    6    7-12     30-35  (186)
 18 PLN03134 glycine-rich RNA-bind  54.9      18  0.0004   30.4   4.0    8   25-32     33-40  (144)
 19 PF08671 SinI:  Anti-repressor   49.1      14  0.0003   24.5   1.8   21  141-162     9-29  (30)
 20 PRK05325 hypothetical protein;  48.4      25 0.00053   35.3   4.3   11   59-69     38-48  (401)
 21 COG2718 Uncharacterized conser  47.3      44 0.00095   33.9   5.8   18  117-134   114-131 (423)
 22 PRK05255 hypothetical protein;  41.9 1.6E+02  0.0035   26.3   8.0   15  174-188   108-123 (171)
 23 KOG3074 Transcriptional regula  41.2      17 0.00037   34.5   1.8   14  117-130    46-59  (263)
 24 TIGR02877 spore_yhbH sporulati  39.5      36 0.00077   33.9   3.8    8  104-111   101-108 (371)
 25 COG2718 Uncharacterized conser  38.1      41  0.0009   34.0   4.0   17   99-115   100-116 (423)
 26 COG3028 Uncharacterized protei  36.5 1.2E+02  0.0025   27.9   6.2   15  171-185   115-129 (187)
 27 KOG0105 Alternative splicing f  35.4      85  0.0018   29.4   5.3   35   26-62     45-79  (241)
 28 PRK12799 motB flagellar motor   34.9      29 0.00063   34.9   2.5   25  218-242    26-50  (421)
 29 TIGR03795 chp_BMA0021 conserve  32.6      32  0.0007   29.0   2.0   21  167-187    17-39  (114)
 30 KOG1456 Heterogeneous nuclear   31.0      38 0.00083   34.4   2.6   18  176-193   106-123 (494)
 31 TIGR01323 nitrile_alph nitrile  29.9      57  0.0012   29.8   3.2   43  145-187    11-59  (185)
 32 PF07631 PSD4:  Protein of unkn  28.8      89  0.0019   26.2   4.0   34  135-188    16-51  (128)
 33 KOG1596 Fibrillarin and relate  28.2      82  0.0018   30.7   4.1    8  219-226   227-234 (317)
 34 TIGR01659 sex-lethal sex-letha  27.0      75  0.0016   30.7   3.7    6   27-32    194-199 (346)
 35 TIGR03793 TOMM_pelo TOMM prope  26.9      42  0.0009   26.3   1.6   12  176-187    17-28  (77)
 36 PLN03134 glycine-rich RNA-bind  26.2      87  0.0019   26.3   3.6   15   29-43     79-93  (144)
 37 PF10415 FumaraseC_C:  Fumarase  25.9      91   0.002   22.7   3.2   37  123-162    14-50  (55)
 38 PF05603 DUF775:  Protein of un  24.9      88  0.0019   28.2   3.5   24  166-189   179-202 (202)
 39 PRK06925 flagellar motor prote  24.3      64  0.0014   29.1   2.6   26  217-242    13-38  (230)
 40 PRK07734 motB flagellar motor   23.4      63  0.0014   29.6   2.4   25  217-241    17-41  (259)
 41 PF13677 MotB_plug:  Membrane M  23.2      94   0.002   22.7   2.8   27  217-243    15-41  (58)
 42 TIGR00625 tfb2 Transcription f  23.0      91   0.002   31.8   3.6   68  125-193   313-400 (448)
 43 PF15207 TMEM240:  TMEM240 fami  22.8      94   0.002   27.9   3.2   25  215-240    84-108 (180)

No 1  
>PF11891 DUF3411:  Domain of unknown function (DUF3411);  InterPro: IPR021825  This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. 
Probab=100.00  E-value=5.6e-35  Score=255.48  Aligned_cols=89  Identities=51%  Similarity=0.885  Sum_probs=85.7

Q ss_pred             HHHhcCCcchhhhhhhhhhhhhhhhhHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcC-CchhhH
Q 024213          180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSAS-SGLFGR  258 (271)
Q Consensus       180 ~RlLADP~FlfKl~~E~~i~v~~~~~aE~~~Rge~f~~ElDfv~advv~~~i~nfaLV~lLAPt~s~g~~~~s-~g~~~~  258 (271)
                      +||||||+|||||++||+|+++|+++|||++|||+||+|||||++|+++++|+||+||||||||+++++++++ ++  +.
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~--~~   78 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPG--GG   78 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccc--hH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999973 44  89


Q ss_pred             HHHHhccCCCCC
Q 024213          259 IQNACGSLPSSF  270 (271)
Q Consensus       259 lq~~l~~LPsnv  270 (271)
                      ||+.+++||||+
T Consensus        79 ~~~~~~~~P~n~   90 (180)
T PF11891_consen   79 LQKFLGSLPNNA   90 (180)
T ss_pred             HHHHHHhChHHH
Confidence            999999999997


No 2  
>PLN03138 Protein TOC75; Provisional
Probab=94.11  E-value=0.13  Score=54.78  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=16.1

Q ss_pred             CcccccccCCCCCCCCCCCCc
Q 024213            2 SACSSTFRLPNLPNISPQNHN   22 (271)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~   22 (271)
                      ++|.+.++-++++.-.||+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~   25 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSS   25 (796)
T ss_pred             cccceeccCCCccCCCccccc
Confidence            578888888888887777654


No 3  
>COG4907 Predicted membrane protein [Function unknown]
Probab=89.00  E-value=0.31  Score=49.81  Aligned_cols=9  Identities=0%  Similarity=-0.108  Sum_probs=3.9

Q ss_pred             eEeecccCC
Q 024213           30 FLSLRHSTA   38 (271)
Q Consensus        30 ~~~~~~s~~   38 (271)
                      |.-+||+--
T Consensus       546 ~~i~h~nys  554 (595)
T COG4907         546 SPIFHNNYS  554 (595)
T ss_pred             eeEEecchh
Confidence            334455433


No 4  
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=87.18  E-value=1.9  Score=42.55  Aligned_cols=15  Identities=13%  Similarity=0.155  Sum_probs=10.6

Q ss_pred             ccccHHHHHHHHHhc
Q 024213          119 PILKFEEVMKEIELK  133 (271)
Q Consensus       119 ~ll~~~eVl~ea~r~  133 (271)
                      --++.+|+++....-
T Consensus       112 ~e~s~eE~~~~lfEd  126 (371)
T TIGR02877       112 TEVTLEELFELLFED  126 (371)
T ss_pred             EEecHHHHHHHHHhh
Confidence            347888888887543


No 5  
>PRK05325 hypothetical protein; Provisional
Probab=86.91  E-value=2.1  Score=42.58  Aligned_cols=16  Identities=13%  Similarity=0.005  Sum_probs=11.0

Q ss_pred             ccccHHHHHHHHHhcC
Q 024213          119 PILKFEEVMKEIELKG  134 (271)
Q Consensus       119 ~ll~~~eVl~ea~r~~  134 (271)
                      --++.+|++......+
T Consensus       100 ~els~eE~~~~lfEdL  115 (401)
T PRK05325        100 FEISLEELLDLLFEDL  115 (401)
T ss_pred             EEecHHHHHHHHHhhc
Confidence            3478888888875543


No 6  
>PF04285 DUF444:  Protein of unknown function (DUF444);  InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=85.72  E-value=1.7  Score=43.39  Aligned_cols=13  Identities=23%  Similarity=0.031  Sum_probs=9.1

Q ss_pred             ccccHHHHHHHHH
Q 024213          119 PILKFEEVMKEIE  131 (271)
Q Consensus       119 ~ll~~~eVl~ea~  131 (271)
                      --++.+|++....
T Consensus       116 ~els~eE~~~llf  128 (421)
T PF04285_consen  116 FELSREEFLDLLF  128 (421)
T ss_pred             EEEEHHHHHHHhH
Confidence            4577788877763


No 7  
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=81.95  E-value=1.5  Score=41.49  Aligned_cols=9  Identities=56%  Similarity=1.062  Sum_probs=3.2

Q ss_pred             CCCCCCCCC
Q 024213           82 GDGGAGDSP   90 (271)
Q Consensus        82 G~G~~G~~~   90 (271)
                      |.|++|+.+
T Consensus       239 g~g~~g~~g  247 (271)
T COG1512         239 GSGGSGGSG  247 (271)
T ss_pred             CCCCCCCCC
Confidence            333333333


No 8  
>PHA00370 III attachment protein
Probab=71.98  E-value=9.5  Score=36.64  Aligned_cols=15  Identities=13%  Similarity=-0.066  Sum_probs=6.6

Q ss_pred             HHHHHHHHhhcCCcc
Q 024213          152 KMFLLRYLDLQGSVW  166 (271)
Q Consensus       152 ~a~L~rfl~l~~sp~  166 (271)
                      .++|...=+=+.+||
T Consensus       212 ~s~md~lg~g~gS~~  226 (297)
T PHA00370        212 NSEMDQLGEGDGSPL  226 (297)
T ss_pred             hhhhhhhcccCCcHH
Confidence            344443334444454


No 9  
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=70.23  E-value=3.9  Score=42.18  Aligned_cols=9  Identities=44%  Similarity=1.058  Sum_probs=3.8

Q ss_pred             HHHHHHHHH
Q 024213          219 FELYLADLL  227 (271)
Q Consensus       219 lDfv~advv  227 (271)
                      ||+++-++|
T Consensus       204 fdlFLKhlV  212 (641)
T KOG3915|consen  204 FDLFLKHLV  212 (641)
T ss_pred             HHHHHHHHh
Confidence            444444443


No 10 
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=67.34  E-value=6.7  Score=43.52  Aligned_cols=13  Identities=8%  Similarity=0.187  Sum_probs=5.7

Q ss_pred             cCCCCccccCCCC
Q 024213           71 ADCEPRIHSSGGD   83 (271)
Q Consensus        71 ~~~~p~~~~~~G~   83 (271)
                      +...+++..+.|+
T Consensus      1213 ~~~~~~~Gagvg~ 1225 (1282)
T KOG0921|consen 1213 PSARANYGAGVGN 1225 (1282)
T ss_pred             CCCCCCccccccC
Confidence            4444544444333


No 11 
>PTZ00146 fibrillarin; Provisional
Probab=66.82  E-value=7.3  Score=37.27  Aligned_cols=10  Identities=20%  Similarity=0.388  Sum_probs=7.0

Q ss_pred             hHHHHHHHHH
Q 024213          218 EFELYLADLL  227 (271)
Q Consensus       218 ElDfv~advv  227 (271)
                      .+|+||+|+.
T Consensus       202 ~vDvV~~Dva  211 (293)
T PTZ00146        202 MVDVIFADVA  211 (293)
T ss_pred             CCCEEEEeCC
Confidence            3688887774


No 12 
>PF02084 Bindin:  Bindin;  InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=65.65  E-value=15  Score=34.58  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=17.6

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHc
Q 024213          124 EEVMKEIELKGVGLPDDMMEAAKTV  148 (271)
Q Consensus       124 ~eVl~ea~r~~~sLPaDl~~Aa~~g  148 (271)
                      +.+.+-+.+|..+||-|+-+-++.|
T Consensus       107 ~~ikavLgaTKiDLPVDINDPYDlG  131 (238)
T PF02084_consen  107 EDIKAVLGATKIDLPVDINDPYDLG  131 (238)
T ss_pred             HHHHHHhcccccccccccCChhhHH
Confidence            4444555889999999987755544


No 13 
>PF02979 NHase_alpha:  Nitrile hydratase, alpha chain;  InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase [].  This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=65.53  E-value=7.9  Score=35.26  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=30.1

Q ss_pred             HHHcCCCHHHHHHHHhhcCC---cch-hHHHHHHh--hhhHHHHhcCCc
Q 024213          145 AKTVGIRKMFLLRYLDLQGS---VWP-LGFLMRYC--FMLRDRMLADPS  187 (271)
Q Consensus       145 a~~g~vs~a~L~rfl~l~~s---p~~-l~~L~r~~--~g~r~RlLADP~  187 (271)
                      ++.|.|+++.+.++++...+   |-. .+-+.|+|  +.||.|||+||.
T Consensus        17 ~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~   65 (188)
T PF02979_consen   17 IEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPT   65 (188)
T ss_dssp             HHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHH
T ss_pred             HHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHH
Confidence            45689999988888876553   221 24556666  899999999976


No 14 
>PF04285 DUF444:  Protein of unknown function (DUF444);  InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=61.68  E-value=12  Score=37.61  Aligned_cols=9  Identities=78%  Similarity=1.509  Sum_probs=4.1

Q ss_pred             CCCCCCCCC
Q 024213          103 GGGDGEGND  111 (271)
Q Consensus       103 G~g~g~g~d  111 (271)
                      |.|+|+|+|
T Consensus       104 gag~geGeD  112 (421)
T PF04285_consen  104 GAGDGEGED  112 (421)
T ss_pred             CCCCCCCCC
Confidence            344544544


No 15 
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=58.23  E-value=13  Score=35.75  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=16.5

Q ss_pred             eeeEeecccCCCCccccccccccCCCCCCCceeecC
Q 024213           28 TVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIP   63 (271)
Q Consensus        28 ~~~~~~~~s~~~~~~~~~~~c~~sd~~a~~~tie~s   63 (271)
                      ..|++|.+-.--..|+..+...--+....+++|.+.
T Consensus       237 ~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a  272 (346)
T TIGR01659       237 VAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA  272 (346)
T ss_pred             EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence            457777665544444433332211222235555543


No 16 
>PHA00370 III attachment protein
Probab=57.30  E-value=19  Score=34.70  Aligned_cols=16  Identities=19%  Similarity=0.270  Sum_probs=6.4

Q ss_pred             hhhhhHHHhhccccch
Q 024213          201 CCATLAEFQKRGKDFW  216 (271)
Q Consensus       201 ~~~~~aE~~~Rge~f~  216 (271)
                      .|.-+.+++---.+|.
T Consensus       244 ~C~~FV~~~geVYe~~  259 (297)
T PHA00370        244 GCTPFVFAQGKVYEFI  259 (297)
T ss_pred             CCCcceeeccchhhhh
Confidence            3444444443333333


No 17 
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=55.32  E-value=26  Score=31.43  Aligned_cols=6  Identities=17%  Similarity=0.573  Sum_probs=2.9

Q ss_pred             cccCCC
Q 024213            7 TFRLPN   12 (271)
Q Consensus         7 ~~~~~~   12 (271)
                      +|||-.
T Consensus        30 ~FrVAv   35 (186)
T PRK07772         30 NFTVAS   35 (186)
T ss_pred             EEEEEe
Confidence            455544


No 18 
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=54.94  E-value=18  Score=30.38  Aligned_cols=8  Identities=38%  Similarity=0.804  Sum_probs=3.3

Q ss_pred             ccceeeEe
Q 024213           25 MPTTVFLS   32 (271)
Q Consensus        25 ~~~~~~~~   32 (271)
                      ++++||+.
T Consensus        33 ~~~~lfVg   40 (144)
T PLN03134         33 MSTKLFIG   40 (144)
T ss_pred             CCCEEEEe
Confidence            33444443


No 19 
>PF08671 SinI:  Anti-repressor SinI;  InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=49.08  E-value=14  Score=24.46  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=14.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHhhc
Q 024213          141 MMEAAKTVGIRKMFLLRYLDLQ  162 (271)
Q Consensus       141 l~~Aa~~g~vs~a~L~rfl~l~  162 (271)
                      |.+|.++| ++.+.+.+||+.+
T Consensus         9 i~eA~~~G-ls~eeir~FL~~~   29 (30)
T PF08671_consen    9 IKEAKESG-LSKEEIREFLEFN   29 (30)
T ss_dssp             HHHHHHTT---HHHHHHHHHHH
T ss_pred             HHHHHHcC-CCHHHHHHHHHhC
Confidence            45666666 9999999999865


No 20 
>PRK05325 hypothetical protein; Provisional
Probab=48.38  E-value=25  Score=35.26  Aligned_cols=11  Identities=27%  Similarity=0.456  Sum_probs=5.1

Q ss_pred             eeecCCccccc
Q 024213           59 TIEIPGKITEE   69 (271)
Q Consensus        59 tie~sg~it~~   69 (271)
                      .|-||-+.+.+
T Consensus        38 ~v~IPi~~i~E   48 (401)
T PRK05325         38 VVSIPIRDIDE   48 (401)
T ss_pred             eEEecCCCCcc
Confidence            34445445443


No 21 
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=47.31  E-value=44  Score=33.86  Aligned_cols=18  Identities=22%  Similarity=0.021  Sum_probs=11.5

Q ss_pred             ccccccHHHHHHHHHhcC
Q 024213          117 FGPILKFEEVMKEIELKG  134 (271)
Q Consensus       117 ~G~ll~~~eVl~ea~r~~  134 (271)
                      |=--.++++++....+-+
T Consensus       114 F~~~is~~e~~dllFedL  131 (423)
T COG2718         114 FVFQISREEVLDLLFEDL  131 (423)
T ss_pred             hheeeehhHHHHHHHHHh
Confidence            335577788877776543


No 22 
>PRK05255 hypothetical protein; Provisional
Probab=41.92  E-value=1.6e+02  Score=26.32  Aligned_cols=15  Identities=33%  Similarity=0.246  Sum_probs=11.0

Q ss_pred             HhhhhHHHHhc-CCcc
Q 024213          174 YCFMLRDRMLA-DPSF  188 (271)
Q Consensus       174 ~~~g~r~RlLA-DP~F  188 (271)
                      .+-.||+||++ |+.-
T Consensus       108 ~lE~wRdrLi~~~d~a  123 (171)
T PRK05255        108 KLERWRDRLLAEGDDA  123 (171)
T ss_pred             HHHHHHHHHHhCCHHH
Confidence            34789999999 4443


No 23 
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=41.19  E-value=17  Score=34.54  Aligned_cols=14  Identities=36%  Similarity=0.228  Sum_probs=8.8

Q ss_pred             ccccccHHHHHHHH
Q 024213          117 FGPILKFEEVMKEI  130 (271)
Q Consensus       117 ~G~ll~~~eVl~ea  130 (271)
                      .|++++-.||=+.+
T Consensus        46 rGRflKIaE~g~~~   59 (263)
T KOG3074|consen   46 RGRFLKIAEVGAGG   59 (263)
T ss_pred             CcceEEEEEeccCC
Confidence            67777776654433


No 24 
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=39.46  E-value=36  Score=33.93  Aligned_cols=8  Identities=63%  Similarity=1.107  Sum_probs=3.7

Q ss_pred             CCCCCCCC
Q 024213          104 GGDGEGND  111 (271)
Q Consensus       104 ~g~g~g~d  111 (271)
                      .|+|+|+|
T Consensus       101 ag~geGed  108 (371)
T TIGR02877       101 AGDQEGED  108 (371)
T ss_pred             CCCCCCcc
Confidence            44444444


No 25 
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=38.06  E-value=41  Score=34.05  Aligned_cols=17  Identities=41%  Similarity=0.601  Sum_probs=8.8

Q ss_pred             CCCCCCCCCCCCCCCcc
Q 024213           99 DSGGGGGDGEGNDGEEK  115 (271)
Q Consensus        99 ~gggG~g~g~g~d~~de  115 (271)
                      |.|+|.|+++++|+=..
T Consensus       100 g~g~~ag~~egED~F~~  116 (423)
T COG2718         100 GKGQAAGDGEGEDEFVF  116 (423)
T ss_pred             CCCCccCCCCCcchhhe
Confidence            34445566666655433


No 26 
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.52  E-value=1.2e+02  Score=27.90  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=11.3

Q ss_pred             HHHHhhhhHHHHhcC
Q 024213          171 LMRYCFMLRDRMLAD  185 (271)
Q Consensus       171 L~r~~~g~r~RlLAD  185 (271)
                      ++.++-.||+||+|+
T Consensus       115 ~lHklE~~RdrLia~  129 (187)
T COG3028         115 LLHKLEQLRDRLIAE  129 (187)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            344457899999998


No 27 
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=35.43  E-value=85  Score=29.41  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=17.4

Q ss_pred             cceeeEeecccCCCCccccccccccCCCCCCCceeec
Q 024213           26 PTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEI   62 (271)
Q Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~c~~sd~~a~~~tie~   62 (271)
                      |...|++|.|.---.-+. ..|=. -|.+---+.||.
T Consensus        45 ppfafVeFEd~RDAeDAi-ygRdG-Ydydg~rLRVEf   79 (241)
T KOG0105|consen   45 PPFAFVEFEDPRDAEDAI-YGRDG-YDYDGCRLRVEF   79 (241)
T ss_pred             CCeeEEEecCccchhhhh-hcccc-cccCcceEEEEe
Confidence            455677777664444444 33332 444444444444


No 28 
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=34.86  E-value=29  Score=34.93  Aligned_cols=25  Identities=16%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccc
Q 024213          218 EFELYLADLLVGLVVDIALVGMLAP  242 (271)
Q Consensus       218 ElDfv~advv~~~i~nfaLV~lLAP  242 (271)
                      .|=+.++|+++++.+=|+|+|+++=
T Consensus        26 aWkVAYADfvTlLMAFFlLLwsmSs   50 (421)
T PRK12799         26 SWKIAYADFMTAMMAFFLVMWLLAV   50 (421)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhc
Confidence            6999999999999999999999874


No 29 
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=32.57  E-value=32  Score=29.05  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.1

Q ss_pred             hhHHHHHHh--hhhHHHHhcCCc
Q 024213          167 PLGFLMRYC--FMLRDRMLADPS  187 (271)
Q Consensus       167 ~l~~L~r~~--~g~r~RlLADP~  187 (271)
                      .+|.+.+++  ..||+||++||.
T Consensus        17 ~lraIA~AW~DpaFr~eLl~DPk   39 (114)
T TIGR03795        17 YLRAIALAWHSPEFKDELLADPV   39 (114)
T ss_pred             HHHHHHHHhCCHHHHHHHHHCHH
Confidence            468888877  899999999997


No 30 
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=31.04  E-value=38  Score=34.43  Aligned_cols=18  Identities=17%  Similarity=-0.156  Sum_probs=10.5

Q ss_pred             hhhHHHHhcCCcchhhhh
Q 024213          176 FMLRDRMLADPSFLFKVG  193 (271)
Q Consensus       176 ~g~r~RlLADP~FlfKl~  193 (271)
                      +.-.+|+--|++=+-|++
T Consensus       106 sq~i~R~g~es~~pN~VL  123 (494)
T KOG1456|consen  106 SQCIERPGDESATPNKVL  123 (494)
T ss_pred             hhhhccCCCCCCCCCeEE
Confidence            455667666666555544


No 31 
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=29.86  E-value=57  Score=29.81  Aligned_cols=43  Identities=12%  Similarity=-0.048  Sum_probs=29.6

Q ss_pred             HHHcCCCHHHHHHHHhhcCC---cc-hhHHHHHHh--hhhHHHHhcCCc
Q 024213          145 AKTVGIRKMFLLRYLDLQGS---VW-PLGFLMRYC--FMLRDRMLADPS  187 (271)
Q Consensus       145 a~~g~vs~a~L~rfl~l~~s---p~-~l~~L~r~~--~g~r~RlLADP~  187 (271)
                      ++.|.|.++.+.+.++....   |. =.+-+.|+|  +.||.|||+|..
T Consensus        11 ~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~   59 (185)
T TIGR01323        11 KSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDAT   59 (185)
T ss_pred             HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChH
Confidence            45688888887777765443   21 135566666  899999999965


No 32 
>PF07631 PSD4:  Protein of unknown function (DUF1592);  InterPro: IPR013042  A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=28.79  E-value=89  Score=26.22  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             CCch-HHHHHHHHHcCCC-HHHHHHHHhhcCCcchhHHHHHHhhhhHHHHhcCCcc
Q 024213          135 VGLP-DDMMEAAKTVGIR-KMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSF  188 (271)
Q Consensus       135 ~sLP-aDl~~Aa~~g~vs-~a~L~rfl~l~~sp~~l~~L~r~~~g~r~RlLADP~F  188 (271)
                      .+.| +.|.+||+.|.++ +++                    ++.-.+|||+||.+
T Consensus        16 ~s~PD~~L~~aA~~g~L~~~~~--------------------l~~q~~RML~dpr~   51 (128)
T PF07631_consen   16 GSPPDAELLDAAAAGELRTPEQ--------------------LRAQAERMLADPRA   51 (128)
T ss_pred             cCCCCHHHHHHHHhCCCCCHHH--------------------HHHHHHHHHcCccH
Confidence            3444 4578888888875 332                    24556889999986


No 33 
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=28.17  E-value=82  Score=30.68  Aligned_cols=8  Identities=25%  Similarity=0.617  Sum_probs=3.9

Q ss_pred             HHHHHHHH
Q 024213          219 FELYLADL  226 (271)
Q Consensus       219 lDfv~adv  226 (271)
                      .|.+|+||
T Consensus       227 VDvIFaDv  234 (317)
T KOG1596|consen  227 VDVIFADV  234 (317)
T ss_pred             EEEEeccC
Confidence            34555544


No 34 
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=26.99  E-value=75  Score=30.71  Aligned_cols=6  Identities=17%  Similarity=0.733  Sum_probs=2.9

Q ss_pred             ceeeEe
Q 024213           27 TTVFLS   32 (271)
Q Consensus        27 ~~~~~~   32 (271)
                      +++|+.
T Consensus       194 ~~lfV~  199 (346)
T TIGR01659       194 TNLYVT  199 (346)
T ss_pred             ceeEEe
Confidence            445544


No 35 
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.91  E-value=42  Score=26.25  Aligned_cols=12  Identities=17%  Similarity=0.492  Sum_probs=11.3

Q ss_pred             hhhHHHHhcCCc
Q 024213          176 FMLRDRMLADPS  187 (271)
Q Consensus       176 ~g~r~RlLADP~  187 (271)
                      +.||.||++||.
T Consensus        17 p~Fr~~Ll~DPr   28 (77)
T TIGR03793        17 EAFKQALLTNPK   28 (77)
T ss_pred             HHHHHHHHHCHH
Confidence            899999999987


No 36 
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=26.20  E-value=87  Score=26.32  Aligned_cols=15  Identities=20%  Similarity=0.383  Sum_probs=7.8

Q ss_pred             eeEeecccCCCCccc
Q 024213           29 VFLSLRHSTATNPAL   43 (271)
Q Consensus        29 ~~~~~~~s~~~~~~~   43 (271)
                      -|++|.+-..-..++
T Consensus        79 aFV~F~~~e~A~~Al   93 (144)
T PLN03134         79 GFVNFNDEGAATAAI   93 (144)
T ss_pred             EEEEECCHHHHHHHH
Confidence            566665544444444


No 37 
>PF10415 FumaraseC_C:  Fumarase C C-terminus;  InterPro: IPR018951  Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=25.89  E-value=91  Score=22.71  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHcCCCHHHHHHHHhhc
Q 024213          123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQ  162 (271)
Q Consensus       123 ~~eVl~ea~r~~~sLPaDl~~Aa~~g~vs~a~L~rfl~l~  162 (271)
                      ..+|-++|.+++.++..-.   .+.|.++++++.+.|+.+
T Consensus        14 aa~iAk~A~~~g~svre~v---~~~g~lt~ee~d~ll~p~   50 (55)
T PF10415_consen   14 AAEIAKEALAEGRSVREVV---LEEGLLTEEELDELLDPE   50 (55)
T ss_dssp             HHHHHHHHHHHT--HHHHH---HHTTSS-HHHHHHHTSHH
T ss_pred             HHHHHHHHHHcCCCHHHHH---HHcCCCCHHHHHHHcCHH
Confidence            4678889999999987654   357889999999998764


No 38 
>PF05603 DUF775:  Protein of unknown function (DUF775);  InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=24.89  E-value=88  Score=28.22  Aligned_cols=24  Identities=25%  Similarity=0.532  Sum_probs=20.8

Q ss_pred             chhHHHHHHhhhhHHHHhcCCcch
Q 024213          166 WPLGFLMRYCFMLRDRMLADPSFL  189 (271)
Q Consensus       166 ~~l~~L~r~~~g~r~RlLADP~Fl  189 (271)
                      .|+..+-+=+..|..|+-.||.|+
T Consensus       179 VP~~~~~~W~~kFe~Kl~~dP~Fl  202 (202)
T PF05603_consen  179 VPLSVFDKWWEKFERKLRNDPNFL  202 (202)
T ss_pred             EeHHHHHHHHHHHHHHHhcCCCCC
Confidence            567777777799999999999996


No 39 
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=24.29  E-value=64  Score=29.07  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccc
Q 024213          217 SEFELYLADLLVGLVVDIALVGMLAP  242 (271)
Q Consensus       217 ~ElDfv~advv~~~i~nfaLV~lLAP  242 (271)
                      ..|=.-++|+++.+.+=|+|+|.++=
T Consensus        13 ~~W~vtyaD~~TlLlafFvlL~s~s~   38 (230)
T PRK06925         13 PKWMVTFSDLITLILVFFILLFSMSQ   38 (230)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999999883


No 40 
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=23.44  E-value=63  Score=29.65  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcc
Q 024213          217 SEFELYLADLLVGLVVDIALVGMLA  241 (271)
Q Consensus       217 ~ElDfv~advv~~~i~nfaLV~lLA  241 (271)
                      ..|=.-++|++|++.+=|+|+|+++
T Consensus        17 ~~W~vtYAD~vTlLlaFFvlL~s~s   41 (259)
T PRK07734         17 ESWLIPYADLLTLLLALFIVLFAMS   41 (259)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHh
Confidence            3699999999999999999999987


No 41 
>PF13677 MotB_plug:  Membrane MotB of proton-channel complex MotA/MotB 
Probab=23.16  E-value=94  Score=22.73  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcccc
Q 024213          217 SEFELYLADLLVGLVVDIALVGMLAPY  243 (271)
Q Consensus       217 ~ElDfv~advv~~~i~nfaLV~lLAPt  243 (271)
                      ..|-+-++|+++.+.+=|+++|.++-.
T Consensus        15 ~~WlvtyaDlmTLLl~fFVlL~s~s~~   41 (58)
T PF13677_consen   15 PRWLVTYADLMTLLLAFFVLLFSMSSV   41 (58)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            369999999999999999999987654


No 42 
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.96  E-value=91  Score=31.83  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCCch---------HHHHHHHHHcCCCHHHHHHHHhhcCCcchhH--------HHHH---HhhhhHHHHhc
Q 024213          125 EVMKEIELKGVGLP---------DDMMEAAKTVGIRKMFLLRYLDLQGSVWPLG--------FLMR---YCFMLRDRMLA  184 (271)
Q Consensus       125 eVl~ea~r~~~sLP---------aDl~~Aa~~g~vs~a~L~rfl~l~~sp~~l~--------~L~r---~~~g~r~RlLA  184 (271)
                      ++++.--+-...+|         ..++.|.+.| |...|+.+||+-.+.|...+        -++.   .|..=|+|+-.
T Consensus       313 ~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~G-ITa~qIi~fl~~~ahp~~~~~~~~~lP~tv~dQi~lWe~e~~R~~~  391 (448)
T TIGR00625       313 ALIALFSELLARFPNMVVGQITRESIRRALANG-ITAQQIIHYLRTHAHPQMRKEQTPVLPPTIVDQIRLWELERDRLRF  391 (448)
T ss_pred             HHHHHHHHHHhcCCceEEEEecHHHHHHHHHcC-CCHHHHHHHHHhcCChhhhccCCCCCChHHHHHHHHHHHHhcceEe
Confidence            45554444444444         5677888877 99999999999888765211        2332   33444789999


Q ss_pred             CCcchhhhh
Q 024213          185 DPSFLFKVG  193 (271)
Q Consensus       185 DP~FlfKl~  193 (271)
                      .|.||||=.
T Consensus       392 ~~~~l~~~f  400 (448)
T TIGR00625       392 TEGVLYNDF  400 (448)
T ss_pred             ecceeeeec
Confidence            998887643


No 43 
>PF15207 TMEM240:  TMEM240 family
Probab=22.80  E-value=94  Score=27.86  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhc
Q 024213          215 FWSEFELYLADLLVGLVVDIALVGML  240 (271)
Q Consensus       215 f~~ElDfv~advv~~~i~nfaLV~lL  240 (271)
                      -++|+|+++ -++++.+...+||||=
T Consensus        84 tkqeidlml-glllgfcisw~l~wmd  108 (180)
T PF15207_consen   84 TKQEIDLML-GLLLGFCISWFLVWMD  108 (180)
T ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            478999987 5788999999999983


Done!