Query 024213
Match_columns 271
No_of_seqs 99 out of 127
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 67.7 4.4 0.00015 36.5 3.9 43 145-187 48-96 (226)
2 3hht_A NitrIle hydratase alpha 57.2 9.8 0.00034 34.1 4.1 43 145-187 37-85 (216)
3 1p4b_L Antibody variable light 50.8 3.2 0.00011 32.3 0.0 6 59-64 79-84 (135)
4 3u6r_H Antibody 1:7 (heavy cha 50.0 3.6 0.00012 33.1 0.2 12 57-68 81-92 (149)
5 3a8g_A NitrIle hydratase subun 41.1 17 0.0006 32.3 3.1 43 145-187 31-79 (207)
6 1ugp_A NitrIle hydratase alpha 41.0 28 0.00095 30.9 4.3 43 145-187 28-76 (203)
7 2zzd_C Thiocyanate hydrolase s 39.7 17 0.00059 33.0 2.9 43 145-187 39-86 (243)
8 4fm4_A NitrIle hydratase alpha 37.7 17 0.00058 32.4 2.5 42 146-187 22-69 (209)
9 3pgw_S U1-70K; protein-RNA com 31.9 29 0.001 32.6 3.3 10 29-38 147-156 (437)
10 3ng9_A Capsid protein; beta ba 29.5 15 0.00051 38.0 0.9 19 89-107 204-222 (736)
11 3pgz_A Single-stranded DNA-bin 25.3 17 0.00057 31.6 0.3 9 58-66 97-105 (193)
12 3pgw_S U1-70K; protein-RNA com 21.7 73 0.0025 29.9 3.9 6 27-32 103-108 (437)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=67.71 E-value=4.4 Score=36.53 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHh-hcC--Ccch-hHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLD-LQG--SVWP-LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~-l~~--sp~~-l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|.++.+.++++ ++. .|.. .+-+.|+| +.||.|||+||.
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~ 96 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGT 96 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHH
Confidence 5679999999999988 433 3321 25566666 899999999976
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=57.16 E-value=9.8 Score=34.07 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHcCCCHHHHHHHHhh-cC--Ccch-hHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLDL-QG--SVWP-LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~l-~~--sp~~-l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|.++.+.++++. +. +|.. .+-+.|+| +.||.|||+||.
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~ 85 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSE 85 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 44699999999999886 33 3421 24555666 899999999976
No 3
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=50.82 E-value=3.2 Score=32.31 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.3
Q ss_pred eeecCC
Q 024213 59 TIEIPG 64 (271)
Q Consensus 59 tie~sg 64 (271)
++.|.+
T Consensus 79 sL~I~~ 84 (135)
T 1p4b_L 79 ALTITG 84 (135)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 333333
No 4
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=50.00 E-value=3.6 Score=33.05 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=6.0
Q ss_pred CceeecCCcccc
Q 024213 57 PKTIEIPGKITE 68 (271)
Q Consensus 57 ~~tie~sg~it~ 68 (271)
.+++.|.+-..+
T Consensus 81 ~~sL~I~~lq~~ 92 (149)
T 3u6r_H 81 TAYMELSSLRSE 92 (149)
T ss_dssp EEEEEECSCCGG
T ss_pred EEEEEECCCChh
Confidence 455555554433
No 5
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=41.09 E-value=17 Score=32.28 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHcCCCHHHHHHHHhhcC-C--cc-hhHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLDLQG-S--VW-PLGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~l~~-s--p~-~l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|+++.+.++.+.-. . |. =.+-+.|+| +.||.|||+|+.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~ 79 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 79 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHH
Confidence 3457788877777777532 2 21 124556666 899999999965
No 6
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=40.98 E-value=28 Score=30.92 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=30.4
Q ss_pred HHHcCCCHHHHHHHHhhcCCc-ch---hHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLDLQGSV-WP---LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~l~~sp-~~---l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|+++.+.++.+.-... .| .+-+.|+| +.||.|||+|+.
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~ 76 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChH
Confidence 345999999999988853322 11 24556666 899999999965
No 7
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=39.72 E-value=17 Score=33.00 Aligned_cols=43 Identities=5% Similarity=-0.133 Sum_probs=30.1
Q ss_pred HHHcCCCHHHHHHHHhhc-C-Ccc-hhHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLDLQ-G-SVW-PLGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~l~-~-sp~-~l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|+++.+.++++.- . .|. =.+-+.|+| +.||.|||+|+.
T Consensus 39 ~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~ 86 (243)
T 2zzd_C 39 IEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGV 86 (243)
T ss_dssp HHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChH
Confidence 556889998888887752 2 231 125566666 899999999954
No 8
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=37.73 E-value=17 Score=32.40 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=30.2
Q ss_pred HHcCCCHHHHHHHHh-hcCC--cc-hhHHHHHHh--hhhHHHHhcCCc
Q 024213 146 KTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 146 ~~g~vs~a~L~rfl~-l~~s--p~-~l~~L~r~~--~g~r~RlLADP~ 187 (271)
+.|.|.++.+..|.+ ++.. |. =.+-+.|+| +.||.|||+|+.
T Consensus 22 eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 22 ELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 459999999988887 3322 21 135566777 899999999974
No 9
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=31.91 E-value=29 Score=32.61 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=5.3
Q ss_pred eeEeecccCC
Q 024213 29 VFLSLRHSTA 38 (271)
Q Consensus 29 ~~~~~~~s~~ 38 (271)
.|++|.+-..
T Consensus 147 aFV~F~~~e~ 156 (437)
T 3pgw_S 147 AFIEYEHERD 156 (437)
T ss_pred EEEeeccHHH
Confidence 5666654433
No 10
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=29.46 E-value=15 Score=38.05 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 024213 89 SPGGGGGGGGDSGGGGGDG 107 (271)
Q Consensus 89 ~~~~ggg~~g~gggG~g~g 107 (271)
..||||++||+||||||-|
T Consensus 204 a~gggg~gg~gg~g~~GVG 222 (736)
T 3ng9_A 204 ASGGGAPMADNNEGADGVG 222 (736)
T ss_dssp -------------CCCCTT
T ss_pred ccCCCcCCCCCCCCCCccc
No 11
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=25.32 E-value=17 Score=31.61 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=3.8
Q ss_pred ceeecCCcc
Q 024213 58 KTIEIPGKI 66 (271)
Q Consensus 58 ~tie~sg~i 66 (271)
-.|.|.|++
T Consensus 97 s~V~VeGrL 105 (193)
T 3pgz_A 97 SKIYIEGQL 105 (193)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 334444444
No 12
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=21.75 E-value=73 Score=29.91 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=3.2
Q ss_pred ceeeEe
Q 024213 27 TTVFLS 32 (271)
Q Consensus 27 ~~~~~~ 32 (271)
++||+.
T Consensus 103 ~~lfV~ 108 (437)
T 3pgw_S 103 KTLFVA 108 (437)
T ss_pred CEEEEe
Confidence 455554
Done!