Query 024213
Match_columns 271
No_of_seqs 99 out of 127
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:20:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 68.8 1.9 0.00014 36.2 3.8 43 145-187 27-75 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 64.2 2.5 0.00018 35.5 3.7 43 145-187 28-76 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 49.7 8.4 0.00061 32.0 4.5 42 146-187 23-70 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 41.4 2.9 0.00021 28.4 0.3 29 168-196 28-56 (57)
5 d1b0na1 a.34.1.1 (A:74-108) Si 26.7 16 0.0012 22.6 1.9 21 142-163 10-30 (35)
6 d1or7a1 a.4.13.2 (A:120-187) S 19.3 52 0.0038 21.0 3.6 62 120-182 2-66 (68)
7 d1udxa1 b.117.1.1 (A:1-156) Ob 18.0 39 0.0029 26.1 3.1 7 81-87 12-18 (156)
8 d1lnza1 b.117.1.1 (A:1-157) Ob 16.5 40 0.0029 26.0 2.8 7 81-87 12-18 (157)
9 d2fbqa2 a.121.1.1 (A:81-214) T 14.9 1.4E+02 0.01 21.4 5.6 55 152-210 11-67 (134)
10 d1rp3a2 a.4.13.2 (A:164-234) S 14.0 1.4E+02 0.01 18.5 4.9 59 123-182 8-69 (71)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=68.75 E-value=1.9 Score=36.20 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHcCCCHHHHHHHHh-hcCC--cch-hHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLD-LQGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~-l~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|+++.+.+.++ ++.. |.. .+-+.|+| +.||.|||+|+.
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 4569999999999998 4443 321 25667777 899999999964
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=64.22 E-value=2.5 Score=35.47 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHcCCCHHHHHHHHhh-cC--Ccch-hHHHHHHh--hhhHHHHhcCCc
Q 024213 145 AKTVGIRKMFLLRYLDL-QG--SVWP-LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 145 a~~g~vs~a~L~rfl~l-~~--sp~~-l~~L~r~~--~g~r~RlLADP~ 187 (271)
++.|.|+++.+.++++. +. .|.. .+-+.|+| +.||.|||+|+.
T Consensus 28 ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 45699999999999984 33 2321 25566777 899999999964
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=49.68 E-value=8.4 Score=31.98 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=30.5
Q ss_pred HHcCCCHHHHHHHHhh-cCC--cch-hHHHHHHh--hhhHHHHhcCCc
Q 024213 146 KTVGIRKMFLLRYLDL-QGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (271)
Q Consensus 146 ~~g~vs~a~L~rfl~l-~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (271)
+.|.|+++.+.++++. +.. |.. .+-+.|+| +.||.|||+|+.
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 4599999999998874 444 321 25566666 899999999965
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.43 E-value=2.9 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.8
Q ss_pred hHHHHHHhhhhHHHHhcCCcchhhhhhhh
Q 024213 168 LGFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (271)
Q Consensus 168 l~~L~r~~~g~r~RlLADP~FlfKl~~E~ 196 (271)
+-.|+.+++-+|+.|++||.-...+..|.
T Consensus 28 le~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 45556667999999999998656666653
No 5
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.67 E-value=16 Score=22.56 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.0
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC
Q 024213 142 MEAAKTVGIRKMFLLRYLDLQG 163 (271)
Q Consensus 142 ~~Aa~~g~vs~a~L~rfl~l~~ 163 (271)
++|... +||..|...||+.++
T Consensus 10 keAM~S-GvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAMTS-GVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHc-cCCHHHHHHHHHHHH
Confidence 445544 499999999999875
No 6
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=19.31 E-value=52 Score=20.97 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHhcCCCchHHHHHHHHH---cCCCHHHHHHHHhhcCCcchhHHHHHHhhhhHHHH
Q 024213 120 ILKFEEVMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (271)
Q Consensus 120 ll~~~eVl~ea~r~~~sLPaDl~~Aa~~---g~vs~a~L~rfl~l~~sp~~l~~L~r~~~g~r~Rl 182 (271)
++-.+|..+...+-...||..-++++.+ .+.+-..+-+-+.+..+.. -..+.|+...+|..|
T Consensus 2 ~l~~~e~~~~l~~~l~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv-~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 2 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV-RSRIFRAREAIDNKV 66 (68)
T ss_dssp EEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHH-HHHHHHHHHHHHHHc
Confidence 3455677777788888899999998887 6677777777777766542 345555555555543
No 7
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.96 E-value=39 Score=26.13 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 024213 81 GGDGGAG 87 (271)
Q Consensus 81 ~G~G~~G 87 (271)
+|+||+|
T Consensus 12 ~G~GG~G 18 (156)
T d1udxa1 12 AGRGGDG 18 (156)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 4555554
No 8
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=16.47 E-value=40 Score=26.05 Aligned_cols=7 Identities=86% Similarity=1.778 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 024213 81 GGDGGAG 87 (271)
Q Consensus 81 ~G~G~~G 87 (271)
+|.||+|
T Consensus 12 aG~GG~G 18 (157)
T d1lnza1 12 GGDGGNG 18 (157)
T ss_dssp CCCCCCC
T ss_pred ECCCCCc
Confidence 4455444
No 9
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.95 E-value=1.4e+02 Score=21.40 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCc-chhHHHHHHhhhhHHHHhcCCc-chhhhhhhhhhhhhhhhhHHHhh
Q 024213 152 KMFLLRYLDLQGSV-WPLGFLMRYCFMLRDRMLADPS-FLFKVGTEIVIDSCCATLAEFQK 210 (271)
Q Consensus 152 ~a~L~rfl~l~~sp-~~l~~L~r~~~g~r~RlLADP~-FlfKl~~E~~i~v~~~~~aE~~~ 210 (271)
.+.+.-+|++..+. .-.+++ -.+..|..+||+ ++-|+..|+.-.+.......+++
T Consensus 11 ~a~~~p~l~~~~~~~~~~~~f----~rLl~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~ 67 (134)
T d2fbqa2 11 HLLVSQAMAVKPRSGNDLSIF----MRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNE 67 (134)
T ss_dssp HHHHHHHHHSCCSSSCHHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCchhHH----HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678886543 222333 457789999997 78888888888888888777776
No 10
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=14.05 E-value=1.4e+02 Score=18.45 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHH---cCCCHHHHHHHHhhcCCcchhHHHHHHhhhhHHHH
Q 024213 123 FEEVMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (271)
Q Consensus 123 ~~eVl~ea~r~~~sLPaDl~~Aa~~---g~vs~a~L~rfl~l~~sp~~l~~L~r~~~g~r~Rl 182 (271)
.++..+.+.+-...||..-++++.+ .+.+-..+-.-|.+..+. .-..+.|....+|..|
T Consensus 8 ~~e~~~~l~~~l~~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~t-v~~~~~ra~~~Lr~~L 69 (71)
T d1rp3a2 8 KRELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSR-VSQLKAKALERLREML 69 (71)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhHhCCHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHc
Confidence 4566777788899999999999887 667877777777766643 2445555555555543
Done!