BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024214
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20
PE=2 SV=1
Length = 374
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/270 (48%), Positives = 166/270 (61%), Gaps = 20/270 (7%)
Query: 1 MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
MA F L T+ S H A T + L P+ SS+ + +R R +
Sbjct: 1 MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49
Query: 61 ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
A+ + S +FTWDDV + EY +SSDL G+FEKI CNRGSE EF PF+IE+Q
Sbjct: 50 AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106
Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
+ GY H RF +LR++ D+F +S N R +V LN L+ ++RTR V +VIK L
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166
Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
++ +IP I+NELYPV +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226
Query: 239 RSQVKSTYPGMLDILAGGGL----VCNSNL 264
RS KSTYPGMLD L GGL C NL
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNL 256
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24
PE=2 SV=1
Length = 365
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 9/205 (4%)
Query: 54 RSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFF 113
R L V+T +S +FTW+DVF S+ EY P +SSDL G+ EK+ CNRG E EF
Sbjct: 42 RVLSVETVPLS----PSFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFI 97
Query: 114 PFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEV 173
PF+IE+Q+ GY H F +LR ++D+F +S ++G HV LN L +ERTR V V
Sbjct: 98 PFVIEEQIVGYIHKGFTKYLRDFNDIFTFS-----QYGGHVTLNMMLDKPEERTRAVAHV 152
Query: 174 IKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKF 233
IK L + +IP I+NELYPV +F +P FFS++RAAAPYFG+K YA+ +NGYVE+DGQKF
Sbjct: 153 IKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKF 212
Query: 234 LWIGKRSQVKSTYPGMLDILAGGGL 258
LWIGKRS KSTYPG LD L GGL
Sbjct: 213 LWIGKRSLAKSTYPGKLDHLVAGGL 237
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1
Length = 342
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 152 SHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQ---NELYPVASTFGSPIFFSLDRA 208
S +L K + D R ++ ++ + + E + ++ NE Y V + ++RA
Sbjct: 89 SRHELRFKSEDFDHRNNLIDQLARKMYLESSLSGVKGWRNEKYAVW--VNKKPYVLVERA 146
Query: 209 AAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 258
A GI Y + +NGYV K + W+ +RS+ K T+P MLD + GGL
Sbjct: 147 VAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGL 198
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 151 GSHVKLNSKLKTADERTRVVGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDR 207
G ++++N+ T ++RT ++ +V++ + +NELY V P+ +++R
Sbjct: 68 GEYIEINAS--TFEKRTDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVL-AVER 124
Query: 208 AAAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 258
FG + V Y+ K+ +W+ +RS K T+P LD GG+
Sbjct: 125 GGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGI 177
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 156 LNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFS 204
LN KL+ D RT IK + + +L P EL+ + +G P+ ++
Sbjct: 337 LNLKLQIPDNRTECAQNFIKTIIQAKLTPQQYCELFSLQKHWGHPVLYN 385
>sp|Q9RY71|Y079_DEIRA Nudix hydrolase DR_0079 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_0079 PE=1 SV=1
Length = 171
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 228 KDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 258
++ Q LWI +RS KS +P LD+ GG +
Sbjct: 42 RNSQGQLWIPRRSPSKSLFPNALDVSVGGAV 72
>sp|P81248|YF7B_METJA Uncharacterized protein MJ1572.1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1572.1 PE=4 SV=1
Length = 112
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 113 FPFIIEDQVAGYTHNRFASHLRKYDDV-FIYSGNNGG 148
F +I ++ GY++ RF +L K V FIY GN GG
Sbjct: 15 FTYIDSREIGGYSYERFNRNLFKDKAVIFIYDGNEGG 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,446,409
Number of Sequences: 539616
Number of extensions: 4138474
Number of successful extensions: 9046
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9037
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)