Query 024216
Match_columns 270
No_of_seqs 244 out of 2204
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 2E-39 4.2E-44 299.6 18.5 212 59-270 5-216 (320)
2 COG2897 SseA Rhodanese-related 100.0 1.4E-36 3E-41 274.3 15.4 175 73-270 8-182 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 1.7E-32 3.7E-37 249.0 18.0 175 75-270 4-179 (281)
4 PRK09629 bifunctional thiosulf 100.0 3.1E-32 6.7E-37 269.8 18.6 169 72-270 5-173 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 7.7E-31 1.7E-35 233.2 12.9 177 75-270 4-183 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 4E-27 8.7E-32 192.7 13.0 119 78-197 1-137 (138)
7 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.5E-24 3.2E-29 172.7 13.1 122 77-200 1-122 (122)
8 cd01449 TST_Repeat_2 Thiosulfa 99.9 4.2E-23 9.1E-28 163.1 10.8 107 78-198 1-118 (118)
9 cd01519 RHOD_HSP67B2 Member of 99.9 1.3E-22 2.8E-27 157.2 10.1 104 79-198 2-106 (106)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 2.5E-22 5.5E-27 168.6 11.8 118 75-203 35-162 (162)
11 PLN02723 3-mercaptopyruvate su 99.9 9.4E-22 2E-26 181.8 12.2 129 74-207 188-319 (320)
12 cd01533 4RHOD_Repeat_2 Member 99.9 1.7E-21 3.7E-26 152.4 11.4 98 76-200 10-109 (109)
13 cd01520 RHOD_YbbB Member of th 99.9 3.6E-22 7.7E-27 161.1 7.4 109 78-198 1-126 (128)
14 cd01525 RHOD_Kc Member of the 99.8 6.1E-21 1.3E-25 147.7 10.0 102 78-197 1-104 (105)
15 cd01518 RHOD_YceA Member of th 99.8 6.7E-21 1.5E-25 146.9 9.9 99 76-197 2-100 (101)
16 smart00450 RHOD Rhodanese Homo 99.8 2.3E-20 5E-25 140.7 10.3 99 89-202 2-100 (100)
17 cd01527 RHOD_YgaP Member of th 99.8 2.5E-20 5.5E-25 143.0 10.6 97 77-203 3-99 (99)
18 PRK11493 sseA 3-mercaptopyruva 99.8 2.1E-20 4.6E-25 169.7 11.3 118 74-206 151-280 (281)
19 PRK09629 bifunctional thiosulf 99.8 3.1E-20 6.7E-25 184.4 12.8 121 73-207 144-273 (610)
20 cd01521 RHOD_PspE2 Member of t 99.8 3.6E-20 7.9E-25 145.3 10.2 100 76-203 8-110 (110)
21 PRK00162 glpE thiosulfate sulf 99.8 6.1E-20 1.3E-24 143.3 11.3 102 76-206 5-106 (108)
22 cd01447 Polysulfide_ST Polysul 99.8 3E-20 6.6E-25 142.8 9.0 102 78-200 1-103 (103)
23 PF00581 Rhodanese: Rhodanese- 99.8 5.8E-20 1.2E-24 142.6 9.9 107 79-199 1-113 (113)
24 cd01526 RHOD_ThiF Member of th 99.8 9.4E-20 2E-24 145.6 9.8 110 74-202 6-117 (122)
25 cd01534 4RHOD_Repeat_3 Member 99.8 8.8E-20 1.9E-24 139.2 8.6 93 78-198 1-95 (95)
26 PLN02160 thiosulfate sulfurtra 99.8 3.8E-19 8.3E-24 145.2 12.7 114 76-207 15-130 (136)
27 COG2897 SseA Rhodanese-related 99.8 3.1E-19 6.8E-24 161.6 13.0 121 73-207 153-284 (285)
28 cd01528 RHOD_2 Member of the R 99.8 4.7E-19 1E-23 136.6 10.7 94 78-198 2-98 (101)
29 cd01529 4RHOD_Repeats Member o 99.8 5.6E-19 1.2E-23 135.0 9.6 94 80-198 3-96 (96)
30 cd01524 RHOD_Pyr_redox Member 99.8 1.3E-18 2.8E-23 131.5 10.5 89 78-197 1-89 (90)
31 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.1E-18 2.4E-23 132.6 10.2 91 78-197 2-95 (96)
32 cd01535 4RHOD_Repeat_4 Member 99.8 1.7E-18 3.7E-23 142.8 11.9 97 83-208 2-99 (145)
33 cd01530 Cdc25 Cdc25 phosphatas 99.8 7E-19 1.5E-23 140.8 9.1 98 77-197 3-120 (121)
34 cd01523 RHOD_Lact_B Member of 99.8 1.7E-18 3.6E-23 133.2 9.9 98 78-197 1-99 (100)
35 cd01522 RHOD_1 Member of the R 99.8 1.7E-18 3.7E-23 137.5 8.8 103 78-199 1-105 (117)
36 PRK11784 tRNA 2-selenouridine 99.8 5.2E-18 1.1E-22 158.1 11.7 156 79-270 4-176 (345)
37 cd01532 4RHOD_Repeat_1 Member 99.8 3.1E-18 6.7E-23 130.2 8.1 87 86-198 5-92 (92)
38 PRK08762 molybdopterin biosynt 99.7 7.8E-18 1.7E-22 158.9 11.5 105 76-208 3-107 (376)
39 cd01531 Acr2p Eukaryotic arsen 99.7 6.9E-18 1.5E-22 132.8 9.1 100 76-199 2-112 (113)
40 TIGR03167 tRNA_sel_U_synt tRNA 99.7 1.5E-17 3.4E-22 152.9 12.8 143 91-269 2-161 (311)
41 cd01446 DSP_MapKP N-terminal r 99.7 3.8E-18 8.2E-23 137.9 7.1 109 77-198 1-126 (132)
42 KOG1530 Rhodanese-related sulf 99.7 1.7E-17 3.7E-22 132.0 10.0 114 75-204 22-135 (136)
43 cd00158 RHOD Rhodanese Homolog 99.7 8.3E-18 1.8E-22 124.9 7.3 88 83-197 2-89 (89)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2.8E-17 6E-22 129.5 8.5 98 77-197 3-112 (113)
45 PRK00142 putative rhodanese-re 99.7 2.5E-16 5.5E-21 145.2 11.8 101 74-198 110-211 (314)
46 PRK01415 hypothetical protein; 99.7 4.1E-16 8.8E-21 138.9 10.8 103 74-200 110-213 (247)
47 PRK10287 thiosulfate:cyanide s 99.7 5.9E-16 1.3E-20 120.8 9.8 81 90-198 19-99 (104)
48 TIGR02981 phageshock_pspE phag 99.7 6.1E-16 1.3E-20 120.1 9.6 81 90-198 17-97 (101)
49 COG0607 PspE Rhodanese-related 99.7 6.6E-16 1.4E-20 119.7 9.5 99 81-206 10-109 (110)
50 PRK07878 molybdopterin biosynt 99.6 1.3E-15 2.7E-20 144.6 11.0 101 74-201 285-386 (392)
51 PRK05320 rhodanese superfamily 99.6 3.9E-15 8.5E-20 133.7 11.0 100 76-198 110-215 (257)
52 PRK05597 molybdopterin biosynt 99.6 9.1E-15 2E-19 137.1 9.5 95 76-199 261-355 (355)
53 PRK07411 hypothetical protein; 99.5 1.6E-14 3.4E-19 137.1 9.9 102 76-202 282-385 (390)
54 PRK05600 thiamine biosynthesis 99.3 1.8E-12 3.9E-17 122.2 7.8 94 77-194 272-369 (370)
55 KOG1529 Mercaptopyruvate sulfu 99.2 2.5E-11 5.3E-16 108.8 8.2 116 77-198 157-275 (286)
56 COG1054 Predicted sulfurtransf 99.1 3.3E-10 7.1E-15 102.2 7.0 101 75-198 112-212 (308)
57 PRK01269 tRNA s(4)U8 sulfurtra 98.9 2.3E-09 4.9E-14 104.6 8.1 72 90-190 406-481 (482)
58 KOG3772 M-phase inducer phosph 98.9 1.8E-09 4E-14 98.7 6.1 99 76-199 156-276 (325)
59 KOG2017 Molybdopterin synthase 98.6 3.6E-08 7.8E-13 90.7 4.7 102 75-199 316-419 (427)
60 COG5105 MIH1 Mitotic inducer, 98.2 5.3E-06 1.2E-10 75.7 7.1 98 76-198 242-357 (427)
61 PRK00142 putative rhodanese-re 97.5 1.8E-05 3.9E-10 73.3 -0.5 42 76-127 14-55 (314)
62 KOG1717 Dual specificity phosp 96.8 0.0012 2.5E-08 59.3 3.4 106 77-199 5-124 (343)
63 PHA00738 putative HTH transcri 92.2 0.081 1.8E-06 41.3 1.7 31 17-47 40-70 (108)
64 PF04273 DUF442: Putative phos 92.0 0.84 1.8E-05 35.8 7.2 85 77-179 14-106 (110)
65 KOG3636 Uncharacterized conser 90.5 1 2.2E-05 43.7 7.4 102 77-197 308-427 (669)
66 COG2603 Predicted ATPase [Gene 90.5 0.75 1.6E-05 42.2 6.2 28 90-126 14-41 (334)
67 KOG1530 Rhodanese-related sulf 89.1 0.24 5.2E-06 40.1 1.8 27 244-270 23-49 (136)
68 TIGR01244 conserved hypothetic 87.9 4.4 9.6E-05 32.6 8.6 54 142-204 75-129 (135)
69 PRK10141 DNA-binding transcrip 87.0 0.34 7.4E-06 38.5 1.5 29 19-47 46-74 (117)
70 TIGR03167 tRNA_sel_U_synt tRNA 86.4 2.3 5E-05 39.4 6.8 66 75-167 135-206 (311)
71 KOG1093 Predicted protein kina 86.1 0.17 3.7E-06 50.1 -0.8 94 76-195 622-717 (725)
72 COG3453 Uncharacterized protei 83.4 4.6 0.0001 32.4 6.3 84 78-174 16-103 (130)
73 TIGR03865 PQQ_CXXCW PQQ-depend 80.4 2.2 4.7E-05 35.6 3.7 31 239-269 31-61 (162)
74 PLN02918 pyridoxine (pyridoxam 74.9 12 0.00027 37.4 7.7 31 158-189 136-168 (544)
75 PF09992 DUF2233: Predicted pe 73.0 2.7 5.8E-05 34.9 2.3 46 152-197 95-144 (170)
76 PF13350 Y_phosphatase3: Tyros 67.9 28 0.00061 28.6 7.4 42 142-184 110-152 (164)
77 cd00127 DSPc Dual specificity 67.7 14 0.00031 28.9 5.4 37 146-183 71-109 (139)
78 COG2453 CDC14 Predicted protei 61.7 14 0.00031 31.1 4.5 42 144-186 93-136 (180)
79 TIGR00640 acid_CoA_mut_C methy 56.2 76 0.0017 25.4 7.7 60 139-202 39-107 (132)
80 PRK12550 shikimate 5-dehydroge 55.9 29 0.00063 31.5 5.8 49 143-193 108-156 (272)
81 PRK05600 thiamine biosynthesis 54.0 8.6 0.00019 36.5 2.1 26 245-270 272-297 (370)
82 PRK01415 hypothetical protein; 52.4 11 0.00024 33.8 2.4 28 243-270 111-138 (247)
83 cd02071 MM_CoA_mut_B12_BD meth 49.0 1.3E+02 0.0027 23.5 8.0 58 140-201 37-103 (122)
84 PLN02727 NAD kinase 47.8 73 0.0016 34.1 7.7 81 77-169 268-353 (986)
85 PF05706 CDKN3: Cyclin-depende 47.6 24 0.00052 29.8 3.5 29 154-182 130-159 (168)
86 smart00195 DSPc Dual specifici 47.4 48 0.001 26.0 5.2 38 146-184 68-107 (138)
87 PF13242 Hydrolase_like: HAD-h 44.5 47 0.001 23.4 4.3 47 140-192 5-52 (75)
88 COG0162 TyrS Tyrosyl-tRNA synt 43.4 33 0.00071 33.1 4.2 55 138-199 17-80 (401)
89 COG0169 AroE Shikimate 5-dehyd 43.0 59 0.0013 29.8 5.6 51 142-194 108-161 (283)
90 TIGR02190 GlrX-dom Glutaredoxi 41.0 63 0.0014 23.0 4.5 31 154-184 4-34 (79)
91 PF03853 YjeF_N: YjeF-related 39.7 87 0.0019 26.0 5.8 38 150-188 18-57 (169)
92 PRK12749 quinate/shikimate deh 37.5 80 0.0017 28.8 5.6 48 143-192 109-157 (288)
93 TIGR01796 CM_mono_aroH monofun 36.2 36 0.00078 27.1 2.7 50 142-191 23-74 (117)
94 COG2185 Sbm Methylmalonyl-CoA 36.1 1.1E+02 0.0025 25.1 5.7 54 136-193 46-102 (143)
95 PTZ00393 protein tyrosine phos 36.0 86 0.0019 28.1 5.4 48 137-184 148-198 (241)
96 TIGR02804 ExbD_2 TonB system t 35.4 1.8E+02 0.0038 22.7 6.7 47 141-189 70-118 (121)
97 COG0062 Uncharacterized conser 35.2 1.1E+02 0.0025 26.5 5.9 42 148-190 40-83 (203)
98 cd05212 NAD_bind_m-THF_DH_Cycl 35.0 1.5E+02 0.0033 24.0 6.4 48 141-190 11-59 (140)
99 PRK09775 putative DNA-binding 33.1 28 0.00061 33.9 2.0 30 18-49 28-57 (442)
100 TIGR02189 GlrX-like_plant Glut 33.0 81 0.0018 23.8 4.2 35 156-190 6-41 (99)
101 PRK07878 molybdopterin biosynt 32.8 29 0.00064 33.1 2.1 29 242-270 285-314 (392)
102 TIGR01809 Shik-DH-AROM shikima 32.2 1.1E+02 0.0023 27.7 5.6 49 143-193 108-159 (282)
103 PRK11070 ssDNA exonuclease Rec 32.2 65 0.0014 32.6 4.5 52 137-189 50-104 (575)
104 PF01488 Shikimate_DH: Shikima 32.0 1.2E+02 0.0025 24.1 5.2 40 156-197 11-50 (135)
105 cd05311 NAD_bind_2_malic_enz N 31.9 1.1E+02 0.0023 26.8 5.4 46 145-192 12-60 (226)
106 PRK12361 hypothetical protein; 31.9 1.7E+02 0.0038 29.0 7.4 39 140-178 156-198 (547)
107 PF04343 DUF488: Protein of un 31.9 1E+02 0.0022 24.0 4.7 20 79-98 1-21 (122)
108 PF07879 PHB_acc_N: PHB/PHA ac 31.9 47 0.001 23.5 2.4 27 243-269 17-44 (64)
109 cd03029 GRX_hybridPRX5 Glutare 31.8 94 0.002 21.4 4.1 26 159-184 2-27 (72)
110 PF03610 EIIA-man: PTS system 31.6 2.1E+02 0.0046 21.8 6.5 46 143-191 45-90 (116)
111 PRK05852 acyl-CoA synthetase; 31.4 1.1E+02 0.0024 29.6 5.9 52 142-195 53-104 (534)
112 COG4822 CbiK Cobalamin biosynt 31.3 1.3E+02 0.0028 26.8 5.5 46 143-189 121-173 (265)
113 COG2085 Predicted dinucleotide 30.8 3.2E+02 0.007 24.0 8.0 30 157-186 147-176 (211)
114 PF12840 HTH_20: Helix-turn-he 30.7 20 0.00044 24.4 0.5 22 19-40 40-61 (61)
115 PRK05320 rhodanese superfamily 30.0 32 0.00068 31.0 1.7 26 245-270 111-142 (257)
116 cd02066 GRX_family Glutaredoxi 29.7 1.1E+02 0.0025 20.0 4.2 26 159-184 1-26 (72)
117 PRK07411 hypothetical protein; 29.0 33 0.00071 32.7 1.7 27 244-270 282-310 (390)
118 PRK14027 quinate/shikimate deh 28.9 1.4E+02 0.003 27.2 5.7 49 143-193 112-161 (283)
119 TIGR00762 DegV EDD domain prot 28.7 1.5E+02 0.0032 26.7 5.8 57 136-193 58-116 (275)
120 cd02976 NrdH NrdH-redoxin (Nrd 27.8 1.3E+02 0.0027 19.9 4.2 26 159-184 1-26 (73)
121 PRK11024 colicin uptake protei 27.5 2.5E+02 0.0054 22.5 6.5 50 141-190 86-138 (141)
122 TIGR00644 recJ single-stranded 27.5 1.3E+02 0.0029 29.9 5.7 50 138-189 36-88 (539)
123 COG0640 ArsR Predicted transcr 27.1 45 0.00098 23.6 1.8 31 17-47 53-83 (110)
124 cd01486 Apg7 Apg7 is an E1-lik 27.1 2.4E+02 0.0051 26.3 6.8 65 160-227 2-69 (307)
125 PTZ00242 protein tyrosine phos 27.0 3.6E+02 0.0079 22.3 9.4 19 155-173 96-115 (166)
126 TIGR02355 moeB molybdopterin s 26.6 2.1E+02 0.0046 25.2 6.4 68 157-226 24-91 (240)
127 PLN03049 pyridoxine (pyridoxam 26.3 1.6E+02 0.0035 28.9 6.0 31 158-189 60-92 (462)
128 PLN02645 phosphoglycolate phos 26.0 1.5E+02 0.0033 27.0 5.6 86 63-184 1-87 (311)
129 PRK13382 acyl-CoA synthetase; 25.6 1.6E+02 0.0035 28.6 5.9 51 142-194 78-128 (537)
130 TIGR03121 one_C_dehyd_A formyl 25.4 1.3E+02 0.0028 30.3 5.2 28 170-198 164-193 (556)
131 TIGR02801 tolR TolR protein. T 25.4 2.8E+02 0.0061 21.6 6.3 47 143-189 78-127 (129)
132 PF13399 LytR_C: LytR cell env 25.2 1.1E+02 0.0024 22.2 3.7 32 157-188 3-35 (90)
133 cd00079 HELICc Helicase superf 25.2 2.6E+02 0.0056 20.7 6.0 48 143-193 15-62 (131)
134 KOG0333 U5 snRNP-like RNA heli 25.1 1.3E+02 0.0028 30.3 5.0 56 137-194 497-552 (673)
135 COG1054 Predicted sulfurtransf 24.9 78 0.0017 29.3 3.3 26 243-268 112-137 (308)
136 cd01078 NAD_bind_H4MPT_DH NADP 24.7 2.5E+02 0.0053 23.4 6.2 49 143-193 13-62 (194)
137 smart00226 LMWPc Low molecular 24.1 1.1E+02 0.0023 24.2 3.6 37 160-196 1-37 (140)
138 PF01451 LMWPc: Low molecular 24.1 48 0.001 26.2 1.6 37 160-196 1-41 (138)
139 PRK09426 methylmalonyl-CoA mut 24.1 2.4E+02 0.0051 29.4 6.9 52 138-193 618-672 (714)
140 cd03027 GRX_DEP Glutaredoxin ( 23.9 1.5E+02 0.0033 20.3 4.1 26 159-184 2-27 (73)
141 COG0513 SrmB Superfamily II DN 23.6 1.6E+02 0.0034 29.2 5.4 49 144-194 260-308 (513)
142 PF00782 DSPc: Dual specificit 23.6 1.1E+02 0.0024 23.6 3.6 42 142-184 59-102 (133)
143 KOG2015 NEDD8-activating compl 23.4 2.1E+02 0.0045 27.2 5.7 53 137-198 27-79 (422)
144 PRK13391 acyl-CoA synthetase; 23.2 1.9E+02 0.0041 27.7 5.8 50 142-193 34-83 (511)
145 TIGR01656 Histidinol-ppas hist 23.1 1.3E+02 0.0028 24.0 4.0 47 138-190 100-146 (147)
146 KOG3062 RNA polymerase II elon 23.0 2.9E+02 0.0063 24.9 6.3 33 159-191 2-39 (281)
147 PRK08276 long-chain-fatty-acid 22.7 2E+02 0.0044 27.3 5.9 50 142-193 21-70 (502)
148 cd01304 FMDH_A Formylmethanofu 22.7 1.6E+02 0.0034 29.6 5.2 28 170-198 160-189 (541)
149 PRK11267 biopolymer transport 22.6 3.6E+02 0.0077 21.6 6.5 49 142-190 83-134 (141)
150 PRK07514 malonyl-CoA synthase; 22.3 2.2E+02 0.0047 27.0 6.0 50 142-193 38-87 (504)
151 PF08503 DapH_N: Tetrahydrodip 22.3 20 0.00043 26.8 -0.9 53 142-198 3-55 (83)
152 PRK02458 ribose-phosphate pyro 22.2 5.6E+02 0.012 23.8 8.5 87 75-190 110-199 (323)
153 PF00501 AMP-binding: AMP-bind 22.2 2.2E+02 0.0048 26.1 6.0 48 142-191 31-78 (417)
154 TIGR01923 menE O-succinylbenzo 22.2 2.2E+02 0.0047 26.3 5.9 51 142-194 9-59 (436)
155 KOG3109 Haloacid dehalogenase- 22.0 2.3E+02 0.0049 25.3 5.4 47 139-190 160-206 (244)
156 PRK09029 O-succinylbenzoic aci 21.8 2.2E+02 0.0047 26.8 5.9 53 142-196 38-90 (458)
157 TIGR00197 yjeF_nterm yjeF N-te 21.8 2.5E+02 0.0054 24.1 5.7 35 155-190 43-79 (205)
158 PLN03050 pyridoxine (pyridoxam 21.7 1.4E+02 0.0031 26.6 4.3 31 158-189 61-93 (246)
159 TIGR03372 putres_am_tran putre 21.3 1.6E+02 0.0034 28.6 4.8 55 142-198 119-178 (442)
160 PRK12549 shikimate 5-dehydroge 21.3 2.3E+02 0.0049 25.7 5.6 49 143-193 112-161 (284)
161 PRK13390 acyl-CoA synthetase; 21.2 2.1E+02 0.0045 27.3 5.7 42 142-184 34-75 (501)
162 KOG3456 NADH:ubiquinone oxidor 21.2 93 0.002 24.4 2.5 21 158-188 77-97 (120)
163 PRK13812 orotate phosphoribosy 21.1 3.7E+02 0.008 22.5 6.5 52 154-206 104-164 (176)
164 TIGR02262 benz_CoA_lig benzoat 20.7 2.4E+02 0.0052 26.9 6.0 50 142-193 40-89 (508)
165 TIGR01848 PHA_reg_PhaR polyhyd 20.7 93 0.002 24.3 2.5 27 243-269 17-44 (107)
166 cd03418 GRX_GRXb_1_3_like Glut 20.6 2.1E+02 0.0046 19.4 4.3 25 160-184 2-26 (75)
167 TIGR02316 propion_prpE propion 20.4 2.1E+02 0.0045 28.5 5.7 50 142-193 93-142 (628)
168 TIGR00365 monothiol glutaredox 20.2 1.9E+02 0.0042 21.5 4.2 29 156-184 10-43 (97)
169 PRK12548 shikimate 5-dehydroge 20.1 2.9E+02 0.0062 25.0 6.0 49 142-192 110-159 (289)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=2e-39 Score=299.58 Aligned_cols=212 Identities=86% Similarity=1.379 Sum_probs=186.9
Q ss_pred ccCCCCCccccCCCCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCC
Q 024216 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (270)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~ 138 (270)
.+.+.+.+++.+++++..+|+++||++++++++++|||+||.++...+++..+|..||||||+|+|++.+.+.....+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~ 84 (320)
T PLN02723 5 GSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHM 84 (320)
T ss_pred chhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCC
Confidence 56777888888888888999999999999888899999998766554444578999999999999998887776778899
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhh
Q 024216 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAA 218 (270)
Q Consensus 139 lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~ 218 (270)
+|+.++|+++|+++||+++++|||||+.|..+++|+||+|+++||++|++||||+.+|+.+|+|++++.+.+.+.++.++
T Consensus 85 lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~ 164 (320)
T PLN02723 85 LPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAA 164 (320)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccc
Confidence 99999999999999999999999999988878999999999999999999999999999999999988765555566677
Q ss_pred HHHHHHhhcCcccCCcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 219 SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
++.+++.|.++...+.+|..+++++++++.++|++++++++++|||+|+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~e 216 (320)
T PLN02723 165 SEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKAR 216 (320)
T ss_pred ccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCccc
Confidence 7888877776667788899999999999999999999887899999998754
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=274.34 Aligned_cols=175 Identities=43% Similarity=0.763 Sum_probs=158.6
Q ss_pred CCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 024216 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (270)
Q Consensus 73 ~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~ 152 (270)
+...+||++||.+++.+++++++|+|+..+... ...+|..||||||++++++.+.+....+++|+|++++|++.|+++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~--~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPD--DAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcc--hHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 346799999999999988888889987776643 268999999999999999987666666899999999999999999
Q ss_pred CCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhhcCcccC
Q 024216 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVG 232 (270)
Q Consensus 153 Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (270)
||++|++||+|++.+..+|+|+||+|+++||+||++||||+.+|+++|+|+++.++ ...
T Consensus 86 GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~---------------------~~~ 144 (285)
T COG2897 86 GIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP---------------------EPP 144 (285)
T ss_pred CCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC---------------------CCC
Confidence 99999999999999988999999999999999999999999999999999999764 356
Q ss_pred CcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 233 PTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
+..|..+++...+++.++++..++.+..+|||+|+++|
T Consensus 145 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~r 182 (285)
T COG2897 145 PTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPER 182 (285)
T ss_pred CccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHH
Confidence 78899999999999999999999999999999999875
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=1.7e-32 Score=248.98 Aligned_cols=175 Identities=39% Similarity=0.746 Sum_probs=151.3
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCC-CChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQR-NPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~-~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
..+|+++||++++.+++++|||+|+....... +...+|..||||||+|+|+..+.....+.++++|+.++|+++++++|
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 46899999999999888999999954322211 12578999999999999998877666667789999999999999999
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhhcCcccCC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (270)
|+++++||+||.++..+++++||+|+.+||+||++|+||+.+|.++|+|+++..+ .+.+
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~---------------------~~~~ 142 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV---------------------ELPE 142 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC---------------------CCCC
Confidence 9999999999998777799999999999999999999999999999999998764 2356
Q ss_pred cccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 234 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
.+|..+++++.++++++++..+++++.+|||+|+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e 179 (281)
T PRK11493 143 GEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAAR 179 (281)
T ss_pred CcccccCCccceecHHHHHHhhcCCCcEEEeCCCccc
Confidence 7788888889999999999888877899999999764
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=3.1e-32 Score=269.84 Aligned_cols=169 Identities=24% Similarity=0.374 Sum_probs=149.0
Q ss_pred CCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 024216 72 SPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (270)
Q Consensus 72 ~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (270)
.+...+||++||++++++++++|||+| +..+|..||||||+|+|++.+.......++++|+.++|++.|++
T Consensus 5 ~~~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~ 75 (610)
T PRK09629 5 TGLSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGE 75 (610)
T ss_pred ccCCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHH
Confidence 345679999999999998889999999 67899999999999999876544444567899999999999999
Q ss_pred cCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhhcCccc
Q 024216 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVV 231 (270)
Q Consensus 152 ~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (270)
+||+++++|||||+++...|+|+||+|+++||++|++||||+.+|+.+|+|++++.+. .
T Consensus 76 lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~---------------------~ 134 (610)
T PRK09629 76 LGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP---------------------V 134 (610)
T ss_pred cCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC---------------------C
Confidence 9999999999999988767999999999999999999999999999999999987641 2
Q ss_pred CCcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 232 GPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
.+++|....++..+++.++|++++++++++|||+|+++|
T Consensus 135 ~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~e 173 (610)
T PRK09629 135 AGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTE 173 (610)
T ss_pred CCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccc
Confidence 345677777888899999999999888899999999865
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.97 E-value=7.7e-31 Score=233.23 Aligned_cols=177 Identities=43% Similarity=0.781 Sum_probs=160.8
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi 154 (270)
+.+|+++|+++++++..++|||+.|+++...++...+|..-|||||++|+++.+.++..+.++|+|..+.|++.++.+|+
T Consensus 4 ~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi 83 (286)
T KOG1529|consen 4 DSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGV 83 (286)
T ss_pred ccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCC
Confidence 56899999999999988999999999988777778999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecC--CChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhhcCcccC
Q 024216 155 ENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVG 232 (270)
Q Consensus 155 ~~d~~VVvYc~--~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (270)
++++.+|||++ +|+.+|+|+||+|+.+||++|.+||||+.+|+++|+|++++.+. .+ ..
T Consensus 84 ~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~--------------~p-----~~ 144 (286)
T KOG1529|consen 84 DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE--------------TP-----YS 144 (286)
T ss_pred CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc--------------CC-----CC
Confidence 99999999999 78889999999999999999999999999999999999998741 00 13
Q ss_pred CcccccccCCccccCHHHHHHH-hhCCCcEEEccCCCCC
Q 024216 233 PTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKAR 270 (270)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~v~~~-~~~~~~~lIDaR~~~~ 270 (270)
+..|....+++++++++++..+ .+.++++++|+|+.+|
T Consensus 145 ~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~gr 183 (286)
T KOG1529|consen 145 PIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGR 183 (286)
T ss_pred CccchhhcchHHHHHHhhccccccccccceeeecccccc
Confidence 4556678899999999999987 7778899999999875
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.95 E-value=4e-27 Score=192.74 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=103.5
Q ss_pred ccHHHHHHhhC----CCCcEEEEeccCCCCCCCCChhhhhh------------CCCCCceecCcccccccCCCCCCCCCC
Q 024216 78 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (270)
Q Consensus 78 Is~~eL~~~l~----~~~~vIIDvR~~~~~~~~~~~~ey~~------------gHIPGAv~ip~~~l~~~~~~~~~~lp~ 141 (270)
||++||+++++ +++++|||+|+.+++. ++...+|.. ||||||+|+|+..+.+.+....+++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999998 4679999999765443 233478887 999999999998876666667789999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCC--ChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~--g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
.++|+++|+++||+++++||+||++ +...|+|+||+|+++||+||++||||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999975 4557999999999999999999999999996
No 7
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.92 E-value=1.5e-24 Score=172.70 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=103.2
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~ 156 (270)
+|++++|.+++.+++.+|||+|....+ .++..+|..||||||+|+|+..+.....+..+++++.++|++.+..+|+++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 589999999998877899999932111 011289999999999999998865443446789999999999999999999
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCC
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G 200 (270)
+++||+||++|...|++++++|+.+||++|++|+||+.+|.++|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999986556999999999999999999999999999875
No 8
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.89 E-value=4.2e-23 Score=163.10 Aligned_cols=107 Identities=27% Similarity=0.490 Sum_probs=94.1
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhh-----------CCCCCceecCcccccccCCCCCCCCCCHHHHH
Q 024216 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (270)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~-----------gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~ 146 (270)
||+++|.+++.+++++|||+| +..+|.. ||||||+|+|+.++.... +.++++++|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 588999999877678999999 5666655 999999999998765432 5788999999
Q ss_pred HHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 147 ~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
+.+..+|++++++||+||++|. .|.+++|.|+.+||++|++|+||+.+|.+
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSGV-TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999876 48999999999999999999999999973
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=1.3e-22 Score=157.21 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=92.0
Q ss_pred cHHHHHHhhC-CCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024216 79 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (270)
Q Consensus 79 s~~eL~~~l~-~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d 157 (270)
|++++.+++. +++++|||+| +..+|..||||||+|+|+.++.+ ...++.++|++.++..+++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPD------ALALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhh------hhCCCHHHHHHHhcccCCCCC
Confidence 6789999887 6679999999 78999999999999999887543 234668889999999999999
Q ss_pred CcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 158 ~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
++||+||++|.+ |.+++++|+.+||+||++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGVR-SKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcHH-HHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 999999999875 8899999999999999999999999963
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.88 E-value=2.5e-22 Score=168.62 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=91.5
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhh---------CCCCCceecCcccccccCCCCCCCCCCHHHH
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---------AHIPGALFFDVDGVADRTTNLPHMLPSEEAF 145 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~---------gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f 145 (270)
...|+++|+.+++++++++|||||..... ..+|.. +|||||+|+|+..+..- . -+..+.|
T Consensus 35 ~~~vs~~el~~~l~~~~~~lIDVR~~~~~-----~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l----~--~~~~~~~ 103 (162)
T TIGR03865 35 ARVLDTEAAQALLARGPVALIDVYPRPPK-----PKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL----A--PAWQAYF 103 (162)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCCccc-----cccccccceeccccCCCCCCcEEecccCCCCC----C--CchhHHH
Confidence 35899999999998888899999921100 013433 59999999986422110 1 1233457
Q ss_pred HHHHHHcCC-CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCc
Q 024216 146 AAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (270)
Q Consensus 146 ~~~l~~~Gi-~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv 203 (270)
.+.+.++++ +++++||+||++|+..+.+++|+|+.+||+||++|+||+.+|+.+|+|+
T Consensus 104 ~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 104 RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 788877765 7999999999998766889999999999999999999999999999985
No 11
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.87 E-value=9.4e-22 Score=181.83 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=104.6
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCC--CCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 024216 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQ--RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~--~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (270)
+..+++.+|+.+.+.+++.+|||+|...-+.+ ..+...+..||||||+|+|+..+.+.+ +.+++.++|++.+.+
T Consensus 188 ~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~----~~~~~~~el~~~~~~ 263 (320)
T PLN02723 188 PHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS----QTLLPAEELKKRFEQ 263 (320)
T ss_pred ccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----CCCCCHHHHHHHHHh
Confidence 34578999999999887889999993211110 011123478999999999998765543 478899999999999
Q ss_pred cCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhC-CCCcccCC
Q 024216 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (270)
Q Consensus 152 ~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~-G~pv~~~~ 207 (270)
+||+++++||+||++|.+ |+.+||+|+.+||++|++|+|||.+|... ++|++++.
T Consensus 264 ~gi~~~~~iv~yC~sG~~-A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 264 EGISLDSPIVASCGTGVT-ACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred cCCCCCCCEEEECCcHHH-HHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 999999999999998765 99999999999999999999999999874 67887754
No 12
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.86 E-value=1.7e-21 Score=152.38 Aligned_cols=98 Identities=27% Similarity=0.270 Sum_probs=85.4
Q ss_pred CcccHHHHHHhhCCC-CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 024216 76 PVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi 154 (270)
..|+++++.++++++ +.+|||+| +..+|..||||||+|+|+..+ ...+..++.
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~~l-----------------~~~~~~l~~ 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGAEL-----------------VLRVGELAP 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHHHH-----------------HHHHHhcCC
Confidence 479999999998765 57899999 789999999999999997643 345677777
Q ss_pred CCCCcEEEecCCChhHHHHHHHHHHHcCCCc-EEEecccHHHHHhCC
Q 024216 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 200 (270)
Q Consensus 155 ~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~-V~vLdGG~~~W~~~G 200 (270)
+++++||+||.+|.+ +..+++.|+.+||+| |+.|+||+.+|..+|
T Consensus 64 ~~~~~ivv~C~~G~r-s~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 DPRTPIVVNCAGRTR-SIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCeEEEECCCCch-HHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 788999999999876 788899999999998 999999999999876
No 13
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.86 E-value=3.6e-22 Score=161.07 Aligned_cols=109 Identities=23% Similarity=0.384 Sum_probs=82.3
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccC--C---C---------CCCCCCCHH
Q 024216 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT--T---N---------LPHMLPSEE 143 (270)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~--~---~---------~~~~lp~~~ 143 (270)
||++|+.++++ ++++||||| .+.+|..||||||+|+|+..+.... . . .+.++++ .
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR---------~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR---------SPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS-G 69 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC---------CHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh-h
Confidence 68999999997 568999999 6899999999999999986532210 0 0 0011221 2
Q ss_pred HHHHHHH---HcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 144 AFAAAVS---ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 144 ~f~~~l~---~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
.+++.+. +.|++++++||+||..++..|.+++|+|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3344443 358999999999997433348899999999999 59999999999975
No 14
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.85 E-value=6.1e-21 Score=147.67 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=81.1
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
||++||++++.++ +++|||+| +..+|..||||||+|+|+..+...... ...+|..+.|.. .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR---------~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~-------~ 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR---------SSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLEN-------Y 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC---------CHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHh-------h
Confidence 6899999999763 58999999 678999999999999999875432111 133444444433 2
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
.+++||+||.+|.+ +.+++++|+.+||++|++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~~-s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHKH-AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCcc-HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 37889999998875 778889999999999999999999996
No 15
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=6.7e-21 Score=146.94 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=80.2
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
..|+++++.+++.+++++||||| ++.||..||||||+|+|+..+... ...+.+.+ .++
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR---------~~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~~---~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR---------NDYEYDIGHFKGAVNPDVDTFREF----------PFWLDENL---DLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC---------ChhhhhcCEeccccCCCcccHhHh----------HHHHHhhh---hhc
Confidence 46899999999987789999999 689999999999999998865321 11122212 137
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
++++|||||++|.+ +..+++.|+.+||++|++|+||+.+|.
T Consensus 60 ~~~~ivvyC~~G~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 60 KGKKVLMYCTGGIR-CEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred CCCEEEEECCCchh-HHHHHHHHHHhCCcceeeechhHHHHh
Confidence 88999999999887 556677889999999999999999996
No 16
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=2.3e-20 Score=140.71 Aligned_cols=99 Identities=32% Similarity=0.603 Sum_probs=83.5
Q ss_pred CCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEecCCCh
Q 024216 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (270)
Q Consensus 89 ~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~ 168 (270)
+++++|||+| +..+|..||||||+|+|+..+........ ...+.+.+...+++++++||+||.+|.
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~~c~~g~ 67 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGELD-----ILEFEELLKRLGLDKDKPVVVYCRSGN 67 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCCcC-----HHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 3568999999 78999999999999999987654322211 127788888899999999999998776
Q ss_pred hHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCC
Q 024216 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (270)
Q Consensus 169 ~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~p 202 (270)
. +.++++.|+.+|+++|++|+||+.+|..+|.|
T Consensus 68 ~-a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 68 R-SAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred H-HHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 4 88999999999999999999999999998864
No 17
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.83 E-value=2.5e-20 Score=142.97 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=83.7
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~ 156 (270)
.|++++|.++++++ .+|||+| +..+|..||||||+|+|+..+.... ..+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~~-------------------~~~~~ 53 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESEG-------------------LPLVG 53 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhcccc-------------------cCCCC
Confidence 58999999998776 8899999 7899999999999999987654310 12578
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCc
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv 203 (270)
+++||+||++|.+ ++.++..|+.+|+++|++|+||+.+|+..|+|+
T Consensus 54 ~~~iv~~c~~g~~-s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 54 ANAIIFHCRSGMR-TQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 8999999999876 778889999999999999999999999999875
No 18
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.83 E-value=2.1e-20 Score=169.73 Aligned_cols=118 Identities=24% Similarity=0.336 Sum_probs=101.4
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhh-----------hhCCCCCceecCcccccccCCCCCCCCCCH
Q 024216 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-----------QVAHIPGALFFDVDGVADRTTNLPHMLPSE 142 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey-----------~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~ 142 (270)
+..+++.+++...+.+++.+|||+| +..+| ..||||||+|+|+.++.+. +.+.++
T Consensus 151 ~~~~~~~~~v~~~~~~~~~~llD~R---------~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~-----~~~~~~ 216 (281)
T PRK11493 151 PEAVVRLTDVLLASHEKTAQIVDAR---------PAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-----GELKTT 216 (281)
T ss_pred ccceecHHHHHHhhcCCCcEEEeCC---------CccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-----CCcCCH
Confidence 4557788888877777778999999 44555 3799999999999886532 357788
Q ss_pred HHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh-CCCCcccC
Q 024216 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA-SGYDVESS 206 (270)
Q Consensus 143 ~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~-~G~pv~~~ 206 (270)
+++++.+.+.|++++++||+||++|.+ |+.++++|+.+||+||++|+||+.+|.. .++|++++
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~-A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVT-AAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHH-HHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 999999999999999999999998875 8899999999999999999999999998 79999865
No 19
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.83 E-value=3.1e-20 Score=184.45 Aligned_cols=121 Identities=22% Similarity=0.377 Sum_probs=104.5
Q ss_pred CCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhh--------hhCCCCCceecCcccccccCCCCCCCCCCHHH
Q 024216 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY--------QVAHIPGALFFDVDGVADRTTNLPHMLPSEEA 144 (270)
Q Consensus 73 ~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey--------~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~ 144 (270)
.+..+++.+|+++++++++++|||+| +.++| ..||||||+|+|+..+.+.. +.+++.++
T Consensus 144 ~~~~~v~~e~v~~~l~~~~~~iIDaR---------~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~----~~lk~~~e 210 (610)
T PRK09629 144 HDEPTATREYLQSRLGAADLAIWDAR---------APTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA----RNLRIRQD 210 (610)
T ss_pred CCcccccHHHHHHhhCCCCcEEEECC---------CccccCCcccccccCCCCCCCeecCHHHhcCCC----CCCCCHHH
Confidence 34568999999999988888999999 34555 57999999999987654432 46888999
Q ss_pred HHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh-CCCCcccCC
Q 024216 145 FAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA-SGYDVESSA 207 (270)
Q Consensus 145 f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~-~G~pv~~~~ 207 (270)
+++++.++||+++++||+||++|. .|+.+||+|+.+|++||++|+|||.+|.+ .++|+++..
T Consensus 211 l~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 211 MPEILRDLGITPDKEVITHCQTHH-RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred HHHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 999999999999999999999987 48999999999999999999999999987 478998754
No 20
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.83 E-value=3.6e-20 Score=145.28 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=84.2
Q ss_pred CcccHHHHHHhhCCC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 76 PVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
.-|++++|.+++.++ +++|||+| +..+|..||||||+|+|...+... .+ .+
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~l~~~----------------~~--~~ 60 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVR---------SAEAYARGHVPGAINLPHREICEN----------------AT--AK 60 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECC---------CHHHHhcCCCCCCEeCCHHHhhhH----------------hh--hc
Confidence 469999999998753 58999999 679999999999999997764311 11 25
Q ss_pred CCCCCcEEEecCCCh-hHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCc
Q 024216 154 LENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (270)
Q Consensus 154 i~~d~~VVvYc~~g~-~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv 203 (270)
++++++||+||++|. ..+.++++.|+.+||+ |++|+||+.+|+.+|+|+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 789999999999864 4589999999999996 999999999999999975
No 21
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.83 E-value=6.1e-20 Score=143.33 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=88.1
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
..|++++|.+++.+++.+|||+| ++.+|..||||||+|+|+.. |.+++.. ++
T Consensus 5 ~~is~~el~~~l~~~~~~ivDvR---------~~~e~~~ghi~gA~~ip~~~-----------------l~~~~~~--~~ 56 (108)
T PRK00162 5 ECINVEQAHQKLQEGGAVLVDIR---------DPQSFAMGHAPGAFHLTNDS-----------------LGAFMRQ--AD 56 (108)
T ss_pred cccCHHHHHHHHHcCCCEEEEcC---------CHHHHhcCCCCCCeECCHHH-----------------HHHHHHh--cC
Confidence 46899999999977778999999 78999999999999998653 4455665 46
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccC
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~ 206 (270)
++++||+||..|.+ +..+...|+..||+||++|+||+.+|+..++|++..
T Consensus 57 ~~~~ivv~c~~g~~-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 57 FDTPVMVMCYHGNS-SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCCEEEEeCCCCC-HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 78899999998875 677888999999999999999999999999998763
No 22
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.82 E-value=3e-20 Score=142.83 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=80.7
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhh-hhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 024216 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (270)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey-~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~ 156 (270)
|+++++.+++.+++.+|||+| +..+| ..||||||+|+|+..+....... ..+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR---------~~~~~~~~ghIpga~~ip~~~~~~~~~~~-----------~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR---------DPRELERTGMIPGAFHAPRGMLEFWADPD-----------SPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC---------CHHHHHhcCCCCCcEEcccchhhhhcCcc-----------ccccccCCCC
Confidence 688999999887778999999 56777 57999999999976543110000 0012235789
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCC
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G 200 (270)
+++||+||.+|.+ +.+++++|+.+|+++|++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGWR-SALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 9999999998765 789999999999999999999999998765
No 23
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.82 E-value=5.8e-20 Score=142.55 Aligned_cols=107 Identities=29% Similarity=0.555 Sum_probs=83.6
Q ss_pred cHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC--CCC
Q 024216 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG--LEN 156 (270)
Q Consensus 79 s~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G--i~~ 156 (270)
|++||++++.+++++||||| +..+|..||||||+|+|+..+ .........+.+...+...+ +++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSL-----DPDEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGG-----SSSSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCcccccccc-----ccccccccccccccccccccccccc
Confidence 68999999977789999999 799999999999999999776 11234445566666555443 488
Q ss_pred CCcEEEecCCChh----HHHHHHHHHHHcCCCcEEEecccHHHHHhC
Q 024216 157 KDGLVVYDGKGIF----SAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 157 d~~VVvYc~~g~~----~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~ 199 (270)
+++||+||..|.. .+.+.+|+|+.+|+++|++|+||+.+|.++
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 9999999965543 233455669999999999999999999863
No 24
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.81 E-value=9.4e-20 Score=145.57 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=88.7
Q ss_pred CCCcccHHHHHHhhCC-CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 024216 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~ 152 (270)
+...|++++|.+++.+ .+.+|||+| +..+|..||||||+|+|+..+.+.... ++.. ++...
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~~----~~~~-----~~~~~ 67 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAAE----LKSL-----QELPL 67 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhhh----hhhh-----hhccc
Confidence 3457999999999876 568899999 789999999999999999876542211 1111 34456
Q ss_pred CCCCCCcEEEecCCChhHHHHHHHHHHHcCC-CcEEEecccHHHHHhCCCC
Q 024216 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGYD 202 (270)
Q Consensus 153 Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~-~~V~vLdGG~~~W~~~G~p 202 (270)
+++++++||+||++|.+ |..++..|+.+|| ++|+.|+||+.+|..+..+
T Consensus 68 ~~~~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 68 DNDKDSPIYVVCRRGND-SQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred ccCCCCcEEEECCCCCc-HHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 78899999999998875 7788899999999 7999999999999976543
No 25
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.81 E-value=8.8e-20 Score=139.24 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=74.4
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
||+++|.+++.++ +++||||| +..+|..||||||+|+|+..+... +..+-..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghipga~~ip~~~l~~~-----------------~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR---------TPEEYEAGHLPGFRHTPGGQLVQE-----------------TDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC---------CHHHHHhCCCCCcEeCCHHHHHHH-----------------HHHhccc
Confidence 6889999988764 57899999 789999999999999998654321 1111112
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
++++||+||++|.+ +..+++.|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~r-s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGVR-ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCCh-HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 47889999999887 56677788999999 9999999999974
No 26
>PLN02160 thiosulfate sulfurtransferase
Probab=99.81 E-value=3.8e-19 Score=145.18 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=90.8
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCc--eecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGA--v~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
..|+++++.+++.++ .+||||| +..+|..|||||| +|+|+..+. .. ..+.+.+...+ +...
T Consensus 15 ~~i~~~e~~~~~~~~-~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~-~~----~~l~~~~~~~~-~~~~- 77 (136)
T PLN02160 15 VSVDVSQAKTLLQSG-HQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNT-PQ----GRVKNQEFLEQ-VSSL- 77 (136)
T ss_pred eEeCHHHHHHHHhCC-CEEEECC---------CHHHHhcCCCCCcceecccchhcC-cc----cccCCHHHHHH-HHhc-
Confidence 468999999988754 5799999 7899999999999 899875432 11 12333332222 3332
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~ 207 (270)
++++++||+||++|.+ |..++..|...||++|+.|.||+.+|..+|+|+++..
T Consensus 78 ~~~~~~IivyC~sG~R-S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 78 LNPADDILVGCQSGAR-SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred cCCCCcEEEECCCcHH-HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 5788999999999986 8888999999999999999999999999999999865
No 27
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-19 Score=161.57 Aligned_cols=121 Identities=23% Similarity=0.430 Sum_probs=107.6
Q ss_pred CCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhh----------CCCCCceecCcccccccCCCCCCCCCCH
Q 024216 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV----------AHIPGALFFDVDGVADRTTNLPHMLPSE 142 (270)
Q Consensus 73 ~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~----------gHIPGAv~ip~~~l~~~~~~~~~~lp~~ 142 (270)
+...+++.+.++..++....+|||+| ++.+|.. ||||||+|+|+..+.+. .+++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~liDaR---------~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~----~~~~~~~ 219 (285)
T COG2897 153 NVKAVVDATLVADALEVPAVLLIDAR---------SPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD----GGLFKSP 219 (285)
T ss_pred CccccCCHHHHHHHhcCCCeEEEecC---------CHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC----CCccCcH
Confidence 45568899999999998888999999 6788877 99999999999987762 3578899
Q ss_pred HHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhC-CCCcccCC
Q 024216 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (270)
Q Consensus 143 ~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~-G~pv~~~~ 207 (270)
++++.++...||+.+++||+||++|.+ |+-.|+.|+.+|+.++++++|++.+|.+. +.||+++.
T Consensus 220 ~~~~~l~~~~gi~~~~~vI~yCgsG~~-As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 220 EEIARLYADAGIDPDKEVIVYCGSGVR-ASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcCCchH-HHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 999999999999999999999999985 89999999999999999999999999974 56888764
No 28
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.80 E-value=4.7e-19 Score=136.59 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=77.8
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC-
Q 024216 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (270)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi- 154 (270)
|++++|.+++..+ +.+|||+| +..+|..+|||||+|+|+..+. .++..++.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~-----------------~~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIP-----------------ERSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHH-----------------HHHHHhccc
Confidence 7899999998765 58899999 7899999999999999986543 22333221
Q ss_pred CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 155 ~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
+++++||+||++|.+ |+++++.|..+||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~r-s~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGGR-SMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCch-HHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 568999999998875 7777888888999999999999999975
No 29
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.79 E-value=5.6e-19 Score=134.95 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 024216 80 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (270)
Q Consensus 80 ~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~ 159 (270)
++||.+. +++++|||+| ++.+|..||||||+|+|+..+. +..+.++. +.. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR---------~~~~~~~~hIpgA~~ip~~~~~----------~~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR---------AEDEYAAGHLPGKRSIPGAALV----------LRSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC---------CHHHHcCCCCCCcEeCCHHHhc----------CCHHHHHH-hhc--CCCCCC
Confidence 4566652 4568999999 6789999999999999976542 22344443 332 478999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
||+||++|.. +.++++.|+.+||+||++|+||+.+|.+
T Consensus 59 ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 59 YVLTCDGSLL-ARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEEeCChHH-HHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999998876 6667777899999999999999999974
No 30
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.78 E-value=1.3e-18 Score=131.48 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=75.3
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024216 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (270)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d 157 (270)
++++|+.+++ .++.+|||+| +..+|..||||||+|+|+.++ .+.+.. ++++
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~~-----------------~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVR---------TPQEFEKGHIKGAINIPLDEL-----------------RDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECC---------CHHHHhcCCCCCCEeCCHHHH-----------------HHHHHh--cCCC
Confidence 5789999988 4457899999 789999999999999997643 333443 5788
Q ss_pred CcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 158 ~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
++||+||++|.. +..++..|+.+|+ +|++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~~-a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGLR-GYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCChh-HHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 999999998764 8888899999999 8999999999996
No 31
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.78 E-value=1.1e-18 Score=132.56 Aligned_cols=91 Identities=32% Similarity=0.449 Sum_probs=78.6
Q ss_pred ccHHHHHHhhCC-CCcEEEEeccCCCCCCCCChhhhhh--CCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 024216 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (270)
Q Consensus 78 Is~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~--gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi 154 (270)
|+++++.+++.+ .+.+|||+| +..+|.. ||||||+|+|+..+ .+.+.. +
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~~-----------------~~~~~~--~ 53 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDSL-----------------DDWLGD--L 53 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHHH-----------------HHHHhh--c
Confidence 788999998876 468999999 7889999 99999999997653 333443 6
Q ss_pred CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 155 ~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
+++++||+||.+|.+ |.++++.|+.+||++|++|+||+.+|.
T Consensus 54 ~~~~~ivv~c~~g~~-s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 54 DRDRPVVVYCYHGNS-SAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCCCEEEEeCCCCh-HHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 789999999997765 889999999999999999999999996
No 32
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.78 E-value=1.7e-18 Score=142.85 Aligned_cols=97 Identities=30% Similarity=0.390 Sum_probs=80.7
Q ss_pred HHHhhCCC-CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEE
Q 024216 83 LHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 161 (270)
Q Consensus 83 L~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VV 161 (270)
|.+++.++ +++|||+| +..+|..||||||+|+|.. +|.+.+.++ .++++||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~-----------------~l~~~l~~l--~~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRA-----------------QLAQALEKL--PAAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHH-----------------HHHHHHHhc--CCCCCEE
Confidence 34455433 48999999 7899999999999999754 455667775 4678999
Q ss_pred EecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCC
Q 024216 162 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSAS 208 (270)
Q Consensus 162 vYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~ 208 (270)
|||.++. .|+.+++.|+..|+++|++|+||+.+|+++|+|++++.+
T Consensus 54 v~c~~g~-~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 54 LTCGSSL-LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEeCCCh-HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 9999875 588899999999999999999999999999999998643
No 33
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=7e-19 Score=140.78 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=78.1
Q ss_pred cccHHHHHHhhCCC------CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcc-cccccCCCCCCCCCCHHHHHHHH
Q 024216 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAAV 149 (270)
Q Consensus 77 lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~-~l~~~~~~~~~~lp~~~~f~~~l 149 (270)
.||++++.+++.++ +++||||| .+.+|..||||||+|+|+. .+.. .+....
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCR---------FPYEYNGGHIKGAVNLSTKDELEE-------------FFLDKP 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECC---------CHHHHhCCcCCCCEeCCcHHHHHH-------------HHHHhh
Confidence 48999999998653 68999999 6899999999999999975 2321 111111
Q ss_pred HHcCCCCCCcEEEecC-CChhHHHHHHHHHHHc------------CCCcEEEecccHHHHH
Q 024216 150 SALGLENKDGLVVYDG-KGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 197 (270)
Q Consensus 150 ~~~Gi~~d~~VVvYc~-~g~~~A~ra~~~L~~~------------G~~~V~vLdGG~~~W~ 197 (270)
..++++++++||+||. +|.+ |+++++.|+.+ ||++|++|+||+.+|.
T Consensus 61 ~~~~~~~~~~vv~yC~~sg~r-s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 61 GVASKKKRRVLIFHCEFSSKR-GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccccCCCCEEEEECCCcccc-HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 2356889999999997 6665 88889999884 9999999999999984
No 34
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=1.7e-18 Score=133.17 Aligned_cols=98 Identities=22% Similarity=0.136 Sum_probs=78.2
Q ss_pred ccHHHHHHhhCCC-CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 024216 78 VSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (270)
Q Consensus 78 Is~~eL~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~ 156 (270)
|++++|.+++.++ +++||||| ++.+|..||||||+|+|+..+.... + +...+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR---------~~~e~~~ghi~ga~~ip~~~~~~~~------~---~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR---------NESDYERWKIDGENNTPYFDPYFDF------L---EIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC---------CHHHHhhcccCCCcccccccchHHH------H---HhhHHHHhh--CCC
Confidence 6889999988764 58999999 7899999999999999987643210 0 001223333 578
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
+++||+||..|.+ +..++..|+..||+ ++.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~r-s~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEGS-SQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 8999999998875 78888999999999 999999999996
No 35
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.76 E-value=1.7e-18 Score=137.50 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=84.6
Q ss_pred ccHHHHHHhhCC-CCcEEEEeccCCCCCCCCChhhhh-hCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 78 Is~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~-~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
||++++.+++.+ ++.+|||+| ++.+|. .||||||+|+|+.++... .+. ..|...+..+. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~~-------~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPDM-------EIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhcccc-------ccC-HHHHHHHHhhC-C
Confidence 689999999987 568999999 789999 999999999998875421 122 34555555553 7
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhC
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~ 199 (270)
++++||+||.+|.+ |..+++.|+.+||+||+.|.||+.+|...
T Consensus 63 ~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 63 KDRPVLLLCRSGNR-SIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCeEEEEcCCCcc-HHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 88999999998865 88889999999999999999999999863
No 36
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.75 E-value=5.2e-18 Score=158.11 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=106.7
Q ss_pred cHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCccccccc---------CC-----CCCCCCCCHHH
Q 024216 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---------TT-----NLPHMLPSEEA 144 (270)
Q Consensus 79 s~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~---------~~-----~~~~~lp~~~~ 144 (270)
...++.+.+. ++.+||||| ++.||..||||||+|+|+.+...+ .+ ...+.+++.+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVR---------sp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVR---------SPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh-CCCEEEECC---------CHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 3566666553 458999999 789999999999999998643211 01 12234554332
Q ss_pred HHHHHHHcCC--CCCCcEEEecC-CChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHH
Q 024216 145 FAAAVSALGL--ENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEA 221 (270)
Q Consensus 145 f~~~l~~~Gi--~~d~~VVvYc~-~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~ 221 (270)
.......++. +++++||+||. +|. .|.+++|+|+.+||+ |++|+||+.+|+..+++.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~-RS~~aa~~L~~~G~~-v~~L~GG~~awr~~~~~~~~~~~------------- 138 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGL-RSGSVQQWLKEAGID-VPRLEGGYKAYRRFVIDTLEEAP------------- 138 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCh-HHHHHHHHHHHcCCC-cEEEcCCHHHHHHhhHHHHhhhc-------------
Confidence 2222222222 47899999996 555 488899999999994 99999999999998886555321
Q ss_pred HHHhhcCcccCCcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 222 IEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
.+..|.. .......+..+|+..+.+.+.++||.|+..+
T Consensus 139 ----------~~~~~iv-l~G~TGsGKT~iL~~L~~~~~~vlDlE~~ae 176 (345)
T PRK11784 139 ----------AQFPLVV-LGGNTGSGKTELLQALANAGAQVLDLEGLAN 176 (345)
T ss_pred ----------ccCceEe-cCCCCcccHHHHHHHHHhcCCeEEECCchhh
Confidence 1112211 2223347789999999888899999998753
No 37
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.75 E-value=3.1e-18 Score=130.18 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=69.7
Q ss_pred hhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEecC
Q 024216 86 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (270)
Q Consensus 86 ~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~ 165 (270)
++.+++++|||+| +..+|..||||||+|+|+..+... ....+ .+++++||+||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~----------------~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLELD----------------AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHhh----------------hHhhC-CCCCCeEEEEeC
Confidence 4556678999999 789999999999999998764321 01111 135889999999
Q ss_pred CChh-HHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 166 KGIF-SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 166 ~g~~-~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
+|.. .|.+++++|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 8764 37899999999999999999999999974
No 38
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=7.8e-18 Score=158.90 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=90.5
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
..|+++++.++++++ .+|||+| +..+|..||||||+|+|+.. +.+.+..++++
T Consensus 3 ~~is~~el~~~l~~~-~~ivDvR---------~~~e~~~ghIpgAi~ip~~~-----------------l~~~~~~~~~~ 55 (376)
T PRK08762 3 REISPAEARARAAQG-AVLIDVR---------EAHERASGQAEGALRIPRGF-----------------LELRIETHLPD 55 (376)
T ss_pred ceeCHHHHHHHHhCC-CEEEECC---------CHHHHhCCcCCCCEECCHHH-----------------HHHHHhhhcCC
Confidence 358999999998764 8899999 78999999999999999764 33445555568
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCC
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSAS 208 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~ 208 (270)
++++||+||++|.+ |.++++.|+.+||+||++|+||+.+|+..|+|++....
T Consensus 56 ~~~~IvvyC~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 56 RDREIVLICASGTR-SAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred CCCeEEEEcCCCcH-HHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 89999999998875 78899999999999999999999999999999997653
No 39
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.74 E-value=6.9e-18 Score=132.84 Aligned_cols=100 Identities=24% Similarity=0.358 Sum_probs=75.1
Q ss_pred CcccHHHHHHhhCC--CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 76 ~lIs~~eL~~~l~~--~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
..|++++|.+++.+ ++++|||+| +. +|..||||||+|+|+..+.. .+.++....|
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 36899999999876 457899999 67 99999999999999886532 2344445556
Q ss_pred CCCCCcEEEecC-CChhHHHHHHHHH-HH-------cCCCcEEEecccHHHHHhC
Q 024216 154 LENKDGLVVYDG-KGIFSAARVWWMF-RV-------FGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 154 i~~d~~VVvYc~-~g~~~A~ra~~~L-~~-------~G~~~V~vLdGG~~~W~~~ 199 (270)
++++++||+||. ++.+ +..+..+| +. .|++||++|+||+.+|.+.
T Consensus 59 ~~~~~~iv~yC~~~~~r-~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 59 GSKKDTVVFHCALSQVR-GPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCCCeEEEEeecCCcc-hHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 688899999997 4333 33332222 22 4999999999999999863
No 40
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.74 E-value=1.5e-17 Score=152.92 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=97.6
Q ss_pred CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccC--CCCCC------------CCC--C-HHHHHHHHHHcC
Q 024216 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT--TNLPH------------MLP--S-EEAFAAAVSALG 153 (270)
Q Consensus 91 ~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~--~~~~~------------~lp--~-~~~f~~~l~~~G 153 (270)
+.+||||| .+.||..||||||+|+|+.+...+. +..+. .+. . ++.+.+++..
T Consensus 2 ~~~liDVR---------sp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~-- 70 (311)
T TIGR03167 2 FDPLIDVR---------SPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAF-- 70 (311)
T ss_pred CCEEEECC---------CHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhh--
Confidence 35799999 7899999999999999985422110 00000 000 0 1123333333
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhhcCcccCC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (270)
.+++..||+||..++..|.+++|.|+.+|| +|++|+||+.+|+..+.+.....+. +
T Consensus 71 ~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~-----------------------~ 126 (311)
T TIGR03167 71 ADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQ-----------------------P 126 (311)
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCC-----------------------C
Confidence 244556999996433348999999999999 5999999999999999876664321 1
Q ss_pred cccccccCCccccCHHHHHHHhhCCCcEEEccCCCC
Q 024216 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKA 269 (270)
Q Consensus 234 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~ 269 (270)
..+.. +.....++..+|++.+++.+.++||.|+..
T Consensus 127 ~~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a 161 (311)
T TIGR03167 127 FPLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLA 161 (311)
T ss_pred Cceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchH
Confidence 12222 223456889999999988889999999864
No 41
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.74 E-value=3.8e-18 Score=137.91 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=83.2
Q ss_pred cccHHHHHHhhCC--CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCC---C--CCCCCCCHHHHHHHH
Q 024216 77 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT---N--LPHMLPSEEAFAAAV 149 (270)
Q Consensus 77 lIs~~eL~~~l~~--~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~---~--~~~~lp~~~~f~~~l 149 (270)
+|+++||.+++.. ++++|||+| +..+|..||||||+|+|+..+..+.. . ...++++.+.++. +
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-L 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-H
Confidence 5899999999975 468999999 78899999999999999986432211 1 1124566655544 4
Q ss_pred HHcCCCCCCcEEEecCCCh-----hHHHHHHHHHHHcCC-----CcEEEecccHHHHHh
Q 024216 150 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 198 (270)
Q Consensus 150 ~~~Gi~~d~~VVvYc~~g~-----~~A~ra~~~L~~~G~-----~~V~vLdGG~~~W~~ 198 (270)
.+. ++++|||||+.+. ..+++++|+++.+|+ .+|++|+||+.+|.+
T Consensus 71 ~~~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 RRG---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred hcC---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 332 6889999998764 357788888887776 689999999999976
No 42
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.7e-17 Score=132.00 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=95.4
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi 154 (270)
...++.+++++++..++.++|||| .++||..||||.++|||+-.... .++++ ..+|.+.++..--
T Consensus 22 ~~sv~~~qvk~L~~~~~~~llDVR---------epeEfk~gh~~~siNiPy~~~~~-----~~~l~-~~eF~kqvg~~kp 86 (136)
T KOG1530|consen 22 PQSVSVEQVKNLLQHPDVVLLDVR---------EPEEFKQGHIPASINIPYMSRPG-----AGALK-NPEFLKQVGSSKP 86 (136)
T ss_pred cEEEEHHHHHHHhcCCCEEEEeec---------CHHHhhccCCcceEecccccccc-----ccccC-CHHHHHHhcccCC
Confidence 347899999999999889999999 78999999999999999853221 23333 4567777777656
Q ss_pred CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcc
Q 024216 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (270)
Q Consensus 155 ~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~ 204 (270)
..|+.|||||.+|.+ +..|-..|..+||+||.++.|||.+|.+.|+|..
T Consensus 87 ~~d~eiIf~C~SG~R-s~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 87 PHDKEIIFGCASGVR-SLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCCcEEEEeccCcc-hhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 678899999999986 7778889999999999999999999999988753
No 43
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.73 E-value=8.3e-18 Score=124.92 Aligned_cols=88 Identities=32% Similarity=0.559 Sum_probs=73.5
Q ss_pred HHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEE
Q 024216 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 162 (270)
Q Consensus 83 L~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVv 162 (270)
+.+++.+++.+|||+| +..+|..||||||+|+|+..+... ....+++++++||+
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~~-----------------~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEER-----------------AALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhhH-----------------HHhhccCCCCeEEE
Confidence 4455656679999999 789999999999999998764321 13456789999999
Q ss_pred ecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 163 Yc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
||..+. .|.++++.|+.+|+++|++|+||+.+|.
T Consensus 56 ~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCc-hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999875 4899999999999999999999999994
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=2.8e-17 Score=129.47 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=71.9
Q ss_pred cccHHHHHHhhCCC------CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 024216 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 150 (270)
Q Consensus 77 lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~ 150 (270)
.|++++|++++.++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~~ 59 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVYA 59 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHHH
Confidence 58999999999875 58899999 56 99999999999999876532 1223333
Q ss_pred HcCCCCCCcEEEecCCChhHHHHHH-HHHH---HcCC--CcEEEecccHHHHH
Q 024216 151 ALGLENKDGLVVYDGKGIFSAARVW-WMFR---VFGH--DRVWVLDGGLPRWR 197 (270)
Q Consensus 151 ~~Gi~~d~~VVvYc~~g~~~A~ra~-~~L~---~~G~--~~V~vLdGG~~~W~ 197 (270)
.+...+.++||+||.++...+.+++ |+++ ..|+ .++++|+||+.+|.
T Consensus 60 ~~~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 60 LFSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HhhhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 3333456789999987432355544 4333 3464 78999999999996
No 45
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.68 E-value=2.5e-16 Score=145.22 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHH-HHc
Q 024216 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV-SAL 152 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l-~~~ 152 (270)
....|+++++.+++.+++++||||| ...||..||||||+|+|+..+.+ |...+ ..+
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR---------~~~E~~~GhI~GAi~ip~~~~~~--------------~~~~l~~~~ 166 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMR---------NDYEYEIGHFENAIEPDIETFRE--------------FPPWVEENL 166 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECC---------CHHHHhcCcCCCCEeCCHHHhhh--------------hHHHHHHhc
Confidence 3458999999999988889999999 68999999999999999876532 11222 345
Q ss_pred CCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 153 Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
++.++++||+||.+|.+ +..++..|+..||++|+.|+||+.+|..
T Consensus 167 ~~~kdk~IvvyC~~G~R-s~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 167 DPLKDKKVVMYCTGGIR-CEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred CCCCcCeEEEECCCCcH-HHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 67789999999999987 5566677888999999999999999986
No 46
>PRK01415 hypothetical protein; Validated
Probab=99.66 E-value=4.1e-16 Score=138.85 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=85.1
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH-Hc
Q 024216 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-AL 152 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~-~~ 152 (270)
....|+++++.+++++++++||||| ...||..||||||+|+|+..+.. |.+++. ..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVR---------n~~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~~ 166 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTR---------NDYEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQNQ 166 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECC---------CHHHHhcCCcCCCCCCChHHHhh--------------hHHHHhhhh
Confidence 3458999999999998889999999 68999999999999999876532 222221 12
Q ss_pred CCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCC
Q 024216 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (270)
Q Consensus 153 Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G 200 (270)
.++++++|++||.+|.+ +..+...|+..||++|+.|.||+.+|....
T Consensus 167 ~~~k~k~Iv~yCtgGiR-s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIR-CEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChH-HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 35789999999999987 778888899999999999999999999743
No 47
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.66 E-value=5.9e-16 Score=120.81 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEecCCChh
Q 024216 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (270)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~ 169 (270)
.+-+|||+| ++.+|..||||||+|+|+.+ |.+.+..++.+++++||+||++|.+
T Consensus 19 ~~~~lIDvR---------~~~ef~~ghIpGAiniP~~~-----------------l~~~l~~l~~~~~~~IVlyC~~G~r 72 (104)
T PRK10287 19 AAEHWIDVR---------VPEQYQQEHVQGAINIPLKE-----------------VKERIATAVPDKNDTVKLYCNAGRQ 72 (104)
T ss_pred CCCEEEECC---------CHHHHhcCCCCccEECCHHH-----------------HHHHHHhcCCCCCCeEEEEeCCChH
Confidence 446799999 79999999999999999764 4456777777888999999998865
Q ss_pred HHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 170 ~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
|+.+++.|..+||++|++ .||+.+|..
T Consensus 73 -S~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 73 -SGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred -HHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 888899999999999987 699999975
No 48
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.66 E-value=6.1e-16 Score=120.13 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=68.7
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEecCCChh
Q 024216 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (270)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~ 169 (270)
....+||+| +..+|..||||||+|+|+.+ +.+.+.+++.+++++||+||.+|.+
T Consensus 17 ~~~~lIDvR---------~~~ef~~ghIpgAinip~~~-----------------l~~~l~~~~~~~~~~vvlyC~~G~r 70 (101)
T TIGR02981 17 AAEHWIDVR---------IPEQYQQEHIQGAINIPLKE-----------------IKEHIATAVPDKNDTVKLYCNAGRQ 70 (101)
T ss_pred cCCEEEECC---------CHHHHhcCCCCCCEECCHHH-----------------HHHHHHHhCCCCCCeEEEEeCCCHH
Confidence 346799999 78999999999999999764 3344666666778899999999875
Q ss_pred HHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 170 ~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
|..++..|+.+||++|+++ ||+.+|..
T Consensus 71 -S~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 71 -SGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred -HHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 8888899999999999985 99999975
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.6e-16 Score=119.67 Aligned_cols=99 Identities=28% Similarity=0.462 Sum_probs=80.0
Q ss_pred HHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCC-ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 024216 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (270)
Q Consensus 81 ~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPG-Av~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~ 159 (270)
.........++.+||||| .+.||..+|||| ++|+|+.++........ .+++++
T Consensus 10 ~~~~~~~~~~~~~liDvR---------~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~-----------------~~~~~~ 63 (110)
T COG0607 10 DEAALLLAGEDAVLLDVR---------EPEEYERGHIPGAAINIPLSELKAAENLLE-----------------LPDDDP 63 (110)
T ss_pred HHHHHhhccCCCEEEecc---------ChhHhhhcCCCcceeeeecccchhhhcccc-----------------cCCCCe
Confidence 333434445679999999 579999999999 99999988654311100 468999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccC
Q 024216 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~ 206 (270)
|||||..|.+ +..+...|+..||++++.|.||+.+|..+++|++..
T Consensus 64 ivv~C~~G~r-S~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 64 IVVYCASGVR-SAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEEeCCCCC-hHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 9999999987 778889999999998899999999999999988753
No 50
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.63 E-value=1.3e-15 Score=144.65 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=84.6
Q ss_pred CCCcccHHHHHHhhCCC-CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 024216 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (270)
Q Consensus 74 ~~~lIs~~eL~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~ 152 (270)
....|++++++++++++ +++|||+| +..+|..||||||+|+|+..+... ..+.+
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~~---------------~~~~~- 339 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILSG---------------EALAK- 339 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcch---------------hHHhh-
Confidence 34579999999998764 57899999 789999999999999998765321 11222
Q ss_pred CCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCC
Q 024216 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 201 (270)
Q Consensus 153 Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~ 201 (270)
++++++||+||++|.+ |..+++.|+..||++|++|+||+.+|..+.-
T Consensus 340 -l~~d~~iVvyC~~G~r-S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 340 -LPQDRTIVLYCKTGVR-SAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred -CCCCCcEEEEcCCChH-HHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 5789999999998875 8889999999999999999999999998654
No 51
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=133.74 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=79.8
Q ss_pred CcccHHHHHHhhCCC------CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 024216 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l 149 (270)
..|+++++.+++.+. +.+||||| ...||..||||||+|+|+..+... ++.+.+.+
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR---------~~~E~~~Ghi~GAiniPl~~f~~~----------~~~l~~~~ 170 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTR---------NAFEVDVGTFDGALDYRIDKFTEF----------PEALAAHR 170 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECC---------CHHHHccCccCCCEeCChhHhhhh----------HHHHHhhh
Confidence 579999999888652 47899999 689999999999999998765321 01122222
Q ss_pred HHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 150 ~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
.. + ++++||+||.+|.+ +..+...|+..||++|+.|.||+.+|..
T Consensus 171 ~~--~-kdk~IvvyC~~G~R-s~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 171 AD--L-AGKTVVSFCTGGIR-CEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred hh--c-CCCeEEEECCCCHH-HHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 22 2 78999999999986 7888889999999999999999999986
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.56 E-value=9.1e-15 Score=137.13 Aligned_cols=95 Identities=23% Similarity=0.354 Sum_probs=78.3
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~ 155 (270)
..++++++.+.. .+.+|||+| +..+|..||||||+|+|+.++... +...+++
T Consensus 261 ~~i~~~~~~~~~--~~~~IIDVR---------~~~ef~~ghIpgAinip~~~l~~~-----------------~~~~~~~ 312 (355)
T PRK05597 261 EVLDVPRVSALP--DGVTLIDVR---------EPSEFAAYSIPGAHNVPLSAIREG-----------------ANPPSVS 312 (355)
T ss_pred cccCHHHHHhcc--CCCEEEECC---------CHHHHccCcCCCCEEeCHHHhhhc-----------------cccccCC
Confidence 468899988554 347899999 789999999999999998775331 1112367
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhC
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~ 199 (270)
++++||+||++|.+ +.++++.|+.+||++|+.|+||+.+|.++
T Consensus 313 ~~~~IvvyC~~G~r-S~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 313 AGDEVVVYCAAGVR-SAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred CCCeEEEEcCCCHH-HHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 88999999998875 88999999999999999999999999753
No 53
>PRK07411 hypothetical protein; Validated
Probab=99.55 E-value=1.6e-14 Score=137.07 Aligned_cols=102 Identities=24% Similarity=0.354 Sum_probs=81.9
Q ss_pred CcccHHHHHHhhCCC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 76 PVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
..|+++++.++++++ +.+|||+| ++.+|..||||||+|+|+.++.... ..++ +.+
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~----l~~-- 338 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEK----VKE-- 338 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHH----Hhh--
Confidence 469999999988754 47899999 7899999999999999988764321 0112 222
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~p 202 (270)
+.++++||+||.+|.+ |..+++.|+.+||++ +.|+||+.+|..+..|
T Consensus 339 l~~d~~IVvyC~~G~R-S~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 339 LLNGHRLIAHCKMGGR-SAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred cCCCCeEEEECCCCHH-HHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 4578999999998876 888999999999985 5899999999986543
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.35 E-value=1.8e-12 Score=122.19 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=74.6
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCC---CceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIP---GAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
.++++++.+++.+++.+||||| ++.||..|||| ||+|+|+.++.... .+.+.+. .
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR---------~~~E~~~ghI~~~~gAinIPl~~l~~~~-----------~~~~~l~--~ 329 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVR---------EPHEVLLKDLPEGGASLKLPLSAITDDA-----------DILHALS--P 329 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECC---------CHHHhhhccCCCCCccEeCcHHHhhcch-----------hhhhhcc--c
Confidence 6899999999987778899999 78999999998 59999998764310 0111121 1
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCc-EEEecccHH
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 194 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~-V~vLdGG~~ 194 (270)
++++ +|||||..|.+ |..++..|+..||++ |+.|.||+.
T Consensus 330 ~~~~-~Ivv~C~sG~R-S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 330 IDGD-NVVVYCASGIR-SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred cCCC-cEEEECCCChh-HHHHHHHHHHcCCCCceEEeccccC
Confidence 3444 89999999987 778889999999996 999999974
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.23 E-value=2.5e-11 Score=108.83 Aligned_cols=116 Identities=23% Similarity=0.340 Sum_probs=90.9
Q ss_pred cccHHHHHHh-hCCCCcEEEEeccC--CCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 77 VVSVDWLHAN-LREPDLKVLDASWY--MPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 77 lIs~~eL~~~-l~~~~~vIIDvR~~--~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
+++-+++... ++..++.+||+|.. ......++...+..||||||+|||+..+.++.+ .+.+.+++...+.+.|
T Consensus 157 l~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g----~~k~~edl~~~f~~~~ 232 (286)
T KOG1529|consen 157 LATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDG----FIKPAEDLKHLFAQKG 232 (286)
T ss_pred HHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccccc----ccCCHHHHHHHHHhcC
Confidence 4444444433 44567899999943 222222345677889999999999999777643 3445899999999999
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
+..+++||+-|+.|.. |+-.+..|...| .+|+++||++.+|..
T Consensus 233 l~~~~p~~~sC~~Gis-a~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 233 LKLSKPVIVSCGTGIS-ASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred cccCCCEEEeeccchh-HHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999999984 888888999999 779999999999985
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=102.20 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=78.6
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi 154 (270)
...|+|++..+++.++++++||+| ..-||+-||-.||++.+...+..- ++.+++.+..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtR---------N~YE~~iG~F~gAv~p~~~tFref----------P~~v~~~~~~--- 169 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTR---------NDYEVAIGHFEGAVEPDIETFREF----------PAWVEENLDL--- 169 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcC---------cceeEeeeeecCccCCChhhhhhh----------HHHHHHHHHh---
Confidence 568999999999999999999999 468999999999999987765431 2333443433
Q ss_pred CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 155 ~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
-++++||.||-+|++ ...+...|...||++|+-|+||+-.+-.
T Consensus 170 ~~~KkVvmyCTGGIR-CEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 170 LKDKKVVMYCTGGIR-CEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred ccCCcEEEEcCCcee-ehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 367799999999987 3334344556699999999999987754
No 57
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.93 E-value=2.3e-09 Score=104.55 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhhCCCCC----ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEecC
Q 024216 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (270)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPG----Av~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~ 165 (270)
++.+|||+| ++.+|..||||| |+|+|+.++.. .+.. ++++++||+||.
T Consensus 406 ~~~~lIDVR---------~~~E~~~~hI~g~~~~a~niP~~~l~~-----------------~~~~--l~~~~~iivyC~ 457 (482)
T PRK01269 406 PDDVIIDIR---------SPDEQEDKPLKLEGVEVKSLPFYKLST-----------------QFGD--LDQSKTYLLYCD 457 (482)
T ss_pred CCCEEEECC---------CHHHHhcCCCCCCCceEEECCHHHHHH-----------------HHhh--cCCCCeEEEECC
Confidence 357899999 789999999999 99999876532 2333 477889999999
Q ss_pred CChhHHHHHHHHHHHcCCCcEEEec
Q 024216 166 KGIFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 166 ~g~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
.|.+ |..++..|+.+||+||+++-
T Consensus 458 ~G~r-S~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 458 RGVM-SRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCHH-HHHHHHHHHHcCCccEEecC
Confidence 9986 88888999999999998874
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.8e-09 Score=98.68 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=68.0
Q ss_pred CcccHHHHHHhhCCC------CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 024216 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l 149 (270)
..||++.|+.++... ..+||||| -+-||..|||+||+|+.-.+... ..+
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR---------~pyEY~GGHIkgavnl~~~~~~~----------------~~f 210 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCR---------YPYEYEGGHIKGAVNLYSKELLQ----------------DFF 210 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeC---------CcccccCcccccceecccHhhhh----------------hhh
Confidence 489999999988641 25699999 56899999999999998664221 111
Q ss_pred -HHcCC---CCCCcEEEecCCChhHHHHHHHHHHH------------cCCCcEEEecccHHHHHhC
Q 024216 150 -SALGL---ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 150 -~~~Gi---~~d~~VVvYc~~g~~~A~ra~~~L~~------------~G~~~V~vLdGG~~~W~~~ 199 (270)
.+-|. .+...+|+||........+++..|+. +-|..++||+|||.+|...
T Consensus 211 ~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 211 LLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 11111 12456799998544334555555652 4556899999999999864
No 59
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.61 E-value=3.6e-08 Score=90.68 Aligned_cols=102 Identities=24% Similarity=0.300 Sum_probs=79.3
Q ss_pred CCcccHHHHHHhhCC-CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 75 EPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
+--||..++++.+++ ...++|||| |..+|+-.|+|+|+|||+.++.....+ +..+.+
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~~------------~~~~~~- 373 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSGK------------KLQGDL- 373 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhhh------------hhcccc-
Confidence 457899999999987 458999999 889999999999999999987654331 111111
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCC-cEEEecccHHHHHhC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 199 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~-~V~vLdGG~~~W~~~ 199 (270)
-....+|+|.|+.|+. +.++.|.|+..++. +|+-+-||+.+|.+.
T Consensus 374 ~~~~~~I~ViCrrGNd-SQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 374 NTESKDIFVICRRGND-SQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred cccCCCEEEEeCCCCc-hHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 1345669999999884 89999999976664 677889999999874
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.15 E-value=5.3e-06 Score=75.70 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=71.5
Q ss_pred CcccHHHHHHhhCCC------CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 024216 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l 149 (270)
+.||++-|+..++.. +.+||||| -+-||..|||-+||||.-. +++.-.+
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCR---------FeYEY~GGHIinaVNi~s~----------------~~l~~~F 296 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCR---------FEYEYRGGHIINAVNISST----------------KKLGLLF 296 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeec---------ceeeecCceeeeeeecchH----------------HHHHHHH
Confidence 479999999988642 47899999 4679999999999999743 2333334
Q ss_pred HHcCCCCCCcEEEecCCChhHHHHHHHHHHHc------------CCCcEEEecccHHHHHh
Q 024216 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 150 ~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~------------G~~~V~vLdGG~~~W~~ 198 (270)
...-++.-.-+|+.|+-....|.+++.-|+-. -|..|+||+||+.+.-.
T Consensus 297 ~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 RHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 33224455668999986555578887777643 34689999999987653
No 61
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=97.51 E-value=1.8e-05 Score=73.27 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=34.0
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCccc
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDG 127 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~ 127 (270)
++-+++++.+.+.+. ..++|+| +...|+.+||||++++|...
T Consensus 14 ~i~~~~~~~~~l~~~-~~~~d~r---------g~i~~a~egIngtis~~~~~ 55 (314)
T PRK00142 14 PIEDPEAFRDEHLAL-CKSLGLK---------GRILVAEEGINGTVSGTIEQ 55 (314)
T ss_pred cCCCHHHHHHHHHHH-HHHcCCe---------eEEEEcCCCceEEEEecHHH
Confidence 456778888877553 5789999 78999999999999999743
No 62
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.77 E-value=0.0012 Score=59.33 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=68.8
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccc-----cCCCCCCCCCCHHHHHHHHHH
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVAD-----RTTNLPHMLPSEEAFAAAVSA 151 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~-----~~~~~~~~lp~~~~f~~~l~~ 151 (270)
-+|++||.+.+..++++++||| + +..||.+|+++-+..+.. ...++...+|........-.+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~ 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc
Confidence 4789999999998999999999 4 567999999988775422 122233444443222111111
Q ss_pred cCCCCCCcEEEecCCCh-----hHHHHHH----HHHHHcCCCcEEEecccHHHHHhC
Q 024216 152 LGLENKDGLVVYDGKGI-----FSAARVW----WMFRVFGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 152 ~Gi~~d~~VVvYc~~g~-----~~A~ra~----~~L~~~G~~~V~vLdGG~~~W~~~ 199 (270)
-+..+||.||.+.. ..++++. .-++..|+. ++.|.|||+..+++
T Consensus 72 ---c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 ---CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred ---CCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 13467899997511 1233333 345677886 99999999988764
No 63
>PHA00738 putative HTH transcription regulator
Probab=92.23 E-value=0.081 Score=41.34 Aligned_cols=31 Identities=6% Similarity=-0.125 Sum_probs=28.2
Q ss_pred ccccchhhhhhhcCcceeecCCcceeeeecC
Q 024216 17 ISYKPQVFTSLLNKKLFYSRPKHTHTTLKTS 47 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (270)
.+.-|+||+.|+.+|++..++.|+.++|++.
T Consensus 40 QptVS~HLKvLreAGLV~srK~Gr~vyY~Ln 70 (108)
T PHA00738 40 YTTVLRHLKILNEQGYIELYKEGRTLYAKIR 70 (108)
T ss_pred HHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 3445999999999999999999999999987
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.02 E-value=0.84 Score=35.82 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=38.0
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhh-----hhCCCCCceecCcccccccCCCCCCCCCC---HHHHHHH
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-----QVAHIPGALFFDVDGVADRTTNLPHMLPS---EEAFAAA 148 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey-----~~gHIPGAv~ip~~~l~~~~~~~~~~lp~---~~~f~~~ 148 (270)
-++++++.++.+.+=-.||+.|+.--.+......+. +.| + .-+++|+.. .-++ .+.|.+.
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~G-l-~y~~iPv~~----------~~~~~~~v~~f~~~ 81 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALG-L-QYVHIPVDG----------GAITEEDVEAFADA 81 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----T----------TT--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcC-C-eEEEeecCC----------CCCCHHHHHHHHHH
Confidence 378999998877665689999932110000000000 011 1 124555432 1123 3456666
Q ss_pred HHHcCCCCCCcEEEecCCChhHHHHHHHHHH
Q 024216 149 VSALGLENKDGLVVYDGKGIFSAARVWWMFR 179 (270)
Q Consensus 149 l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~ 179 (270)
|.++ ..+|.+||++|.+ +..+ |.|.
T Consensus 82 l~~~----~~Pvl~hC~sG~R-a~~l-~~l~ 106 (110)
T PF04273_consen 82 LESL----PKPVLAHCRSGTR-ASAL-WALA 106 (110)
T ss_dssp HHTT----TTSEEEE-SCSHH-HHHH-HHHH
T ss_pred HHhC----CCCEEEECCCChh-HHHH-HHHH
Confidence 6653 5699999999987 5544 4443
No 65
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.52 E-value=1 Score=43.68 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=63.2
Q ss_pred cccHHHHHHhhC--CC--CcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 024216 77 VVSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (270)
Q Consensus 77 lIs~~eL~~~l~--~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~ 152 (270)
.|+.-+|.+.-. .+ +..|+|+| |.+.|..||+-.|.|++-.- |+-.+++|+..+..+
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~l----------mlqeP~~Fa~av~sL 368 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVL----------MLQEPEKFAIAVNSL 368 (669)
T ss_pred chhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHH----------HhcCHHHHHHHHHHH
Confidence 466777665422 22 35799999 88999999999999987543 344567777655432
Q ss_pred ------CCCCC-----CcEEEecCCCh---hHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 153 ------GLENK-----DGLVVYDGKGI---FSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 153 ------Gi~~d-----~~VVvYc~~g~---~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
-|..+ ..+.+.+.+.. ...--+..++-..+-.-|.++.||+.+..
T Consensus 369 l~aqrqtie~~s~aggeHlcfmGsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 369 LCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHhhhccccCCcceEEEeccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 23333 34444443211 11233444555556667999999998765
No 66
>COG2603 Predicted ATPase [General function prediction only]
Probab=90.48 E-value=0.75 Score=42.21 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcc
Q 024216 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD 126 (270)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~ 126 (270)
.+.-+|||| .+-+|..||-|+++|+|+-
T Consensus 14 ~~~~lid~r---------ap~ef~~g~~~ia~nl~~~ 41 (334)
T COG2603 14 ADTPLIDVR---------APIEFENGAMPIAINLPLM 41 (334)
T ss_pred cCCceeecc---------chHHHhcccchhhhccccc
Confidence 346799999 7899999999999999964
No 67
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.13 E-value=0.24 Score=40.10 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.0
Q ss_pred cccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 244 LIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 244 ~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
..++++++++.++.+++++||+|.++|
T Consensus 23 ~sv~~~qvk~L~~~~~~~llDVRepeE 49 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQHPDVVLLDVREPEE 49 (136)
T ss_pred EEEEHHHHHHHhcCCCEEEEeecCHHH
Confidence 457899999999888899999999876
No 68
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=87.94 E-value=4.4 Score=32.60 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHH-HHHcCCCcEEEecccHHHHHhCCCCcc
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWM-FRVFGHDRVWVLDGGLPRWRASGYDVE 204 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~-L~~~G~~~V~vLdGG~~~W~~~G~pv~ 204 (270)
.+.|.+.+.. .+.+|++||.+|.+ ++-+|.+ +...|...-.++. .=+..|+.++
T Consensus 75 v~~f~~~~~~----~~~pvL~HC~sG~R-t~~l~al~~~~~g~~~~~i~~----~~~~~G~~~~ 129 (135)
T TIGR01244 75 VETFRAAIGA----AEGPVLAYCRSGTR-SSLLWGFRQAAEGVPVEEIVR----RAQAAGYDLS 129 (135)
T ss_pred HHHHHHHHHh----CCCCEEEEcCCChH-HHHHHHHHHHHcCCCHHHHHH----HHHHcCCCcc
Confidence 3556666653 36889999999985 5544433 3445664222332 2255677665
No 69
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=87.02 E-value=0.34 Score=38.50 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=26.9
Q ss_pred ccchhhhhhhcCcceeecCCcceeeeecC
Q 024216 19 YKPQVFTSLLNKKLFYSRPKHTHTTLKTS 47 (270)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (270)
.-|+||+.|+.+|++..+++|..++|++.
T Consensus 46 tvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~ 74 (117)
T PRK10141 46 KISRHLALLRESGLLLDRKQGKWVHYRLS 74 (117)
T ss_pred HHHHHHHHHHHCCceEEEEEcCEEEEEEC
Confidence 34999999999999999999999999986
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=86.38 E-value=2.3 Score=39.43 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhh---CCCC-CceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 024216 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---AHIP-GALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 150 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~---gHIP-GAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~ 150 (270)
...+...+|.+.+.+.+..|||+| +..+|.. |||| |. -|+...|+..|.
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr---------~~a~hrGs~fG~~~~~~------------------qpsq~~fe~~L~ 187 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLE---------GLANHRGSSFGALGLGP------------------QPSQKRFENALA 187 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECC---------chHHhcCcccCCCCCCC------------------CCchHHHHHHHH
Confidence 467899999999988888999999 7889987 8888 41 123334443321
Q ss_pred -Hc-CCCCCCcEEEecCCC
Q 024216 151 -AL-GLENKDGLVVYDGKG 167 (270)
Q Consensus 151 -~~-Gi~~d~~VVvYc~~g 167 (270)
.+ .+++..+||+=|.+.
T Consensus 188 ~~l~~~~~~~~i~~e~es~ 206 (311)
T TIGR03167 188 EALRRLDPGRPIFVEDESR 206 (311)
T ss_pred HHHHhCCCCceEEEEeCch
Confidence 11 356778888888763
No 71
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=86.13 E-value=0.17 Score=50.13 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=59.1
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC-
Q 024216 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (270)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~Gi- 154 (270)
+-||++++..+ ..+.++|.| ...+|..+|+++++|+|+.. .+. +++...--.|+
T Consensus 622 prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~~-~ea------------~l~~~~~l~~~~ 676 (725)
T KOG1093|consen 622 PRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFNN-HEA------------DLDWLRFLPGIV 676 (725)
T ss_pred ccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCccc-hHH------------HHHHhhcchHhH
Confidence 45777777665 347799999 68999999999999999872 111 11111100011
Q ss_pred -CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHH
Q 024216 155 -ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (270)
Q Consensus 155 -~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~ 195 (270)
..+..+|+|..+.-. +++....+..+-+.+..+|.+|+.+
T Consensus 677 ~~~~~~~v~~~~~~K~-~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 677 CSEGKKCVVVGKNDKH-AAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred HhhCCeEEEeccchHH-HHHHhhHHHHhcccHHHHHHHHHhh
Confidence 234556666654443 4554455555557788899999873
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.38 E-value=4.6 Score=32.35 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=44.4
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhh----hhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 024216 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY----QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (270)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey----~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~~G 153 (270)
++++++.+....+=..||.-|+.--.+.....+.- ...-+. -.++|...- .-.--+.+.|++.|.+.
T Consensus 16 i~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~-------~iT~~dV~~f~~Al~ea- 86 (130)
T COG3453 16 ISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGG-------GITEADVEAFQRALDEA- 86 (130)
T ss_pred CCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCC-------CCCHHHHHHHHHHHHHh-
Confidence 77888887766655679999943211110000100 111122 223443210 00011246788888875
Q ss_pred CCCCCcEEEecCCChhHHHHH
Q 024216 154 LENKDGLVVYDGKGIFSAARV 174 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra 174 (270)
+-+|..||++|.+ +..+
T Consensus 87 ---egPVlayCrsGtR-s~~l 103 (130)
T COG3453 87 ---EGPVLAYCRSGTR-SLNL 103 (130)
T ss_pred ---CCCEEeeecCCch-HHHH
Confidence 7789999999986 4444
No 73
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=80.45 E-value=2.2 Score=35.59 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.5
Q ss_pred ccCCccccCHHHHHHHhhCCCcEEEccCCCC
Q 024216 239 KFQPHLIWTLEQVKRNIEEGTYQLVDARSKA 269 (270)
Q Consensus 239 ~~~~~~~i~~~~v~~~~~~~~~~lIDaR~~~ 269 (270)
+......++.+++++.+++++.+|||+|+++
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~ 61 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRP 61 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCc
Confidence 3455567999999999988889999999754
No 74
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=74.90 E-value=12 Score=37.36 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=21.8
Q ss_pred CcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEe
Q 024216 158 DGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 158 ~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vL 189 (270)
..|+|+|+.|+ ...-.++..|...|++ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999998654 2344456678889997 6655
No 75
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=72.98 E-value=2.7 Score=34.89 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=24.5
Q ss_pred cCCCCCCcEEEec-CC---ChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 152 LGLENKDGLVVYD-GK---GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 152 ~Gi~~d~~VVvYc-~~---g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
+|++++-.+++.+ ++ .......++.+|+.+|..++..||||-..-.
T Consensus 95 iG~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp EEE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred EEEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 3566565665444 43 2345677778898999999999999975433
No 76
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=67.90 E-value=28 Score=28.58 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCCh-hHHHHHHHHHHHcCCC
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGI-FSAARVWWMFRVFGHD 184 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~-~~A~ra~~~L~~~G~~ 184 (270)
.+.|.++|..+ .+...+|+++|..|- +..--++.+|..+|..
T Consensus 110 ~~~~~~~~~~l-~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 110 AEAYRKIFELL-ADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHHHHHH-H-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHh-ccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 57777777665 223369999998765 4444455678888886
No 77
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=67.74 E-value=14 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHcCCCCCCcEEEecCCCh-hHHHH-HHHHHHHcCC
Q 024216 146 AAAVSALGLENKDGLVVYDGKGI-FSAAR-VWWMFRVFGH 183 (270)
Q Consensus 146 ~~~l~~~Gi~~d~~VVvYc~~g~-~~A~r-a~~~L~~~G~ 183 (270)
.+++... +..+.+|+|+|..|. ++.+- +.+++...|+
T Consensus 71 ~~~i~~~-~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 71 VDFIDDA-REKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHH-HhcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 3444432 345689999999876 43333 3345555554
No 78
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=61.72 E-value=14 Score=31.11 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCCh-hHHHHHH-HHHHHcCCCcE
Q 024216 144 AFAAAVSALGLENKDGLVVYDGKGI-FSAARVW-WMFRVFGHDRV 186 (270)
Q Consensus 144 ~f~~~l~~~Gi~~d~~VVvYc~~g~-~~A~ra~-~~L~~~G~~~V 186 (270)
++..++.+. +.+..+|+|.|.+|. ++++-++ |++.+.|..++
T Consensus 93 ~~v~~i~~~-~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~ 136 (180)
T COG2453 93 KIVDFIEEA-LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLA 136 (180)
T ss_pred HHHHHHHHH-HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCH
Confidence 334445444 456679999999886 5555544 77777666544
No 79
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.25 E-value=76 Score=25.45 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEecCCC--h-hHHHHHHHHHHHcCCCcEEEeccc------HHHHHhCCCC
Q 024216 139 LPSEEAFAAAVSALGLENKDGLVVYDGKG--I-FSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGYD 202 (270)
Q Consensus 139 lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g--~-~~A~ra~~~L~~~G~~~V~vLdGG------~~~W~~~G~p 202 (270)
.-++++|.+...+ .+-.+|+.|... . .....+...|+..|..++.++-|| +..|++.|..
T Consensus 39 ~~s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 39 FQTPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 3456666665554 356688888632 2 345667778889898788888887 3456666653
No 80
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=55.93 E-value=29 Score=31.45 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.-|...|.+.|+..++++++...+|- |..+.+.|...|.+++.+++=-.
T Consensus 108 ~Gf~~~L~~~~~~~~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 108 IAIAKLLASYQVPPDLVVALRGSGGM--AKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCCH
Confidence 34556676667766667877776543 44456778899999999987654
No 81
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=53.98 E-value=8.6 Score=36.49 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.3
Q ss_pred ccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 245 IWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
.++.+++.+.+++++.+|||+|+++|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E 297 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHE 297 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHH
Confidence 58899999988877789999999865
No 82
>PRK01415 hypothetical protein; Validated
Probab=52.41 E-value=11 Score=33.78 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=23.3
Q ss_pred ccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024216 243 HLIWTLEQVKRNIEEGTYQLVDARSKAR 270 (270)
Q Consensus 243 ~~~i~~~~v~~~~~~~~~~lIDaR~~~~ 270 (270)
...++.+++.+.+++++.++||+|.+.|
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E 138 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYE 138 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence 4458889999999888999999998753
No 83
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.95 E-value=1.3e+02 Score=23.47 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEecCCC---hhHHHHHHHHHHHcCCCcEEEeccc------HHHHHhCCC
Q 024216 140 PSEEAFAAAVSALGLENKDGLVVYDGKG---IFSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGY 201 (270)
Q Consensus 140 p~~~~f~~~l~~~Gi~~d~~VVvYc~~g---~~~A~ra~~~L~~~G~~~V~vLdGG------~~~W~~~G~ 201 (270)
.+.+++.+...+. +-.+|+.|... ...+......|+..|..++.++-|| +..|++.|+
T Consensus 37 vp~e~~~~~a~~~----~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 37 QTPEEIVEAAIQE----DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred CCHHHHHHHHHHc----CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 3445565555553 44577777542 2335566778888899888888887 234666664
No 84
>PLN02727 NAD kinase
Probab=47.76 E-value=73 Score=34.07 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCh-hhhh----hCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 024216 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPF-QEYQ----VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (270)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~-~ey~----~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (270)
-++++++..+.+.+=-.||+.|..-...+ +. .+-+ ..-| .-+++|+.. ...|+.++++++...
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E~~q--~~~~ee~eAae~~GL-~yVhIPVs~---------~~apt~EqVe~fa~~ 335 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIVKDN--FYQAAVDDAISSGKI-EVVKIPVEV---------RTAPSAEQVEKFASL 335 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCcCCC--chhHHHHHHHHHcCC-eEEEeecCC---------CCCCCHHHHHHHHHH
Confidence 47889888776655457999993211100 00 0000 0111 114555421 123455555554443
Q ss_pred cCCCCCCcEEEecCCChh
Q 024216 152 LGLENKDGLVVYDGKGIF 169 (270)
Q Consensus 152 ~Gi~~d~~VVvYc~~g~~ 169 (270)
+--....+|++||.+|.+
T Consensus 336 l~~slpkPVLvHCKSGar 353 (986)
T PLN02727 336 VSDSSKKPIYLHSKEGVW 353 (986)
T ss_pred HHhhcCCCEEEECCCCCc
Confidence 211347899999998873
No 85
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=47.56 E-value=24 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=15.7
Q ss_pred CCCCCcEEEecCCChhHHHH-HHHHHHHcC
Q 024216 154 LENKDGLVVYDGKGIFSAAR-VWWMFRVFG 182 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~r-a~~~L~~~G 182 (270)
+.++.+|+++|.+|...+.- ++-+|-.+|
T Consensus 130 L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 130 LENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 35688999999988643433 444555555
No 86
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=47.42 E-value=48 Score=25.96 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCCCcEEEecCCCh-hHHHH-HHHHHHHcCCC
Q 024216 146 AAAVSALGLENKDGLVVYDGKGI-FSAAR-VWWMFRVFGHD 184 (270)
Q Consensus 146 ~~~l~~~Gi~~d~~VVvYc~~g~-~~A~r-a~~~L~~~G~~ 184 (270)
.+++... +..+.+|+|+|..|. ++++- ++|++...|++
T Consensus 68 ~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 68 VEFIEDA-EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHH-hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 3444443 567889999999886 54443 44566666664
No 87
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=44.52 E-value=47 Score=23.36 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEecC-CChhHHHHHHHHHHHcCCCcEEEeccc
Q 024216 140 PSEEAFAAAVSALGLENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDGG 192 (270)
Q Consensus 140 p~~~~f~~~l~~~Gi~~d~~VVvYc~-~g~~~A~ra~~~L~~~G~~~V~vLdGG 192 (270)
|++.-|...+..++++..+.++|=|. .....++ +..|+.-|.++.|-
T Consensus 5 P~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a------~~~G~~~ilV~tG~ 52 (75)
T PF13242_consen 5 PSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAA------KAAGIDTILVLTGV 52 (75)
T ss_dssp TSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHH------HHTTSEEEEESSSS
T ss_pred CcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHH------HHcCCcEEEECCCC
Confidence 67888999999999998887777666 3332233 35799877777763
No 88
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.42 E-value=33 Score=33.06 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEecCC---C------hhHHHHHHHHHHHcCCCcEEEecccHHHHHhC
Q 024216 138 MLPSEEAFAAAVSALGLENKDGLVVYDGK---G------IFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (270)
Q Consensus 138 ~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~---g------~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~ 199 (270)
.+.+.+.+.+.+.. . ++.+||+- + +.-.-.....|+.+||+ +.+|-||+.+|...
T Consensus 17 ~i~~ee~l~~ll~~-----~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 17 QITDEEELRKLLEE-----G-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred ccCcHHHHHHHHhc-----C-CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 34456666666653 2 78899863 2 11223334557889997 99999999999864
No 89
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=43.02 E-value=59 Score=29.79 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCC---CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHH
Q 024216 142 EEAFAAAVSALGLEN---KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~---d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~ 194 (270)
..-|...|.+.+++. ++.+++...+|. |..+.+.|...|.+++.++|=-..
T Consensus 108 ~~G~~~~L~~~~~~~~~~~~~vlilGAGGA--arAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 108 GIGFLRALKEFGLPVDVTGKRVLILGAGGA--ARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred HHHHHHHHHhcCCCcccCCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEeCCHH
Confidence 455777788766533 466777766553 555678999999999999998654
No 90
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=40.96 E-value=63 Score=22.96 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCCCCcEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 154 i~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
+.....|++|...++....++-..|+..|++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 3567789999999888888999999999987
No 91
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.70 E-value=87 Score=25.98 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHcCCCCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEE
Q 024216 150 SALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWV 188 (270)
Q Consensus 150 ~~~Gi~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~v 188 (270)
..++-.+..+|++.|+.|+ ..+-.++..|...|++ |.+
T Consensus 18 ~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 18 KLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp HHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 3333467889999998765 2345566778899997 766
No 92
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=37.47 E-value=80 Score=28.81 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCC-CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEeccc
Q 024216 143 EAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (270)
Q Consensus 143 ~~f~~~l~~~Gi~-~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG 192 (270)
.-|...|.+.|++ ++++++|...+|. |..+++.|...|.+++.+++=-
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGa--arAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGA--STAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCC
Confidence 4466667766665 4566777665443 3335567888999999998754
No 93
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=36.16 E-value=36 Score=27.05 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCCcE-EEecCCChhHHHHHHHHHHHc-CCCcEEEecc
Q 024216 142 EEAFAAAVSALGLENKDGL-VVYDGKGIFSAARVWWMFRVF-GHDRVWVLDG 191 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~V-VvYc~~g~~~A~ra~~~L~~~-G~~~V~vLdG 191 (270)
.+.+.+.+.+.+|..++-+ |++.-+....|+.=+..++.+ |+++|-+|+-
T Consensus 23 ~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc~ 74 (117)
T TIGR01796 23 AELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMCA 74 (117)
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceecc
Confidence 4567788899999887766 566544434455555677777 9999988874
No 94
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.13 E-value=1.1e+02 Score=25.11 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCcEEEecCC--Ch-hHHHHHHHHHHHcCCCcEEEecccH
Q 024216 136 PHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GI-FSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 136 ~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~--g~-~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.+.+.+++++.... +..+-.+|+.|.- ++ .....+...|+..|.+.+.++-||.
T Consensus 46 ~g~~~tp~e~v~aA----~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 46 LGLFQTPEEAVRAA----VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred cCCcCCHHHHHHHH----HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 35566666665544 3467778887753 22 4577788999999999999899885
No 95
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=36.02 E-value=86 Score=28.10 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHcC--CCCCCcEEEecCCCh-hHHHHHHHHHHHcCCC
Q 024216 137 HMLPSEEAFAAAVSALG--LENKDGLVVYDGKGI-FSAARVWWMFRVFGHD 184 (270)
Q Consensus 137 ~~lp~~~~f~~~l~~~G--i~~d~~VVvYc~~g~-~~A~ra~~~L~~~G~~ 184 (270)
+..|+.+.+++++.-+. +..+..|+|.|..|. ++..-++..|-..|+.
T Consensus 148 g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 148 GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 34566665555443321 346778999998876 4444444444446764
No 96
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=35.36 E-value=1.8e+02 Score=22.69 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCCCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEe
Q 024216 141 SEEAFAAAVSALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 141 ~~~~f~~~l~~~Gi~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vL 189 (270)
+.+++...+.+. +++..|++.++... ..-..+...++..|+++|.+.
T Consensus 70 ~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 70 SLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 355667777765 56778888887643 345667788999999998765
No 97
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.17 E-value=1.1e+02 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHcCCCCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEec
Q 024216 148 AVSALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 148 ~l~~~Gi~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vLd 190 (270)
..+++.......|+|+|+.|+ ...--++..|...|++ |.++-
T Consensus 40 i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 40 ILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred HHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 334432222677999998654 3355566778899986 66444
No 98
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=34.96 E-value=1.5e+02 Score=24.03 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHcCCC-CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEec
Q 024216 141 SEEAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 141 ~~~~f~~~l~~~Gi~-~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
+++..-++++..|++ .++.|+++.++... ...++.+|...|.. |.+.+
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~v-G~pla~lL~~~gat-V~~~~ 59 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIV-GAPLQCLLQRDGAT-VYSCD 59 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchH-HHHHHHHHHHCCCE-EEEeC
Confidence 356777888888887 67889999887664 66677888888875 77776
No 99
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=33.12 E-value=28 Score=33.94 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=26.4
Q ss_pred cccchhhhhhhcCcceeecCCcceeeeecCCC
Q 024216 18 SYKPQVFTSLLNKKLFYSRPKHTHTTLKTSSS 49 (270)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (270)
+.-||||..| .++|..+.+|+.+.|++.+.
T Consensus 28 ~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~ 57 (442)
T PRK09775 28 ATLSRLLAAL--GDQVVRFGKARATRYALLRP 57 (442)
T ss_pred HHHHHHHHHh--hcceeEeccCceEEEEeccc
Confidence 4459999999 89999999999999998843
No 100
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=33.01 E-value=81 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCC-cEEEec
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLD 190 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~-~V~vLd 190 (270)
+..+|++|...++....++..+|..+|.+ .+..++
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 35679999999888899999999999986 244444
No 101
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=32.77 E-value=29 Score=33.05 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred CccccCHHHHHHHhhCC-CcEEEccCCCCC
Q 024216 242 PHLIWTLEQVKRNIEEG-TYQLVDARSKAR 270 (270)
Q Consensus 242 ~~~~i~~~~v~~~~~~~-~~~lIDaR~~~~ 270 (270)
....++.+++++.++++ +.+|||+|++.|
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~e 314 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVE 314 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHH
Confidence 34568999999988753 578999998753
No 102
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=32.22 E-value=1.1e+02 Score=27.72 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCC---CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGL---ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi---~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.-|...|.+.|. -+++.++|...+|. |..+.+.|..+|.+++.+++=..
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGa--arai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGT--SRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHH--HHHHHHHHHHcCCCeEEEEeCCH
Confidence 445666766653 24667777765543 44456778899999999998543
No 103
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=32.17 E-value=65 Score=32.56 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEecCC---ChhHHHHHHHHHHHcCCCcEEEe
Q 024216 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGK---GIFSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 137 ~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~---g~~~A~ra~~~L~~~G~~~V~vL 189 (270)
..++..++..+.+.+. |.+..+|+||.+- |..+++-++..|+.+|.+++..+
T Consensus 50 ~~l~~m~~a~~ri~~a-i~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~ 104 (575)
T PRK11070 50 QQLSGIEKAVELLYNA-LREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYL 104 (575)
T ss_pred HHhhCHHHHHHHHHHH-HHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEE
Confidence 3456666666666554 7788899999653 45556667788999999656443
No 104
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=31.96 E-value=1.2e+02 Score=24.12 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=30.5
Q ss_pred CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHH
Q 024216 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (270)
Q Consensus 156 ~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~ 197 (270)
++.++++.+.+|. +..+...|...|.+++.+++--.....
T Consensus 11 ~~~~vlviGaGg~--ar~v~~~L~~~g~~~i~i~nRt~~ra~ 50 (135)
T PF01488_consen 11 KGKRVLVIGAGGA--ARAVAAALAALGAKEITIVNRTPERAE 50 (135)
T ss_dssp TTSEEEEESSSHH--HHHHHHHHHHTTSSEEEEEESSHHHHH
T ss_pred CCCEEEEECCHHH--HHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 5677888876543 566678888899999999998876543
No 105
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=31.92 E-value=1.1e+02 Score=26.82 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHHHHHcCCC-CCCcEEEecCCChhHHHHHHHHHHHcCCC--cEEEeccc
Q 024216 145 FAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHD--RVWVLDGG 192 (270)
Q Consensus 145 f~~~l~~~Gi~-~d~~VVvYc~~g~~~A~ra~~~L~~~G~~--~V~vLdGG 192 (270)
|...+...|.+ ++.+|+++..++. +.-+++.|...|.+ +++++|--
T Consensus 12 ~~~al~~~g~~l~~~rvlvlGAGgA--g~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 12 LLNALKLVGKKIEEVKIVINGAGAA--GIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHHHhCCCccCCEEEEECchHH--HHHHHHHHHHcCcCcceEEEEeCC
Confidence 33444444442 4677888776443 44556788888998 99988853
No 106
>PRK12361 hypothetical protein; Provisional
Probab=31.89 E-value=1.7e+02 Score=29.01 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHc--CCCCCCcEEEecCCCh-hHHHHHH-HHH
Q 024216 140 PSEEAFAAAVSAL--GLENKDGLVVYDGKGI-FSAARVW-WMF 178 (270)
Q Consensus 140 p~~~~f~~~l~~~--Gi~~d~~VVvYc~~g~-~~A~ra~-~~L 178 (270)
|+.++|++.+..+ .+..+.+|+|+|..|. ++++-+. |++
T Consensus 156 p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 156 PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 4556666544431 1345788999999876 5555433 444
No 107
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=31.88 E-value=1e+02 Score=24.02 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=14.7
Q ss_pred cHHHHHHhhCCCCc-EEEEec
Q 024216 79 SVDWLHANLREPDL-KVLDAS 98 (270)
Q Consensus 79 s~~eL~~~l~~~~~-vIIDvR 98 (270)
+.+++.+.+...++ +|||||
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR 21 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVR 21 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEEC
Confidence 35677777766665 899999
No 108
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=31.86 E-value=47 Score=23.53 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=21.4
Q ss_pred ccccCHHHHHHHhh-CCCcEEEccCCCC
Q 024216 243 HLIWTLEQVKRNIE-EGTYQLVDARSKA 269 (270)
Q Consensus 243 ~~~i~~~~v~~~~~-~~~~~lIDaR~~~ 269 (270)
.-.||+++|++.+. ..+++++|+.+-+
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktge 44 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGE 44 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCc
Confidence 34599999999885 4679999998643
No 109
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=31.80 E-value=94 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=23.1
Q ss_pred cEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 159 ~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
.|++|...++....++...|+..|.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 58999999888899999999999886
No 110
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=31.65 E-value=2.1e+02 Score=21.80 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecc
Q 024216 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (270)
Q Consensus 143 ~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdG 191 (270)
+++.+.+.+ ++.++.|++.|+-++.+-... .+.....+++++++.|
T Consensus 45 ~~l~~~i~~--~~~~~~vlil~Dl~ggsp~n~-a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEE--LDEGDGVLILTDLGGGSPFNE-AARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHH--CCTTSEEEEEESSTTSHHHHH-HHHHHCTSTTEEEEES
T ss_pred HHHHHHHHh--ccCCCcEEEEeeCCCCccchH-HHHHhccCCCEEEEec
Confidence 455566655 466788888877433222222 2333456666777776
No 111
>PRK05852 acyl-CoA synthetase; Validated
Probab=31.44 E-value=1.1e+02 Score=29.57 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~ 195 (270)
...+...|.++|+.+++.|.+|+..+.. ...+++.+...|.- +..++-++..
T Consensus 53 ~~~~a~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~-~v~l~~~~~~ 104 (534)
T PRK05852 53 VDDLAGQLTRSGLLPGDRVALRMGSNAE-FVVALLAASRADLV-VVPLDPALPI 104 (534)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCcHH-HHHHHHHHHHcCcE-EeecCCCCCc
Confidence 3567888999999999999999988764 55566777777875 4455655543
No 112
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.33 E-value=1.3e+02 Score=26.82 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCC---CCCcEEEecCCChhHHHHHHH----HHHHcCCCcEEEe
Q 024216 143 EAFAAAVSALGLE---NKDGLVVYDGKGIFSAARVWW----MFRVFGHDRVWVL 189 (270)
Q Consensus 143 ~~f~~~l~~~Gi~---~d~~VVvYc~~g~~~A~ra~~----~L~~~G~~~V~vL 189 (270)
+.+-+.+... ++ ++..+|+.|.+....+..++. +|...||.+|++-
T Consensus 121 e~~v~aik~~-~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 121 EICVEAIKDQ-IPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHHHh-cCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 3444444433 44 677789999875543444433 4677899988854
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.78 E-value=3.2e+02 Score=23.98 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=22.6
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcE
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRV 186 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V 186 (270)
.+..|+||+.....-..+..+.+.+|+.-+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCccee
Confidence 677899998776655666777889998744
No 114
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=30.73 E-value=20 Score=24.35 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=18.8
Q ss_pred ccchhhhhhhcCcceeecCCcc
Q 024216 19 YKPQVFTSLLNKKLFYSRPKHT 40 (270)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (270)
.-++||+.|..+|++...+.|+
T Consensus 40 t~s~hL~~L~~aGli~~~~~gr 61 (61)
T PF12840_consen 40 TVSYHLKKLEEAGLIEVEREGR 61 (61)
T ss_dssp HHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHHHCCCeEEeccCC
Confidence 3489999999999999888764
No 115
>PRK05320 rhodanese superfamily protein; Provisional
Probab=30.04 E-value=32 Score=30.97 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.2
Q ss_pred ccCHHHHHHHhhC------CCcEEEccCCCCC
Q 024216 245 IWTLEQVKRNIEE------GTYQLVDARSKAR 270 (270)
Q Consensus 245 ~i~~~~v~~~~~~------~~~~lIDaR~~~~ 270 (270)
.++.+++.+.+++ ++.+|||+|++.|
T Consensus 111 ~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E 142 (257)
T PRK05320 111 SVDAATLKRWLDQGHDDAGRPVVMLDTRNAFE 142 (257)
T ss_pred eeCHHHHHHHHhccccccCCCeEEEECCCHHH
Confidence 4778888877754 3478999998753
No 116
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=29.66 E-value=1.1e+02 Score=20.00 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=20.9
Q ss_pred cEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 159 ~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
+|++|...++....++...|+..|.+
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~ 26 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIE 26 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCc
Confidence 47888888777788888888888875
No 117
>PRK07411 hypothetical protein; Validated
Probab=29.04 E-value=33 Score=32.73 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.9
Q ss_pred cccCHHHHHHHhhCC--CcEEEccCCCCC
Q 024216 244 LIWTLEQVKRNIEEG--TYQLVDARSKAR 270 (270)
Q Consensus 244 ~~i~~~~v~~~~~~~--~~~lIDaR~~~~ 270 (270)
..++.+++.+.++.. +.+|||+|++.|
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E 310 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNE 310 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHH
Confidence 358899999888643 578999998753
No 118
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=28.86 E-value=1.4e+02 Score=27.16 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCC-CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi-~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.-|...|.+.+. .+++++++...+|- |..+.+.|...|.+++.++|=..
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEcCCH
Confidence 345566655433 24566777766543 44455678889999999998544
No 119
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=28.67 E-value=1.5e+02 Score=26.66 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHH--HHcCCCcEEEecccH
Q 024216 136 PHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF--RVFGHDRVWVLDGGL 193 (270)
Q Consensus 136 ~~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L--~~~G~~~V~vLdGG~ 193 (270)
....|++++|.+.+.++ ..+.+.||+.+=+...+.+.-.+.+ +.+.-.+|+++|-..
T Consensus 58 ~TS~ps~~~~~~~~~~l-~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~ 116 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKL-LEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKS 116 (275)
T ss_pred CcCCCCHHHHHHHHHHH-HhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChH
Confidence 35678999999999876 3344567666543332222222222 233323799999764
No 120
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=27.77 E-value=1.3e+02 Score=19.94 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=19.5
Q ss_pred cEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 159 ~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
.|++|+..++..+.++.++|...|++
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~ 26 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIP 26 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCC
Confidence 36778777666677888888888875
No 121
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.46 E-value=2.5e+02 Score=22.49 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHc-CCCCCCcEEEecCCC--hhHHHHHHHHHHHcCCCcEEEec
Q 024216 141 SEEAFAAAVSAL-GLENKDGLVVYDGKG--IFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 141 ~~~~f~~~l~~~-Gi~~d~~VVvYc~~g--~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
+.+++.+.+... .-+++..|++.++.. +..-..+...++..|+.+|.+..
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~t 138 (141)
T PRK11024 86 PEEQVVAEAKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMT 138 (141)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 345555545443 235677788888764 34466677889999999987653
No 122
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=27.46 E-value=1.3e+02 Score=29.91 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEecCC---ChhHHHHHHHHHHHcCCCcEEEe
Q 024216 138 MLPSEEAFAAAVSALGLENKDGLVVYDGK---GIFSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 138 ~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~---g~~~A~ra~~~L~~~G~~~V~vL 189 (270)
.++..++..+.+.+. |.+.++|++|++. |..+++-++..|+.+|.+ |.++
T Consensus 36 ~l~~~~~a~~~i~~~-i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~-v~~~ 88 (539)
T TIGR00644 36 LLKDMEKAVERIIEA-IENNEKILIFGDYDVDGITSTAILVEFLKDLGVN-VDYY 88 (539)
T ss_pred hcCCHHHHHHHHHHH-HhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCc-eEEE
Confidence 355555555555544 6777889988653 456677788899999976 5543
No 123
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=27.10 E-value=45 Score=23.63 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=27.0
Q ss_pred ccccchhhhhhhcCcceeecCCcceeeeecC
Q 024216 17 ISYKPQVFTSLLNKKLFYSRPKHTHTTLKTS 47 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (270)
.+.-+.||..|..++++..+.+|..+.|++.
T Consensus 53 ~~~v~~hL~~L~~~glv~~~~~~~~~~~~l~ 83 (110)
T COG0640 53 QSTVSHHLKVLREAGLVELRREGRLRLYRLA 83 (110)
T ss_pred hhHHHHHHHHHHHCCCeEEEecccEEEEecC
Confidence 3455899999999999999999998888855
No 124
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=27.09 E-value=2.4e+02 Score=26.29 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=41.3
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcc---hhHHhhhhHHHHHHhhc
Q 024216 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGD---AILKASAASEAIEKVYQ 227 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~---~~~~~~~~~~~~~~~~~ 227 (270)
|++..-+|. .+.++..|...|+.++.++|.+.-.+.+-+...-... .| ...|+.++.+.+.+.+.
T Consensus 2 VLIvGaGGL--Gs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~-~D~~iGk~Ka~aaa~~L~~iNP 69 (307)
T cd01486 2 CLLLGAGTL--GCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTF-EDCKGGKPKAEAAAERLKEIFP 69 (307)
T ss_pred EEEECCCHH--HHHHHHHHHHcCCCeEEEECCCEeccccCCccccccc-chhhcCccHHHHHHHHHHHHCC
Confidence 444444333 5667788999999999999999887776554321111 11 22455667777777654
No 125
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=27.04 E-value=3.6e+02 Score=22.28 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.0
Q ss_pred CCCCcEEEecCCCh-hHHHH
Q 024216 155 ENKDGLVVYDGKGI-FSAAR 173 (270)
Q Consensus 155 ~~d~~VVvYc~~g~-~~A~r 173 (270)
..+.+|+|+|..|. +++.-
T Consensus 96 ~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 46889999999876 44443
No 126
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=26.65 E-value=2.1e+02 Score=25.23 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHhCCCCcccCCCcchhHHhhhhHHHHHHhh
Q 024216 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVY 226 (270)
Q Consensus 157 d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~ 226 (270)
+.+|++.+-+|. .+.++..|...|+.++.++|...-...+-+..+-.....-...|+.++.+.+.+..
T Consensus 24 ~~~VlvvG~Ggl--Gs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 24 ASRVLIVGLGGL--GCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred CCcEEEECcCHH--HHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 456777665554 55677888899999999999987766655543321110001134445555555543
No 127
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.31 E-value=1.6e+02 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=21.9
Q ss_pred CcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEe
Q 024216 158 DGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 158 ~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vL 189 (270)
..|+|.|+.|+ ..+--++..|...|++ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999998654 3344566778889997 6644
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=26.00 E-value=1.5e+02 Score=27.00 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCccccCCCCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCChhhhhhCC-CCCceecCcccccccCCCCCCCCCC
Q 024216 63 RADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAH-IPGALFFDVDGVADRTTNLPHMLPS 141 (270)
Q Consensus 63 ~~~~~~~~~~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gH-IPGAv~ip~~~l~~~~~~~~~~lp~ 141 (270)
..+......+......+.+++.+++.+-+.+++|+ .-.-+..+| |||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----------DGtl~~~~~~~~ga~-------------------- 50 (311)
T PLN02645 1 SSNVTPAAMAAAAQLLTLENADELIDSVETFIFDC----------DGVIWKGDKLIEGVP-------------------- 50 (311)
T ss_pred CccccccccccccccCCHHHHHHHHHhCCEEEEeC----------cCCeEeCCccCcCHH--------------------
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
+.+..+ -.++.++++..+.+..........|+.+|++
T Consensus 51 -----e~l~~l-r~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 51 -----ETLDML-RSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred -----HHHHHH-HHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
No 129
>PRK13382 acyl-CoA synthetase; Provisional
Probab=25.60 E-value=1.6e+02 Score=28.55 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~ 194 (270)
...++..|.++|+.+++.|.++|..+.. ...+++.+...|.. +..++-++.
T Consensus 78 ~~~~A~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~-~vpl~~~~~ 128 (537)
T PRK13382 78 SDALAAALQALPIGEPRVVGIMCRNHRG-FVEALLAANRIGAD-ILLLNTSFA 128 (537)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecCcHH-HHHHHHHHHHcCcE-EEecCcccC
Confidence 3567888989999999999999987664 45566777788885 445555543
No 130
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=25.42 E-value=1.3e+02 Score=30.32 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH-cCCCcEEEec-ccHHHHHh
Q 024216 170 SAARVWWMFRV-FGHDRVWVLD-GGLPRWRA 198 (270)
Q Consensus 170 ~A~ra~~~L~~-~G~~~V~vLd-GG~~~W~~ 198 (270)
.++.++|+|+. .|+- |+++| ||..+|+-
T Consensus 164 ~~~~vaw~l~~tk~~g-iK~vnpgG~~a~~~ 193 (556)
T TIGR03121 164 AAAYVAWLLKATKGYG-IKVVNPGGVEAWGW 193 (556)
T ss_pred HHHHHHHHHHhccceE-EEEECCCchhhhcc
Confidence 36777899986 6776 88776 89999975
No 131
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.41 E-value=2.8e+02 Score=21.59 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHHHHc-CCCCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEe
Q 024216 143 EAFAAAVSAL-GLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 143 ~~f~~~l~~~-Gi~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vL 189 (270)
+++.+.+.+. +-+++..|++.++... ..-..+...++..|++++.+.
T Consensus 78 ~~L~~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 78 DELLAEIAAALAANPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 3444445443 2356677888887643 345667788999999998764
No 132
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=25.23 E-value=1.1e+02 Score=22.18 Aligned_cols=32 Identities=34% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCcEEEecCCCh-hHHHHHHHHHHHcCCCcEEE
Q 024216 157 KDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWV 188 (270)
Q Consensus 157 d~~VVvYc~~g~-~~A~ra~~~L~~~G~~~V~v 188 (270)
+-+|.|+-.++. ..|.++...|+..||..+.+
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~ 35 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEV 35 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeec
Confidence 456777766553 56999999999999985443
No 133
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=25.18 E-value=2.6e+02 Score=20.72 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
+.+.+.+.+. .+.+.+++|||..-. .+..++..|+..+.. +..+.|++
T Consensus 15 ~~i~~~i~~~-~~~~~~~lvf~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~ 62 (131)
T cd00079 15 EALLELLKEH-LKKGGKVLIFCPSKK-MLDELAELLRKPGIK-VAALHGDG 62 (131)
T ss_pred HHHHHHHHhc-ccCCCcEEEEeCcHH-HHHHHHHHHHhcCCc-EEEEECCC
Confidence 3455555553 345778899998644 356666777776664 88888885
No 134
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=25.13 E-value=1.3e+02 Score=30.31 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHH
Q 024216 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (270)
Q Consensus 137 ~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~ 194 (270)
.|+...+++.+++.-+--..+.++|||-+.-- .+-.++..|..+||+ ++.|-||-.
T Consensus 497 ~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred EEecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccce-EEEeeCCcc
Confidence 35666666665554432235778888876532 255677899999996 999999953
No 135
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=24.94 E-value=78 Score=29.32 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=22.0
Q ss_pred ccccCHHHHHHHhhCCCcEEEccCCC
Q 024216 243 HLIWTLEQVKRNIEEGTYQLVDARSK 268 (270)
Q Consensus 243 ~~~i~~~~v~~~~~~~~~~lIDaR~~ 268 (270)
...++.+++.+.+.++++++||+|..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~ 137 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRND 137 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcc
Confidence 33477899999999999999999974
No 136
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=24.69 E-value=2.5e+02 Score=23.42 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCC-CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi~-~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
+...+.+++.|++ ++.++++.+..|.. +..+...|...|+ +|.+++-..
T Consensus 13 ~~~~~~l~~~~~~l~~~~vlVlGgtG~i-G~~~a~~l~~~g~-~V~l~~R~~ 62 (194)
T cd01078 13 AAAGKALELMGKDLKGKTAVVLGGTGPV-GQRAAVLLAREGA-RVVLVGRDL 62 (194)
T ss_pred HHHHHHHHHhCcCCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEcCCH
Confidence 3445566666665 56778888765553 4455667777886 588776443
No 137
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=24.13 E-value=1.1e+02 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=18.8
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHH
Q 024216 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W 196 (270)
|++.|.+..-.|.-+-.+|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 3455654432244444455554433466666666554
No 138
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.07 E-value=48 Score=26.17 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=24.9
Q ss_pred EEEecCCChhHHHHHHHHHHHc----CCCcEEEecccHHHH
Q 024216 160 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRW 196 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~----G~~~V~vLdGG~~~W 196 (270)
|++.|.++.-.|.-+-.+|+.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 5677876543355555666666 566789999988766
No 139
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=24.06 E-value=2.4e+02 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEecCCC--h-hHHHHHHHHHHHcCCCcEEEecccH
Q 024216 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKG--I-FSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 138 ~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g--~-~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.+.+++++.+...+ .+-.||+.|... + .....+...|+..|.+++.++-||.
T Consensus 618 ~~~s~e~~v~aa~~----~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 618 LFQTPEEAARQAVE----NDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred CCCCHHHHHHHHHH----cCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 45678888777755 456688888642 2 3467788899999988899888875
No 140
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.93 E-value=1.5e+02 Score=20.34 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.7
Q ss_pred cEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 159 ~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
.|++|...++....++...|+..|.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 47899888887788888889999986
No 141
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=1.6e+02 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHH
Q 024216 144 AFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (270)
Q Consensus 144 ~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~ 194 (270)
.+..+..-+.......+||+|++-. .+.++.+.|+..|++ +..|.|++.
T Consensus 260 k~~~L~~ll~~~~~~~~IVF~~tk~-~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 260 KLELLLKLLKDEDEGRVIVFVRTKR-LVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcHH-HHHHHHHHHHHCCCe-EEEecCCCC
Confidence 4444443333333445899999755 488899999999997 999999964
No 142
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.58 E-value=1.1e+02 Score=23.56 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCCh-hHHHH-HHHHHHHcCCC
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGI-FSAAR-VWWMFRVFGHD 184 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~-~~A~r-a~~~L~~~G~~ 184 (270)
.+.+.+++.+. +.++..|.|+|..|. ++++- +++++...|.+
T Consensus 59 ~~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 59 LDQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 44555666654 456788999999876 44443 34566666764
No 143
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=2.1e+02 Score=27.19 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 137 ~~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
...|+.+.|+.++ +.+|+|.+.+|- .+.+..-|...||.++.++|----+-.+
T Consensus 27 ~f~~~~e~l~~l~-------~~kiLviGAGGL--GCElLKnLal~gF~~~~viDmDTId~sN 79 (422)
T KOG2015|consen 27 AFEPSEENLEFLQ-------DCKILVIGAGGL--GCELLKNLALSGFRQLHVIDMDTIDLSN 79 (422)
T ss_pred CCCCCHHHHHHHh-------hCcEEEEccCcc--cHHHHHhHHhhccceeEEEeecceeccc
Confidence 4456777777655 356877777664 5778888999999999999865444333
No 144
>PRK13391 acyl-CoA synthetase; Provisional
Probab=23.18 E-value=1.9e+02 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
...+...|.+.|+.+++.|.+|+..+.. ...++|.+...|.. +..|+-++
T Consensus 34 ~~~la~~L~~~g~~~~~~V~v~~~~~~~-~~~~~~a~~~~G~~-~~~l~~~~ 83 (511)
T PRK13391 34 SNRLAHLFRSLGLKRGDHVAIFMENNLR-YLEVCWAAERSGLY-YTCVNSHL 83 (511)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhccE-Eecccccc
Confidence 4567788899999999999999987764 44556777777875 44555554
No 145
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=23.08 E-value=1.3e+02 Score=23.98 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEec
Q 024216 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 138 ~lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
.-|.++-|...+.++|++.+..++| +++ .. -....+..|.+.|.+-+
T Consensus 100 ~KP~~~~~~~~~~~~~~~~~e~i~I-GDs-~~----Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 100 RKPKPGLILEALKRLGVDASRSLVV-GDR-LR----DLQAARNAGLAAVLLVD 146 (147)
T ss_pred CCCCHHHHHHHHHHcCCChHHEEEE-cCC-HH----HHHHHHHCCCCEEEecC
Confidence 3688999999999999877663333 333 21 12334678998665543
No 146
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=23.03 E-value=2.9e+02 Score=24.94 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred cEEEecCC---C-hhHHHHHHHHHHHcCCC-cEEEecc
Q 024216 159 GLVVYDGK---G-IFSAARVWWMFRVFGHD-RVWVLDG 191 (270)
Q Consensus 159 ~VVvYc~~---g-~~~A~ra~~~L~~~G~~-~V~vLdG 191 (270)
++||+|+- | ...|-.+...|+.-|++ .|++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 57888863 2 23466667788999987 6777775
No 147
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.73 E-value=2e+02 Score=27.30 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
...+...|.+.|+.+++.|.+|+..+.. ...+++.+...|.. +..++.++
T Consensus 21 v~~~a~~L~~~g~~~~~~V~i~~~~~~~-~~~~~la~~~~G~~-~~~l~~~~ 70 (502)
T PRK08276 21 SNRLAHGLRALGLREGDVVAILLENNPE-FFEVYWAARRSGLY-YTPINWHL 70 (502)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHhcCcE-EEeccccc
Confidence 3567788999999999999999987764 44556666777874 44444443
No 148
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=22.66 E-value=1.6e+02 Score=29.63 Aligned_cols=28 Identities=32% Similarity=0.569 Sum_probs=21.7
Q ss_pred HHHHHHHHHHH-cCCCcEEEec-ccHHHHHh
Q 024216 170 SAARVWWMFRV-FGHDRVWVLD-GGLPRWRA 198 (270)
Q Consensus 170 ~A~ra~~~L~~-~G~~~V~vLd-GG~~~W~~ 198 (270)
.++.++|+|+. .|+- |+++| ||..+|.-
T Consensus 160 ~~~~vaw~l~~tk~~g-iK~vnpgG~~a~~~ 189 (541)
T cd01304 160 LAAYVAWTLKASKGYG-IKVVNPGGTEAWGW 189 (541)
T ss_pred HHHHHHHHHHhccceE-EEEECCCchhhhcc
Confidence 36777899986 6775 88776 89999965
No 149
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.56 E-value=3.6e+02 Score=21.60 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHHHHHHHHHc-CCCCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEec
Q 024216 142 EEAFAAAVSAL-GLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 142 ~~~f~~~l~~~-Gi~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vLd 190 (270)
.+++.+.+.+. .-+++..|++..+... ..-..+...++..|+.+|.+..
T Consensus 83 ~~~L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 83 DETMITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 45565555543 2346778999987643 4456677889999999998765
No 150
>PRK07514 malonyl-CoA synthase; Validated
Probab=22.27 E-value=2.2e+02 Score=27.04 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
...++..|.++|+.+++.|++++..+.. ...+++.+...|.. +..++.++
T Consensus 38 ~~~la~~L~~~g~~~gd~v~i~~~~~~e-~~v~~la~~~~G~~-~v~l~~~~ 87 (504)
T PRK07514 38 SARLANLLVALGVKPGDRVAVQVEKSPE-ALALYLATLRAGAV-FLPLNTAY 87 (504)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcE-EEECCCCC
Confidence 4567788999999999999999987764 55566777777875 44455444
No 151
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=22.25 E-value=20 Score=26.76 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHHHh
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W~~ 198 (270)
.+++.+.+++. .+.++|-+|+.+.. +..-+.-++.+|-.+-.++-|-+..|+.
T Consensus 3 a~eII~~I~~s--kKkTPVKvYv~G~l--~~~~~~~~~~fg~~~~~vvfGd~~~i~~ 55 (83)
T PF08503_consen 3 AEEIIRYIKNS--KKKTPVKVYVKGDL--AGIDFEDVKVFGSGNFGVVFGDWDEIKP 55 (83)
T ss_dssp HHHHHHHHHHC--TTB-EEEEEEEESC--TC---TTSEEEEESSEEEEEEEHHHHHH
T ss_pred HHHHHHHHHhC--CCCCCEEEEEeeee--cCCChhheEEEeCCCcEEEEecHHHHHH
Confidence 46777888874 78899999998652 2222245677888888899998887763
No 152
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.24 E-value=5.6e+02 Score=23.78 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCcccHHHHHHhhCC---CCcEEEEeccCCCCCCCCChhhhhhCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 024216 75 EPVVSVDWLHANLRE---PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (270)
Q Consensus 75 ~~lIs~~eL~~~l~~---~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAv~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (270)
.-.|+..-+.+++.. +.++.+|.- .. .|.|-.++|.+++.. ...|.+++.+
T Consensus 110 ge~isak~~a~lL~~~g~d~vitvD~H-----------~~----~i~~~F~~p~~nl~~-----------~p~~~~~l~~ 163 (323)
T PRK02458 110 REPITAKLVANMLVKAGVDRVLTLDLH-----------AV----QVQGFFDIPVDNLFT-----------VPLFAKHYCK 163 (323)
T ss_pred CCCchHHHHHHHHhhcCCCeEEEEecC-----------cH----HhhccccCCceEEEE-----------HHHHHHHHHH
Confidence 347888888888864 347888874 11 244555566665432 2357777877
Q ss_pred cCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEec
Q 024216 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 152 ~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
.|++.+..+|+.-+.|. ..++-.+.+.+|.+ +.+++
T Consensus 164 ~~~~~~~~vvV~pd~Ga--~~~A~~la~~L~~~-~~~~~ 199 (323)
T PRK02458 164 KGLSGSDVVVVSPKNSG--IKRARSLAEYLDAP-IAIID 199 (323)
T ss_pred hCCCCCceEEEEECCCh--HHHHHHHHHHhCCC-EEEEE
Confidence 67765666666655554 33444455566765 54444
No 153
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=22.23 E-value=2.2e+02 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecc
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdG 191 (270)
...+...|.++|+.+++.|++++..... ..-+.+.+...|.. +..++-
T Consensus 31 v~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~~A~~~~G~~-~v~l~~ 78 (417)
T PF00501_consen 31 VRKLAAALRKLGVKKGDRVAILLPNSIE-FVVAFLACLRAGAI-PVPLDP 78 (417)
T ss_dssp HHHHHHHHHHTTSSTTSEEEEEESSSHH-HHHHHHHHHHTT-E-EEEEET
T ss_pred HHHHhhHHHHhCCCccccccccCCccce-eeeeeccccccccc-cccccc
Confidence 3567888899999999999999987654 45555666677875 444443
No 154
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=22.16 E-value=2.2e+02 Score=26.33 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~ 194 (270)
...+...|.+.|+.+++.|.+++..+.. ...+++.+...|.. +..++.+++
T Consensus 9 ~~~~a~~l~~~g~~~gd~v~i~~~~~~~-~~~~~la~~~~G~~-~~~~~~~~~ 59 (436)
T TIGR01923 9 AAHLAKALKAQGIRSGSRVALVGQNSIE-MVLLLHACLLLGAE-IAMLNTRLT 59 (436)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCcE-EEecCcCCC
Confidence 3567788999999999999888877653 45556667777885 556666554
No 155
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=21.99 E-value=2.3e+02 Score=25.34 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEec
Q 024216 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 139 lp~~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLd 190 (270)
-|+.+.|+..+..+||+.-...++++++... ...-+..|.+-|.++-
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~N-----I~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSERN-----IQTAKEVGLKTVLVGR 206 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCchhh-----HHHHHhccceeEEEEe
Confidence 4788999999999999966677888876431 1223457887565443
No 156
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=21.83 E-value=2.2e+02 Score=26.81 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccHHHH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~~~W 196 (270)
...+.+.|.+.|+.+++.|.+++..+.. ...+++.+...|.. +..++..++.+
T Consensus 38 ~~~~a~~L~~~g~~~~~~v~l~~~~~~~-~~~~~la~~~~G~~-~v~~~~~~~~~ 90 (458)
T PRK09029 38 IDQLAAGFAQQGVVEGSGVALRGKNSPE-TLLAYLALLQCGAR-VLPLNPQLPQP 90 (458)
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCCHH-HHHHHHHHHHcCCE-EeecCCCCCHH
Confidence 4567778888999999999999887764 45556777778875 55566655443
No 157
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=21.78 E-value=2.5e+02 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=21.4
Q ss_pred CCCCcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEec
Q 024216 155 ENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVLD 190 (270)
Q Consensus 155 ~~d~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vLd 190 (270)
.+..+|+|+|+.|+ ..+--++..|..+|++ |+++.
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~~ 79 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLLK 79 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEEc
Confidence 34577999998543 2233444566557775 77663
No 158
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=21.67 E-value=1.4e+02 Score=26.62 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=21.5
Q ss_pred CcEEEecCCCh--hHHHHHHHHHHHcCCCcEEEe
Q 024216 158 DGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (270)
Q Consensus 158 ~~VVvYc~~g~--~~A~ra~~~L~~~G~~~V~vL 189 (270)
.+|+|.|+.|+ ..+--++..|...|++ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 67999998543 2344556778888996 7655
No 159
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=21.32 E-value=1.6e+02 Score=28.63 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHH-HHHHHc----CCCcEEEecccHHHHHh
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVW-WMFRVF----GHDRVWVLDGGLPRWRA 198 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~-~~L~~~----G~~~V~vLdGG~~~W~~ 198 (270)
..++.+.|.++ .+.+...|+||.+|.- |..++ .+.+.+ |-..+-.+.|+|.+|..
T Consensus 119 ~~~lAe~L~~~-~p~~~~~v~f~~SGsE-A~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 178 (442)
T TIGR03372 119 RALLAKTLAAL-TPGKLKYSFFCNSGTE-SVEAALKLAKAYQSPRGKFTFIAASGAFHGKSL 178 (442)
T ss_pred HHHHHHHHHHh-CCCCcCEEEEeCCchH-HHHHHHHHHHHHHhhcCCcEEEEECCCccCCCH
Confidence 45667777664 2233357888887764 43333 333443 66668889999988754
No 160
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=21.32 E-value=2.3e+02 Score=25.67 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCC-CCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 143 ~~f~~~l~~~Gi-~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
.-|...|.+.+. ...++|++...+|. +..+.+.|...|.+++.++|--.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGa--araia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGA--GAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEECCCH
Confidence 445555654322 23466777665543 55567888899999899998654
No 161
>PRK13390 acyl-CoA synthetase; Provisional
Probab=21.22 E-value=2.1e+02 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCC
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
...++..|.+.|+.+++.|.+++..+.. ...+++.+...|..
T Consensus 34 ~~~la~~L~~~gv~~gd~V~i~~~n~~~-~~~~~la~~~~Ga~ 75 (501)
T PRK13390 34 SAALARVLYDAGLRTGDVVALLSDNSPE-ALVVLWAALRSGLY 75 (501)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCE
Confidence 4577888999999999999999887764 44455666667764
No 162
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=21.15 E-value=93 Score=24.39 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=14.2
Q ss_pred CcEEEecCCChhHHHHHHHHHHHcCCCcEEE
Q 024216 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWV 188 (270)
Q Consensus 158 ~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~v 188 (270)
+.-||+|++|.. .+||.+|||
T Consensus 77 d~RVV~CdGg~~----------aLGHPkvyI 97 (120)
T KOG3456|consen 77 DGRVVACDGGTP----------ALGHPKVYI 97 (120)
T ss_pred cceEEEecCCCC----------CCCCCeEEE
Confidence 345666776653 279999984
No 163
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=21.09 E-value=3.7e+02 Score=22.51 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCCcEEEecC---CChhHHHHHHHHHHHcCCCcEE---Eec---ccHHHHHhCCCCcccC
Q 024216 154 LENKDGLVVYDG---KGIFSAARVWWMFRVFGHDRVW---VLD---GGLPRWRASGYDVESS 206 (270)
Q Consensus 154 i~~d~~VVvYc~---~g~~~A~ra~~~L~~~G~~~V~---vLd---GG~~~W~~~G~pv~~~ 206 (270)
+.++++|++.++ +|. +...+...|+..|.+-+. ++| ||-..-.+.|+|+.+-
T Consensus 104 ~~~g~~VlIVDDvitTG~-Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL 164 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQ-SAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEAL 164 (176)
T ss_pred CCCcCEEEEEEEeeCCCH-HHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEE
Confidence 457889999987 343 577788999999986322 333 2222224456666553
No 164
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=20.72 E-value=2.4e+02 Score=26.91 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
...+...|.+.|+.+++.|.++|..+.. ...++|.+-..|.. +..++-++
T Consensus 40 ~~~~a~~L~~~g~~~g~~v~l~~~~~~~-~~~~~~a~~~~G~~-~v~l~~~~ 89 (508)
T TIGR02262 40 VRRLGAALRRLGVKREERVLLLMLDGVD-FPIAFLGAIRAGIV-PVALNTLL 89 (508)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcE-EeeccCCC
Confidence 3567778889999999999999987764 44556677777875 44445443
No 165
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=20.69 E-value=93 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.4
Q ss_pred ccccCHHHHHHHhh-CCCcEEEccCCCC
Q 024216 243 HLIWTLEQVKRNIE-EGTYQLVDARSKA 269 (270)
Q Consensus 243 ~~~i~~~~v~~~~~-~~~~~lIDaR~~~ 269 (270)
+-.||+++|++.+. ..+++++|+.+-+
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTge 44 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGD 44 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCc
Confidence 34599999999875 5689999998743
No 166
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.57 E-value=2.1e+02 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.6
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCC
Q 024216 160 LVVYDGKGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 160 VVvYc~~g~~~A~ra~~~L~~~G~~ 184 (270)
|++|...++..+.++..+|+..|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~ 26 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVD 26 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCc
Confidence 7888887777788888889988886
No 167
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=20.43 E-value=2.1e+02 Score=28.53 Aligned_cols=50 Identities=26% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEecccH
Q 024216 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG~ 193 (270)
...++..|.++|+.+++.|.+|+..... ..-+++.....|.- ...++.++
T Consensus 93 v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e-~v~~~lA~~~~Gav-~vpl~~~~ 142 (628)
T TIGR02316 93 VNVFASALRALGVGRGDRVLIYMPMIAE-AVFAMLACARIGAI-HSVVFGGF 142 (628)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCE-EEecCCCC
Confidence 3578889999999999999999987653 44445556667764 33555554
No 168
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.18 E-value=1.9e+02 Score=21.53 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCCcEEEecC-----CChhHHHHHHHHHHHcCCC
Q 024216 156 NKDGLVVYDG-----KGIFSAARVWWMFRVFGHD 184 (270)
Q Consensus 156 ~d~~VVvYc~-----~g~~~A~ra~~~L~~~G~~ 184 (270)
...+||+|.. ..+.++.++-.+|+.+|.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 4568999965 3456688999999999986
No 169
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=20.07 E-value=2.9e+02 Score=25.00 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCC-CCCcEEEecCCChhHHHHHHHHHHHcCCCcEEEeccc
Q 024216 142 EEAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (270)
Q Consensus 142 ~~~f~~~l~~~Gi~-~d~~VVvYc~~g~~~A~ra~~~L~~~G~~~V~vLdGG 192 (270)
-.-|...|.+.+.. +++.++|...+|. +..+++.|...|+++|.+++-.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAGGa--grAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAGGA--ATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCC
Confidence 34566667665554 3556666665432 4445667888999989988754
Done!