Query 024217
Match_columns 270
No_of_seqs 222 out of 1520
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 1.9E-39 4E-44 281.8 15.5 185 69-269 9-198 (379)
2 PLN03145 Protein phosphatase 2 100.0 1.9E-37 4E-42 287.6 22.7 177 78-269 61-239 (365)
3 KOG0698 Serine/threonine prote 100.0 7.3E-36 1.6E-40 274.5 20.6 176 82-269 40-219 (330)
4 PF00481 PP2C: Protein phospha 100.0 3.7E-35 8.1E-40 260.3 16.2 170 83-269 1-174 (254)
5 PTZ00224 protein phosphatase 2 100.0 1.3E-33 2.8E-38 262.9 19.5 161 77-269 17-178 (381)
6 KOG0699 Serine/threonine prote 100.0 8.5E-34 1.8E-38 254.2 13.7 79 189-269 326-404 (542)
7 COG0631 PTC1 Serine/threonine 100.0 2.5E-30 5.5E-35 230.7 13.4 169 80-269 6-178 (262)
8 KOG0700 Protein phosphatase 2C 100.0 7E-29 1.5E-33 226.5 14.2 147 123-270 96-287 (390)
9 cd00143 PP2Cc Serine/threonine 99.9 7.6E-26 1.6E-30 198.2 20.6 169 83-270 2-173 (254)
10 smart00332 PP2Cc Serine/threon 99.9 2.8E-25 6.1E-30 195.3 21.6 168 81-269 5-175 (255)
11 PRK14559 putative protein seri 99.9 2.3E-25 5E-30 218.7 17.2 174 81-270 374-555 (645)
12 KOG1323 Serine/threonine phosp 99.8 9E-19 1.9E-23 156.4 12.8 125 121-247 139-298 (493)
13 PF13672 PP2C_2: Protein phosp 99.6 7.7E-15 1.7E-19 126.1 13.7 129 87-233 3-138 (212)
14 KOG0618 Serine/threonine phosp 99.4 6.7E-13 1.5E-17 132.2 8.1 164 81-270 521-693 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.2 8.4E-10 1.8E-14 93.3 14.5 98 124-233 28-128 (193)
16 KOG1379 Serine/threonine prote 99.1 8.9E-10 1.9E-14 98.7 11.8 113 94-232 89-208 (330)
17 TIGR02865 spore_II_E stage II 98.1 8.9E-05 1.9E-09 75.7 14.9 125 81-234 551-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.6 0.0016 3.5E-08 54.5 12.8 100 124-234 2-105 (193)
19 PRK10693 response regulator of 76.3 40 0.00087 30.4 11.0 50 173-225 208-259 (303)
20 COG0796 MurI Glutamate racemas 25.2 45 0.00097 30.1 1.7 25 126-150 5-30 (269)
21 PF09932 DUF2164: Uncharacteri 22.2 2E+02 0.0043 20.7 4.3 47 138-184 25-71 (76)
22 PF05785 CNF1: Rho-activating 20.9 1.2E+02 0.0025 27.5 3.5 26 189-215 128-153 (281)
23 COG3342 Uncharacterized conser 20.3 2.2E+02 0.0048 25.4 5.0 108 124-246 78-202 (265)
24 PF01383 CpcD: CpcD/allophycoc 20.0 97 0.0021 20.8 2.2 16 237-252 37-52 (56)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-39 Score=281.84 Aligned_cols=185 Identities=35% Similarity=0.465 Sum_probs=160.6
Q ss_pred cccccccCCcccceeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q 024217 69 VLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERM 148 (270)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l 148 (270)
..+|....+..+.+.||..|++|||-+|||++.+...+..+. .+|+||||||||.|+.+|.+|+++|
T Consensus 9 kteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l-------------~dWSfFAVfDGHAGs~va~~c~~hL 75 (379)
T KOG0697|consen 9 KTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPL-------------EDWSFFAVFDGHAGSQVANHCAEHL 75 (379)
T ss_pred ccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCc-------------cCceEEEEEcCccchHHHHHHHHHH
Confidence 344555667788999999999999999999998876654432 6999999999999999999999999
Q ss_pred HHHHHHHHhcc--cCCCchHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCC
Q 024217 149 HEVLVEVIAGE--EYGEKNIEWERVMEGCFGKMDEEVNRG---RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGG 223 (270)
Q Consensus 149 ~~~l~~~~~~~--~~~~~~~~~~~~l~~af~~~d~~l~~~---~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g 223 (270)
.+.|...-.+. ..+...++++.-|+..|.++|+..... ......+||||+.+++.+.++|++||||||+++|++|
T Consensus 76 lehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng 155 (379)
T KOG0697|consen 76 LEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG 155 (379)
T ss_pred HHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC
Confidence 99887543322 222356789999999999999987766 3344569999999999999999999999999999999
Q ss_pred eeEEcCCCCCCCChhHHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 224 VVVPLSVDHKPDRHDELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 224 ~~~~LT~DH~p~~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
+++.-|.||+|.+|+|++||+.|||.|+- -||||.||||||||
T Consensus 156 ~~~f~TqDHKP~~p~EkeRIqnAGGSVMI---qRvNGsLAVSRAlG 198 (379)
T KOG0697|consen 156 EVVFSTQDHKPYLPKEKERIQNAGGSVMI---QRVNGSLAVSRALG 198 (379)
T ss_pred ceEEeccCCCCCChHHHHHHhcCCCeEEE---EEecceeeeehhcc
Confidence 99999999999999999999999999987 89999999999998
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.9e-37 Score=287.57 Aligned_cols=177 Identities=33% Similarity=0.455 Sum_probs=148.3
Q ss_pred cccceeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024217 78 TVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIA 157 (270)
Q Consensus 78 ~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~ 157 (270)
+...+.+|..|++|.|++|||++++..++.... +..........||||||||||+.+|+||+++|++.|.+...
T Consensus 61 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~------~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~ 134 (365)
T PLN03145 61 FIPVVRSGAWADIGSRSSMEDVYICVDNFMSDF------GLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED 134 (365)
T ss_pred ccCceEEEEEccccCCCCCCCceEecccccccc------cccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 444588999999999999999998876553210 00011123578999999999999999999999998876432
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCC
Q 024217 158 GEEYGEKNIEWERVMEGCFGKMDEEVNRG--RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPD 235 (270)
Q Consensus 158 ~~~~~~~~~~~~~~l~~af~~~d~~l~~~--~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~ 235 (270)
. ...+.++|.++|..+|..+... ......+|||+++++|.++++|||||||||||++++|++++||.||+|.
T Consensus 135 ~------~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~ 208 (365)
T PLN03145 135 F------PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPM 208 (365)
T ss_pred c------chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCC
Confidence 1 3467888999999999998765 1233459999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 236 RHDELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 236 ~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
++.|++||+++||.|.. +|++|.|++|||||
T Consensus 209 ~~~E~~RI~~~Gg~v~~---g~v~g~l~vTRalG 239 (365)
T PLN03145 209 CSKERKRIEASGGYVYD---GYLNGQLNVARALG 239 (365)
T ss_pred CHHHHHHHHHcCCceec---ceECCccccccccc
Confidence 99999999999999975 79999999999999
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-36 Score=274.51 Aligned_cols=176 Identities=46% Similarity=0.639 Sum_probs=149.5
Q ss_pred eeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccC
Q 024217 82 LSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEY 161 (270)
Q Consensus 82 ~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~ 161 (270)
...+.++.+|+|..|||++.....+...... ......||||||||||+.+|+||.++|+..|.+.+.....
T Consensus 40 ~~~~~~~~~~~r~~med~~~~~~~~~~~~~~---------~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~ 110 (330)
T KOG0698|consen 40 RLGSLLSIRGRRRKMEDRHVQLPDFLEEDVG---------GEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKD 110 (330)
T ss_pred cceEEEecCCCCCccCcceeecccccccccC---------CCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccc
Confidence 3445568899999999999998876532100 1126899999999999999999999999999988875321
Q ss_pred CCchHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCceeEEEEEeCC-EEEEEEeccceEEEEeCC-eeEEcCCCCCCCChh
Q 024217 162 GEKNIEWERVMEGCFG-KMDEEVNRGRLREEMVGSTAVVAVVGKE-ELVVANCGDSRAVLSRGG-VVVPLSVDHKPDRHD 238 (270)
Q Consensus 162 ~~~~~~~~~~l~~af~-~~d~~l~~~~~~~~~~GsTa~v~~i~~~-~l~vanvGDSRa~l~r~g-~~~~LT~DH~p~~~~ 238 (270)
...+..+++++|. .+|..+.........+|||++++++.++ +|||||+|||||||++.| ++++||.||+|++++
T Consensus 111 ---~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~ 187 (330)
T KOG0698|consen 111 ---RQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDRED 187 (330)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHH
Confidence 2468999999999 6999998642334789999999999865 999999999999999765 899999999999999
Q ss_pred HHHHHHHcCCEEEecCC-CcccCcccccccCC
Q 024217 239 ELIRVEAAGGRVINWNG-PRILGVLATSRSIG 269 (270)
Q Consensus 239 E~~RI~~aGg~v~~~~~-~Rv~G~L~vSRa~G 269 (270)
|+.||+++||+|..|.+ +||+|.|+||||||
T Consensus 188 E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~G 219 (330)
T KOG0698|consen 188 ERERIEAAGGRVSNWGGVWRVNGVLAVSRAFG 219 (330)
T ss_pred HHHHHHHcCCEEEEcCCcceEeceEEEeeecC
Confidence 99999999999998776 89999999999998
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.7e-35 Score=260.29 Aligned_cols=170 Identities=39% Similarity=0.569 Sum_probs=143.6
Q ss_pred eeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccCC
Q 024217 83 SHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYG 162 (270)
Q Consensus 83 ~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~~ 162 (270)
.||+.+.+|+|++|||++++..++.... ......+|+|||||||..+++|++++|+..|.+.+....
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~-----------~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~-- 67 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNS-----------GNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFND-- 67 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCT-----------TEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CcCeecCCCCCCcccCEEEEecCccccC-----------CCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccc--
Confidence 3789999999999999999998774311 225899999999999999999999999998888776421
Q ss_pred CchHHHHHHHHHHHHH-HHHHHHhcCC--CCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeE-EcCCCCCCCChh
Q 024217 163 EKNIEWERVMEGCFGK-MDEEVNRGRL--REEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVV-PLSVDHKPDRHD 238 (270)
Q Consensus 163 ~~~~~~~~~l~~af~~-~d~~l~~~~~--~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~-~LT~DH~p~~~~ 238 (270)
...+.++|..+|.. +++.+..... ....+|||+++++|.+++||+||||||||||++.+... +||.||+|++++
T Consensus 68 --~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~ 145 (254)
T PF00481_consen 68 --GNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPD 145 (254)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHH
T ss_pred --ccchhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhh
Confidence 22789999999999 9998876211 46789999999999999999999999999999999888 999999999999
Q ss_pred HHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 239 ELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 239 E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
|++||+++||.|.. .+|++|.|++|||||
T Consensus 146 E~~RI~~~gg~v~~--~~rv~g~l~~sRalG 174 (254)
T PF00481_consen 146 ERERIRKAGGRVSE--NGRVNGVLAVSRALG 174 (254)
T ss_dssp HHHHHHHTT-GEEE--TEEETTTBSSSB-EE
T ss_pred ccceeecccccccc--chhhhhccccccccc
Confidence 99999999999984 489999999999998
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.3e-33 Score=262.90 Aligned_cols=161 Identities=34% Similarity=0.447 Sum_probs=137.9
Q ss_pred CcccceeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHH
Q 024217 77 NTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVI 156 (270)
Q Consensus 77 ~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~ 156 (270)
.....+.+|..+++|+|++|||++++... .+..||||||||||..+|+|++++|+..|.+..
T Consensus 17 ~~~~~~~~g~~s~~G~R~~nED~~~v~~~------------------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~ 78 (381)
T PTZ00224 17 AGNSIFRCASACVNGYRESMEDAHLLYLT------------------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEP 78 (381)
T ss_pred CCCccEEEEEEeCCCCCCCCCCeeEeccC------------------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34557999999999999999999876532 255799999999999999999999998775432
Q ss_pred hcccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEEe-CCEEEEEEeccceEEEEeCCeeEEcCCCCCCC
Q 024217 157 AGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG-KEELVVANCGDSRAVLSRGGVVVPLSVDHKPD 235 (270)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~-~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~ 235 (270)
.. ...+.|..+|..+|+++... ...+|||+++++|. +.++|||||||||||++++|++++||.||+|.
T Consensus 79 ~~--------~~~~~l~~a~~~~d~~i~~~---~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~ 147 (381)
T PTZ00224 79 EP--------MTDERMEELCLEIDEEWMDS---GREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPN 147 (381)
T ss_pred cc--------ccHHHHHHHHHHHHHHHHhc---ccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCC
Confidence 11 12345889999999999865 23569999998886 57999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 236 RHDELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 236 ~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
++.|+.||.++||.+.. +|++|.+++|||||
T Consensus 148 ~~~E~~RI~~~gg~v~~---~Rv~G~l~vTRalG 178 (381)
T PTZ00224 148 NPGERQRIEACGGRVVS---NRVDGDLAVSRAFG 178 (381)
T ss_pred CHHHHhHHHHccCEecc---ccccCceeeecccC
Confidence 99999999999999975 79999999999999
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-34 Score=254.17 Aligned_cols=79 Identities=52% Similarity=0.728 Sum_probs=75.1
Q ss_pred CCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCCChhHHHHHHHcCCEEEecCCCcccCcccccccC
Q 024217 189 REEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPDRHDELIRVEAAGGRVINWNGPRILGVLATSRSI 268 (270)
Q Consensus 189 ~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~ 268 (270)
....+|||++|++|.+++|||||.||||||+++.|+++.||.||+|.++.|..||.++||.|.. .+||+|+|++||||
T Consensus 326 PG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl--DGRVNGGLNLSRA~ 403 (542)
T KOG0699|consen 326 PGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL--DGRVNGGLNLSRAF 403 (542)
T ss_pred CCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee--cceecCccchhhhh
Confidence 3467899999999999999999999999999999999999999999999999999999999973 38999999999999
Q ss_pred C
Q 024217 269 G 269 (270)
Q Consensus 269 G 269 (270)
|
T Consensus 404 G 404 (542)
T KOG0699|consen 404 G 404 (542)
T ss_pred h
Confidence 8
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-30 Score=230.71 Aligned_cols=169 Identities=27% Similarity=0.340 Sum_probs=141.7
Q ss_pred cceeeEEEeeeeC-CCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhc
Q 024217 80 TCLSHGTMSVIGR-RKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAG 158 (270)
Q Consensus 80 ~~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~ 158 (270)
..+.++..++.|. |.+|||++++..+... .. ..||+|||||||+.++++|++.+++.|.+.+..
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~--------------~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~ 70 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENG--------------NL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDE 70 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCC--------------cc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHh
Confidence 3566777777776 8899999999864321 13 789999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCC
Q 024217 159 EEYGEKNIEWERVMEGCFGKMDEEVNRG---RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPD 235 (270)
Q Consensus 159 ~~~~~~~~~~~~~l~~af~~~d~~l~~~---~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~ 235 (270)
.........+.+.|.+++..+|+.+... ......||||++++++.++++|+|||||||+|++++|.++|||.||++.
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~ 150 (262)
T COG0631 71 TNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLV 150 (262)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHH
Confidence 4332212227899999999999999877 2456889999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 236 RHDELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 236 ~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
++.|+.|+...++.+.. +|.+ ++|||||
T Consensus 151 ~~~~~~~~~~~~~~~~~---~~~~---~ltralG 178 (262)
T COG0631 151 NRLEQRGIITPEEARSH---PRRN---ALTRALG 178 (262)
T ss_pred HHHHHhcCCCHHHHHhC---ccch---hhhhhcC
Confidence 99999998887776653 5555 8999998
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=7e-29 Score=226.55 Aligned_cols=147 Identities=31% Similarity=0.491 Sum_probs=124.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccC-------CC--------------------c-hHHHHHHHHH
Q 024217 123 QKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEY-------GE--------------------K-NIEWERVMEG 174 (270)
Q Consensus 123 ~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~-------~~--------------------~-~~~~~~~l~~ 174 (270)
+.++.|+||||||||..+++|++++|..++..++..... .+ . ...+.++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 368999999999999999999999999999866543111 00 1 4678899999
Q ss_pred HHHHHHHHHHhc-------CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEe---CC---eeEEcCCCCCCCChhHHH
Q 024217 175 CFGKMDEEVNRG-------RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSR---GG---VVVPLSVDHKPDRHDELI 241 (270)
Q Consensus 175 af~~~d~~l~~~-------~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r---~g---~~~~LT~DH~p~~~~E~~ 241 (270)
||.+++++|... ......+|||+++.+|.+..|||||+|||||||+. .+ .++|||.||+.++++|++
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 999999999765 45567899999999999999999999999999975 22 689999999999999999
Q ss_pred HHHHcCC----EEEecCCCcccCcccccccCCC
Q 024217 242 RVEAAGG----RVINWNGPRILGVLATSRSIGM 270 (270)
Q Consensus 242 RI~~aGg----~v~~~~~~Rv~G~L~vSRa~G~ 270 (270)
||+..+. .|.+ ..|||+|.|.+|||||.
T Consensus 256 Rir~eHPdd~~~vv~-~~~RvkG~L~vsRAfGd 287 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVN-KHWRVKGILQVSRAFGD 287 (390)
T ss_pred HHHHhCCCCcceEee-ccceeeEEEEeeeeccc
Confidence 9999985 3332 44899999999999994
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.94 E-value=7.6e-26 Score=198.18 Aligned_cols=169 Identities=40% Similarity=0.545 Sum_probs=144.6
Q ss_pred eeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccCC
Q 024217 83 SHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYG 162 (270)
Q Consensus 83 ~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~~ 162 (270)
.++..+..|.|+.|||++++...... .+..+|+|||||||+..++++++.+.+.|.+.+.....
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~---------------~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~- 65 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN---------------EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT- 65 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC---------------CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 46778888899999999998754321 26799999999999999999999999999988764321
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCCChhH
Q 024217 163 EKNIEWERVMEGCFGKMDEEVNRGR---LREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPDRHDE 239 (270)
Q Consensus 163 ~~~~~~~~~l~~af~~~d~~l~~~~---~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~~~~E 239 (270)
.....+...|..+|..+++.+.... .....+|||++++++.++.++++|+||||+|++++++++++|.||++.++.|
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~ 145 (254)
T cd00143 66 LSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEE 145 (254)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHH
Confidence 2256788899999999999998762 2456799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEecCCCcccCcccccccCCC
Q 024217 240 LIRVEAAGGRVINWNGPRILGVLATSRSIGM 270 (270)
Q Consensus 240 ~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G~ 270 (270)
..||...+|++.. .+..+...+||+||.
T Consensus 146 ~~~i~~~~~~~~~---~~~~~~~~~t~~lG~ 173 (254)
T cd00143 146 RERIEKAGGRVSN---GRVPGVLAVTRALGD 173 (254)
T ss_pred HHHHHHcCCcEEe---CEEcCceeeccccCC
Confidence 9999999998753 566778999999984
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.94 E-value=2.8e-25 Score=195.30 Aligned_cols=168 Identities=45% Similarity=0.608 Sum_probs=143.4
Q ss_pred ceeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhccc
Q 024217 81 CLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEE 160 (270)
Q Consensus 81 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~ 160 (270)
.+.++..+..|.|..|||++++..++. .+..+|+|||||||..+|+++++.+.+.+.+......
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~----------------~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~ 68 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLS----------------DSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHK 68 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCC----------------CCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcc
Confidence 466777888899999999998875431 3688999999999999999999999998887654221
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCCCh
Q 024217 161 YGEKNIEWERVMEGCFGKMDEEVNRGRL---REEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPDRH 237 (270)
Q Consensus 161 ~~~~~~~~~~~l~~af~~~d~~l~~~~~---~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~~~ 237 (270)
.....+.+.|.++|..+++.+..... ....+|||++++++.++.+|++|+||||+|+++++++.+||.||++.++
T Consensus 69 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~ 146 (255)
T smart00332 69 --DELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNE 146 (255)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCH
Confidence 11246888999999999999987611 2357899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCEEEecCCCcccCcccccccCC
Q 024217 238 DELIRVEAAGGRVINWNGPRILGVLATSRSIG 269 (270)
Q Consensus 238 ~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G 269 (270)
.|..||...++.+.. ++..+.+.+||++|
T Consensus 147 ~~~~~i~~~~~~~~~---~~~~~~~~lt~~~g 175 (255)
T smart00332 147 DERARIEAAGGFVIN---GRVNGVLALSRAIG 175 (255)
T ss_pred HHHHHHHHcCCEEEC---CeECCeEecccccC
Confidence 999999999998875 57788899999998
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.93 E-value=2.3e-25 Score=218.66 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=124.9
Q ss_pred ceeeEEEeeeeC-CCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcc
Q 024217 81 CLSHGTMSVIGR-RKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGE 159 (270)
Q Consensus 81 ~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~ 159 (270)
.+.++..|++|. |++|||++.+...+.....+ .........+|+|||||||+.+|++||+.+.+.|.+.+...
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~------~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~ 447 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENP------HGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQH 447 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccc------cccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence 478899999997 99999998775432110000 00001245799999999999999999999999888776532
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCCceeEEEEEeCCEEEEEEeccceEEEE-eCCeeEEcCCCCC
Q 024217 160 EYGEKNIEWERVMEGCFGKMDEEVNRGR-----LREEMVGSTAVVAVVGKEELVVANCGDSRAVLS-RGGVVVPLSVDHK 233 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~af~~~d~~l~~~~-----~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~-r~g~~~~LT~DH~ 233 (270)
... .....+.|.++|..+|+.|.... .....||||+++++|.++++|++||||||+|++ ++|++++||+||+
T Consensus 448 ~~~--~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs 525 (645)
T PRK14559 448 WQD--ELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHE 525 (645)
T ss_pred hcc--cccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCC
Confidence 111 11235678999999999997641 134569999999999999999999999999988 5789999999999
Q ss_pred CCChhHHHHHHHcCCEEEecCC-CcccCcccccccCCC
Q 024217 234 PDRHDELIRVEAAGGRVINWNG-PRILGVLATSRSIGM 270 (270)
Q Consensus 234 p~~~~E~~RI~~aGg~v~~~~~-~Rv~G~L~vSRa~G~ 270 (270)
+... +.+.| +..... .|. +..++|||||+
T Consensus 526 ~~~~-----lv~~G--i~~~~a~~~p-~~~~LTrALG~ 555 (645)
T PRK14559 526 VGQR-----EIQRG--VEPQIAYARP-DAYQLTQALGP 555 (645)
T ss_pred HHHH-----HHHhC--CCHHHHhcCc-ccceeeeccCC
Confidence 8643 33334 211000 232 45789999995
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=9e-19 Score=156.40 Aligned_cols=125 Identities=30% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccC----------------------------------CCchH
Q 024217 121 DDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEY----------------------------------GEKNI 166 (270)
Q Consensus 121 ~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~----------------------------------~~~~~ 166 (270)
....+.++|-+||||.|..+|-+|++.++.++.+.+..... ...+.
T Consensus 139 a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~ 218 (493)
T KOG1323|consen 139 APRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEH 218 (493)
T ss_pred CCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHH
Confidence 34567899999999999999999999999988876541100 00123
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCCChhHHHHHHH
Q 024217 167 EWERVMEGCFGKMDEEVNRG-RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPDRHDELIRVEA 245 (270)
Q Consensus 167 ~~~~~l~~af~~~d~~l~~~-~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~~~~E~~RI~~ 245 (270)
-+..+|+.||+.||++|... .......|||+++++..-++||+||.|||||||.+++++++||++.+|. .|++||+.
T Consensus 219 LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~ 296 (493)
T KOG1323|consen 219 LVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQE 296 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHH
Confidence 45679999999999999877 4456778999999999999999999999999999999999999999998 89999988
Q ss_pred cC
Q 024217 246 AG 247 (270)
Q Consensus 246 aG 247 (270)
.+
T Consensus 297 La 298 (493)
T KOG1323|consen 297 LA 298 (493)
T ss_pred Hh
Confidence 63
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.62 E-value=7.7e-15 Score=126.12 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=82.9
Q ss_pred EeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccCCCchH
Q 024217 87 MSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNI 166 (270)
Q Consensus 87 ~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~ 166 (270)
.+++|.+..|||++.+... .+..+++|+||+||...++.+++.+++.+.+.+..........
T Consensus 3 ~sh~~~~~~nqD~~~~~~~------------------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~ 64 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD------------------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPS 64 (212)
T ss_dssp ----TTSSS--EEEEEE-T------------------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred ccccCCCCCCCCCEEeeeC------------------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchH
Confidence 4789999999999986533 3567779999999999999999999999988887544322111
Q ss_pred HHHHHHHHHHHHHHHHH------HhcCCCCCCCCceeEEEEEeCCEEEEEEeccceEEE-EeCCeeEEcCCCCC
Q 024217 167 EWERVMEGCFGKMDEEV------NRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVL-SRGGVVVPLSVDHK 233 (270)
Q Consensus 167 ~~~~~l~~af~~~d~~l------~~~~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l-~r~g~~~~LT~DH~ 233 (270)
.....+..+...+...+ ..........+||++++++.++.++++|+||||+|+ .++|++.+|+.||+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~ 138 (212)
T PF13672_consen 65 SIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHS 138 (212)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---B
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCcc
Confidence 12333333333333221 001234567899999999999999999999999965 58999999999997
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=6.7e-13 Score=132.23 Aligned_cols=164 Identities=22% Similarity=0.330 Sum_probs=138.4
Q ss_pred ceeeEEEeeeeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhccc
Q 024217 81 CLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEE 160 (270)
Q Consensus 81 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~ 160 (270)
-+.||++.+.|.|.++--+.....+|.. .....|++|||-+-.....+++..+..+|.++++...
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~---------------~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~ 585 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFL---------------NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG 585 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhccc---------------CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 3679999999999998877777777765 4788999999999999999999999999999987532
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEEeC--------CEEEEEEeccceEEEEeCCeeEEcCCCC
Q 024217 161 YGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGK--------EELVVANCGDSRAVLSRGGVVVPLSVDH 232 (270)
Q Consensus 161 ~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~~--------~~l~vanvGDSRa~l~r~g~~~~LT~DH 232 (270)
+-.+.|..+|..+++++... ....|..++.+.|.. .++.+||+|+|.++++++|+.+++|.-.
T Consensus 586 ------~et~~mr~~fl~~~rklg~~---g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~ 656 (1081)
T KOG0618|consen 586 ------NETEQMRNTFLRLNRKLGEE---GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSP 656 (1081)
T ss_pred ------ChHHHHHHHHHHHhhhhhhh---hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccc
Confidence 22334999999999999655 555666677777754 4789999999999999999999998776
Q ss_pred C-CCChhHHHHHHHcCCEEEecCCCcccCcccccccCCC
Q 024217 233 K-PDRHDELIRVEAAGGRVINWNGPRILGVLATSRSIGM 270 (270)
Q Consensus 233 ~-p~~~~E~~RI~~aGg~v~~~~~~Rv~G~L~vSRa~G~ 270 (270)
. .-+++|.+||+..+|+|. ++++++|+...||++|+
T Consensus 657 ~~~v~~eE~~RI~~~~g~i~--ed~k~ngvt~~tR~iG~ 693 (1081)
T KOG0618|consen 657 MLEVDREEYKRIVDSKGFIT--EDNKLNGVTSSTRAIGP 693 (1081)
T ss_pred cccCCHHHHHHHHHhcCeec--CCCeeeceeeeeeeccc
Confidence 4 449999999999999997 36999999999999996
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.17 E-value=8.4e-10 Score=93.34 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEE-
Q 024217 124 KKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVV- 202 (270)
Q Consensus 124 ~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i- 202 (270)
++..+|+|+||||+...|.+++..+...+.+.+... ..+...+..+|+.+... ....+|+|++++++
T Consensus 28 ~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~----------~~~~~~l~~~n~~l~~~--~~~~~~~T~~~~~id 95 (193)
T smart00331 28 EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG----------ISLSQILERLNRAIYEN--GEDGMFATLFLALYD 95 (193)
T ss_pred CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHhc--CCCCcEEEEEEEEEE
Confidence 357999999999999999999999998888766531 12455666777777654 24568999999998
Q ss_pred -eCCEEEEEEeccceEEEEe-CCeeEEcCCCCC
Q 024217 203 -GKEELVVANCGDSRAVLSR-GGVVVPLSVDHK 233 (270)
Q Consensus 203 -~~~~l~vanvGDSRa~l~r-~g~~~~LT~DH~ 233 (270)
..++++++|+||+|+|+++ ++..++++.+.+
T Consensus 96 ~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~ 128 (193)
T smart00331 96 FAGGTLSYANAGHSPPYLLRADGGLVEDLDDLG 128 (193)
T ss_pred CCCCEEEEEeCCCCceEEEECCCCeEEEcCCCC
Confidence 6789999999999999998 666666665543
No 16
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.10 E-value=8.9e-10 Score=98.70 Aligned_cols=113 Identities=23% Similarity=0.253 Sum_probs=84.5
Q ss_pred CCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcH-----HHHHHHHHHHHHHHHHHhcccCCCchHHH
Q 024217 94 KEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGAR-----VAEACKERMHEVLVEVIAGEEYGEKNIEW 168 (270)
Q Consensus 94 ~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~-----~a~~as~~l~~~l~~~~~~~~~~~~~~~~ 168 (270)
+.-||++++..+ ....+.|||||.||+. .+.|. +.|+....+..+.... ...++
T Consensus 89 ~~GEDa~Fvss~------------------~~~~v~GVADGVGGWa~~GiDpg~fS-~eLM~~ce~~v~~~~~--~~~~P 147 (330)
T KOG1379|consen 89 KGGEDAWFVSSN------------------PHAIVMGVADGVGGWAEYGIDPGAFS-RELMSNCERLVQNSDF--NPSDP 147 (330)
T ss_pred CCCCcceeeccC------------------cccceEEEccccchHhhcCcCHHHHH-HHHHHHHHHHhccccc--CCCCh
Confidence 455999999855 3789999999999664 56665 5566666666553221 23477
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEEe--CCEEEEEEeccceEEEEeCCeeEEcCCCC
Q 024217 169 ERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG--KEELVVANCGDSRAVLSRGGVVVPLSVDH 232 (270)
Q Consensus 169 ~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH 232 (270)
...|.++|.++-.+ ....-.+|||+++++. +++||+||+|||-..++|+|++++-|..+
T Consensus 148 ~~lL~~ay~~l~~~-----~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q 208 (330)
T KOG1379|consen 148 VNLLEKAYAELKSQ-----KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQ 208 (330)
T ss_pred HHHHHHHHHHHhhc-----CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchh
Confidence 88888888776544 2344578899999998 89999999999999999999877766553
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.07 E-value=8.9e-05 Score=75.66 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=88.8
Q ss_pred ceeeEEEee-eeCCCCCcceEEEecCCCCCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcc
Q 024217 81 CLSHGTMSV-IGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGE 159 (270)
Q Consensus 81 ~~~~g~~s~-~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~ 159 (270)
.+.+|++.. ++.+..+.|.+.+.... ++..+++|+||+|....|..++..+.+.+.+.+...
T Consensus 551 ~~~~g~a~~~k~g~~vsGD~y~~~~l~-----------------~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g 613 (764)
T TIGR02865 551 HVSTGVARAAKDGELVSGDSYSFGKLS-----------------AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG 613 (764)
T ss_pred eehhhHHHhcCCCCcccCceEEEEEEC-----------------CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 344444433 33467788988776432 466889999999977777777788777777665432
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEEe--CCEEEEEEeccceEEEEeCCeeEEcCCCCCC
Q 024217 160 EYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG--KEELVVANCGDSRAVLSRGGVVVPLSVDHKP 234 (270)
Q Consensus 160 ~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p 234 (270)
. . ...++..+|..+... ....+.+|+.+++|+ .+.+.++|+|+++.|+.+++++.+++..+-|
T Consensus 614 ~------~----~~~ai~~lN~~L~~~--~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP 678 (764)
T TIGR02865 614 F------D----REVAIKTVNSILSLR--STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP 678 (764)
T ss_pred C------C----HHHHHHHHHHHHHhC--CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce
Confidence 1 1 244666777776533 234578999999985 6899999999999999999998888776654
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.61 E-value=0.0016 Score=54.51 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=68.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeEEEEEe
Q 024217 124 KKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG 203 (270)
Q Consensus 124 ~~~~~f~VfDGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~ 203 (270)
++..+++|+|+.|-.-.|.+.+..+...+....... .. ....+..+|+.+... .......+|++++++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~------~~----p~~~l~~ln~~l~~~-~~~~~~~~t~~~~~~d 70 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG------LD----PEELLEALNRRLYRD-LKGDNRYATACYAIID 70 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT------TS----HHHHHHHHHHHHHHH-TTTTSTTEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC------CC----HHHHHHHHHHHHHHH-hhhccccceEEEEEec
Confidence 478899999999966666666677777777766431 12 445566667776433 1112467888888875
Q ss_pred --CCEEEEEEeccceEEEEeC--CeeEEcCCCCCC
Q 024217 204 --KEELVVANCGDSRAVLSRG--GVVVPLSVDHKP 234 (270)
Q Consensus 204 --~~~l~vanvGDSRa~l~r~--g~~~~LT~DH~p 234 (270)
.+.++++|+|++++++++. +....+.....|
T Consensus 71 ~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 71 PETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp TTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred ccceEEEEeCCCCCCEEEEeccccceeecccCccc
Confidence 5789999999999999998 455555544444
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=76.30 E-value=40 Score=30.44 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceeEEEEEeC--CEEEEEEeccceEEEEeCCee
Q 024217 173 EGCFGKMDEEVNRGRLREEMVGSTAVVAVVGK--EELVVANCGDSRAVLSRGGVV 225 (270)
Q Consensus 173 ~~af~~~d~~l~~~~~~~~~~GsTa~v~~i~~--~~l~vanvGDSRa~l~r~g~~ 225 (270)
...+..+|+.+..... ..--|++.+++.. +.+.++|.|-...++..++.+
T Consensus 208 ~~~l~~lN~~l~~~~~---~~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 208 GALLKQVNHLLRQANL---PGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHhcCC---CceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 4456677888776511 1125888777754 689999999999885444433
No 20
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.16 E-value=45 Score=30.05 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=20.5
Q ss_pred ceEEEEEc-CCCCcHHHHHHHHHHHH
Q 024217 126 YDFFGVYD-GHGGARVAEACKERMHE 150 (270)
Q Consensus 126 ~~~f~VfD-GhGG~~~a~~as~~l~~ 150 (270)
.--.+||| |.||-.+.+.+.+.|+.
T Consensus 5 ~~~IgvFDSGVGGLsVlrei~~~LP~ 30 (269)
T COG0796 5 QPPIGVFDSGVGGLSVLREIRRQLPD 30 (269)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHCCC
Confidence 34578898 89999999888888775
No 21
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.18 E-value=2e+02 Score=20.67 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHH
Q 024217 138 ARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVN 184 (270)
Q Consensus 138 ~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~ 184 (270)
...|.+.++.|.+.+.+.+....++-...+....|..-+..++.+++
T Consensus 25 ~eiG~~~Ae~LLDF~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly 71 (76)
T PF09932_consen 25 EEIGDFEAEFLLDFFIEELGPHFYNQGVQDAQAVLEERMEDLEEELY 71 (76)
T ss_pred CcHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677888888888888776333222233444455555555555554
No 22
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=20.88 E-value=1.2e+02 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=19.1
Q ss_pred CCCCCCceeEEEEEeCCEEEEEEeccc
Q 024217 189 REEMVGSTAVVAVVGKEELVVANCGDS 215 (270)
Q Consensus 189 ~~~~~GsTa~v~~i~~~~l~vanvGDS 215 (270)
...-+|||.+++ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 456789998766 78899999999977
No 23
>COG3342 Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=2.2e+02 Score=25.38 Aligned_cols=108 Identities=23% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCceEEEEEcCCC------CcHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHhc-----------
Q 024217 124 KKYDFFGVYDGHG------GARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRG----------- 186 (270)
Q Consensus 124 ~~~~~f~VfDGhG------G~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~----------- 186 (270)
...-=.+|.|-|| |.+|-+++....-+.+.-.-.. -......++|.++|+.....+...
T Consensus 78 ~~~RQvgvV~~~G~a~aFtG~ec~~~ag~~~G~~~~v~GNi----La~~evveaMA~afE~~kG~L~erLL~AL~AG~~a 153 (265)
T COG3342 78 RELRQVGVVDQKGRAAAFTGRECYEYAGHRAGENYTVQGNL----LAGPEVVEAMAKAFESAKGWLVERLLAALAAGQAA 153 (265)
T ss_pred hhheeeeEEcCCCceeeecCcchhhhhhcccCCceEeeccc----cccHHHHHHHHHhHHhccccHHHHHHHHHHhhccc
Confidence 4556678888888 8888888766554433211100 013455677777887744333322
Q ss_pred CCCCCCCCceeEEEEEeCCEEEEEEeccceEEEEeCCeeEEcCCCCCCCChhHHHHHHHc
Q 024217 187 RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKPDRHDELIRVEAA 246 (270)
Q Consensus 187 ~~~~~~~GsTa~v~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~p~~~~E~~RI~~a 246 (270)
..+....+|-|+.++-. +|-+ ..-....+-|+.|+.|+...|++|+...
T Consensus 154 GGDRrgvqSAAl~Vvk~--------~gg~---~~~~d~~vDlRVDd~~dPi~eLeRl~~l 202 (265)
T COG3342 154 GGDRRGVQSAALIVVKP--------LGGY---VGGPDYYVDLRVDDHPDPIPELERLFVL 202 (265)
T ss_pred cCccCCccceEEEEEec--------cCCC---CCCcceeEeeEeecCCCchHHHHHHHHH
Confidence 22333445555444321 1110 0011167889999999988899988653
No 24
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=20.04 E-value=97 Score=20.81 Aligned_cols=16 Identities=25% Similarity=0.752 Sum_probs=12.9
Q ss_pred hhHHHHHHHcCCEEEe
Q 024217 237 HDELIRVEAAGGRVIN 252 (270)
Q Consensus 237 ~~E~~RI~~aGg~v~~ 252 (270)
-.|.+||.+.||.|..
T Consensus 37 s~~~q~I~r~GGkIvs 52 (56)
T PF01383_consen 37 SQEMQRINRQGGKIVS 52 (56)
T ss_dssp HHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 3799999999999974
Done!