Query 024220
Match_columns 270
No_of_seqs 290 out of 2589
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.9E-33 4.2E-38 231.2 20.2 163 4-203 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 2.3E-31 4.9E-36 190.4 21.3 194 1-206 1-194 (241)
3 TIGR01645 half-pint poly-U bin 100.0 2.2E-31 4.9E-36 230.0 20.8 174 4-205 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-30 4.1E-35 218.3 20.2 162 4-202 1-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 6.6E-30 1.4E-34 222.0 20.8 172 4-203 87-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-28 2.6E-33 207.4 24.1 196 5-204 88-349 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.9E-29 1.1E-33 216.2 21.4 170 5-202 1-172 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.6E-28 7.7E-33 210.9 24.5 196 4-202 273-478 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-28 5.3E-33 216.9 19.6 158 8-202 2-165 (562)
10 KOG0148 Apoptosis-promoting RN 100.0 1.1E-28 2.4E-33 186.7 14.5 170 7-201 63-235 (321)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 8.1E-28 1.8E-32 207.7 20.4 191 5-203 57-306 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.3E-27 9.3E-32 207.1 22.1 186 3-202 172-373 (509)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-27 3.2E-32 211.8 17.9 178 5-203 177-363 (562)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.6E-27 1.6E-31 205.5 21.6 188 4-202 293-500 (509)
15 KOG0144 RNA-binding protein CU 100.0 6.8E-28 1.5E-32 193.4 13.0 169 4-207 32-209 (510)
16 KOG0145 RNA-binding protein EL 100.0 2.4E-27 5.1E-32 178.7 14.7 164 4-204 39-209 (360)
17 KOG0117 Heterogeneous nuclear 100.0 6.4E-27 1.4E-31 188.6 16.3 189 6-202 83-329 (506)
18 TIGR01622 SF-CC1 splicing fact 99.9 6.5E-26 1.4E-30 197.0 22.8 193 6-202 186-446 (457)
19 KOG0131 Splicing factor 3b, su 99.9 4E-27 8.6E-32 168.4 12.4 164 4-205 7-178 (203)
20 KOG0109 RNA-binding protein LA 99.9 1.6E-27 3.4E-32 182.3 10.9 146 7-202 3-148 (346)
21 KOG0127 Nucleolar protein fibr 99.9 5.2E-26 1.1E-30 187.6 15.6 183 7-202 6-194 (678)
22 KOG0127 Nucleolar protein fibr 99.9 2.7E-24 5.9E-29 177.5 19.3 178 5-182 116-354 (678)
23 KOG0145 RNA-binding protein EL 99.9 2.7E-24 5.9E-29 162.2 15.0 192 7-202 128-356 (360)
24 KOG0124 Polypyrimidine tract-b 99.9 5.6E-25 1.2E-29 173.4 8.7 168 7-202 114-288 (544)
25 KOG0106 Alternative splicing f 99.9 2.1E-24 4.5E-29 162.3 11.2 163 7-198 2-165 (216)
26 KOG4206 Spliceosomal protein s 99.9 2E-22 4.4E-27 150.0 18.5 197 1-201 4-219 (221)
27 KOG0123 Polyadenylate-binding 99.9 1.4E-22 3E-27 168.0 16.6 151 7-205 2-154 (369)
28 KOG0107 Alternative splicing f 99.9 2.5E-22 5.4E-27 143.0 14.1 78 124-206 10-87 (195)
29 KOG0110 RNA-binding protein (R 99.9 7.8E-23 1.7E-27 173.9 13.7 165 8-202 517-691 (725)
30 TIGR01645 half-pint poly-U bin 99.9 3.9E-20 8.4E-25 160.6 22.6 79 5-83 203-284 (612)
31 KOG0123 Polyadenylate-binding 99.9 3.4E-21 7.3E-26 159.7 15.1 168 4-203 74-245 (369)
32 PLN03134 glycine-rich RNA-bind 99.9 1.7E-20 3.8E-25 135.9 14.8 81 4-84 32-115 (144)
33 KOG1457 RNA binding protein (c 99.9 2.3E-20 5.1E-25 138.0 14.8 183 6-188 34-274 (284)
34 KOG0107 Alternative splicing f 99.9 9E-20 1.9E-24 130.1 16.4 78 4-83 8-85 (195)
35 KOG0144 RNA-binding protein CU 99.8 1.8E-20 3.9E-25 151.0 13.0 81 5-85 123-208 (510)
36 KOG0147 Transcriptional coacti 99.8 2E-20 4.3E-25 155.3 13.5 189 8-201 280-525 (549)
37 KOG0146 RNA-binding protein ET 99.8 5.6E-20 1.2E-24 139.6 13.8 193 5-201 18-362 (371)
38 KOG4205 RNA-binding protein mu 99.8 1.2E-20 2.7E-25 151.1 10.8 166 2-202 2-174 (311)
39 KOG0148 Apoptosis-promoting RN 99.8 2.3E-20 5.1E-25 141.8 10.6 139 1-205 1-143 (321)
40 KOG4207 Predicted splicing fac 99.8 1.4E-19 3.1E-24 132.3 13.7 80 4-83 11-93 (256)
41 KOG0147 Transcriptional coacti 99.8 3E-21 6.5E-26 160.1 5.0 173 4-202 177-356 (549)
42 KOG4676 Splicing factor, argin 99.8 1.3E-20 2.8E-25 150.0 5.5 182 4-187 5-213 (479)
43 KOG1190 Polypyrimidine tract-b 99.8 2.1E-18 4.5E-23 138.3 17.7 192 6-202 297-489 (492)
44 KOG4207 Predicted splicing fac 99.8 1.6E-18 3.4E-23 126.9 12.5 77 122-202 11-91 (256)
45 KOG0121 Nuclear cap-binding pr 99.8 2.2E-19 4.8E-24 121.3 6.9 80 4-83 34-116 (153)
46 KOG4211 Splicing factor hnRNP- 99.8 1.8E-17 3.9E-22 136.2 16.1 167 4-201 8-179 (510)
47 KOG0113 U1 small nuclear ribon 99.8 3.1E-17 6.8E-22 126.6 15.8 82 3-84 98-182 (335)
48 KOG4212 RNA-binding protein hn 99.8 7.9E-17 1.7E-21 130.4 17.8 183 5-187 43-281 (608)
49 PLN03120 nucleic acid binding 99.8 8E-18 1.7E-22 130.3 10.7 77 6-83 4-80 (260)
50 KOG1548 Transcription elongati 99.8 5.2E-17 1.1E-21 127.8 15.2 195 5-203 133-351 (382)
51 PF00076 RRM_1: RNA recognitio 99.8 4.2E-18 9.1E-23 108.9 7.7 68 9-76 1-70 (70)
52 TIGR01648 hnRNP-R-Q heterogene 99.7 2.3E-17 5E-22 143.3 12.9 137 5-153 232-370 (578)
53 TIGR01659 sex-lethal sex-letha 99.7 6.8E-17 1.5E-21 133.5 14.7 81 5-85 192-277 (346)
54 KOG0110 RNA-binding protein (R 99.7 9.2E-17 2E-21 137.3 14.6 191 5-202 384-596 (725)
55 PLN03121 nucleic acid binding 99.7 5E-17 1.1E-21 123.8 11.6 79 4-83 3-81 (243)
56 KOG0114 Predicted RNA-binding 99.7 4.3E-17 9.4E-22 106.1 9.0 80 4-83 16-95 (124)
57 KOG0122 Translation initiation 99.7 8.9E-17 1.9E-21 120.8 9.2 80 4-83 187-269 (270)
58 PF14259 RRM_6: RNA recognitio 99.7 1.7E-16 3.8E-21 101.3 8.1 68 9-76 1-70 (70)
59 KOG0120 Splicing factor U2AF, 99.7 2.6E-16 5.6E-21 132.5 9.0 183 5-202 288-490 (500)
60 KOG0126 Predicted RNA-binding 99.7 1.1E-17 2.4E-22 120.1 0.7 81 4-84 33-116 (219)
61 KOG1190 Polypyrimidine tract-b 99.7 2.1E-16 4.6E-21 126.9 7.8 194 3-202 25-226 (492)
62 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 105.3 14.7 83 119-205 29-115 (144)
63 KOG0125 Ataxin 2-binding prote 99.6 7.7E-16 1.7E-20 120.5 7.9 79 5-83 95-174 (376)
64 COG0724 RNA-binding proteins ( 99.6 9.3E-15 2E-19 119.2 14.6 144 6-161 115-262 (306)
65 smart00362 RRM_2 RNA recogniti 99.6 2.9E-15 6.3E-20 95.9 9.2 71 8-78 1-72 (72)
66 KOG1456 Heterogeneous nuclear 99.6 1.3E-13 2.8E-18 110.0 19.8 192 4-202 118-361 (494)
67 PLN03213 repressor of silencin 99.6 2.7E-15 5.9E-20 123.5 9.4 78 4-82 8-87 (759)
68 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3.1E-20 113.9 7.0 75 7-82 13-90 (247)
69 KOG4212 RNA-binding protein hn 99.6 8.5E-14 1.8E-18 113.1 17.4 74 122-200 534-607 (608)
70 KOG0130 RNA-binding protein RB 99.6 1.9E-15 4.1E-20 103.3 6.3 78 6-83 72-152 (170)
71 KOG0124 Polypyrimidine tract-b 99.6 1.4E-13 2.9E-18 109.6 16.9 77 7-83 211-290 (544)
72 KOG0415 Predicted peptidyl pro 99.6 1.5E-15 3.2E-20 120.1 5.5 81 4-84 237-320 (479)
73 KOG0113 U1 small nuclear ribon 99.6 6.7E-14 1.4E-18 108.4 13.7 77 122-202 99-179 (335)
74 KOG1456 Heterogeneous nuclear 99.6 3.9E-13 8.4E-18 107.2 18.0 186 4-192 285-477 (494)
75 PF13893 RRM_5: RNA recognitio 99.6 3.2E-14 6.9E-19 86.4 8.2 56 23-80 1-56 (56)
76 KOG0111 Cyclophilin-type pepti 99.6 5.4E-15 1.2E-19 109.5 5.6 84 4-87 8-94 (298)
77 cd00590 RRM RRM (RNA recogniti 99.6 5.8E-14 1.2E-18 90.3 9.6 72 8-79 1-74 (74)
78 smart00360 RRM RNA recognition 99.5 3.4E-14 7.3E-19 90.5 8.0 68 11-78 1-71 (71)
79 PF00076 RRM_1: RNA recognitio 99.5 8.4E-14 1.8E-18 88.8 7.8 66 127-196 1-69 (70)
80 KOG0108 mRNA cleavage and poly 99.5 7.4E-14 1.6E-18 117.2 9.0 79 7-85 19-100 (435)
81 KOG0130 RNA-binding protein RB 99.5 1.4E-13 3.1E-18 94.2 8.2 80 119-202 67-150 (170)
82 KOG0105 Alternative splicing f 99.5 4.9E-13 1.1E-17 96.7 10.2 79 123-205 5-84 (241)
83 KOG0109 RNA-binding protein LA 99.5 7.2E-14 1.6E-18 107.9 6.2 94 4-102 76-169 (346)
84 KOG0125 Ataxin 2-binding prote 99.5 1.7E-13 3.6E-18 107.6 8.3 78 121-202 93-172 (376)
85 KOG1365 RNA-binding protein Fu 99.5 7.8E-14 1.7E-18 111.5 5.8 188 5-201 160-359 (508)
86 KOG0117 Heterogeneous nuclear 99.5 1.9E-13 4E-18 111.4 7.5 76 7-87 260-335 (506)
87 PLN03120 nucleic acid binding 99.4 8.2E-13 1.8E-17 102.6 9.8 74 124-202 4-78 (260)
88 KOG0121 Nuclear cap-binding pr 99.4 7.3E-13 1.6E-17 90.0 7.4 78 122-203 34-115 (153)
89 smart00361 RRM_1 RNA recogniti 99.4 1.2E-12 2.6E-17 83.1 7.6 58 20-77 2-69 (70)
90 KOG0146 RNA-binding protein ET 99.4 5.4E-13 1.2E-17 101.9 5.7 81 3-83 282-365 (371)
91 KOG0114 Predicted RNA-binding 99.4 5.5E-12 1.2E-16 82.5 9.1 80 119-202 13-93 (124)
92 KOG0122 Translation initiation 99.4 1.2E-11 2.7E-16 93.4 12.3 81 119-203 184-268 (270)
93 KOG4454 RNA binding protein (R 99.4 5.9E-13 1.3E-17 98.8 4.6 140 4-188 7-151 (267)
94 PF14259 RRM_6: RNA recognitio 99.4 3.4E-12 7.4E-17 81.3 7.5 66 127-196 1-69 (70)
95 PLN03121 nucleic acid binding 99.4 6.3E-12 1.4E-16 96.2 10.0 76 123-203 4-80 (243)
96 PLN03213 repressor of silencin 99.4 4.7E-12 1E-16 104.7 9.9 76 123-202 9-86 (759)
97 KOG0132 RNA polymerase II C-te 99.3 3.6E-12 7.9E-17 110.5 8.2 76 5-83 420-495 (894)
98 KOG0120 Splicing factor U2AF, 99.3 7.5E-12 1.6E-16 105.9 10.0 179 4-202 173-367 (500)
99 KOG0129 Predicted RNA-binding 99.3 6.6E-11 1.4E-15 98.7 15.0 159 4-181 257-432 (520)
100 KOG0112 Large RNA-binding prot 99.3 2.2E-12 4.7E-17 113.6 5.0 158 4-202 370-529 (975)
101 smart00362 RRM_2 RNA recogniti 99.3 2.9E-11 6.4E-16 77.0 8.6 69 126-198 1-71 (72)
102 KOG4208 Nucleolar RNA-binding 99.2 3.1E-11 6.8E-16 89.2 7.9 79 5-83 48-130 (214)
103 KOG0131 Splicing factor 3b, su 99.2 2.5E-11 5.3E-16 87.8 6.0 79 5-83 95-177 (203)
104 KOG0116 RasGAP SH3 binding pro 99.2 1.4E-10 2.9E-15 97.2 11.1 77 6-83 288-367 (419)
105 KOG0415 Predicted peptidyl pro 99.2 3.4E-11 7.3E-16 95.7 7.1 81 118-202 233-317 (479)
106 KOG0533 RRM motif-containing p 99.2 5.7E-10 1.2E-14 86.6 13.7 78 6-83 83-162 (243)
107 KOG4211 Splicing factor hnRNP- 99.2 3.4E-10 7.3E-15 93.9 13.1 181 5-188 102-346 (510)
108 KOG0153 Predicted RNA-binding 99.2 8.9E-11 1.9E-15 93.2 8.7 78 3-83 225-303 (377)
109 cd00590 RRM RRM (RNA recogniti 99.2 2.9E-10 6.3E-15 72.7 9.1 70 126-199 1-73 (74)
110 smart00360 RRM RNA recognition 99.2 1.9E-10 4.1E-15 72.9 8.0 66 129-198 1-70 (71)
111 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.7E-15 70.4 6.2 56 141-201 1-56 (56)
112 KOG4660 Protein Mei2, essentia 99.1 9.4E-11 2E-15 98.6 5.7 159 4-180 73-231 (549)
113 KOG0126 Predicted RNA-binding 99.1 9E-12 1.9E-16 90.0 -0.8 74 125-202 36-113 (219)
114 KOG2193 IGF-II mRNA-binding pr 99.1 2.6E-11 5.7E-16 98.5 1.6 148 7-200 2-153 (584)
115 KOG4661 Hsp27-ERE-TATA-binding 99.1 6E-10 1.3E-14 94.0 8.6 80 5-84 404-486 (940)
116 KOG0149 Predicted RNA-binding 99.1 4.3E-10 9.3E-15 84.9 6.9 58 125-182 13-74 (247)
117 KOG0111 Cyclophilin-type pepti 99.1 1.6E-10 3.6E-15 86.0 4.1 78 124-205 10-91 (298)
118 PF04059 RRM_2: RNA recognitio 99.0 2.5E-09 5.4E-14 71.2 8.7 77 7-83 2-87 (97)
119 KOG0128 RNA-binding protein SA 99.0 3.4E-11 7.4E-16 105.7 -0.7 133 4-188 665-803 (881)
120 KOG0108 mRNA cleavage and poly 99.0 8.5E-10 1.8E-14 93.0 7.4 81 125-209 19-103 (435)
121 COG0724 RNA-binding proteins ( 99.0 3.5E-09 7.5E-14 86.2 9.4 75 124-202 115-193 (306)
122 KOG4205 RNA-binding protein mu 99.0 1.2E-09 2.6E-14 88.2 5.8 82 6-88 97-181 (311)
123 KOG0151 Predicted splicing reg 98.9 1.9E-08 4.2E-13 87.1 11.6 80 4-83 172-257 (877)
124 smart00361 RRM_1 RNA recogniti 98.9 1.5E-08 3.2E-13 64.3 7.1 57 138-198 2-69 (70)
125 KOG4210 Nuclear localization s 98.9 6.9E-09 1.5E-13 83.6 7.0 173 5-208 87-268 (285)
126 KOG1365 RNA-binding protein Fu 98.8 7E-08 1.5E-12 78.0 11.8 158 4-181 58-225 (508)
127 KOG4661 Hsp27-ERE-TATA-binding 98.8 4.1E-08 8.9E-13 83.2 10.7 79 121-203 402-484 (940)
128 KOG4209 Splicing factor RNPS1, 98.8 7.5E-09 1.6E-13 80.6 5.8 79 4-83 99-180 (231)
129 PF11608 Limkain-b1: Limkain b 98.8 4.1E-08 8.8E-13 62.1 7.7 70 7-83 3-77 (90)
130 KOG0106 Alternative splicing f 98.8 3E-08 6.5E-13 75.4 8.3 70 125-202 2-71 (216)
131 KOG4307 RNA binding protein RB 98.8 1.9E-07 4.2E-12 80.9 12.8 75 6-80 434-511 (944)
132 KOG4206 Spliceosomal protein s 98.7 6.8E-08 1.5E-12 72.9 8.3 75 125-203 10-89 (221)
133 KOG4307 RNA binding protein RB 98.7 1.9E-07 4.1E-12 81.0 10.8 188 5-200 310-510 (944)
134 KOG1457 RNA binding protein (c 98.7 2.6E-08 5.6E-13 74.7 4.0 64 6-70 210-273 (284)
135 KOG0132 RNA polymerase II C-te 98.6 1.3E-07 2.7E-12 83.0 7.7 76 124-205 421-496 (894)
136 KOG0226 RNA-binding proteins [ 98.6 1.3E-07 2.9E-12 72.4 5.5 159 9-200 99-266 (290)
137 PF08777 RRM_3: RNA binding mo 98.5 2.7E-07 5.9E-12 63.0 6.1 70 7-79 2-76 (105)
138 KOG0533 RRM motif-containing p 98.5 4E-07 8.8E-12 70.9 7.8 75 124-202 83-160 (243)
139 KOG0153 Predicted RNA-binding 98.5 5.8E-07 1.3E-11 71.9 7.4 79 120-203 224-302 (377)
140 KOG0226 RNA-binding proteins [ 98.5 2.3E-07 4.9E-12 71.1 4.7 77 4-80 188-267 (290)
141 KOG4454 RNA binding protein (R 98.4 2E-07 4.2E-12 69.9 2.8 68 121-188 6-75 (267)
142 KOG4676 Splicing factor, argin 98.4 2E-08 4.2E-13 81.3 -2.7 63 7-71 152-214 (479)
143 KOG1995 Conserved Zn-finger pr 98.4 1.2E-06 2.7E-11 70.6 7.4 81 4-84 64-155 (351)
144 KOG4208 Nucleolar RNA-binding 98.4 1.9E-06 4E-11 64.2 7.1 66 123-188 48-118 (214)
145 PF04059 RRM_2: RNA recognitio 98.3 6.9E-06 1.5E-10 54.8 8.9 78 125-202 2-85 (97)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.8E-05 3.9E-10 66.9 13.5 77 122-203 286-366 (419)
147 KOG0151 Predicted splicing reg 98.3 1.4E-06 3.1E-11 75.8 7.1 83 115-201 165-254 (877)
148 KOG2202 U2 snRNP splicing fact 98.3 5.4E-07 1.2E-11 69.3 4.0 63 21-83 83-148 (260)
149 KOG4660 Protein Mei2, essentia 98.3 1.2E-06 2.7E-11 74.3 5.9 71 122-197 73-143 (549)
150 KOG1548 Transcription elongati 98.2 6.2E-06 1.3E-10 66.1 8.2 76 123-202 133-219 (382)
151 PF11608 Limkain-b1: Limkain b 98.2 1.1E-05 2.4E-10 51.2 7.7 69 125-203 3-76 (90)
152 PF14605 Nup35_RRM_2: Nup53/35 98.2 4.5E-06 9.8E-11 49.3 5.2 53 6-62 1-53 (53)
153 KOG3152 TBP-binding protein, a 98.2 8.3E-07 1.8E-11 68.1 2.2 69 6-74 74-157 (278)
154 KOG4210 Nuclear localization s 98.1 3.3E-06 7E-11 68.3 5.1 79 4-83 182-264 (285)
155 PF08777 RRM_3: RNA binding mo 98.1 5.5E-06 1.2E-10 56.6 5.3 59 125-185 2-60 (105)
156 COG5175 MOT2 Transcriptional r 98.1 1.1E-05 2.4E-10 64.5 7.0 75 7-81 115-201 (480)
157 KOG2416 Acinus (induces apopto 98.1 4.8E-06 1E-10 71.3 4.5 77 4-83 442-522 (718)
158 KOG4209 Splicing factor RNPS1, 98.1 3.4E-05 7.4E-10 60.4 8.8 76 122-202 99-178 (231)
159 KOG1855 Predicted RNA-binding 97.9 2.6E-05 5.6E-10 64.4 6.6 66 5-70 230-311 (484)
160 PF05172 Nup35_RRM: Nup53/35/4 97.9 7.2E-05 1.6E-09 50.3 7.6 76 4-81 4-90 (100)
161 PF08952 DUF1866: Domain of un 97.9 7.4E-05 1.6E-09 53.3 7.8 73 4-82 25-106 (146)
162 KOG2314 Translation initiation 97.9 2.8E-05 6.1E-10 66.4 6.6 74 6-79 58-140 (698)
163 KOG0129 Predicted RNA-binding 97.9 4.6E-05 1E-09 64.5 7.7 76 4-80 368-451 (520)
164 KOG2202 U2 snRNP splicing fact 97.9 7.2E-05 1.6E-09 57.9 7.4 58 139-200 83-144 (260)
165 KOG4849 mRNA cleavage factor I 97.8 3E-05 6.6E-10 62.3 3.9 75 7-81 81-160 (498)
166 KOG0115 RNA-binding protein p5 97.8 0.00013 2.9E-09 56.4 7.2 100 57-198 6-108 (275)
167 KOG0128 RNA-binding protein SA 97.7 9E-05 2E-09 66.4 6.2 77 6-82 736-814 (881)
168 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 42.4 5.2 52 125-179 2-53 (53)
169 KOG0112 Large RNA-binding prot 97.6 8.4E-05 1.8E-09 66.9 4.7 77 4-83 453-531 (975)
170 KOG1995 Conserved Zn-finger pr 97.6 0.00027 5.8E-09 57.4 6.8 78 121-202 63-152 (351)
171 KOG1996 mRNA splicing factor [ 97.5 0.00028 6.1E-09 55.6 6.5 62 20-81 300-365 (378)
172 COG5175 MOT2 Transcriptional r 97.3 0.00079 1.7E-08 54.2 6.8 75 123-201 113-200 (480)
173 KOG2253 U1 snRNP complex, subu 97.3 2.4E-05 5.3E-10 68.0 -2.0 72 4-81 38-109 (668)
174 KOG1855 Predicted RNA-binding 97.3 0.00096 2.1E-08 55.5 7.2 64 122-185 229-309 (484)
175 KOG2314 Translation initiation 97.3 0.00085 1.8E-08 57.7 7.0 66 123-188 57-131 (698)
176 PF08675 RNA_bind: RNA binding 97.3 0.0021 4.5E-08 41.1 6.7 54 7-66 10-63 (87)
177 KOG3152 TBP-binding protein, a 97.1 0.00037 8.1E-09 53.9 2.6 65 124-188 74-154 (278)
178 PF10309 DUF2414: Protein of u 97.1 0.0064 1.4E-07 36.8 7.3 54 125-182 6-62 (62)
179 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0023 5.1E-08 43.0 5.7 63 124-188 6-79 (100)
180 KOG1996 mRNA splicing factor [ 96.9 0.0034 7.4E-08 49.7 6.5 60 139-202 301-365 (378)
181 PF07576 BRAP2: BRCA1-associat 96.9 0.011 2.5E-07 40.5 8.3 67 5-71 12-80 (110)
182 PF10309 DUF2414: Protein of u 96.8 0.0099 2.1E-07 36.0 6.6 54 7-65 6-62 (62)
183 KOG2591 c-Mpl binding protein, 96.8 0.002 4.4E-08 55.3 4.8 69 5-77 174-246 (684)
184 PF15023 DUF4523: Protein of u 96.8 0.013 2.7E-07 41.5 7.8 74 4-82 84-161 (166)
185 KOG2591 c-Mpl binding protein, 96.8 0.0077 1.7E-07 51.9 7.9 61 125-188 176-245 (684)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0017 3.7E-08 48.8 3.3 79 4-82 5-97 (176)
187 PF04847 Calcipressin: Calcipr 96.6 0.008 1.7E-07 45.4 6.6 63 18-83 7-71 (184)
188 KOG2416 Acinus (induces apopto 96.6 0.0016 3.5E-08 56.3 2.8 79 120-201 440-519 (718)
189 KOG0115 RNA-binding protein p5 96.5 0.0029 6.3E-08 49.2 3.7 74 7-80 32-111 (275)
190 PF03880 DbpA: DbpA RNA bindin 96.5 0.02 4.3E-07 36.4 7.0 58 17-80 12-74 (74)
191 KOG0835 Cyclin L [General func 96.5 0.0053 1.2E-07 49.5 4.9 12 135-146 212-223 (367)
192 PF08952 DUF1866: Domain of un 96.4 0.018 3.9E-07 41.3 6.8 52 140-200 52-103 (146)
193 KOG2068 MOT2 transcription fac 96.4 0.0015 3.3E-08 52.8 1.5 77 7-83 78-163 (327)
194 KOG4285 Mitotic phosphoprotein 96.3 0.014 3.1E-07 46.5 6.3 72 7-83 198-270 (350)
195 KOG2135 Proteins containing th 96.3 0.0025 5.4E-08 53.8 2.0 76 4-83 370-446 (526)
196 KOG2193 IGF-II mRNA-binding pr 96.2 0.00058 1.2E-08 56.6 -1.9 79 5-83 79-157 (584)
197 PF11767 SET_assoc: Histone ly 96.1 0.045 9.8E-07 33.7 6.5 55 17-77 11-65 (66)
198 PF08675 RNA_bind: RNA binding 95.8 0.044 9.5E-07 35.1 5.7 55 125-184 10-64 (87)
199 KOG0804 Cytoplasmic Zn-finger 95.8 0.032 7E-07 47.0 6.6 67 5-71 73-141 (493)
200 PF07576 BRAP2: BRCA1-associat 95.6 0.19 4.1E-06 34.6 8.7 63 126-188 15-80 (110)
201 KOG0835 Cyclin L [General func 95.4 0.039 8.5E-07 44.7 5.5 21 45-66 173-193 (367)
202 KOG2135 Proteins containing th 95.0 0.046 9.9E-07 46.5 4.9 73 124-203 372-445 (526)
203 PF07292 NID: Nmi/IFP 35 domai 95.0 0.15 3.3E-06 33.3 6.4 70 48-144 1-72 (88)
204 KOG4574 RNA-binding protein (c 94.9 0.019 4.1E-07 52.1 2.4 72 9-83 301-374 (1007)
205 KOG0804 Cytoplasmic Zn-finger 94.3 0.29 6.2E-06 41.6 7.8 65 124-188 74-141 (493)
206 KOG4849 mRNA cleavage factor I 93.7 0.15 3.3E-06 41.7 5.2 66 123-188 79-150 (498)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.095 2.1E-06 39.5 3.7 67 123-189 6-82 (176)
208 KOG2318 Uncharacterized conser 93.4 0.38 8.3E-06 42.2 7.3 79 3-81 171-306 (650)
209 PF15023 DUF4523: Protein of u 93.1 0.27 6E-06 35.0 4.9 60 124-186 86-149 (166)
210 KOG2253 U1 snRNP complex, subu 92.9 0.28 6E-06 43.7 5.9 66 118-188 34-99 (668)
211 KOG4285 Mitotic phosphoprotein 91.7 0.38 8.2E-06 38.7 4.8 58 127-188 200-257 (350)
212 KOG2068 MOT2 transcription fac 91.6 0.089 1.9E-06 42.9 1.3 65 124-188 77-151 (327)
213 PF04847 Calcipressin: Calcipr 91.0 1.2 2.5E-05 33.8 6.7 60 137-202 8-69 (184)
214 PF14111 DUF4283: Domain of un 90.9 0.33 7.1E-06 35.5 3.7 112 17-160 28-141 (153)
215 PF10567 Nab6_mRNP_bdg: RNA-re 90.5 0.63 1.4E-05 37.4 4.9 171 5-185 14-214 (309)
216 PF11767 SET_assoc: Histone ly 89.9 1.8 3.9E-05 26.7 5.6 50 134-188 10-59 (66)
217 KOG4574 RNA-binding protein (c 89.2 0.3 6.4E-06 44.8 2.6 72 127-202 301-372 (1007)
218 KOG4019 Calcineurin-mediated s 89.2 0.42 9.2E-06 35.5 2.9 78 4-84 8-91 (193)
219 KOG2888 Putative RNA binding p 87.9 0.25 5.5E-06 40.1 1.1 9 21-29 172-180 (453)
220 KOG2891 Surface glycoprotein [ 87.8 0.22 4.8E-06 39.5 0.8 67 4-70 147-247 (445)
221 PF03468 XS: XS domain; Inter 86.6 0.69 1.5E-05 32.2 2.6 59 8-67 10-78 (116)
222 KOG0796 Spliceosome subunit [R 85.8 0.52 1.1E-05 38.4 1.9 9 51-59 27-35 (319)
223 PF03880 DbpA: DbpA RNA bindin 85.4 3.5 7.6E-05 26.0 5.3 58 134-200 11-73 (74)
224 KOG4483 Uncharacterized conser 84.7 2.7 5.9E-05 35.4 5.5 57 4-63 389-445 (528)
225 KOG3580 Tight junction protein 84.1 11 0.00023 34.0 9.0 39 122-160 59-98 (1027)
226 KOG4410 5-formyltetrahydrofola 82.7 4.3 9.3E-05 32.6 5.6 46 7-55 331-377 (396)
227 PRK14548 50S ribosomal protein 81.3 6.7 0.00015 25.5 5.3 56 10-65 24-81 (84)
228 TIGR03636 L23_arch archaeal ri 80.4 8.2 0.00018 24.6 5.4 55 9-63 16-72 (77)
229 KOG4246 Predicted DNA-binding 79.8 0.88 1.9E-05 41.8 1.1 8 125-132 146-153 (1194)
230 PF14893 PNMA: PNMA 79.5 2.4 5.1E-05 35.4 3.5 55 1-55 13-72 (331)
231 KOG1295 Nonsense-mediated deca 79.4 2.3 4.9E-05 35.7 3.3 65 6-70 7-77 (376)
232 PF15513 DUF4651: Domain of un 78.1 5.8 0.00013 24.0 3.9 18 21-38 9-26 (62)
233 KOG4483 Uncharacterized conser 73.8 10 0.00022 32.2 5.6 55 124-181 391-446 (528)
234 KOG2295 C2H2 Zn-finger protein 73.5 0.4 8.7E-06 41.9 -2.5 67 6-72 231-300 (648)
235 cd04908 ACT_Bt0572_1 N-termina 70.4 21 0.00046 21.6 6.5 48 19-68 14-62 (66)
236 KOG2812 Uncharacterized conser 69.8 7.2 0.00016 32.4 3.8 8 258-265 87-94 (426)
237 PF09707 Cas_Cas2CT1978: CRISP 69.2 14 0.00031 24.1 4.4 49 4-52 23-71 (86)
238 PRK11634 ATP-dependent RNA hel 69.0 25 0.00054 32.5 7.6 61 17-83 498-563 (629)
239 KOG4008 rRNA processing protei 67.4 4.4 9.5E-05 31.7 2.1 35 4-38 38-72 (261)
240 PRK14548 50S ribosomal protein 67.0 32 0.0007 22.4 6.8 57 126-182 22-81 (84)
241 KOG4410 5-formyltetrahydrofola 66.8 23 0.0005 28.7 5.9 49 124-173 330-378 (396)
242 KOG2318 Uncharacterized conser 65.9 32 0.0007 30.9 7.1 68 121-188 171-294 (650)
243 PF02714 DUF221: Domain of unk 65.8 14 0.0003 30.8 5.1 34 48-83 1-34 (325)
244 cd04889 ACT_PDH-BS-like C-term 63.6 26 0.00057 20.2 5.9 42 21-62 13-55 (56)
245 KOG4246 Predicted DNA-binding 62.8 3.4 7.4E-05 38.3 0.9 9 133-141 196-204 (1194)
246 COG0150 PurM Phosphoribosylami 62.1 1.9 4.1E-05 35.7 -0.8 48 20-68 275-322 (345)
247 KOG4213 RNA-binding protein La 61.4 13 0.00028 27.9 3.5 49 20-71 123-175 (205)
248 TIGR03636 L23_arch archaeal ri 60.5 42 0.0009 21.4 6.7 57 126-182 15-74 (77)
249 PTZ00191 60S ribosomal protein 60.2 34 0.00075 24.8 5.4 53 11-63 86-140 (145)
250 PF14026 DUF4242: Protein of u 59.1 44 0.00096 21.2 7.7 63 8-71 2-72 (77)
251 KOG2146 Splicing coactivator S 58.9 32 0.00069 27.9 5.4 31 49-79 56-87 (354)
252 KOG3869 Uncharacterized conser 58.4 3.8 8.1E-05 34.8 0.4 8 257-264 293-300 (450)
253 PF07292 NID: Nmi/IFP 35 domai 58.3 6.2 0.00013 25.9 1.3 24 4-27 50-73 (88)
254 PF03439 Spt5-NGN: Early trans 53.2 33 0.00072 22.2 4.1 36 32-69 33-68 (84)
255 PF12091 DUF3567: Protein of u 52.9 15 0.00032 23.8 2.3 17 134-150 60-76 (85)
256 KOG1295 Nonsense-mediated deca 52.5 17 0.00037 30.7 3.2 64 125-188 8-78 (376)
257 PF11823 DUF3343: Protein of u 52.0 23 0.00049 22.1 3.1 26 46-71 2-27 (73)
258 PRK11558 putative ssRNA endonu 51.7 36 0.00077 22.8 4.0 51 4-54 25-75 (97)
259 COG5638 Uncharacterized conser 51.5 48 0.001 28.4 5.6 78 3-80 143-295 (622)
260 PF02829 3H: 3H domain; Inter 49.8 69 0.0015 21.5 5.3 51 17-67 8-58 (98)
261 KOG2891 Surface glycoprotein [ 49.3 13 0.00028 29.8 2.0 77 125-201 150-265 (445)
262 KOG4365 Uncharacterized conser 48.5 2.8 6.2E-05 35.8 -1.8 75 6-81 3-80 (572)
263 PF11411 DNA_ligase_IV: DNA li 48.1 15 0.00033 19.5 1.5 17 16-32 19-35 (36)
264 PF09902 DUF2129: Uncharacteri 47.7 51 0.0011 20.7 4.1 39 26-70 16-54 (71)
265 PF00403 HMA: Heavy-metal-asso 46.7 60 0.0013 19.1 6.4 54 8-64 1-58 (62)
266 KOG0156 Cytochrome P450 CYP2 s 45.7 47 0.001 29.7 5.1 59 10-75 36-97 (489)
267 PTZ00191 60S ribosomal protein 44.5 1.2E+02 0.0026 22.0 6.5 57 125-181 82-141 (145)
268 COG0445 GidA Flavin-dependent 43.4 1.1E+02 0.0023 27.9 6.8 38 122-159 299-336 (621)
269 PF08544 GHMP_kinases_C: GHMP 43.3 83 0.0018 19.8 6.0 43 139-182 37-79 (85)
270 PRK10629 EnvZ/OmpR regulon mod 42.9 1.2E+02 0.0026 21.5 7.9 72 5-81 34-109 (127)
271 PF10567 Nab6_mRNP_bdg: RNA-re 42.8 70 0.0015 26.2 5.1 54 124-177 15-79 (309)
272 PF01071 GARS_A: Phosphoribosy 41.1 93 0.002 23.9 5.5 60 18-78 24-86 (194)
273 PF07530 PRE_C2HC: Associated 40.6 77 0.0017 19.6 4.1 60 21-83 2-65 (68)
274 TIGR01873 cas_CT1978 CRISPR-as 40.6 69 0.0015 21.0 4.0 50 4-54 23-74 (87)
275 COG3254 Uncharacterized conser 40.5 1.2E+02 0.0025 20.7 5.6 42 21-63 27-69 (105)
276 COG0030 KsgA Dimethyladenosine 40.0 44 0.00096 27.0 3.7 32 7-38 96-127 (259)
277 PRK02302 hypothetical protein; 39.6 75 0.0016 20.9 4.0 38 27-70 23-60 (89)
278 PRK11230 glycolate oxidase sub 39.2 96 0.0021 27.8 6.1 47 20-66 203-255 (499)
279 PRK02886 hypothetical protein; 39.1 77 0.0017 20.8 4.0 38 27-70 21-58 (87)
280 KOG2295 C2H2 Zn-finger protein 38.7 6.6 0.00014 34.7 -1.1 66 123-188 230-299 (648)
281 PF14111 DUF4283: Domain of un 38.7 19 0.00042 26.0 1.5 34 8-41 106-140 (153)
282 smart00596 PRE_C2HC PRE_C2HC d 38.1 99 0.0021 19.3 4.2 58 139-203 2-64 (69)
283 cd04879 ACT_3PGDH-like ACT_3PG 38.0 86 0.0019 18.4 4.7 38 17-54 10-49 (71)
284 PF15063 TC1: Thyroid cancer p 37.1 21 0.00046 22.5 1.2 24 10-33 29-52 (79)
285 PF08442 ATP-grasp_2: ATP-gras 36.7 85 0.0018 24.3 4.7 54 18-71 25-81 (202)
286 KOG4019 Calcineurin-mediated s 36.1 32 0.00069 25.9 2.2 72 125-202 11-88 (193)
287 COG5227 SMT3 Ubiquitin-like pr 35.3 1.1E+02 0.0024 20.1 4.2 65 2-67 30-100 (103)
288 PF11061 DUF2862: Protein of u 34.0 1.1E+02 0.0024 18.8 3.9 34 17-54 15-51 (64)
289 cd04909 ACT_PDH-BS C-terminal 33.1 1.1E+02 0.0024 18.3 5.6 47 19-65 14-62 (69)
290 PF00398 RrnaAD: Ribosomal RNA 33.0 48 0.001 26.7 3.0 29 6-34 97-127 (262)
291 PF08734 GYD: GYD domain; Int 33.0 1.4E+02 0.0031 19.5 5.9 46 138-183 22-68 (91)
292 PRK09631 DNA topoisomerase IV 33.0 3.6E+02 0.0078 25.2 8.6 58 6-64 220-281 (635)
293 COG0018 ArgS Arginyl-tRNA synt 32.7 3.9E+02 0.0086 24.6 8.9 99 19-160 59-166 (577)
294 CHL00123 rps6 ribosomal protei 32.4 1.5E+02 0.0033 19.7 5.0 50 14-63 14-80 (97)
295 PRK15464 cold shock-like prote 32.4 36 0.00078 21.2 1.7 19 31-54 7-25 (70)
296 PRK11901 hypothetical protein; 32.1 1.5E+02 0.0032 24.9 5.5 60 5-68 244-307 (327)
297 COG0150 PurM Phosphoribosylami 31.9 19 0.00041 30.1 0.5 48 138-185 275-322 (345)
298 KOG2187 tRNA uracil-5-methyltr 31.4 42 0.00091 29.9 2.5 40 44-83 62-101 (534)
299 PF15407 Spo7_2_N: Sporulation 31.3 18 0.00039 22.4 0.2 24 4-27 25-48 (67)
300 PF06014 DUF910: Bacterial pro 31.2 31 0.00068 20.9 1.2 17 20-36 4-20 (62)
301 PF02714 DUF221: Domain of unk 31.2 63 0.0014 26.9 3.6 22 165-186 1-22 (325)
302 COG4747 ACT domain-containing 31.0 1.6E+02 0.0035 20.6 4.7 49 21-70 84-133 (142)
303 PF12829 Mhr1: Transcriptional 30.9 55 0.0012 21.6 2.4 52 14-66 20-72 (91)
304 PF08156 NOP5NT: NOP5NT (NUC12 30.8 18 0.00039 22.3 0.2 39 21-66 27-65 (67)
305 cd04882 ACT_Bt0572_2 C-termina 30.6 1.2E+02 0.0025 17.7 5.2 43 21-63 14-58 (65)
306 cd04883 ACT_AcuB C-terminal AC 29.7 1.3E+02 0.0029 18.1 6.3 45 19-63 14-62 (72)
307 PRK09937 stationary phase/star 29.0 48 0.0011 20.9 1.9 9 45-53 13-21 (74)
308 PRK15463 cold shock-like prote 28.7 46 0.001 20.7 1.8 19 31-54 7-25 (70)
309 PRK14998 cold shock-like prote 28.5 50 0.0011 20.7 1.9 18 31-53 4-21 (73)
310 TIGR02381 cspD cold shock doma 28.5 50 0.0011 20.3 1.9 19 31-54 4-22 (68)
311 PRK05738 rplW 50S ribosomal pr 28.5 1.8E+02 0.0039 19.2 5.1 31 9-39 22-54 (92)
312 KOG3424 40S ribosomal protein 28.5 1.5E+02 0.0031 20.7 4.1 43 17-60 34-84 (132)
313 PF07237 DUF1428: Protein of u 28.2 2E+02 0.0043 19.6 4.9 45 21-65 23-85 (103)
314 COG5193 LHP1 La protein, small 28.1 31 0.00068 29.4 1.2 58 6-63 174-244 (438)
315 PRK08559 nusG transcription an 28.0 2.4E+02 0.0053 20.6 5.9 33 33-67 36-68 (153)
316 PRK10943 cold shock-like prote 27.7 47 0.001 20.5 1.7 9 45-53 15-23 (69)
317 PRK09507 cspE cold shock prote 27.6 50 0.0011 20.4 1.8 9 45-53 15-23 (69)
318 PHA01632 hypothetical protein 27.4 67 0.0014 18.9 2.1 21 9-29 19-39 (64)
319 KOG4008 rRNA processing protei 27.3 48 0.001 26.2 1.9 32 125-156 41-72 (261)
320 PF09383 NIL: NIL domain; Int 27.0 1.6E+02 0.0035 18.3 4.2 52 16-67 12-68 (76)
321 PTZ00071 40S ribosomal protein 27.0 1.6E+02 0.0035 21.0 4.4 44 17-60 35-86 (132)
322 PF10915 DUF2709: Protein of u 26.9 1.6E+02 0.0036 22.4 4.6 33 50-83 47-79 (238)
323 cd00027 BRCT Breast Cancer Sup 26.8 95 0.002 18.1 3.1 26 7-32 2-27 (72)
324 PF00276 Ribosomal_L23: Riboso 26.5 1.3E+02 0.0028 19.8 3.7 29 10-38 23-53 (91)
325 TIGR00387 glcD glycolate oxida 26.3 1.7E+02 0.0037 25.4 5.5 49 17-65 143-197 (413)
326 COG4874 Uncharacterized protei 26.0 3.5E+02 0.0076 21.7 6.4 28 3-31 155-182 (318)
327 TIGR00755 ksgA dimethyladenosi 26.0 85 0.0018 25.1 3.3 24 8-31 96-119 (253)
328 KOG1999 RNA polymerase II tran 25.3 2.1E+02 0.0046 27.8 5.9 34 38-71 203-236 (1024)
329 PF00313 CSD: 'Cold-shock' DNA 25.1 63 0.0014 19.5 1.9 10 45-54 12-21 (66)
330 PRK09890 cold shock protein Cs 24.8 58 0.0013 20.2 1.7 18 31-53 7-24 (70)
331 PRK11901 hypothetical protein; 24.7 1.7E+02 0.0037 24.5 4.7 61 122-186 243-308 (327)
332 PRK00911 dihydroxy-acid dehydr 24.7 3.7E+02 0.0081 24.5 7.2 36 45-83 398-433 (552)
333 KOG1888 Putative phosphoinosit 24.7 1.7E+02 0.0037 27.8 5.1 68 9-80 312-384 (868)
334 PF05189 RTC_insert: RNA 3'-te 24.6 2E+02 0.0043 19.3 4.5 44 8-51 12-63 (103)
335 PF14893 PNMA: PNMA 23.7 69 0.0015 27.0 2.4 51 124-174 18-74 (331)
336 PLN02805 D-lactate dehydrogena 23.6 1.6E+02 0.0035 26.9 4.9 48 18-65 278-331 (555)
337 cd04903 ACT_LSD C-terminal ACT 23.6 1.7E+02 0.0036 17.2 6.8 49 19-67 12-64 (71)
338 PRK00274 ksgA 16S ribosomal RN 23.4 97 0.0021 25.1 3.2 22 8-29 107-128 (272)
339 PRK10354 RNA chaperone/anti-te 23.3 64 0.0014 20.0 1.7 9 45-53 16-24 (70)
340 PTZ00338 dimethyladenosine tra 23.2 94 0.002 25.7 3.1 23 8-30 103-125 (294)
341 PF01782 RimM: RimM N-terminal 23.1 1.6E+02 0.0034 18.7 3.6 24 45-69 54-77 (84)
342 PF12993 DUF3877: Domain of un 22.7 1.7E+02 0.0036 22.0 3.9 17 16-32 107-123 (175)
343 PF01842 ACT: ACT domain; Int 22.4 1.7E+02 0.0037 16.9 4.5 46 20-65 14-61 (66)
344 COG0045 SucC Succinyl-CoA synt 22.2 5.1E+02 0.011 22.4 7.1 66 18-83 26-98 (387)
345 cd04458 CSP_CDS Cold-Shock Pro 21.8 81 0.0018 18.9 1.9 10 45-54 12-21 (65)
346 cd04878 ACT_AHAS N-terminal AC 21.6 1.8E+02 0.004 17.0 6.8 59 8-66 2-63 (72)
347 PRK06737 acetolactate synthase 21.5 2.3E+02 0.005 18.0 6.1 59 8-68 6-67 (76)
348 cd04874 ACT_Af1403 N-terminal 21.5 1.9E+02 0.0041 17.0 6.6 48 19-66 13-61 (72)
349 PF02222 ATP-grasp: ATP-grasp 21.3 3.4E+02 0.0074 20.3 5.5 49 136-184 15-63 (172)
350 PF13820 Nucleic_acid_bd: Puta 21.2 2.4E+02 0.0052 20.7 4.5 58 8-66 6-66 (149)
351 PF08206 OB_RNB: Ribonuclease 21.0 78 0.0017 18.7 1.7 11 44-54 7-17 (58)
352 smart00650 rADc Ribosomal RNA 20.6 1.5E+02 0.0032 21.9 3.5 23 7-29 78-100 (169)
353 COG0090 RplB Ribosomal protein 20.4 1.1E+02 0.0024 24.7 2.8 25 121-145 124-148 (275)
354 KOG0291 WD40-repeat-containing 20.4 28 0.0006 32.4 -0.5 20 44-63 380-399 (893)
355 PRK05192 tRNA uridine 5-carbox 20.3 4.2E+02 0.0092 24.7 6.8 100 48-196 239-364 (618)
356 PRK12758 DNA topoisomerase IV 20.3 6.1E+02 0.013 24.7 7.9 59 6-65 241-303 (869)
357 KOG3702 Nuclear polyadenylated 20.1 56 0.0012 29.9 1.2 70 8-78 513-585 (681)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.9e-33 Score=231.25 Aligned_cols=163 Identities=23% Similarity=0.328 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||+++|+++|+++|+.||+|++|+|+. ++.++|||||+|.++++|++||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3568999999999999999999999999999999954 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~~-----------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccc-----------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 64310 1123589999999999999999999999999999998876
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ ++|||+|.+.++|++|++.|++..+.+. ...|.|..++.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~--~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG--SQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCc
Confidence 43 5999999999999999999999988621 36777777653
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=190.40 Aligned_cols=194 Identities=66% Similarity=1.109 Sum_probs=161.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|+++.+++|||+|||.++-+.+|+.||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999887778899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... ......+.+.+++.+ +.+.+....++.......|.|.+||....|+||++++.+.|.|+...+.++.
T Consensus 81 rggr----~s~~~~G~y~gggrg-----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGGGRG-----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCCCCC-----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8653 222222333332222 2222233446677788999999999999999999999999999999999885
Q ss_pred CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCCC
Q 024220 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 161 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
++.|+|...++++.|+.+|+...+........|.|.......+
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~ 194 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQ 194 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCcc
Confidence 8999999999999999999999888655567777776654433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.2e-31 Score=229.98 Aligned_cols=174 Identities=20% Similarity=0.323 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||+.+++++|+++|..||+|.+|.|.. +++++|||||+|.++++|..|++.|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999954 5789999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
......... ............+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 432110000 00001112234689999999999999999999999999999999875
Q ss_pred C----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024220 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
. .|||||+|.+.++|.+|++.||+..+. |..|+|..+..++
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 4 369999999999999999999999998 9999998877543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.9e-30 Score=218.27 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=141.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.++|||+|||+.+++++|.++|+.||+|.+|.|+. ++.++|||||+|.++++|.+||+.|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3578999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||+|||..+++++|.++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 65411 1123689999999999999999999999999999888764
Q ss_pred C----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
. .|||||+|.+.++|+.|++.|+|..+.+. ...|.+.++.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~ 169 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFAN 169 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECC
Confidence 3 36999999999999999999999987622 3456777665
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=6.6e-30 Score=221.99 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=145.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|.++|+.||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|+++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.............. ........+|||+|||..+++++|+++|..||.|..|.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 54322111100000 0001125799999999999999999999999999999999876
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|..|+..|+|..+. ++.|.|.++..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEccC
Confidence 54 69999999999999999999999988 89999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.2e-28 Score=207.39 Aligned_cols=196 Identities=21% Similarity=0.260 Sum_probs=144.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||+.+++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999855 35789999999999999999999999999876 6788888
Q ss_pred cCCCCCCCCCC-CCCCC------CCCCCCC----------CC-----------C--------------------CCCCCC
Q 024220 80 AHGGSGRGPSS-SDRRG------GYGGGGA----------GG-----------A--------------------GGAGAG 111 (270)
Q Consensus 80 ~~~~~~~~~~~-~~~~~------~~~~~~~----------~~-----------~--------------------~~~~~~ 111 (270)
+.......... ..... ....... .. . ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86543111000 00000 0000000 00 0 000000
Q ss_pred CC--------CC-CCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHH
Q 024220 112 AG--------AG-RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 112 ~~--------~~-~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a 178 (270)
.. .+ ........+.+|||+|||..+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00 00 0001123345799999999999999999999999999999998763 37999999999999999
Q ss_pred HHhcCCccccCcccccceeeecCCCC
Q 024220 179 IRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 179 ~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+..|||..+. ++.|+|.+....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999998 999999987643
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=4.9e-29 Score=216.25 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=139.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc--CCccccCeeEEEEecCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~~~ 82 (270)
|+++|||+|||..+++++|.++|+.||.|..|.|+.. ++||||+|.++++|..|+..| ++..|.|++|.|+|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999999753 789999999999999999864 78999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 024220 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
........ ... .........+|+|.||+..+++++|.++|+.||.|..|.++.+...
T Consensus 78 ~~~~~~~~----~~~-------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF-------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc-------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0001112357999999999999999999999999999999887766
Q ss_pred cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++|||+|.+.++|.+|++.|||..+.+. .+.++|.+++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999999632 2467777665
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=3.6e-28 Score=210.89 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+|+++|.++|+.||.|..|+++.+ .+|||||+|.++++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4778999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--ceEEEEe
Q 024220 83 GSGRGPSSS---DRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVS 157 (270)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~ 157 (270)
......... .....+............. ...........+..+|||.|||..+++++|+++|..||. |..+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~-~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKK-PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCC-cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 532111110 0000000000000000000 000011112245679999999999999999999999998 7778776
Q ss_pred eCC--CCcEEEEEeCChhhHHHHHHhcCCccccCcc--cccceeeecCC
Q 024220 158 RDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW--ARGRITVKRYD 202 (270)
Q Consensus 158 ~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~--~~~~i~v~~~~ 202 (270)
... ..++|||+|.+.++|.+|+..|||..+.+.. ....++|.+++
T Consensus 430 ~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 430 PKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 543 2369999999999999999999999998221 11247777764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.4e-28 Score=216.88 Aligned_cols=158 Identities=27% Similarity=0.436 Sum_probs=138.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+|||+|||+++|+++|.++|+.||+|.+|.|.. +++++|||||+|.+.++|++|++.||+..|.|++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 46789999999999999999999999999999999999975321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---
Q 024220 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--- 161 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--- 161 (270)
.. ......+|||+|||.++++++|.++|+.||.|..|++..+..
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 10 001124799999999999999999999999999999988754
Q ss_pred CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|||||+|.+.++|.+|+++++|..+. +..|.+....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 379999999999999999999999988 7888776554
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=186.72 Aligned_cols=170 Identities=20% Similarity=0.277 Sum_probs=144.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-|||+.|.+.++-++|++.|.+||+|.+++++. |++++|||||-|.+.++|+.||..|||..|+++.|+..|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3599999999999999999999999999999955 6799999999999999999999999999999999999999766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g 163 (270)
...... ........+.......++||++|++..+++++|++.|+.||.|..|.+.++. |
T Consensus 143 p~e~n~-------------------~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--G 201 (321)
T KOG0148|consen 143 PSEMNG-------------------KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--G 201 (321)
T ss_pred ccccCC-------------------CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--c
Confidence 311000 0011112234455677999999999999999999999999999999999987 6
Q ss_pred EEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 164 ~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|+||.|++.|.|..||..+|+.++. +..++-.+.
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~----G~~VkCsWG 235 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWG 235 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeC----ceEEEEecc
Confidence 9999999999999999999999998 555554443
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=8.1e-28 Score=207.72 Aligned_cols=191 Identities=23% Similarity=0.312 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccc-CeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
..++|||+|||.++++++|.++|++||.|.+|+|+. ++.++|||||+|.++++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 358999999999999999999999999999999965 4688999999999999999999999998884 7887776654
Q ss_pred CCCCCC----CC-CC-----C---CCC-------CC----CCCCCCCCC-------------------CC----CC----
Q 024220 82 GGSGRG----PS-SS-----D---RRG-------GY----GGGGAGGAG-------------------GA----GA---- 110 (270)
Q Consensus 82 ~~~~~~----~~-~~-----~---~~~-------~~----~~~~~~~~~-------------------~~----~~---- 110 (270)
.....- +. .. . ... -+ ......+-+ +. +.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 211000 00 00 0 000 00 000000000 00 00
Q ss_pred ---CCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCc
Q 024220 111 ---GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
...............+|||+||+..+++++|+++|+.| |.|..|.++.+ ||||+|++.++|++|++.||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCC
Confidence 00000001112335689999999999999999999999 99999988764 9999999999999999999999
Q ss_pred cccCcccccceeeecCCC
Q 024220 186 EFRNPWARGRITVKRYDR 203 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~~ 203 (270)
.|. ++.|.|.+++.
T Consensus 293 ~i~----Gr~I~V~~Akp 306 (578)
T TIGR01648 293 ELE----GSEIEVTLAKP 306 (578)
T ss_pred EEC----CEEEEEEEccC
Confidence 998 99999998864
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.3e-27 Score=207.08 Aligned_cols=186 Identities=19% Similarity=0.294 Sum_probs=137.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+...++|||+|||+.+|+++|.++|.+| +.|..+.+ ...+|||||+|.++++|..||. |+|+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 24444444 3458999999999999999996 999999
Q ss_pred cCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Q 024220 71 DGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 71 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 150 (270)
.|+.|.|.................. .......... ..............+|||+|||..+++++|+++|..||.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQ---KNPDDNAKNV---EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred eCceeEecCccccCCccccCCCCCC---CCCccccccc---ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 9999999765543211100000000 0000000000 000011112234579999999999999999999999999
Q ss_pred ceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 151 VCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..+.++.+.. .|||||+|.+.++|..|++.|+|..+. +..|.|..+.
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 99999887653 369999999999999999999999998 8889888875
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.5e-27 Score=211.85 Aligned_cols=178 Identities=22% Similarity=0.347 Sum_probs=146.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccc----CeeEEEE
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v~ 78 (270)
..++|||+|||.++|+++|.++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|||..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999654 567899999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 024220 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 158 (270)
++..+..+........... .........+.+|||+||+..+++++|+++|+.||.|..++++.
T Consensus 257 ~a~~k~er~~~~~~~~~~~-----------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEEL-----------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHhh-----------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 8876533211110000000 00011123457899999999999999999999999999999998
Q ss_pred CCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 159 DSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 159 ~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+.. .|||||+|.+.++|.+|+..|||..+. ++.|.|..+.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~ 363 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQR 363 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccC
Confidence 753 379999999999999999999999998 99999988774
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=7.6e-27 Score=205.53 Aligned_cols=188 Identities=18% Similarity=0.274 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..++|||+|||..+|+++|.++|..||.|..+.|.. ++.++|||||+|.+.++|..|+..|||+.|+|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999854 5778999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC----------CHHHHHHHHHhcCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAGD 150 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~ 150 (270)
............. ..... .. ..... ..........+...|+|.|+.... ..++|+++|.+||.
T Consensus 373 ~~~~~~~~~~~~~--~~~~~-~~--~~~~~--~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 373 CVGANQATIDTSN--GMAPV-TL--LAKAL--SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred ccCCCCCCccccc--ccccc-cc--ccccc--hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 7542221111000 00000 00 00000 000001122346789999986321 23678999999999
Q ss_pred ceEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 151 VCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~~~-------~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..|.|+.+.. .|++||+|++.++|++|+..|||..|. |+.|.+.+..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 99999987521 269999999999999999999999998 8999887764
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.8e-28 Score=193.39 Aligned_cols=169 Identities=22% Similarity=0.369 Sum_probs=144.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcc-cc--CeeEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYN-FD--GCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~--g~~l~v 77 (270)
.+.-.|||+-||..++|.||+++|++||.|.+|.|++ ++.++|+|||.|.+.++|.+|+..|++.. |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456799999999999999999999999999999955 56899999999999999999999999854 43 478999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEe
Q 024220 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
+++.....+. ....+|||+-|+..+++.+++++|++||.|++|.|.
T Consensus 112 k~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 112 KYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred cccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 9887552221 234789999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCCCC
Q 024220 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 158 ~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
++..+ |||||.|.+.+.|..|++.|||.... ..+...+.|++++-.+++
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCc
Confidence 98765 79999999999999999999998764 234677889998855443
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=178.69 Aligned_cols=164 Identities=22% Similarity=0.333 Sum_probs=143.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..+.|.|.-||..+|+|+|+.||...|+|++|+++. ++.+.||+||.|-++++|++|+..|||..|..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4457799999999999999999999999999999955 5789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... ...+.+|||.+||..+|..+|+++|+.||.|+.-.+..+.
T Consensus 119 RPSs~-----------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSSD-----------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCChh-----------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 87522 2234689999999999999999999999999877666665
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+ |.+||.|+...+|++||..|||..-.+ +...|.|+++..+
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g--~tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG--CTEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCC--CCCCeEEEecCCc
Confidence 43 699999999999999999999988653 3667889988754
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.4e-27 Score=188.63 Aligned_cols=189 Identities=24% Similarity=0.318 Sum_probs=141.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccc-cCeeEEEEecC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELAH 81 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~~~ 81 (270)
.|-|||+.||.++.+++|.-||...|+|-+++|+.+ +.++|||||+|.+.++|+.|+..||+..| -|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 478999999999999999999999999999999664 78999999999999999999999999999 59999998875
Q ss_pred CCCC-------CCCCC----------------------CCCCCCCCC------------------CCCCCCCCCCCCCC-
Q 024220 82 GGSG-------RGPSS----------------------SDRRGGYGG------------------GGAGGAGGAGAGAG- 113 (270)
Q Consensus 82 ~~~~-------~~~~~----------------------~~~~~~~~~------------------~~~~~~~~~~~~~~- 113 (270)
.+.. +.... .......++ ..++.-.--+....
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 3321 00000 000000000 00000000000000
Q ss_pred ------CCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccc
Q 024220 114 ------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 114 ------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
.............|||.||+.++|++.|+++|..||.|+.|+.++| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 0011112233468999999999999999999999999999999987 999999999999999999999999
Q ss_pred cCcccccceeeecCC
Q 024220 188 RNPWARGRITVKRYD 202 (270)
Q Consensus 188 ~~~~~~~~i~v~~~~ 202 (270)
. |..|.|..++
T Consensus 319 d----G~~iEvtLAK 329 (506)
T KOG0117|consen 319 D----GSPIEVTLAK 329 (506)
T ss_pred c----CceEEEEecC
Confidence 9 8888877665
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.5e-26 Score=197.03 Aligned_cols=193 Identities=23% Similarity=0.329 Sum_probs=140.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+|+++|.++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999653 57799999999999999999999999999999999999764
Q ss_pred CCCCCCCCCCCC-------CCC-----------------CCCCCCCCCCCCC------------------------CCC-
Q 024220 83 GSGRGPSSSDRR-------GGY-----------------GGGGAGGAGGAGA------------------------GAG- 113 (270)
Q Consensus 83 ~~~~~~~~~~~~-------~~~-----------------~~~~~~~~~~~~~------------------------~~~- 113 (270)
............ .+. ...+....++... ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 322111100000 000 0000000000000 000
Q ss_pred --C-CCCCC---CCCCcceEEEeCCCCCCC----------HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHH
Q 024220 114 --A-GRFGI---SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (270)
Q Consensus 114 --~-~~~~~---~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~ 177 (270)
. ..... ......+|+|.||....+ .+||++.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 00000 124557889999854443 3579999999999999999876667899999999999999
Q ss_pred HHHhcCCccccCcccccceeeecCC
Q 024220 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 178 a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.|||..+. |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 9999887654
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=4e-27 Score=168.38 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=141.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+...||||+||+..++++.|++||-+.|+|.++.+.. +...+|||||+|.++|+|+-|++.||...|.|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999999954 4578999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEeeC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~ 159 (270)
... ......+.++||+||.+.+++..|-+.|+.||.+.. -+++.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 521 111223478999999999999999999999998876 366666
Q ss_pred CCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024220 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 160 ~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
..+ +++||.|.+.+.+..|+..|+|..+. .+.|+|.++.+..
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKKD 178 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEecC
Confidence 553 59999999999999999999999998 8888888876543
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=182.26 Aligned_cols=146 Identities=33% Similarity=0.591 Sum_probs=135.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
-.|||+|||..+++.+|+.||.+||+|.+|.|+ +.||||-.++...|..|+..|||..|+|..|.|+.++++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 369999999999999999999999999999998 78999999999999999999999999999999999887621
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEE
Q 024220 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~f 166 (270)
...+|+|+|+.+.++.++|+..|++||+|+.++|.++ |+|
T Consensus 77 ------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 77 ------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred ------------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 2368999999999999999999999999999999997 999
Q ss_pred EEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|.|+..++|..|+..|+++++. |..+.|..+.
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999999 8888776654
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.2e-26 Score=187.56 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=146.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-||||++||+.++.++|.++|+.+|+|..+.+... +.++|||||.|+=.|+++.|+..+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999543 467999999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
...................- ..........+.+.|+|.|||..+...+|+.+|+.||.|..|.|+....+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q---------~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQ---------KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccchhcccccchhhhccccc---------CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 43321111100000000000 00000111234689999999999999999999999999999999977655
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 --g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|....+|..|++.+|+.+|. |+.|.|+++-
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV 194 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAV 194 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeec
Confidence 69999999999999999999999999 9999988864
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-24 Score=177.50 Aligned_cols=178 Identities=20% Similarity=0.339 Sum_probs=132.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+--.|+|.|||+.|.+.+|..+|+.||.|.+|.|.. +++..|||||+|.+.-+|..|++.||+..|+|++|.|.|+.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 356799999999999999999999999999999943 567779999999999999999999999999999999999976
Q ss_pred CCCCCCCC-------------CCCCC---CCCC-------CCCCC-----CC--------------------CC-CCCCC
Q 024220 83 GSGRGPSS-------------SDRRG---GYGG-------GGAGG-----AG--------------------GA-GAGAG 113 (270)
Q Consensus 83 ~~~~~~~~-------------~~~~~---~~~~-------~~~~~-----~~--------------------~~-~~~~~ 113 (270)
+..-.... ..... .-+. ..... .+ .. ++...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 53322100 00000 0000 00000 00 00 00000
Q ss_pred CCCC------CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhc
Q 024220 114 AGRF------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 114 ~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l 182 (270)
.... ......+.+|||.|||+++|+++|.++|++||+|..+.+..++.+ |.|||.|.+...|+.||...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0000 111233579999999999999999999999999999999888766 69999999999999999876
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.7e-24 Score=162.25 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=144.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEEecC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~ 81 (270)
..|||.+||+.+|..||+++|++||.|..-+|.. ++.++|.|||.|...++|+.|+..|||..--| .+|.|+++.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 4799999999999999999999999998877743 57899999999999999999999999987754 689999998
Q ss_pred CCCCCCCCCC-CCC-CCCCCCCCCCC------------------------CCCCCCC--CCCCCCCCCCCcceEEEeCCC
Q 024220 82 GGSGRGPSSS-DRR-GGYGGGGAGGA------------------------GGAGAGA--GAGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 82 ~~~~~~~~~~-~~~-~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~~~l~v~~l~ 133 (270)
.......... ... .......+|.. ....... .+...+.....+++|||-||.
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 7633221100 000 00000000000 0000000 000112233457999999999
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+++++..|-++|..||.|..|++++|..+ ||+||.+.+.++|..|+..|||..+. ++.+.|.+..
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFKt 356 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFKT 356 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEec
Confidence 99999999999999999999999998653 79999999999999999999999998 8888887653
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.6e-25 Score=173.43 Aligned_cols=168 Identities=20% Similarity=0.333 Sum_probs=141.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|.|||+.|.+.+.++.|+..|..||+|++|.|- .+++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 689999999999999999999999999999994 46789999999999999999999999999999999999843322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
..-.+ ..+........-+.|||..+.+++.++||+..|+-||+|..|.+.+++.+
T Consensus 194 pQAQp------------------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQP------------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccch------------------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 10000 00000111223469999999999999999999999999999999988654
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
||+|++|.+.....+|+..||-..++ |.+++|...-
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~v 288 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCV 288 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEeccccc
Confidence 69999999999999999999999988 8888876654
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=162.32 Aligned_cols=163 Identities=40% Similarity=0.698 Sum_probs=135.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||++||+.+.+.+|..||..||.|.++.|+ .||+||+|.++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 369999999999999999999999999999998 689999999999999999999999999999888888754111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEE
Q 024220 87 GPSSSDRRGGYGGGGAGGAGGAGAGA-GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYG 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~ 165 (270)
. +. ++++... .......+....+.++|.+++..+.+.+|.++|..+|.+....++. +++
T Consensus 77 ~---------------g~-~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~ 136 (216)
T KOG0106|consen 77 R---------------GR-PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFA 136 (216)
T ss_pred c---------------CC-CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----ccc
Confidence 1 00 0000001 1234455667789999999999999999999999999996555533 489
Q ss_pred EEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 166 VVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 166 fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
||+|...++|..|+..|++..+. ++.|.+
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred ceeehhhhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999999999999 888888
No 26
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.91 E-value=2e-22 Score=150.03 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=147.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|+..++.||||.||+..+..++|.. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|++|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3457788999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCC----CCCCCCC--------CCCC-CCCCCC-CCCCCCCCC-CCCCCCcceEEEeCCCCCCCHHHH
Q 024220 77 VELAHGGSGRGPSSS----DRRGGYG--------GGGA-GGAGGA-GAGAGAGRF-GISRHSEYRVIVRGLPSSASWQDL 141 (270)
Q Consensus 77 v~~~~~~~~~~~~~~----~~~~~~~--------~~~~-~~~~~~-~~~~~~~~~-~~~~~~~~~l~v~~l~~~~~~~~l 141 (270)
|+|++.......... ....... .... .+.... .....+.+. .....+...+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999987643221110 0000000 0000 000000 000001111 334567789999999999999999
Q ss_pred HHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 142 KDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 142 ~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+|..|.....+.++.... +.|||+|.+...|..|...++|..+.. ...+.+.++
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~---~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK---KNTMQITFA 219 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc---CceEEeccc
Confidence 99999999888888776554 499999999999999999999988863 444444443
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.4e-22 Score=167.96 Aligned_cols=151 Identities=26% Similarity=0.403 Sum_probs=135.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
.+|||| +++|+.+|.++|+.+|+|..+++..+-.+.|||||.|.++++|.+||..||...|.|++|.|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 478999 899999999999999999999994332399999999999999999999999999999999999986441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--cE
Q 024220 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~ 164 (270)
..+||.||+++++..+|.++|+.||.|+.|++..+..+ ||
T Consensus 77 --------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 77 --------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred --------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 12999999999999999999999999999999998876 68
Q ss_pred EEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024220 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
||+|++.+.|.+|++.+||..+. +..|-+....+..
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERKE 154 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccchh
Confidence 99999999999999999999998 8888776665433
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=143.02 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=71.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.++|||+||+..+++.+|+.+|..||+|..|.|...++ |||||+|+++.+|+.|+..|+|+.|. +..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-GfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-GFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-CceEEeccCcccHHHHHhhcCCcccc----CceEEEEeecC
Confidence 58999999999999999999999999999999988554 69999999999999999999999998 99999999885
Q ss_pred CCC
Q 024220 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=7.8e-23 Score=173.90 Aligned_cols=165 Identities=23% Similarity=0.421 Sum_probs=140.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CC----CCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|..|+|..|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 22 245999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
........ ...........|+|.|||+..+..+++++|..||.|..|.++....
T Consensus 597 ~k~~~~~g--------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~ 650 (725)
T KOG0110|consen 597 NKPASTVG--------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG 650 (725)
T ss_pred Cccccccc--------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc
Confidence 43211110 1122223367999999999999999999999999999999887622
Q ss_pred ----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 162 ----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|||||+|-++.+|..|+++|.++.+- |+++.++++.
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~ 691 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAK 691 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhc
Confidence 269999999999999999999999998 9999988876
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=3.9e-20 Score=160.63 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+.+++++|.++|+.||.|..+.|.. ++.++|||||+|.+.++|.+|+..||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 35789999999999999999999999999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.4e-21 Score=159.72 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=143.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++...|||.||+++++..+|..+|+.||+|.+|++..+ ..++|| ||+|+++++|.+|+..|||..+.|++|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 44555999999999999999999999999999999654 348999 9999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 024220 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
...+...... ....-..++|.+++.+++++.|.++|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6443322211 1223357999999999999999999999999999999987554
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|+||.|+++++|..|++.|++..+. +..+.|..+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999987 66776666654
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.7e-20 Score=135.94 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+++|||+|||+.+++++|+++|.+||+|.+|.|.. ++.+++||||+|.++++|+.|++.||+..|+|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999964 4678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7653
No 33
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=138.02 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=131.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCC----CcEEEEEECCHHHHHHHHHhcCCcccc---CeeEEEE
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRP----PCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVE 78 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~ 78 (270)
-+||||.+||.++.+-+|..||..|--.+...|+.+.+. +-+|||.|.+.++|..|++.|||+.|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999987888888766543 489999999999999999999999995 8899999
Q ss_pred ecCCCCCCCCCCCCCCCCCCC---------CCC---------C-CCCCCCCCCC--------------------------
Q 024220 79 LAHGGSGRGPSSSDRRGGYGG---------GGA---------G-GAGGAGAGAG-------------------------- 113 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~---------~~~---------~-~~~~~~~~~~-------------------------- 113 (270)
+++...+.+........+... ... + ..+..-...+
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 998764433221111000000 000 0 0000000000
Q ss_pred ------CCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccc
Q 024220 114 ------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 114 ------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
............+|||.||...+++++|+++|+.|.....+++........||++|++.+.|..|+..|+|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 00001111233589999999999999999999999877666655443334999999999999999999999988
Q ss_pred c
Q 024220 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
.
T Consensus 274 s 274 (284)
T KOG1457|consen 274 S 274 (284)
T ss_pred c
Confidence 6
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=9e-20 Score=130.06 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...+.|||+||+..+++.||+.+|..||+|..|.|.. .+.|||||||+++.+|+.|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999999864 56899999999999999999999999999999999998765
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.8e-20 Score=151.03 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcc-cc--CeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN-FD--GCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~--g~~l~v~~ 79 (270)
+.+.|||+.|++.+||++|+++|++||.|++|.|..+ +.++|+|||.|.+.|-|..||+.|||.. +. ..+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 3678999999999999999999999999999999764 6899999999999999999999999944 44 47999999
Q ss_pred cCCCCC
Q 024220 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 976543
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=2e-20 Score=155.32 Aligned_cols=189 Identities=23% Similarity=0.327 Sum_probs=133.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
.|||+||-+++++++|..+|+.||.|+.|.+.. +|.++|||||+|.+.++|.+|+..|||+.|.|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 399999999999999999999999999999954 68899999999999999999999999999999999998776553
Q ss_pred CCCCC---CCCCCCCCCCCC---CCCC--------CCCC----------------C------CC-CCCCCCCCC------
Q 024220 85 GRGPS---SSDRRGGYGGGG---AGGA--------GGAG----------------A------GA-GAGRFGISR------ 121 (270)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~---~~~~--------~~~~----------------~------~~-~~~~~~~~~------ 121 (270)
..... ..+....-..+. .++. .+.+ . ++ .......+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 33221 111110000000 0000 0000 0 00 000011111
Q ss_pred -CCcceEEEeCCCCC--CC--------HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCc
Q 024220 122 -HSEYRVIVRGLPSS--AS--------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 -~~~~~l~v~~l~~~--~~--------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.+..++.+.|+-.. .| .+|+.+.|.+||.|+.|.+..+.. |+.||.|.+.+.|..|+..|||..|.
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~-- 516 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA-- 516 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc--
Confidence 44556666776322 22 247888999999998777766655 79999999999999999999999999
Q ss_pred ccccceeeecC
Q 024220 191 WARGRITVKRY 201 (270)
Q Consensus 191 ~~~~~i~v~~~ 201 (270)
++.|...+-
T Consensus 517 --gr~Ita~~~ 525 (549)
T KOG0147|consen 517 --GRMITAKYL 525 (549)
T ss_pred --cceeEEEEe
Confidence 888876653
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.6e-20 Score=139.61 Aligned_cols=193 Identities=21% Similarity=0.273 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCc-ccc--CeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGY-NFD--GCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~--g~~l~v~~ 79 (270)
+.+.|||+.|.+.-+|||++.+|..||.|++|.+.. ++.++|+|||.|.+.-+|+.||..|+|. .+- ...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568899999999999999999999999999999954 6789999999999999999999999994 343 36788888
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q 024220 80 AHGGSGRGP----------------------------------------------------------------------- 88 (270)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (270)
+....++.-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 863322000
Q ss_pred CCCCC----------------------CCCCCCCCC--CCCC---------CCCCCCC----------------------
Q 024220 89 SSSDR----------------------RGGYGGGGA--GGAG---------GAGAGAG---------------------- 113 (270)
Q Consensus 89 ~~~~~----------------------~~~~~~~~~--~~~~---------~~~~~~~---------------------- 113 (270)
..... ..++.+... .+.+ -..++.+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000 000000000 0000 0000000
Q ss_pred C-----------------CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc----EEEEEeCCh
Q 024220 114 A-----------------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNP 172 (270)
Q Consensus 114 ~-----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~~fv~f~~~ 172 (270)
+ ......-..+|+|||..||....+.+|.+.|-.||.|+..++..|..++ |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 0001122568999999999999999999999999999999999887664 999999999
Q ss_pred hhHHHHHHhcCCccccCcccccceeeecC
Q 024220 173 EDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 173 ~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..|+.||..|||.+|+ -++++|...
T Consensus 338 ~SaQaAIqAMNGFQIG----MKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG----MKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhh----hhhhhhhhc
Confidence 9999999999999998 677776654
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=1.2e-20 Score=151.06 Aligned_cols=166 Identities=18% Similarity=0.317 Sum_probs=136.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+..+.++|||++|+..++++.|.+.|.+||+|.+|.++. ++.+++|+||+|++++.+..+|. ...+.|+|+.|.++
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 445789999999999999999999999999999999966 46889999999999999999998 66789999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 024220 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 158 (270)
.+.+......... ......|||++||..+++++++++|.+||.|..+.++.
T Consensus 81 ~av~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~ 131 (311)
T KOG4205|consen 81 RAVSREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMY 131 (311)
T ss_pred eccCccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEee
Confidence 8877633221111 11356999999999999999999999999999999888
Q ss_pred CCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 159 DSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 159 ~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+... +|+||.|.+.+.+.+++. .+-..+. +..+.|+.+.
T Consensus 132 d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 132 DKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred cccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 8655 699999999999988876 4444554 5555555544
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.3e-20 Score=141.82 Aligned_cols=139 Identities=27% Similarity=0.420 Sum_probs=117.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.+++.+||||+||...+|++-|.+||+++|.|..++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45688899999999999999999999999999999999743 4566665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..... ++. +....-..+||+.|...++-++|++.|.+||+|.++++++|.
T Consensus 49 ~~p~n--Qsk----------------------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGN--QSK----------------------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCccc--CCC----------------------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 54311 111 111123579999999999999999999999999999999997
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ ||+||.|...++|+.||..|+|..|. ++.|+..++.+.+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 65 69999999999999999999999999 9999999998876
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=132.31 Aligned_cols=80 Identities=34% Similarity=0.524 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.+|.|.||.+.+++++|..+|++||.|-+|.|.. |..++|||||.|.+..+|+.|++.|+|.+|+|+.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3457899999999999999999999999999999944 6789999999999999999999999999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 754
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=3e-21 Score=160.11 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=140.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+|||+-.|+..+++-+|.+||+.+|.|.+|.++.+ ..++|.|||+|.+.+++..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 45688999999999999999999999999999999654 5789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.............. .+ ..-..+-..|||+||...+++++|+.+|+.||.|..|.++.+.
T Consensus 256 Eaeknr~a~~s~a~---~~------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPAL---QG------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccc---cc------------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 54322211111000 00 0001112339999999999999999999999999999999886
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+ ||+||+|.+.++|..|+++|||.++. |+.|+|....
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v~ 356 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVVT 356 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEee
Confidence 33 69999999999999999999998888 8888875543
No 42
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.82 E-value=1.3e-20 Score=149.96 Aligned_cols=182 Identities=17% Similarity=0.131 Sum_probs=119.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.....|.|.||.+++|.++|++||..+|.|.++.|+.+ +.....|||.|.|.+.+..|.. |.++.|-++.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 33458999999999999999999999999999999653 2345789999999999999999 6666666666666
Q ss_pred EecCCC-CCCCC---CCCCCCCCCCCC-CCCCCCCCCCCCCCCC------CCCCC----------CCcceEEEeCCCCCC
Q 024220 78 ELAHGG-SGRGP---SSSDRRGGYGGG-GAGGAGGAGAGAGAGR------FGISR----------HSEYRVIVRGLPSSA 136 (270)
Q Consensus 78 ~~~~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~----------~~~~~l~v~~l~~~~ 136 (270)
.+.... .+... ...+.....+.. ++|-.++.......+. ..++- ....+++|++|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 554332 11110 001111000100 0111111111000000 00000 112479999999999
Q ss_pred CHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccc
Q 024220 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
...++.+.|..+|.|...++......-+|.++|........|+. ++|..+
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 99999999999999999888777666688899988777777766 555554
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=2.1e-18 Score=138.32 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=144.1
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 ~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++.|.|.||... +|++.|..+|.-||+|..|+|.... +-.|+|+|.+...|+.|++.|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999765 8999999999999999999997543 3679999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcE
Q 024220 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~ 164 (270)
-..+.......++........-..-.-++...+....++..++.+.|+|.++++++++..|..-|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 44333322222211111110000001111222233335667999999999999999999999998776655555554459
Q ss_pred EEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.+++.++|..|+..++...+. ++..++|.+++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lg---en~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLG---ENHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCC---CCceEEEEeec
Confidence 999999999999999999999887 35578887764
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.80 E-value=1.6e-18 Score=126.92 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....|.|.||.+.++.++|..+|++||.|-+|.|+.+..+ |||||.|....+|+.|++.|+|..++ ++.|+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRELR 86 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cceee
Confidence 34578999999999999999999999999999999999765 69999999999999999999999999 99998
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..++
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 87765
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.2e-19 Score=121.31 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++||||+||+.-+++|+|.+||+.+|+|..|.| ..+..+.|||||+|.+.++|..||..++|..|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999999998 345567899999999999999999999999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 654
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.8e-17 Score=136.16 Aligned_cols=167 Identities=22% Similarity=0.242 Sum_probs=128.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.....|.+.+||.++|++||.++|+.|+ |..+.+..+ +++.|-|||+|.++|++++|++ .+-..+..+-|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788999999999999999999995 888888654 8999999999999999999999 898999999999987765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEeeC--
Q 024220 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD-- 159 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~-- 159 (270)
.+......... .........|-+.+||+.++++||.++|+-.--|.. +.+..+
T Consensus 86 ~e~d~~~~~~g------------------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 86 AEADWVMRPGG------------------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred ccccccccCCC------------------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 53211111000 000123468999999999999999999998765554 333333
Q ss_pred -CCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 160 -SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 160 -~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+.+|-|||.|++.+.|++|+. -|...|. .++|.|-.+
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~-rhre~iG----hRYIEvF~S 179 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALG-RHRENIG----HRYIEVFRS 179 (510)
T ss_pred CCcccceEEEecCHHHHHHHHH-HHHHhhc----cceEEeehh
Confidence 445799999999999999998 4555665 677766443
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=3.1e-17 Score=126.60 Aligned_cols=82 Identities=33% Similarity=0.587 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
++|-+||||+-|++++++..|+..|+.||+|+.|.|+ .+++++|||||+|.++.+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 5788999999999999999999999999999999995 4689999999999999999999999999999999999998
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
-....
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 77653
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.76 E-value=7.9e-17 Score=130.44 Aligned_cols=183 Identities=26% Similarity=0.398 Sum_probs=132.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.+||+|||+++...+|+.||. ..|+|..|.+..+ ++++|+|.|||.++|.+++|++.||.+.+.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999997 5789999999664 7899999999999999999999999999999999998876
Q ss_pred CCCCCC--CCCCCCCC----------CCCCCCCCC--CCCCC----------------CCCCC---------------C-
Q 024220 82 GGSGRG--PSSSDRRG----------GYGGGGAGG--AGGAG----------------AGAGA---------------G- 115 (270)
Q Consensus 82 ~~~~~~--~~~~~~~~----------~~~~~~~~~--~~~~~----------------~~~~~---------------~- 115 (270)
...... .....-.. ++.....+. ++... ..... .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 532111 10000000 000000000 00000 00000 0
Q ss_pred ----CCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccc
Q 024220 116 ----RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 116 ----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
...-..+...++||.||.+.+....|.+.|.-.|.|..+.+-.++.+ |++.++|..+-+|-+||..+++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 00011233458999999999999999999999999999888777654 6999999999999999999987543
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.75 E-value=8e-18 Score=130.26 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 6899999999999999999999999999999998877778999999999999999997 9999999999999998755
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=5.2e-17 Score=127.84 Aligned_cols=195 Identities=19% Similarity=0.188 Sum_probs=138.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEE--------EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
-++.|||.|||.++|.+++.++|+.||-|.. |+|.. .|..+|-|+|.|-..+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4677999999999999999999999997743 55543 4788999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCCCcceEEEeCCCC----CCC-------HHH
Q 024220 75 LRVELAHGGSGRGPSSSDRRG--GYGGGGAGGAGGAGAGAGAG-RFGISRHSEYRVIVRGLPS----SAS-------WQD 140 (270)
Q Consensus 75 l~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~~l~~----~~~-------~~~ 140 (270)
|+|+.|+-.........-... +.....--....-..+-.+. .........++|.+.|+-. ..+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999988643211110000000 00000000000000000000 0112233457889988742 222 356
Q ss_pred HHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|.+.+.+||.|..|.+....+.|.+.|.|.+.++|..||+.|+|+.+. ++.|....+.+
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCC
Confidence 778899999999999998888899999999999999999999999999 88888776664
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=4.2e-18 Score=108.95 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||..+|+++|.++|++||.|..+.+.. ++..+++|||+|.+.++|.+|++.|||..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467789999999999999999999999999999885
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=2.3e-17 Score=143.26 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=101.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++|||+||+..+++++|+++|+.| |.|+.|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE
Q 024220 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF 153 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~ 153 (270)
....... .+..+.++ .+...................++++.|+++..+++.+.++|...|.|..
T Consensus 307 ~~~~~~~------~~~rg~gg-~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 307 VDKKSYV------RYTRGTGG-RGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred CCccccc------ccccccCC-CcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 5322110 00000000 0000000000011122335678999999999999999999999987643
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=6.8e-17 Score=133.51 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|++||+|+.+.|+. ++.+++||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999954 56788999999999999999999999999865 7899999
Q ss_pred cCCCCC
Q 024220 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886533
No 54
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=9.2e-17 Score=137.32 Aligned_cols=191 Identities=22% Similarity=0.288 Sum_probs=138.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
..+.|+|+|||..+..++|..+|..||.|..+.|... -..|+|+|.++.+|.+|+..|....+...+|.+.|+....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4578999999999999999999999999999966522 2248999999999999999999999999999998886442
Q ss_pred CCCCCCCCCCC--CCCC---CC-------CCCCCCCCC--CCCCCCCCCCC-CCcceEEEeCCCCCCCHHHHHHHHHhcC
Q 024220 85 GRGPSSSDRRG--GYGG---GG-------AGGAGGAGA--GAGAGRFGISR-HSEYRVIVRGLPSSASWQDLKDHMRKAG 149 (270)
Q Consensus 85 ~~~~~~~~~~~--~~~~---~~-------~~~~~~~~~--~~~~~~~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~g 149 (270)
........... .... .. .+....... ........... ...+.|||.||++.++.++|..+|...|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 22111000000 0000 00 000000000 00000000011 1223399999999999999999999999
Q ss_pred CceEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 150 DVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 150 ~v~~~~~~~~~~~-------g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|..+.|..-+.. |||||+|.++++|+.|+..|+|+.++ |..|.+..+.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 9999988766544 89999999999999999999999999 9999988887
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.73 E-value=5e-17 Score=123.78 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
....+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |||..|.+++|.|..+...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 456899999999999999999999999999999999888888999999999999999997 9999999999999987755
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=106.07 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.++.|||.|||+++|.|++.++|..||+|..|.|=.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45788999999999999999999999999999999666677999999999999999999999999999999999987754
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.9e-17 Score=120.84 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|-|.||+.++++++|++||..||.|..+.| ..+|.++|||||.|.+.++|++||..|||.=++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 57889999999999999999999999999999999 457899999999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=1.7e-16 Score=101.34 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 45789999999999999999999999999999884
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.6e-16 Score=132.50 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=131.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.|||++||..++++++.++...||++..+.+.. ++.++||||.+|.++.....|++.|||+.+++++|.|+.+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999998854 46899999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCC--CCCC-CH-------HHHHHHHHhcCCc
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGL--PSSA-SW-------QDLKDHMRKAGDV 151 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l--~~~~-~~-------~~l~~~f~~~g~v 151 (270)
........+...... ...+. ..-.......+...|.+.|+ |... .+ ++++..|.+||.|
T Consensus 368 ~g~~~~~~~~~~~~~--~~~~i---------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v 436 (500)
T KOG0120|consen 368 VGASNANVNFNISQS--QVPGI---------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAV 436 (500)
T ss_pred ccchhccccCCcccc--ccccc---------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCce
Confidence 653333222220000 00000 00000111222333333332 1111 11 3467788899999
Q ss_pred eEEEEeeC-CC------CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 152 CFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~-~~------~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..|++..+ .. .|..||+|.+.++++.|.++|+|.++. ++.+...+..
T Consensus 437 ~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 437 RSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred eEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 99999888 22 269999999999999999999999999 7777666554
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.1e-17 Score=120.09 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++..|||+|||+..|+.||.-+|++||+|.+|.|+. ||+++||||+.|++..+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4677899999999999999999999999999999954 6899999999999999999999999999999999999988
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 7663
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.66 E-value=2.1e-16 Score=126.92 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=136.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc--cccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~~ 80 (270)
..+++.|+++|||.+++++||.+++.+||.|..+.+..- +..|||+|+++++|...+..+... .+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG---knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG---KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc---chhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 468999999999999999999999999999999988643 458999999999999977755553 357999999997
Q ss_pred CCCCCCCCCCCCCCCC---CCC---CCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEE
Q 024220 81 HGGSGRGPSSSDRRGG---YGG---GGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 154 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 154 (270)
....-..........+ +.. .....-.-.+.+...+ ......+-..++|.++-+.++-+.|.++|++||.|..+
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 6442222221111000 000 0000000000000011 11222234678899999999999999999999999988
Q ss_pred EEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 155 EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 155 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
......++-.|+|+|.+.+.|+.|...|+|..|.+.++. +++++++
T Consensus 181 iTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCt--LrId~Sk 226 (492)
T KOG1190|consen 181 ITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCT--LRIDFSK 226 (492)
T ss_pred EEEecccchhhhhhccchhhHHHHHHhccCCcccCceeE--EEeehhh
Confidence 776665555799999999999999999999999865444 4444443
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.3e-14 Score=105.28 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=73.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|++..+. ++
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr 104 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GR 104 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3344567999999999999999999999999999999988764 369999999999999999999999998 89
Q ss_pred ceeeecCCCCC
Q 024220 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|+|+.+...+
T Consensus 105 ~l~V~~a~~~~ 115 (144)
T PLN03134 105 HIRVNPANDRP 115 (144)
T ss_pred EEEEEeCCcCC
Confidence 99999886543
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=7.7e-16 Score=120.47 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-+.|+|.|||+..-+-||..+|.+||.|.+|.|+.. ..+||||||+|++++||++|-+.|||..|.|++|.|..+...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 3478999999999999999999999999999999654 578999999999999999999999999999999999988654
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=9.3e-15 Score=119.19 Aligned_cols=144 Identities=26% Similarity=0.442 Sum_probs=109.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++|||+|||..+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999854 468999999999999999999999999999999999999754
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
................ ................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFA------------KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhh------------ccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1111111000000000 000111122334567899999999999999999999999997766655543
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.63 E-value=2.9e-15 Score=95.88 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+|+|+|||..+++++|.++|.+||+|..+.+..+ +.++++|||+|.+.++|..|+..|++..|.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999999873
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.63 E-value=1.3e-13 Score=109.95 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCC--CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc--cCeeEEEEe
Q 024220 4 RFSRTIYVGNLPS--DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~--~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~ 79 (270)
.++..|.++=|.+ .+|.+.|.++...+|+|..|.|... .--.|+|||++.+.|++|.+.|||..| +-..|+|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 5667777766655 5999999999999999999999543 234699999999999999999999888 457899999
Q ss_pred cCCCCCC-----CCCCCCCCC-------------------CCCCC--C--CCCCCCCCC-----C--CCCC---------
Q 024220 80 AHGGSGR-----GPSSSDRRG-------------------GYGGG--G--AGGAGGAGA-----G--AGAG--------- 115 (270)
Q Consensus 80 ~~~~~~~-----~~~~~~~~~-------------------~~~~~--~--~~~~~~~~~-----~--~~~~--------- 115 (270)
+++.... .+.|.-... .+.+. . .|+..+... + +.+.
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9865320 111100000 00000 0 000000000 0 0000
Q ss_pred ---CCCCCCCCcceEEEeCCC-CCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcc
Q 024220 116 ---RFGISRHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 116 ---~~~~~~~~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.......+++.+.|.+|. ..++-+.|..+|..||.|+.|++++.+.+ .|.|++.+....+.|+..||+..+-
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lf--- 351 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLF--- 351 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccc---
Confidence 011233457899999997 46688889999999999999999998764 9999999999999999999999887
Q ss_pred cccceeeecCC
Q 024220 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|.+|.+..++
T Consensus 352 -G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 -GGKLNVCVSK 361 (494)
T ss_pred -cceEEEeecc
Confidence 8999888776
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.61 E-value=2.7e-15 Score=123.53 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH--HHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
....+||||||++.+++++|..+|..||.|..|.|+.... +|||||+|.+. .++.+||..|||..|.|+.|+|..++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3457899999999999999999999999999999975433 99999999987 78999999999999999999999987
Q ss_pred C
Q 024220 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=113.93 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.|||++|+..+..|.|++.|++||+|++..++ .+++++|||||+|.+.++|.+|++ -.+-.|+|++..|.++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 679999999999999999999999999999884 467999999999999999999999 556889999999988764
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.61 E-value=8.5e-14 Score=113.12 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=66.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...++|+|.|||.+.||+.|++-|..||.|..+.|+..... .+.|.|.++++|+.|+..|+|..+. ++.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 45678999999999999999999999999999998654333 5699999999999999999999998 99998875
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.9e-15 Score=103.30 Aligned_cols=78 Identities=26% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|||+++...+|+++|.+.|..||+|+.|.|. .++-.+|||+|+|++.+.|++|+..|||..|.|++|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 3579999999999999999999999999999994 4677899999999999999999999999999999999999875
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 5
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.4e-13 Score=109.57 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..|||..+.++.+++||..+|+.||+|..|.+.. ....+||+||+|.+..+-..|+..||=+.|+|+.|+|.-+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999954 3578999999999999999999999999999999999877543
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=120.07 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.|.+.|||..|++.+|++||.-+|+.||.|..|.++. ++.+..||||+|.+.++|++|.-.|++..|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 5788999999999999999999999999999999954 6789999999999999999999999999999999999998
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8663
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.7e-14 Score=108.40 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+=++|||.-|++++++..|+..|+.||+|..|.++.+..+ |||||+|++..++..|.++.+|.+|+ ++.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 34589999999999999999999999999999999988544 69999999999999999999999999 88888
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 87765
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=3.9e-13 Score=107.24 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
-+.+.++|-+|... ++.+.|.++|..||.|+.|+++.+. .|.|.|++.++.+.+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46789999999776 8899999999999999999998764 58899999999999999999999999999999999886
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEee
Q 024220 83 GSGRGPS---SSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~ 158 (270)
.--.... ..+....+..........-..+.++.+ .....+.+.|..-|.|..+||+.|.++|..-+. ...+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsK-NrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASK-NRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhc-ccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 5221111 111111111111111111111122222 223356789999999999999999999987663 45566665
Q ss_pred CCCC--cEEEEEeCChhhHHHHHHhcCCccccCccc
Q 024220 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 159 ~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.+.. -.+.++|++.++|.+|+..+|...+.+...
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~g 477 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNG 477 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCC
Confidence 5433 389999999999999999999999984443
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.56 E-value=3.2e-14 Score=86.40 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.1
Q ss_pred HHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 23 L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|++.|||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 699999999999999999999999999999999985
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.4e-15 Score=109.53 Aligned_cols=84 Identities=32% Similarity=0.513 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||++|...+++..|...|-.||.|.+|.+.. +++.+|||||+|...|+|..||..||+..|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 024220 81 HGGSGRG 87 (270)
Q Consensus 81 ~~~~~~~ 87 (270)
++.....
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9874433
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.55 E-value=5.8e-14 Score=90.28 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC--CCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+|+|+|||..+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4689999999999999999999999999999999864
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.54 E-value=3.4e-14 Score=90.55 Aligned_cols=68 Identities=41% Similarity=0.732 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 11 VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|+|||..+++++|.++|.+||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999855 35678999999999999999999999999999999873
No 79
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=8.4e-14 Score=88.80 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=59.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|++|++.|+|..+. +..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCc
Confidence 79999999999999999999999999999988622 269999999999999999999999988 6655
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=7.4e-14 Score=117.18 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|||||||+++++++|..+|+..|.|.++++.. +|.++||||++|.++++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 5789999999999999999999999999999999999998765
Q ss_pred CC
Q 024220 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=94.22 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=73.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.....++.|||+++...+++++|.+.|..||+|..+++..+..+ |||+|+|++.++|+.|+..+||..+. +.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q 142 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQ 142 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CC
Confidence 34456899999999999999999999999999999999999877 49999999999999999999999999 88
Q ss_pred ceeeecCC
Q 024220 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|++.-
T Consensus 143 ~v~VDw~F 150 (170)
T KOG0130|consen 143 NVSVDWCF 150 (170)
T ss_pred ceeEEEEE
Confidence 88888765
No 82
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.9e-13 Score=96.67 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+.|||+|||.++-+.+|+++|.+||.|..|++...+. ..||||+|+++.+|+.||..-+|..++ ++.++|++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEec
Confidence 347999999999999999999999999999998876554 359999999999999999999999998 999999999
Q ss_pred CCCC
Q 024220 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
+.-+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8543
No 83
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=7.2e-14 Score=107.87 Aligned_cols=94 Identities=33% Similarity=0.582 Sum_probs=83.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|+|+||.+.++.++|++.|.+||+|++|.|. ++|+||.|...++|..|+..|+|.+|.|++|+|+.+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 468899999999999999999999999999999998 789999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 024220 84 SGRGPSSSDRRGGYGGGGA 102 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (270)
...++...+..+++..+..
T Consensus 151 lrtapgmgDq~~cyrcGke 169 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCGKE 169 (346)
T ss_pred cccCCCCCCHHHheecccc
Confidence 7777666666666655443
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.7e-13 Score=107.56 Aligned_cols=78 Identities=26% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.....+|+|.|+|+..-+.||+.+|.+||+|.+|+|+.+..+ ||+||+|++++||++|-++|||..+. |++|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEE
Confidence 345679999999999999999999999999999999988765 79999999999999999999999998 999999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 169 n~AT 172 (376)
T KOG0125|consen 169 NNAT 172 (376)
T ss_pred eccc
Confidence 8765
No 85
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=7.8e-14 Score=111.50 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=124.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----cceEEE-EEec-CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKY----GRILDI-ELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~----G~v~~~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+.-.|.+.+||+++++.|+.++|..- |.++.| .+.. +++..|-|||.|..+++|+.|+. -|...|+-+.|.+-
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34568889999999999999999732 123344 3444 78899999999999999999998 56666666666553
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC-ceE--EE
Q 024220 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCF--AE 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~--~~ 155 (270)
.+...+-...-...... +..++. .....+..+....++.....+|.+.+||+..+.++|.++|..|.. |.. |+
T Consensus 239 RSTaaEvqqvlnr~~s~---pLi~~~-~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSE---PLIPGL-TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHhHHHHHHHHHhhccc---cccCCC-CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 32211000000000000 000000 001111123344445555789999999999999999999998863 333 66
Q ss_pred EeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 156 VSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 156 ~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+..+.. .|.|||+|.+.++|..|..+.+++... .++|.|-..
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~ 359 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPC 359 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeec
Confidence 665543 479999999999999999988888776 777776543
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=111.44 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||+||+.++|+|.|.++|++||.|+.|+.. +-||||-|.+-++|.+||+.+||..|+|..|.|.++++....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 579999999999999999999999999999877 559999999999999999999999999999999999987544
Q ss_pred C
Q 024220 87 G 87 (270)
Q Consensus 87 ~ 87 (270)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 87
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=8.2e-13 Score=102.64 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=68.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+|||+|||+.+++++|+++|+.||.|..+.++.+.. .|||||+|.++++|+.|+. |+|..+. ++.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 36999999999999999999999999999999988863 4799999999999999995 9999998 9999998875
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=7.3e-13 Score=89.96 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...++|||+||+.-+++++|-++|+++|+|..|.+-.++.+ |||||+|.+.++|+.|+..++|..++ .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 35689999999999999999999999999998877666544 79999999999999999999999999 99999
Q ss_pred eecCCC
Q 024220 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
++++.+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 998874
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=83.12 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cccceEEEE-Eec---C--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 20 ~~~L~~~F~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+++|.++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 422 3 678999999999999999999999999999999986
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.4e-13 Score=101.92 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+.+.|+|||-.||.+..+.||.++|-.||.|++.++.. |+.+++|+||.|.++.+|+.||..|||+.|+=++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46789999999999999999999999999999998844 578999999999999999999999999999999999998
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
.+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 7766
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.5e-12 Score=82.47 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+......|||.|||..+|.++.-++|.+||.|..+.+-..+.+ |.|||.|++..+|.+|+++|.|..+. ++++.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEE
Confidence 34455689999999999999999999999999999998877765 79999999999999999999999998 88888
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|-+..
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 76654
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.2e-11 Score=93.42 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......++|-|.||+.++++.+|+++|.+||.|..+.+..++.+ |||||.|.+.++|++||..|+|.-++ ..
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~L 259 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NL 259 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eE
Confidence 34556789999999999999999999999999999999999877 59999999999999999999999888 88
Q ss_pred ceeeecCCC
Q 024220 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.++|++++.
T Consensus 260 ILrvEwskP 268 (270)
T KOG0122|consen 260 ILRVEWSKP 268 (270)
T ss_pred EEEEEecCC
Confidence 888888764
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=5.9e-13 Score=98.80 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=111.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+..+||||+|+...++++-|.++|-+.|+|..+.|.. +++.+ ||||.|.++-++.-|++.+||..+.+..|+|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5568999999999999999999999999999999954 45556 99999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .-|...++++.+...|+..|.+..+.+..+..
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 2200 01344567777778888888888877766654
Q ss_pred C---cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ~---g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+ +++|+++--......++..+.+....
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 2 48888887777777777777666554
No 94
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=3.4e-12 Score=81.29 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=58.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+. ++.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEc
Confidence 79999999999999999999999999999998864 369999999999999999999988888 6655
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=6.3e-12 Score=96.17 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+++|||+||++.+|+++|+++|+.||+|..|+++.+... ++|||+|++++.|+.|+. |+|..|. +..|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC----CceEEEEeC
Confidence 4589999999999999999999999999999999988654 599999999999999995 9999998 888888876
Q ss_pred CC
Q 024220 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=4.7e-12 Score=104.72 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCCh--hhHHHHHHhcCCccccCcccccceeeec
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+.+|||+||++.+++++|..+|..||.|..|+|++....|||||+|.+. .++.+||..|+|..+. |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 45799999999999999999999999999999999777678999999987 6899999999999988 99999998
Q ss_pred CC
Q 024220 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 86
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.33 E-value=3.6e-12 Score=110.51 Aligned_cols=76 Identities=28% Similarity=0.518 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++||||++|+..+++.||.++|+.||+|.+|.|+.. +++|||.+..-++|.+|+..|++..+.++.|+|.|+..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 5799999999999999999999999999999999754 899999999999999999999999999999999999876
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=7.5e-12 Score=105.87 Aligned_cols=179 Identities=22% Similarity=0.338 Sum_probs=132.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----------c-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
...+.++|++||+.++++.+..+|..- | .|..+.+. ..++||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 566789999999999999999999753 2 35555553 347899999999999999999 9999999
Q ss_pred CeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Q 024220 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 151 (270)
|.++++.--............. .. .+...............+.+||++||..+++.++.++...||.+
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~----~~--------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSP----SQ--------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhh----cc--------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 9999886544331111111000 00 00000000112233456799999999999999999999999999
Q ss_pred eEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
....+..+... ||||.+|.++.....|+..|||+.+. +..+.|..+-
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 98888777653 69999999999999999999999998 7777665543
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=6.6e-11 Score=98.69 Aligned_cols=159 Identities=22% Similarity=0.326 Sum_probs=109.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceE-EEEEecC----CCCCc---EEEEEECCHHHHHHHHHhcCCccccCeeE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKIP----PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~-~~~~~~~----~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
.-++.||||+||.++++++|...|..||.+. ++-.+.. ..++| |+|+.|+++.+++.-|..+.- ...++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 3468899999999999999999999999653 2221111 12455 999999999999987766542 33344
Q ss_pred EEEecCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHH-hcCC
Q 024220 76 RVELAHGGSGRGP----SSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAGD 150 (270)
Q Consensus 76 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~ 150 (270)
.++.+.+...... .|......+ ......+-.+..+|||++||..++.++|..+|. .||.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~f----------------v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg 397 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDF----------------VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG 397 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchh----------------hhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc
Confidence 4433333221110 000000000 001123345568999999999999999999998 7999
Q ss_pred ceEEEEeeCC----CCcEEEEEeCChhhHHHHHHh
Q 024220 151 VCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 151 v~~~~~~~~~----~~g~~fv~f~~~~~a~~a~~~ 181 (270)
|..+-|-.|+ +.|-|-|+|.+...-.+||.+
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9999998884 336899999999999999874
No 100
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=2.2e-12 Score=113.56 Aligned_cols=158 Identities=21% Similarity=0.364 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||++||+..+++.+|+..|..+|.|..|.|..+ +....||||.|.+.+.+-.|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 45789999999999999999999999999999999544 3446799999999999999999999988866666665543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.. ......+++++|+..+....|...|..||.|..|.+-....
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 21 22346899999999999999999999999999877766543
Q ss_pred CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
||+|.|++...|+.|+..|.|..+++. .+.++|.++.
T Consensus 493 --yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 493 --YAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred --ceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 999999999999999999999999854 4447777665
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=2.9e-11 Score=76.99 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=61.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC--CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+|+|.|||..+++++|+++|..||.|..+.+..+. ..++|||+|.+.++|+.|+..+++..+. +..+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 48999999999999999999999999999888765 3369999999999999999999998887 666654
No 102
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.25 E-value=3.1e-11 Score=89.15 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-cceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
....++|..||.-+.+.+|..+|.+| |.|..+.+ ..||+++|||||+|++++.|.-|-+.||+..|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44568999999999999999999998 78888888 568999999999999999999999999999999999999886
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=2.5e-11 Score=87.81 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEE----EEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD----IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~----~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-+..|||+||.+.+.+..|+.+|+.||.+.. .....++++++||||.|.+.|.+.+|+..+||..++.++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3478999999999999999999999997765 122346789999999999999999999999999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 175 ~k~ 177 (203)
T KOG0131|consen 175 FKK 177 (203)
T ss_pred Eec
Confidence 765
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-10 Score=97.15 Aligned_cols=77 Identities=35% Similarity=0.629 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+|||+|||+++++++|.++|..||+|+...|.. .++..+||||+|.+.++++.|++ -+-..|++++|.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 35699999999999999999999999999988822 24444999999999999999999 678999999999998776
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.4e-11 Score=95.71 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=74.5
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc----EEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+...++.+.|||..|.+.++.++|.-+|+.||.|..|.++++..+| ||||+|++.+++++|.-+|++..|+ .
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----D 308 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----D 308 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----c
Confidence 3455678999999999999999999999999999999999999886 9999999999999999999999998 8
Q ss_pred cceeeecCC
Q 024220 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|+++.
T Consensus 309 rRIHVDFSQ 317 (479)
T KOG0415|consen 309 RRIHVDFSQ 317 (479)
T ss_pred ceEEeehhh
Confidence 999887654
No 106
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.21 E-value=5.7e-10 Score=86.59 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...|+|.|||..++++||++||..||.++.+.++. .+.+.|.|-|.|...++|..||+.|||+.++|++|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888888855 4788999999999999999999999999999999999887655
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.21 E-value=3.4e-10 Score=93.92 Aligned_cols=181 Identities=26% Similarity=0.333 Sum_probs=115.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+...|-+.+||+.||++||.++|+..-.|.. |.+.. -+.+.|-|||+|++++.|+.|+. -|...|+.+-|.|-.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999998765555 33332 35678999999999999999999 77788888989986653
Q ss_pred CCC---------CCC--CCCCCCCCCCCC------C-------------CCCCCC------------CCCC---------
Q 024220 82 GGS---------GRG--PSSSDRRGGYGG------G-------------GAGGAG------------GAGA--------- 110 (270)
Q Consensus 82 ~~~---------~~~--~~~~~~~~~~~~------~-------------~~~~~~------------~~~~--------- 110 (270)
-.. ... +.........++ + ..+..+ ..+.
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 110 000 000000000000 0 000000 0000
Q ss_pred ----C---CCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC---CCcEEEEEeCChhhHHHHHH
Q 024220 111 ----G---AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS---EGTYGVVDYTNPEDMKYAIR 180 (270)
Q Consensus 111 ----~---~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~g~~fv~f~~~~~a~~a~~ 180 (270)
+ +..+....-...+..+...+||+..++.++..+|+..-.+ .|+|.... .+|-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 0000001111223678889999999999999999886555 45555544 34799999999999999987
Q ss_pred hcCCcccc
Q 024220 181 KLDDTEFR 188 (270)
Q Consensus 181 ~l~g~~~~ 188 (270)
+ ++..+.
T Consensus 340 k-d~anm~ 346 (510)
T KOG4211|consen 340 K-DGANMG 346 (510)
T ss_pred c-CCcccC
Confidence 3 444444
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=8.9e-11 Score=93.16 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHh-cCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG-RDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~g~~l~v~~~~ 81 (270)
+....+|||++|...+++.+|+..|.+||+|..|.+..- +++|||+|.+-++|+.|.+. +|...|.|.+|+|.|+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 345689999999999999999999999999999999644 67999999999999998754 56677899999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 302 ~~ 303 (377)
T KOG0153|consen 302 PK 303 (377)
T ss_pred Cc
Confidence 73
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=2.9e-10 Score=72.72 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=62.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|++.+++..+. +..+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 489999999999999999999999999999988764 479999999999999999999999877 7777654
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.9e-10 Score=72.91 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=58.6
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
|.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999888765 469999999999999999999998887 666654
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.2e-10 Score=70.44 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=49.6
Q ss_pred HHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..+. ++.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999998876 569999999999999999999999998 888988753
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=9.4e-11 Score=98.59 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=100.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+|+|-|||..++.++|.++|+.||+|..|.. +....+.+||+|.|..+|+.|++.|++..|.|+.|+......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~- 149 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR- 149 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc-
Confidence 46789999999999999999999999999999655 445589999999999999999999999999999998211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g 163 (270)
+.........-+.. .++........+.+ ...+++- |++.....-++.++..+|.+..-....-. .
T Consensus 150 --~~~~~~~~~~~~~~-------~~~p~a~s~pgg~~---~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~~~~~~~~--h 214 (549)
T KOG4660|consen 150 --RAMGLQSGTSFLNH-------FGSPLANSPPGGWP---RGQLFGM-LSPTRSSILLEHISSVDGSSPGRETPLLN--H 214 (549)
T ss_pred --ccchhcccchhhhh-------ccchhhcCCCCCCc---CCcceee-eccchhhhhhhcchhccCccccccccchh--h
Confidence 00000000000000 00000000000001 1223332 88887777677777888876651111111 1
Q ss_pred EEEEEeCChhhHHHHHH
Q 024220 164 YGVVDYTNPEDMKYAIR 180 (270)
Q Consensus 164 ~~fv~f~~~~~a~~a~~ 180 (270)
.-|++|.+..++..+..
T Consensus 215 q~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEP 231 (549)
T ss_pred hhhhhhccccchhhccc
Confidence 56788888888755544
No 113
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=9e-12 Score=89.96 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.-|||+|||+.+|+.||.-+|++||+|..|.++++..+ ||||+-|++.....-|+..|||..+. ++.|+|+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEeee
Confidence 57999999999999999999999999999999999877 59999999999999999999999999 99999876
Q ss_pred CC
Q 024220 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 114
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=2.6e-11 Score=98.47 Aligned_cols=148 Identities=24% Similarity=0.387 Sum_probs=118.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-ccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~~~~ 83 (270)
..+|++||.+.+++.||..+|... +--..+.+. .||+||.+.+...|.+|++.++| ..+.|+.+.|.++.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 368999999999999999999754 211222222 68999999999999999999999 6689999999988766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEE-eeCCCC
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV-SRDSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~ 162 (270)
..+ .+.+-|.|+|+...|+.|..+...||.+..|.. +.+..+
T Consensus 77 kqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 KQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred HHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 222 246789999999999999999999999988764 444444
Q ss_pred cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...-|+|...+.+..|+.+++|..+. ...+.+.+
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e----n~~~k~~Y 153 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE----NQHLKVGY 153 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh----hhhhhccc
Confidence 45668889999999999999999987 44444443
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=6e-10 Score=94.00 Aligned_cols=80 Identities=26% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|+|.+|+..+-..||..||++||.|+..+++. ++..++|+||++.+.++|.++|+.|+...|+|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 457899999999999999999999999999999854 35668999999999999999999999999999999999988
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 653
No 116
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.3e-10 Score=84.87 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=54.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l 182 (270)
.+|||++|+..+..+.|+.+|++||+|+.+.++.|+.+ ||+||+|.+.+.|.+|++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 68999999999999999999999999999999998766 69999999999999999853
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.6e-10 Score=86.02 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=71.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||++|...+++.-|...|-.||.|..|.++.+... ||+||+|+..++|..|+..||+.++- |+.|+|.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirVN 85 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRVN 85 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEEe
Confidence 479999999999999999999999999999999887544 69999999999999999999999998 9999999
Q ss_pred cCCCCC
Q 024220 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
.+...+
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 997543
No 118
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.03 E-value=2.5e-09 Score=71.15 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=64.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccc----CeeEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (270)
+||+|+|||...|.++|.+++.. .|...-+.|.. +..+.|||||.|.++++|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999999974 35666677744 3567899999999999999999999999884 577788
Q ss_pred EecCCC
Q 024220 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=3.4e-11 Score=105.72 Aligned_cols=133 Identities=24% Similarity=0.287 Sum_probs=112.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+++||.||++.+.+.+|...|..+|.+..+.+. ..+..+|+|||+|..+++|.+||....+++++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 345689999999999999999999999988777663 35678999999999999999999954444444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+ ..++|.|+|...|.++++.+|..+|.+..+.++..+
T Consensus 736 --K-----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 736 --K-----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred --h-----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 1 368899999999999999999999999887665544
Q ss_pred ---CCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 161 ---EGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 161 ---~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+.|.++|.|.+..+|..++..+++..+.
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 3479999999999999999888887776
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.01 E-value=8.5e-10 Score=93.01 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+.+||+|+|+++++++|.++|...|.|..++++.|+.+ ||+|++|.+.++|..|++.|+|.++. +++++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 79999999999999999999999999999999998776 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCC
Q 024220 201 YDRSPSRSR 209 (270)
Q Consensus 201 ~~~~~~r~r 209 (270)
+.....+.+
T Consensus 95 ~~~~~~~~~ 103 (435)
T KOG0108|consen 95 ASNRKNAER 103 (435)
T ss_pred ccccchhHH
Confidence 886555443
No 121
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=86.17 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++|..|+..++|..+. ++.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 58999999999999999999999999999998888752 379999999999999999999999998 9999998
Q ss_pred cCC
Q 024220 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 122
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=88.24 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|||++||.++++++|++.|.+||.|..+.++.+ ..+++|+||.|.+++++.+++. +.-+.|.|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 458999999999999999999999999999888654 5789999999999999999999 888999999999999988
Q ss_pred CCCCCC
Q 024220 83 GSGRGP 88 (270)
Q Consensus 83 ~~~~~~ 88 (270)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 755443
No 123
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=1.9e-08 Score=87.10 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..+++|||+||++.++++.|...|..||+|..++|+.. .....+|||.|-+-.+|+.|+..|+|..+.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45688999999999999999999999999999999653 245689999999999999999999999999999999
Q ss_pred EecCCC
Q 024220 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.|++..
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 999644
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1.5e-08 Score=64.27 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHH----hcCCceEEE-EeeCC------CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 138 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+++|+++|. .||.|..+. +..+. ..|++||+|.+.++|..|+..|||..+. ++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888888 999999885 44432 2479999999999999999999999998 777754
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.85 E-value=6.9e-09 Score=83.58 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=129.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCC-ccccCeeEEEEec
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+++|++++...+.+.++..+|..+|.+....+ .....+++++++.|...+.+..|+. +.+ ..+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 3678999999999999989999999997777666 2345679999999999999999999 555 4666666655544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-EeCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
............ .....+..++| |.+|+..++.++|..+|..+|.|..+.+...
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211100000 01111223455 9999999999999999999999999999888
Q ss_pred CCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCCCCCC
Q 024220 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRS 208 (270)
Q Consensus 160 ~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r~ 208 (270)
... ++++|.|.....+..++.. +...+. +..+.+......+...
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKSD 268 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCcccc
Confidence 766 4999999999999999886 676666 7778787776554443
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=7e-08 Score=77.98 Aligned_cols=158 Identities=19% Similarity=0.202 Sum_probs=108.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEE---EEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI---ELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.+..|...+||...++.+|-.+|...-...-. -+...+.-.|.|.|.|.++|.-..|++ -+.+.++++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 567778899999999999999999754222111 112234446889999999999999999 7888899999999755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhc-----C--CceE
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA-----G--DVCF 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g--~v~~ 153 (270)
....-..- . +++......-.+......|.+.+||+++++.++.++|..- | .|..
T Consensus 137 ~ge~f~~i---------a----------gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLKI---------A----------GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheEe---------c----------CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 43311100 0 0000111111222334567788999999999999999621 2 2344
Q ss_pred EEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 024220 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 154 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
|....++.+|.|||.|+.+++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 4444556678999999999999999974
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=4.1e-08 Score=83.17 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+.+|+|.+|...+-.-+|+.+|++||+|+-.+++.+... .|+||++.+.++|.++|..||.+++. ++.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 345679999999999999999999999999999999887654 39999999999999999999999998 8999
Q ss_pred eeecCCC
Q 024220 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|+.++.
T Consensus 478 SVEkaKN 484 (940)
T KOG4661|consen 478 SVEKAKN 484 (940)
T ss_pred eeeeccc
Confidence 8887763
No 128
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=7.5e-09 Score=80.64 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+...|||+|+.+.+|.+++...|..||.|..+.|.. .+.++|||||+|.+.+.++.|+. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777743 35689999999999999999999 9999999999999987
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 654
No 129
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.81 E-value=4.1e-08 Score=62.15 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 7 RTIYVGNLPSDIREYE----VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~----L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..|+|.|||.+..... |.+|+..|| .|..| . .+.|+|.|.+++.|..|...|+|-.+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999877665 667777887 77766 2 4789999999999999999999999999999999985
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 130
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3e-08 Score=75.42 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+||++||+.+.+.+|+.+|..||.+..+.+.. ||+||+|++..+|..|+..+++..+. +-.+.++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 4689999999999999999999999999988777 48999999999999999999999998 4446666555
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.76 E-value=1.9e-07 Score=80.89 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEE-EEEe--cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...|||..||..++..++.++|...-.|++ |.|. .++...+.|||+|.+++++.+|...-+.+.++.+.|+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 468999999999999999999999888888 6663 24567889999999999999999877777788888888554
No 132
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.73 E-value=6.8e-08 Score=72.88 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHH----HHHhcCCceEEEEeeC-CCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+|||.||+..+..++|+. +|++||.|..|..... +-.|-|||.|.+.+.|-.|+..|+|..+- |..+++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 3999999999999999887 9999999999887754 44589999999999999999999999998 8999988
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 8863
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.69 E-value=1.9e-07 Score=80.97 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=122.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.+.+-+.+.+.++...|++++|-.. .|....|.. .+...|.++|+|..+.++++|+. -|.+.+-.+.++|..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45677788999999999999999753 244444422 23337899999999999999998 67777778888887665
Q ss_pred CCCCCCCCCCCCCCC-----CC-CCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE-E
Q 024220 82 GGSGRGPSSSDRRGG-----YG-GGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-A 154 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~ 154 (270)
...-........... .. +...+...+... .......+...+..|||..||..+++.++.+.|.....|++ |
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~--~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVR--PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccC--CCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 432111111000000 00 000000000000 11112345566789999999999999999999998877777 6
Q ss_pred EEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 155 EVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 155 ~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+...+. .+.|||.|..++.+..|...-+...+. .+.|+|..
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 6554433 359999999999888888766655555 56666543
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.65 E-value=2.6e-08 Score=74.69 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=55.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
..||||.||.+++|+++|+++|+.|-....++|...+ ....|||+|++.+.|..||..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 3589999999999999999999999877777775432 356899999999999999999999876
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.61 E-value=1.3e-07 Score=83.01 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=68.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|||++|+..+++.||..+|+.||.|..|.++... ++|||.+....+|++|+.+|.+..+. ...|++.++-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeeecc
Confidence 4699999999999999999999999999999888765 59999999999999999999988887 88898888765
Q ss_pred CC
Q 024220 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
..
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=72.35 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=111.4
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 9 IYVGNLPSDIREYE-V--EDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 9 l~v~nl~~~~t~~~-L--~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++.|+-..+.++- | ...|+.+-.+....+.. .+.-.+++|+.|.....-.++...-++..++-..|++.-..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt-- 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT-- 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc--
Confidence 34555544444443 2 56666665555544533 34567899999998888888877666666665554443211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+.+. ....-...+..||.+.|...++++.|-..|.+|-.....+++++..+
T Consensus 177 -----swedP----------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTg 229 (290)
T KOG0226|consen 177 -----SWEDP----------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTG 229 (290)
T ss_pred -----ccCCc----------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccccc
Confidence 11111 01122234579999999999999999999999998888888888765
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
||+||-|.++.++..|+.+|+|+.++ .+.|.+..
T Consensus 230 KSkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRk 266 (290)
T KOG0226|consen 230 KSKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRK 266 (290)
T ss_pred ccccceeeeecCHHHHHHHHHhhcccccc----cchhHhhh
Confidence 59999999999999999999999998 66665543
No 137
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.53 E-value=2.7e-07 Score=62.96 Aligned_cols=70 Identities=13% Similarity=0.296 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-----ccccCeeEEEEe
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-----YNFDGCRLRVEL 79 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~g~~l~v~~ 79 (270)
+.|+|.+++..++-++|.++|+.||.|..|.+... -..|||.|.++++|+.|+..+.. ..|.+..+++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999988642 45799999999999999986643 356677666654
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.53 E-value=4e-07 Score=70.89 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=66.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...|+|.|||+.++++||+++|..||.+..+-+..+..+ |.|-|.|...++|..|++.++|..++ +..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 378999999999999999999999999988888888776 79999999999999999999998877 77776655
Q ss_pred CC
Q 024220 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 44
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=5.8e-07 Score=71.89 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....-.+|||++|...+++.+|.++|.+||+|..+.+.... ++|||+|.+.+.|+.|.++.-...+- .|.++.+.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVI---NGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeee---cceEEEEE
Confidence 33445799999999999999999999999999999888765 49999999999999998876554433 38889888
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 7654
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.46 E-value=2.3e-07 Score=71.10 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.-.||-+.|...++++.|-..|.+|-.....++ ..+++++||+||-|.++.++..|+..|+|..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34467999999999999999999999876655555 457899999999999999999999999999999999987544
No 141
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=2e-07 Score=69.88 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||.|+...++++-|.++|-..|+|..|.|..+... .||||.|++.....-|++-+||-.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 345689999999999999999999999999999999877655 49999999999999999999998876
No 142
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.39 E-value=2e-08 Score=81.26 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+||+|++|+..+...++.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 7899999999999999999999999998887743 2335688899999999999999 7877765
No 143
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=70.56 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEE--------EEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
..+-+|||.+||..+++++|.++|.+||.|.. |.| +.|+.+++-|.|.|.++..|+.|+.-+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45679999999999999999999999997743 333 4567899999999999999999999999999999
Q ss_pred eeEEEEecCCCC
Q 024220 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
.+|+|-++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887654
No 144
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=64.25 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=58.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhc-CCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....+||..+|..+.+.++..+|.++ |.|..+.+.++..+ |||||+|++++.|.-|.+.||+..+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34578999999999999999999998 67777777677665 59999999999999999999999987
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=6.9e-06 Score=54.77 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=62.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|.|.|+|...+.++|.+++... |....+.++.|-.+ |||||.|.+++.|.+-.+.++|..+..-...+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988663 56667777776543 799999999999999999999999874444555555
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5543
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.8e-05 Score=66.89 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC----CCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD----SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....|||.|||.++++++|+++|..||.|....|... ....||||+|.+...++.|+.+- -..++ ++++.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEE
Confidence 33456999999999999999999999999988666543 22259999999999999999865 44444 78888
Q ss_pred eecCCC
Q 024220 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|+..+.
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 877653
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.34 E-value=1.4e-06 Score=75.84 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=69.6
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhcCCccc
Q 024220 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 115 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
+.+....+...+|||+||++.++++.|...|..||+|..++++.... ..|+||.|.+..+|+.|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 34444455678999999999999999999999999999999987643 25999999999999999999999988
Q ss_pred cCcccccceeeecC
Q 024220 188 RNPWARGRITVKRY 201 (270)
Q Consensus 188 ~~~~~~~~i~v~~~ 201 (270)
. ...+++.+.
T Consensus 245 ~----~~e~K~gWg 254 (877)
T KOG0151|consen 245 M----EYEMKLGWG 254 (877)
T ss_pred e----eeeeeeccc
Confidence 7 556655554
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.33 E-value=5.4e-07 Score=69.30 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=52.4
Q ss_pred HHHHHHhh-cccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 21 YEVEDLFY-KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~-~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+||...|. +||+|+.+.+-. .....|.+||.|..+++|++|++.||+..|.|++|..+++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555556 899999998732 2355899999999999999999999999999999999987543
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.2e-06 Score=74.30 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=61.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|+|.|||..++.++|..+|+.||+|..+..-.... +.+||+|.+..+|+.|++.|++.++. ++.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA----GKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh----hhhhc
Confidence 4457999999999999999999999999998865444333 59999999999999999999999998 55554
No 150
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.24 E-value=6.2e-06 Score=66.13 Aligned_cols=76 Identities=28% Similarity=0.450 Sum_probs=67.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
....|||.|||.++|.+++.++|+++|-|.. |++..+..+ |-|++.|-..+++.-|++.|++..+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r--- 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR--- 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc---
Confidence 3457999999999999999999999997643 777777665 68999999999999999999999999
Q ss_pred cccceeeecCC
Q 024220 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|..++|..++
T Consensus 210 -g~~~rVerAk 219 (382)
T KOG1548|consen 210 -GKKLRVERAK 219 (382)
T ss_pred -CcEEEEehhh
Confidence 9999998876
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=1.1e-05 Score=51.23 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHHhcC-CceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..|+|.|||...+... |++++..+| .|..+ . ++.|.|.|.+.+.|..|.+.|+|..+- |.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4799999999998876 466777776 66554 2 248999999999999999999999998 9999998
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.21 E-value=4.5e-06 Score=49.29 Aligned_cols=53 Identities=32% Similarity=0.607 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.+.++...+ +|...|..||+|.++.+. ......||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 467899999988775 455588899999998885 23678999999999999995
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.18 E-value=8.3e-07 Score=68.15 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-----------CCCC----cEEEEEECCHHHHHHHHHhcCCccc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----------PRPP----CYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.-.||+++||+.+...-|+++|++||.|-.|.|... +.+. .-|+|+|.+-..|......|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999999999332 1112 2478999999999999999999999
Q ss_pred cCee
Q 024220 71 DGCR 74 (270)
Q Consensus 71 ~g~~ 74 (270)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9876
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.15 E-value=3.3e-06 Score=68.29 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=70.7
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~-v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++.++| |+||+..++.++|...|..+|.|..+.+.. ++.++|||||.|.....+..|+.. +...+++.++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4566677 999999999999999999999999999943 578899999999999999999996 88999999999998
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
..+.
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 8765
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=5.5e-06 Score=56.55 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=40.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
+.|.|.+++..++.++|++.|..||.|.+|.+..+.. .|||.|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 6789999999999999999999999999999888654 8999999999999999877554
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.10 E-value=1.1e-05 Score=64.53 Aligned_cols=75 Identities=23% Similarity=0.435 Sum_probs=60.6
Q ss_pred CeEEEcCCCCCCCHHH------HHHHhhcccceEEEEEec-CC--C-CCc-E-EEEEECCHHHHHHHHHhcCCccccCee
Q 024220 7 RTIYVGNLPSDIREYE------VEDLFYKYGRILDIELKI-PP--R-PPC-Y-CFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~------L~~~F~~~G~v~~~~~~~-~~--~-~~g-~-afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.-+||-+||+.+..|+ =.++|.+||.|..|.+.. +. . ..+ + .||+|.+.|+|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3589999999987776 257999999999999832 21 1 111 1 399999999999999999999999999
Q ss_pred EEEEecC
Q 024220 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998875
No 157
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.06 E-value=4.8e-06 Score=71.26 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc---cCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
..++.|+|.||-.-+|.-+|++|+. .+|.|.++.|- +-+..|||.|.+.++|......|||..| +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5689999999999999999999999 67788887551 2267799999999999999999999998 578899998
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8643
No 158
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.05 E-value=3.4e-05 Score=60.36 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+||+|+.+.++.++++.+|+.||.|..+.+..+... ||+||+|.+.+.++.|+. |++..+. +..|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccce
Confidence 34578999999999999999999999999988888777655 599999999999999999 9999998 77777
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
+....
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 66654
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.94 E-value=2.6e-05 Score=64.39 Aligned_cols=66 Identities=27% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC--------C--------CCcEEEEEECCHHHHHHHHHhcCCc
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--------~--------~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
++++|.+.|||.+-.-+.|.+||+.||.|..|.|...+ . .+-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68999999999998889999999999999999995431 1 1347999999999999999977654
Q ss_pred cc
Q 024220 69 NF 70 (270)
Q Consensus 69 ~~ 70 (270)
.-
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.94 E-value=7.2e-05 Score=50.26 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe----------cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~----------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
...+.|.|-+.|+. ....|.+.|++||+|.+..-. .........-|+|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 45678999999988 456788899999999887510 011235688899999999999999 999999886
Q ss_pred e-EEEEecC
Q 024220 74 R-LRVELAH 81 (270)
Q Consensus 74 ~-l~v~~~~ 81 (270)
. +-|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4466653
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.93 E-value=7.4e-05 Score=53.26 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCCeEEEcCCC-----CCCCHH----HHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 4 RFSRTIYVGNLP-----SDIREY----EVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nl~-----~~~t~~----~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+.-||.|.=+. ...-++ +|.+.|..||+|.=+++.. +.-+|+|.+-++|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 455677776555 123333 6888899999998887763 457999999999999999 9999999999
Q ss_pred EEEEecCC
Q 024220 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|+|....+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987543
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.8e-05 Score=66.37 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccc-CeeEE
Q 024220 6 SRTIYVGNLPSDIR------EYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLR 76 (270)
Q Consensus 6 ~~~l~v~nl~~~~t------~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~ 76 (270)
...|+|.|+|.--. ...|..+|+.+|+|..+.+.. .+..+||.|++|++..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35789999987522 233678899999999999864 3678999999999999999999999998885 55666
Q ss_pred EEe
Q 024220 77 VEL 79 (270)
Q Consensus 77 v~~ 79 (270)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 643
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.6e-05 Score=64.51 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHh----cCCccccCeeE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG----RDGYNFDGCRL 75 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~----l~~~~~~g~~l 75 (270)
++.+|||||+||..++.++|..+|+ -||.|..+-|-.+ +-++|-|=|+|.+..+-.+||.. |+...|. |+|
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRV 446 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRV 446 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eee
Confidence 7889999999999999999999999 7999999988555 34789999999999999999973 2322332 456
Q ss_pred EEEec
Q 024220 76 RVELA 80 (270)
Q Consensus 76 ~v~~~ 80 (270)
.|++-
T Consensus 447 EIkPY 451 (520)
T KOG0129|consen 447 EIKPY 451 (520)
T ss_pred eecce
Confidence 66543
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.86 E-value=7.2e-05 Score=57.87 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHH-hcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 139 ~~l~~~f~-~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+++...|. +||+|+.+.+-.+... |-++|.|...++|+.|++.||+..+. +..|....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeee
Confidence 34555555 8999988766554332 58999999999999999999999998 77776544
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.75 E-value=3e-05 Score=62.32 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccc--ceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+||+||-..+|++||.+.+...| .+.++++ ...+.++|||+|...+..+.++.|+.|....|+|+.-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4689999999999999999888766 4455555 3357899999999999999999999999999999887775543
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=0.00013 Score=56.38 Aligned_cols=100 Identities=26% Similarity=0.262 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCccccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC
Q 024220 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (270)
Q Consensus 57 ~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~ 136 (270)
-|..|...|++.+..|+.|.|.|+... .|||.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 355666679999999999999998643 79999999999
Q ss_pred CHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 137 SWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.-+.+.+.|+.||+|....++.|.. ++-++|.|...-.|.+|+..+.-.-+.....++..-|
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 9999999999999998866665543 3689999999999999998775444443333444433
No 167
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=9e-05 Score=66.37 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|+|.|+|+..|.++|..+|..+|.+.++.+ ...++++|.|||.|.++.+|..++...+.+.+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999999887 44689999999999999999999998998888888888887665
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00019 Score=42.36 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=40.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHH
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 179 (270)
..|-|.+.+....+. +..+|..||+|..+.+.... ...+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 357788888776644 55588999999988777322 49999999999999985
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.59 E-value=8.4e-05 Score=66.91 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~ 81 (270)
.+++.+++++|.+.+....|...|..||.|..|.+-.. .-||||.|++...|+.|++.|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 57889999999999999999999999999999988533 6799999999999999999999999975 779999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 65
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.56 E-value=0.00027 Score=57.40 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||-+||..+++.+|.++|.++|.|.. +++.+++.+ +-|.|.|++...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445679999999999999999999999987643 444444433 59999999999999999999999998
Q ss_pred CcccccceeeecCC
Q 024220 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
+..|+|..+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 5666665544
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.54 E-value=0.00028 Score=55.59 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=50.4
Q ss_pred HHHHHHHhhcccceEEEEEecCC----CCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++.+-+.+||.|..|.|+... .-.--.||+|...++|.+|+-.|||.+|+|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 34567788899999999885432 112347999999999999999999999999999988765
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.34 E-value=0.00079 Score=54.19 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=59.8
Q ss_pred CcceEEEeCCCCCCCHHH----H--HHHHHhcCCceEEEEeeCCCC-----c--EEEEEeCChhhHHHHHHhcCCccccC
Q 024220 123 SEYRVIVRGLPSSASWQD----L--KDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~----l--~~~f~~~g~v~~~~~~~~~~~-----g--~~fv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..+.+||.+|++.+..++ | .++|.+||.|..+.+.+.... + -.||+|.+.++|..||.+++|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 346899999998887776 2 579999999988877665422 2 3599999999999999999999998
Q ss_pred cccccceeeecC
Q 024220 190 PWARGRITVKRY 201 (270)
Q Consensus 190 ~~~~~~i~v~~~ 201 (270)
|+.|+..+.
T Consensus 192 ---Gr~lkatYG 200 (480)
T COG5175 192 ---GRVLKATYG 200 (480)
T ss_pred ---CceEeeecC
Confidence 777775443
No 173
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.31 E-value=2.4e-05 Score=68.01 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.-+|||+||...+..+-+..+...||-|..+.... |||+.|..+..+..|+..|+-..++|+.+.+....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 4567999999999999999999999999999987753 99999999999999999999999999999887754
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.31 E-value=0.00096 Score=55.45 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=55.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC---CCC--------------cEEEEEeCChhhHHHHHHhcCC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------g~~fv~f~~~~~a~~a~~~l~g 184 (270)
-+..+|.+.|||.+-..+.|.++|..+|.|..|.|... ... -+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999999999999999999999998876 211 1899999999999999997744
Q ss_pred c
Q 024220 185 T 185 (270)
Q Consensus 185 ~ 185 (270)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00085 Score=57.67 Aligned_cols=66 Identities=27% Similarity=0.383 Sum_probs=55.3
Q ss_pred CcceEEEeCCCCCCCH------HHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 123 SEYRVIVRGLPSSASW------QDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~------~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....|+|.|+|---.. ..|..+|+++|++..+.++.+..+ ||.|++|++..+|+.|++.|||..++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 3468899998854432 246789999999999998877655 69999999999999999999999997
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.26 E-value=0.0021 Score=41.08 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=40.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+..+|+ .|..+...||.++|+.||.|.---|- -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 456676 99999999999999999986544443 3469999999999999998775
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.09 E-value=0.00037 Score=53.92 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=57.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---------c-------EEEEEeCChhhHHHHHHhcCCccc
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------g-------~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
.-.||+.++|+.+...-|+++|..||.|-.|.+...... + -|+|+|.+...|....+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999888765432 1 589999999999999999999999
Q ss_pred c
Q 024220 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
+
T Consensus 154 g 154 (278)
T KOG3152|consen 154 G 154 (278)
T ss_pred C
Confidence 8
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.07 E-value=0.0064 Score=36.80 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=45.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 182 (270)
..|+|.|+.. ++.++|+.+|..| .....++++.+. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 5799999854 7889999999998 245578888887 7899999999999999865
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.02 E-value=0.0023 Score=43.03 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEE-E----------eeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..-|.|-+.|+. ....+.++|++||.|.... + .....++...|+|.++.+|++|+. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 356888899988 5677889999999997764 1 112233599999999999999998 7888887
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.0034 Score=49.68 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCC-----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 139 QDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~-----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+++++.|.+||.|..|.|...+.. --.||+|...+.|.+|+-.|||+.|+ |+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 467889999999999888776543 26899999999999999999999999 7777655543
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.90 E-value=0.011 Score=40.53 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCCC-CcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRP-PCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+..+.+..+|..++.++|..+.+.+- .|..++|..++.+ +--+++.|.+.++|......+||..|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334455555555566677776666554 6778888887764 445788999999999999999998884
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.82 E-value=0.0099 Score=35.99 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~---G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..|+|.++. +++.+||..+|..| .....|..+.+ .-|=|.|.+++.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 479999984 58889999999998 13456666544 24789999999999999854
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.002 Score=55.31 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc--ccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--ccccCeeEEE
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v 77 (270)
.-|.|+|.-||..+-.|+++.||.. |-++++|.+... ..=||+|++..||+.|...|.. ..|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578999999999999999999984 778999988432 1259999999999999987754 4566766544
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.78 E-value=0.013 Score=41.54 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCCeEEEcCCCCCCCH-HH---HHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIRE-YE---VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~-~~---L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+--||.|.=|..++.. +| |...++.||+|..|.+.. +.-|.|.|.+..+|=.|+..++. ...|..+++.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34468888777666432 33 556678999999997753 66799999999999999998886 56678888887
Q ss_pred cCC
Q 024220 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
-+.
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 654
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.76 E-value=0.0077 Score=51.94 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=51.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHh--cCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHh-------cCCcccc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK-------LDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~-------l~g~~~~ 188 (270)
|.|+|..||..+..++++.+|.. +.+++.|++..+. -=||+|++..||++|.+. +.|+.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 88999999999999999999965 6788889887765 479999999999999754 4666654
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.69 E-value=0.0017 Score=48.84 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-ccceE---EEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCccccC--
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRIL---DIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-- 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~---~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-- 72 (270)
.....|.|++||+.+|++++++.++. ++.-. .+.-... .....-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45578999999999999999998887 66552 2221111 1223569999999999999999999977732
Q ss_pred ---eeEEEEecCC
Q 024220 73 ---CRLRVELAHG 82 (270)
Q Consensus 73 ---~~l~v~~~~~ 82 (270)
-...|++|-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3456666654
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.64 E-value=0.008 Score=45.40 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=46.3
Q ss_pred CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CccccCeeEEEEecCCC
Q 024220 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~~~~ 83 (270)
-..+.|.++|..|+.+..+..... -+=..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 345789999999999988877643 3457999999999999999999 89999999999998544
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.59 E-value=0.0016 Score=56.34 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.....+.|+|.||-..+|.-+|+.++.+ .|.|... || ++-.-.|||.|.+.++|.....+|||..+... .++.+.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~s-NPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPS-NPKHLIA 516 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcceeEecccHHHHHHHHHHHhccccCCC-CCceeEe
Confidence 3455789999999999999999999985 5556554 22 22223799999999999999999999887611 1455555
Q ss_pred ecC
Q 024220 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
.+.
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 443
No 189
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.0029 Score=49.15 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcc----ccCeeEEEEec
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN----FDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~----~~g~~l~v~~~ 80 (270)
..|+|.||+.-++-|.|.+-|+.||+|....++.+ ++..+-++|+|...-.|.+|+..++..- ..+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988777554 5677889999999999999998774322 24566555544
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.53 E-value=0.02 Score=36.41 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 17 DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+++.+|..++...+ .|-.|.+. ..|+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 488999999998664 66777776 46899988754 788899999999999999999864
No 191
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.49 E-value=0.0053 Score=49.53 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHH
Q 024220 135 SASWQDLKDHMR 146 (270)
Q Consensus 135 ~~~~~~l~~~f~ 146 (270)
++++++|.+++.
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 455666655543
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.42 E-value=0.018 Score=41.30 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 140 ~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+|.+.|..||.+.-+.+..+ .-+|+|.+-+.|.+|+. ++|.++. |..+.+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEe
Confidence 57788899999998888875 68999999999999998 8999998 77777654
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.41 E-value=0.0015 Score=52.81 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHHHHH---HhhcccceEEEEEecCC------CCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 7 RTIYVGNLPSDIREYEVED---LFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~---~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+-+||-+|+.....+.+.+ .|.+||.|..|.+..+. ..-.-++|+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4467888888866666554 78899999999885432 11233899999999999999999999999999888
Q ss_pred EecCCC
Q 024220 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.014 Score=46.51 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=55.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee-EEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~~~~~ 83 (270)
..|-|-++|+... ..|..+|++||.|.+.... ..-.+-+|.|.+.-+|++||. .||+.|+|-. |-|..+.++
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4577778877644 4688899999999887654 335688999999999999999 8999998754 556665544
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.25 E-value=0.0025 Score=53.76 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDI-REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~-t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+++.|.+..+|+.+ +-++|...|.+||.|..|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 466777888888774 67889999999999999988433 3468999999999988888 899999999999999876
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 196
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.19 E-value=0.00058 Score=56.63 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+.|.|||+....+.|..|+.+||.|+.|....+.......-|+|...+.+..|+..|+|..+....++|.|-...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 3567899999999999999999999999999988555433344457899999999999999999999999999876543
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.11 E-value=0.045 Score=33.71 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++-++|+..+..|+ -..|.... .|| ||.|.+..+|+++....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 45555543 465 89999999999999999999888777665
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.82 E-value=0.044 Score=35.15 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 184 (270)
...+|+ +|...-..||.++|+.||.|. |.++.+. .|||.....+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 345554 999999999999999999986 5555554 899999999999998887754
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.82 E-value=0.032 Score=47.05 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-cceEEEEEecCCCCCcE-EEEEECCHHHHHHHHHhcCCcccc
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+++.|.|-.+|..+|.-||..|...+ -.|.+|++..++.+-.| ++|.|.+.++|......+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999988764 47889999888765554 779999999999999999998884
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.61 E-value=0.19 Score=34.59 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=46.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCc--EEEEEeCChhhHHHHHHhcCCcccc
Q 024220 126 RVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+.+...|..++.++|..+.+.+- .|..+.++++...+ .++++|.+.+.|.+-...+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444555555566666666654 55667888776543 7899999999999999999999996
No 201
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.44 E-value=0.039 Score=44.71 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=11.0
Q ss_pred CcEEEEEECCHHHHHHHHHhcC
Q 024220 45 PCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+.-.||-|. ++....|+..|-
T Consensus 173 RT~v~vry~-pe~iACaciyLa 193 (367)
T KOG0835|consen 173 RTDVFVRYS-PESIACACIYLA 193 (367)
T ss_pred ccceeeecC-HHHHHHHHHHHH
Confidence 455677765 444444444343
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.01 E-value=0.046 Score=46.45 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=56.4
Q ss_pred cceEEEeCCCCCC-CHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 124 EYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+.|-+...|..+ +.++|..+|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|+ ++.|+|.+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEec
Confidence 3455555556555 568899999999999998876652 279999999999977765 7888888 8888887765
Q ss_pred C
Q 024220 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.01 E-value=0.15 Score=33.33 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=45.0
Q ss_pred EEEEECCHHHHHHHHHhcCCc--cccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024220 48 CFVEFENARDAEDAIRGRDGY--NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
|+|+|.++.-|+..+. +..+ .+++..+.|....-....... .......+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k--------------------------~qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK--------------------------FQVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE--------------------------EEEEEcccCC
Confidence 6899999999999988 4443 346666666544322111000 0011123457
Q ss_pred eEEEeCCCCCCCHHHHHHH
Q 024220 126 RVIVRGLPSSASWQDLKDH 144 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~ 144 (270)
+|.|.|||..+.+++|++.
T Consensus 54 tVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred EEEEeCCCCCCChhhheee
Confidence 8999999999999998875
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.86 E-value=0.019 Score=52.14 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc--cCeeEEEEecCCC
Q 024220 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGG 83 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~ 83 (270)
.++.|.+-..+..-|..+|++||.|.++....+ ...|.|+|...+.|..|++.|+|..+ -|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344455556778889999999999999988654 55799999999999999999999776 5888999888754
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.27 E-value=0.29 Score=41.62 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=57.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCc--EEEEEeCChhhHHHHHHhcCCcccc
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|-.+|..++-.||..++..+- .|..+.++++...+ .++|.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998765 67778888876553 7999999999999999999999997
No 206
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.74 E-value=0.15 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=53.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...++||+||-..+|++||.+.....| .+..++++.+..+ |||+|...+.....+.++.|-.+++.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 346899999999999999999888776 4555666655443 69999999999999998888777776
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.65 E-value=0.095 Score=39.48 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=45.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHh-cCCce---EEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccccC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRK-AGDVC---FAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~---~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
....|.|..||+.+|++++.+.+.. ++... .+.-..+... --|||.|.+.+++..-...++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3469999999999999999987766 55442 2221112111 279999999999999999999988873
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=0.38 Score=42.21 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----cceEEEEEecC--C----------CC---------------------
Q 024220 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP--P----------RP--------------------- 44 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~L~~~F~~~----G~v~~~~~~~~--~----------~~--------------------- 44 (270)
+..++.|-|-||... +..+||.-+|+.| |.|..|.|..+ | .+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999987 8999999999866 58889888331 0 11
Q ss_pred --------C---------cEEEEEECCHHHHHHHHHhcCCcccc--CeeEEEEecC
Q 024220 45 --------P---------CYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 45 --------~---------g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
+ =||.|+|.+.+.|...+..++|..|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1 27999999999999999999999995 5666666643
No 209
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.06 E-value=0.27 Score=35.00 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=44.7
Q ss_pred cceEEEeCCCCCC----CHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc
Q 024220 124 EYRVIVRGLPSSA----SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 124 ~~~l~v~~l~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
-.+|.|.=|...+ +...+-...+.||+|..|...... .|.|.|++...|-.|+.+++...
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 3577776554433 333455667889999998776543 89999999999999999988744
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.94 E-value=0.28 Score=43.73 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+..+..++||+|+...+..+-++.+...+|.|..+.... |+|..|....-+..|+..++-..++
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 34455678999999999999999999999999998877666 9999999999999999888877775
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.71 E-value=0.38 Score=38.73 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=44.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
|-|-++|+... .-|..+|.+||.|+++... .++++-+|.|.+..+|++|+. .+|+.|+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 44556665443 4577899999999765544 555699999999999999998 6888877
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.63 E-value=0.089 Score=42.90 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=52.3
Q ss_pred cceEEEeCCCCCCCHHHHH---HHHHhcCCceEEEEeeCCC--C-----cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 124 EYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSE--G-----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~--~-----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+.+||.+|+..+..+.+. +.|.+||.|..+.+..+.. . --++|+|...++|..||...+|..+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 3678888999877666553 5889999999988877652 1 16899999999999999999988877
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.00 E-value=1.2 Score=33.84 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC--CccccCcccccceeeecCC
Q 024220 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~v~~~~ 202 (270)
..+.|+++|..++.+..+.....- +-..|.|.+.+.|..|...|+ +..+. +..+++-++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 457899999999988777666654 368999999999999999999 88887 6667776653
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.95 E-value=0.33 Score=35.53 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=71.7
Q ss_pred CCCHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCCCCCCCCCCC
Q 024220 17 DIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRG 95 (270)
Q Consensus 17 ~~t~~~L~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 95 (270)
..+-..|.+.+.. ++....+.+..- ..++..+.|.+++++..++. .....++|..|.++.-.+.......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~------ 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV------ 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc------
Confidence 3566667666654 333333444221 25788999999999999998 5666778887877766533110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 96 GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.......=|-|.|||.. .+++-+..+.+.+|.+..+......
T Consensus 99 -----------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 99 -----------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred -----------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 00011234667799976 5778889999999999888766544
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.47 E-value=0.63 Score=37.43 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=98.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC----------CCCcEEEEEECCHHHHHHHHH----hcCC--c
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDAIR----GRDG--Y 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~A~~----~l~~--~ 68 (270)
.++.|.+.||..+++--.+.+.|-.||+|+.|++.... +...-+.+-|-+.+.|..... .|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999996543 334678999999999987653 2332 3
Q ss_pred cccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHH-HHHHH--
Q 024220 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD-LKDHM-- 145 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~-l~~~f-- 145 (270)
.+....|.|.+..-..............+.. -....-...-.....+..|.|.=- ..+..++ +.+.+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~---------~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~f 163 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSD---------YLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPF 163 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhh---------HHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhh
Confidence 3566777777664211110000000000000 000000001122334456666533 3443333 33222
Q ss_pred -HhcCC----ceEEEEeeCCC------CcEEEEEeCChhhHHHHHHhcCCc
Q 024220 146 -RKAGD----VCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 146 -~~~g~----v~~~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
..-+. ++.+.++.... ..||.+.|-+...|.+.++.+...
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 22232 34455554322 249999999999999998877633
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.85 E-value=1.8 Score=26.68 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
-.++-++++..+..|+-. .+..+. + --||.|.+..+|+++....+|..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-t-GfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-T-GFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-C-EEEEEECChHHHHHHHHhcCCCEEE
Confidence 356778999999988632 222233 2 3589999999999999999998875
No 217
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.24 E-value=0.3 Score=44.82 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=57.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.++.|.+-..+-..|..+|..||.|..+...++-+ .|.|+|.+.+.|..|++.++|+++-. .|...+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEecc
Confidence 34444555666677999999999999988877654 89999999999999999999998762 25667776665
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.19 E-value=0.42 Score=35.50 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=56.2
Q ss_pred CCCCeEEEcCCCCCC--C---HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe-eEEE
Q 024220 4 RFSRTIYVGNLPSDI--R---EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~--t---~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v 77 (270)
+-.+++++.+|...+ + ......+|.+|-+...+.+.. +.+..-|.|.+++.|..|...+++..|.|+ .++.
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 345678888887763 2 233455666666655555542 245667899999999999999999999887 8888
Q ss_pred EecCCCC
Q 024220 78 ELAHGGS 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.++....
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887653
No 219
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=87.85 E-value=0.25 Score=40.14 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=3.4
Q ss_pred HHHHHHhhc
Q 024220 21 YEVEDLFYK 29 (270)
Q Consensus 21 ~~L~~~F~~ 29 (270)
.+|+.+|+.
T Consensus 172 ~dLw~WyEp 180 (453)
T KOG2888|consen 172 ADLWDWYEP 180 (453)
T ss_pred hHHHHHhhh
Confidence 333333333
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=87.82 E-value=0.22 Score=39.48 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHhhcccceEEEEEec--------CCC-----CCcE---------EE
Q 024220 4 RFSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPR-----PPCY---------CF 49 (270)
Q Consensus 4 ~~~~~l~v~nl~~~------------~t~~~L~~~F~~~G~v~~~~~~~--------~~~-----~~g~---------af 49 (270)
+-..||++.+||.. -+++-|...|..||.|..|.|.. +++ ..|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44578999999975 35677999999999999988832 222 2344 34
Q ss_pred EEECCHHHHHHHHHhcCCccc
Q 024220 50 VEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~ 70 (270)
|+|...-.-..|+..|-|+.+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 666666666677777777665
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=86.64 E-value=0.69 Score=32.19 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=33.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC-HHHHHHHHHhcCC
Q 024220 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRDG 67 (270)
Q Consensus 8 ~l~v~nl~~~---------~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~~ 67 (270)
++.|-|++.. ++.++|.+.|..|.+++-..+.......|++.|+|.. -.--..|+. |+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH-HHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH-HHH
Confidence 4667787553 4667899999999887655555455668999999974 444455665 544
No 222
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=85.79 E-value=0.52 Score=38.40 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=3.3
Q ss_pred EECCHHHHH
Q 024220 51 EFENARDAE 59 (270)
Q Consensus 51 ~f~~~~~a~ 59 (270)
.|.+++-|.
T Consensus 27 ~~~D~~VC~ 35 (319)
T KOG0796|consen 27 KFDDPDVCK 35 (319)
T ss_pred CCCchhHHH
Confidence 333333333
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.41 E-value=3.5 Score=26.00 Aligned_cols=58 Identities=9% Similarity=0.232 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHhcCCc-----eEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 134 SSASWQDLKDHMRKAGDV-----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..++..+|..++...+.+ -.+.+... |+||+-... .|..++..|++..+. ++.+.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~----gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIK----GKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SS----S----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCC----CeeEEEEE
Confidence 567788888888776543 34555554 889987754 788999999999988 88887765
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.66 E-value=2.7 Score=35.38 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=45.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+..+.|-|.++|.....+||...|+.|+. ..+.|+.-. ...||..|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 45688999999999999999999999974 333332211 3569999999999999999
No 225
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=84.12 E-value=11 Score=33.98 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCcceEEEeCCC-CCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 122 HSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 122 ~~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.....+.|.+++ .+++....-+++.+.|++..|.+.+..
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 345678888887 355666666778899999887776654
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.66 E-value=4.3 Score=32.63 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=35.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCH
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+-|+|+|||.++-..||...+...|- ...|... .+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 45999999999999999999887762 3444443 3377899999764
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.25 E-value=6.7 Score=25.50 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=41.5
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024220 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
|+=.+...++..+|.+.++. || .|..|..........-|||.+...++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33356788999999998886 56 7777777555444556999999999888875533
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=80.37 E-value=8.2 Score=24.64 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-|+=.++..++..+|.+.++. || .|..|..........-|||.+...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 444467889999999988886 55 67777775544445569999998888877554
No 229
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=79.77 E-value=0.88 Score=41.85 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=4.1
Q ss_pred ceEEEeCC
Q 024220 125 YRVIVRGL 132 (270)
Q Consensus 125 ~~l~v~~l 132 (270)
...|++++
T Consensus 146 qR~f~gvv 153 (1194)
T KOG4246|consen 146 QRRFAGVV 153 (1194)
T ss_pred ceeeehhh
Confidence 45555544
No 230
>PF14893 PNMA: PNMA
Probab=79.50 E-value=2.4 Score=35.41 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc-ccceEEEEE----ecCCCCCcEEEEEECCH
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIEL----KIPPRPPCYCFVEFENA 55 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~~~~~----~~~~~~~g~afV~f~~~ 55 (270)
|.-+..+.|.|.+||.++++++|++.+.. +-+.-...+ .........|+|+|...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 44577889999999999999999988763 222222333 11122345688888743
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=79.43 E-value=2.3 Score=35.67 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=49.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccc-eEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-+.|.|.+||+..++.+|.+-...|-. |....+... ..-.+.|||.|..+++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467899999999999999998887652 222222211 12357899999999999999999999665
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=78.07 E-value=5.8 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHHhhcccceEEEEE
Q 024220 21 YEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~ 38 (270)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999988877
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.81 E-value=10 Score=32.16 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=46.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
...|-|.++|.....+||...|+.|+. =..|+++.+. .+|..|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 467889999999999999999999974 4557777776 799999999999999874
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=73.48 E-value=0.4 Score=41.85 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.|+|||.||+++++-++|..++..+--+..+.+... .+...+++|.|.---....|+..||+.-+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 578999999999999999999999877777776322 2334678899987777777777777766543
No 235
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.44 E-value=21 Score=21.57 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=32.2
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc
Q 024220 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.-.+|.++|.+.| .|..+....... +++.-+.+.+.+.|.+++. -+|.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~-~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK-EAGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH-HCCC
Confidence 3466888888877 778887754433 4555566778778888877 3443
No 236
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.82 E-value=7.2 Score=32.42 Aligned_cols=8 Identities=50% Similarity=0.625 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 024220 258 RSVSPDKV 265 (270)
Q Consensus 258 rs~s~~r~ 265 (270)
+++++.+.
T Consensus 87 ~sRs~sr~ 94 (426)
T KOG2812|consen 87 RSRSPSRD 94 (426)
T ss_pred cccCCCcc
Confidence 34444433
No 237
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=69.22 E-value=14 Score=24.12 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEF 52 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f 52 (270)
+...-|||+|++..+-+.-...+....+.=.-+-+..+....||+|-.+
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 4566799999998887655555555444433343455556789999876
No 238
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=68.96 E-value=25 Score=32.49 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCCHHHHHHHhhcccceE-----EEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 17 DIREYEVEDLFYKYGRIL-----DIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~-----~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+++.+|..++..-+.|. .|.|. ..|.||+... +.|...+..|++..+.|++|.|+.+...
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 488889888887665443 44454 4688999874 5577888889999999999999987533
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=67.42 E-value=4.4 Score=31.66 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
....+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45689999999999999999999999996665544
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.00 E-value=32 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l 182 (270)
..|.-.++...+..+|++.++. || .|..|....-+.+ .-|+|.+....+|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4566667889999999999987 55 6677766555443 48999999999998876654
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.79 E-value=23 Score=28.67 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=36.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChh
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPE 173 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~ 173 (270)
..-|+++||+.++.-.||+..+.+.+-+.. .+.....-+-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPM-SISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCce-eEeeecCCcceeEecCCcc
Confidence 356999999999999999999988875432 2222223358999998753
No 242
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.88 E-value=32 Score=30.85 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHHhc----CCceEEEEeeCC-------------C---------------------
Q 024220 121 RHSEYRVIVRGLPS-SASWQDLKDHMRKA----GDVCFAEVSRDS-------------E--------------------- 161 (270)
Q Consensus 121 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~----g~v~~~~~~~~~-------------~--------------------- 161 (270)
...+.+|.|.|+.. .+...+|.-+|..| |.|+.|.|.... +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34568999999995 56778898888765 578888876421 1
Q ss_pred --------C---------cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 162 --------G---------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 --------~---------g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
. -||.|+|.+++.|....+.++|.++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 0 18999999999999999999999997
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=65.79 E-value=14 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=24.2
Q ss_pred EEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|||+|.++.+|+.|.+.+.... +..+.|+.+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999544332 345566655433
No 244
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=63.58 E-value=26 Score=20.17 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 024220 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
.++.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777766 7877777554445677788888988888775
No 245
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=62.78 E-value=3.4 Score=38.28 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.4
Q ss_pred CCCCCHHHH
Q 024220 133 PSSASWQDL 141 (270)
Q Consensus 133 ~~~~~~~~l 141 (270)
|..++...|
T Consensus 196 pfkwnaqri 204 (1194)
T KOG4246|consen 196 PFKWNAQRI 204 (1194)
T ss_pred CccccHHHH
Confidence 333333333
No 246
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=62.08 E-value=1.9 Score=35.74 Aligned_cols=48 Identities=17% Similarity=-0.002 Sum_probs=39.1
Q ss_pred HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc
Q 024220 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
...+.+++.+.|.|..-.|..+-+ .|.+||.+-.++++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFN-mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFN-MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhc-CccceEEEEcHHHHHHHHHHHHhc
Confidence 567888888999888777755433 788999999999999999988864
No 247
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=61.42 E-value=13 Score=27.85 Aligned_cols=49 Identities=8% Similarity=-0.043 Sum_probs=33.6
Q ss_pred HHHHHHHhhcccceEEEEEecC--C--CCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 20 EYEVEDLFYKYGRILDIELKIP--P--RPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~--~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++|.++-+ |.+..+.+... + ..+|-.||+|.+-+.|.+.++ -++..+.
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~ 175 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGA 175 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhcc
Confidence 344444444 78999988443 2 457889999999999999877 3443333
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.49 E-value=42 Score=21.43 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=42.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l 182 (270)
.-|+-.++...+..+|+..++. |+ .|..|..+.-+.+ .-|||.+.....|.....++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4666778899999999999987 55 5666665554433 38999999998888776554
No 249
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=60.18 E-value=34 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred EcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+-.+...++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 86 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3346678999999988886 55 56666665443344569999988777665444
No 250
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=59.05 E-value=44 Score=21.25 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=42.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc-------cceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKY-------GRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~-------G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
-|...+||..+|.++|....... ..|.-+.-.. ....+-||+.+=.+++...++-+ -.|+..+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~d 72 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPAD 72 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCcc
Confidence 35677899989999988877533 2344444322 23457788888889999888877 4466543
No 251
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=58.85 E-value=32 Score=27.91 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=14.1
Q ss_pred EEEECCHHHHHHHHHhcCC-ccccCeeEEEEe
Q 024220 49 FVEFENARDAEDAIRGRDG-YNFDGCRLRVEL 79 (270)
Q Consensus 49 fV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~ 79 (270)
+|-|+|.--.+-.+..|.. ..++-++|+|.+
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 3445544444444444443 444445555543
No 252
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.41 E-value=3.8 Score=34.77 Aligned_cols=8 Identities=63% Similarity=0.650 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 024220 257 SRSVSPDK 264 (270)
Q Consensus 257 srs~s~~r 264 (270)
+|++||.+
T Consensus 293 srsrS~~~ 300 (450)
T KOG3869|consen 293 SRSRSPLR 300 (450)
T ss_pred hcccCccc
Confidence 33444333
No 253
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=58.32 E-value=6.2 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLF 27 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F 27 (270)
-..++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999998654
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=53.22 E-value=33 Score=22.18 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc
Q 024220 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.|.++.. .+..+||-|||=.+++++..|+..+.+..
T Consensus 33 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEE--eCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3444433 45579999999999999999998776543
No 255
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=52.93 E-value=15 Score=23.80 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHhcCC
Q 024220 134 SSASWQDLKDHMRKAGD 150 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~ 150 (270)
...+.+++.++...|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45677777777777643
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=52.45 E-value=17 Score=30.67 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=48.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.|..||+..++.++.+....+-. +.+..+.....+ +.+||.|..+++.+.-...++|..+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 68899999999999999888877653 333333322111 37999999999999999989998876
No 257
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=51.96 E-value=23 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred cEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 46 CYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+++|.|.+..+|.+|-..|...-|.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999999999988766554
No 258
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=51.66 E-value=36 Score=22.82 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-++-+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 455679999998877654443444444432222234455556998887654
No 259
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=51.55 E-value=48 Score=28.41 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----cceEEEEEecC-------------CC---------------------
Q 024220 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR--------------------- 43 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~L~~~F~~~----G~v~~~~~~~~-------------~~--------------------- 43 (270)
+.++..|-|=||... +...+|..+|+.| |.|..|.|..+ |-
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 577888999999886 8889999999865 46776766211 00
Q ss_pred ---------------CCc-------------------EEEEEECCHHHHHHHHHhcCCccccC--eeEEEEec
Q 024220 44 ---------------PPC-------------------YCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 44 ---------------~~g-------------------~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~ 80 (270)
-.| ||.|++.+.+.+...+..++|..+.. ..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 011 68899999999999999999988853 44555444
No 260
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=49.82 E-value=69 Score=21.53 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024220 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+-++++|..+...=|.|.+|.+..+.-..=.|.+...+..++..+++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345778888888778999999955432233477889999999999997763
No 261
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.28 E-value=13 Score=29.83 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=48.7
Q ss_pred ceEEEeCCCC------------CCCHHHHHHHHHhcCCceEEEEeeCC---------CCc--------------EEEEEe
Q 024220 125 YRVIVRGLPS------------SASWQDLKDHMRKAGDVCFAEVSRDS---------EGT--------------YGVVDY 169 (270)
Q Consensus 125 ~~l~v~~l~~------------~~~~~~l~~~f~~~g~v~~~~~~~~~---------~~g--------------~~fv~f 169 (270)
.+|++.++|- -.+++.|...|..||.|..|.++.-. ..| -|||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 4666666652 23567799999999999988876421 111 245556
Q ss_pred CChhhHHHHHHhcCCccccCccccc----ceeeecC
Q 024220 170 TNPEDMKYAIRKLDDTEFRNPWARG----RITVKRY 201 (270)
Q Consensus 170 ~~~~~a~~a~~~l~g~~~~~~~~~~----~i~v~~~ 201 (270)
........|+..|.|..+....++. .+.|+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfd 265 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFD 265 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccc
Confidence 5566667788888888776333333 3445544
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.46 E-value=2.8 Score=35.77 Aligned_cols=75 Identities=7% Similarity=-0.141 Sum_probs=55.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+...++..||..+++++|.-+|..||.|..+.+.. .+...-.+||.-.. ++|..+|.-+....++|..+.|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 34567889999999999999999999998887732 33445567776554 44555666677777888888887765
No 263
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.09 E-value=15 Score=19.47 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhcccc
Q 024220 16 SDIREYEVEDLFYKYGR 32 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (270)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 35889999999987653
No 264
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=47.66 E-value=51 Score=20.65 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=28.7
Q ss_pred HhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 26 LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-+..||.|..+.-. ..|+ |-|-+.++++..++.|....+
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 35689999887543 4464 458899999999998876554
No 265
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=46.72 E-value=60 Score=19.11 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH----HHHHHHHHh
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
||.|.||.-.--...|.+.+...-.|.++.+... .+.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788888888888889999998888999888543 46788888744 566666663
No 266
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.67 E-value=47 Score=29.69 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred EEcCCCCCCC---HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeE
Q 024220 10 YVGNLPSDIR---EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 10 ~v~nl~~~~t---~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
+||||+.-.. ..-|..+-.+||+|..+.+=. .=.|.-.+.+.|+.|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4666654432 244555666899999888721 23688899999999999 78999999886
No 267
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=44.49 E-value=1.2e+02 Score=22.04 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=40.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~ 181 (270)
.+.|+-.+....+..+|++.++. |+ .|..|....-+.+ .-|||.+....+|......
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 35666678889999999999987 55 5566655544433 3899999888877655443
No 268
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=43.43 E-value=1.1e+02 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
.....+|+.+|+.++.++...++....-.++.+.+++.
T Consensus 299 l~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 299 LDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34579999999999999999999999988999998885
No 269
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=43.33 E-value=83 Score=19.78 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhc
Q 024220 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 182 (270)
.++.+.+..+| +....+.....+++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35666777888 44455555544568999998999988888766
No 270
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=42.85 E-value=1.2e+02 Score=21.50 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~---~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.|.|...... .+...+.+.+..-| .++.+... .+...|.|.++++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3456777766333 56778888888877 55555543 236789999999999999988766555556666554
Q ss_pred C
Q 024220 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 271
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.77 E-value=70 Score=26.21 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=44.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-----------CcEEEEEeCChhhHHH
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKY 177 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----------~g~~fv~f~~~~~a~~ 177 (270)
...|...|+...++--.+...|.+||+|+.|.++.+.. .....+-|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 46788899999999999999999999999999988761 1377888888776643
No 272
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=41.13 E-value=93 Score=23.92 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-cccc--CeeEEEE
Q 024220 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFD--GCRLRVE 78 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~--g~~l~v~ 78 (270)
.+.++..+++..++.-. +.|+.++...|-+.+...+.++|..|+..+-. ..++ +..|.|+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 46777888887776433 56677776666667778999999999976532 3332 3445444
No 273
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.60 E-value=77 Score=19.61 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|.+-|...| +|..+.-+. +..+...-||+.+...+...+ |+=..|++..|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777777777 666665533 345566778888766554444 3335678899999876543
No 274
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=40.57 E-value=69 Score=21.00 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+. |.+...+. ++=.-+-+..+.+..||+|-++-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~-lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRER-IWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHH-HHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 455679999998877554 44433332 321222224455667888877654
No 275
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.53 E-value=1.2e+02 Score=20.68 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHHHHhhcccceEEEEEecCC-CCCcEEEEEECCHHHHHHHHH
Q 024220 21 YEVEDLFYKYGRILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..+++.+| |.+-.|..++ .+.-||+++|.|.+....+|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35778888888 5665554433 457799999997777766665
No 276
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=40.01 E-value=44 Score=26.97 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
-...|+|||+++|..-|..++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 36789999999999999999987655534333
No 277
>PRK02302 hypothetical protein; Provisional
Probab=39.61 E-value=75 Score=20.93 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=28.1
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+..||.|..+.-. ..|+ |-|-+.++|+..++.|....+
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4689998887543 3454 558899999999998876544
No 278
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=39.18 E-value=96 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=35.0
Q ss_pred HHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 20 EYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 20 ~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
--+|..+|. .+|-|..+.+... .......++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 456777776 6889988888433 3335677889999999999987653
No 279
>PRK02886 hypothetical protein; Provisional
Probab=39.11 E-value=77 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=28.2
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+..||.|..+.-. ..|+ |-|-+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4689999887543 3454 558899999999998876554
No 280
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.74 E-value=6.6 Score=34.70 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=51.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.+++.|+++.++-++|..+|..+.-+..+-+-.+... .+.+|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3578999999999999999999999876655544433211 27899999888888888888887765
No 281
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=38.67 E-value=19 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.0
Q ss_pred eEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecC
Q 024220 8 TIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (270)
Q Consensus 8 ~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~ 41 (270)
-|.|.|||.. .+++-|.++.+.+|.+..+.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3778899998 788889999999999999988543
No 282
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.13 E-value=99 Score=19.26 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHHhcC-CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 139 QDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 139 ~~l~~~f~~~g-~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
++|.+.|...| .+..+.-+....+ +.-+|+.....+-.. -|+=+.+. +..+.|+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLG----GQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhC----CeeEEEecCcc
Confidence 46888899998 6777877776654 256666654432222 23333343 77777776654
No 283
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=37.95 E-value=86 Score=18.43 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECC
Q 024220 17 DIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFEN 54 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~ 54 (270)
.-.-.+|.++|..+| .|..+...... .......+.+.+
T Consensus 10 ~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 10 PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 344567888888887 77777764432 233444444544
No 284
>PF15063 TC1: Thyroid cancer protein 1
Probab=37.12 E-value=21 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEcCCCCCCCHHHHHHHhhcccce
Q 024220 10 YVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~~G~v 33 (270)
-+.||-.+++.++|+.||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356888899999999999998853
No 285
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=36.67 E-value=85 Score=24.29 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCHHHHHHHhhcccc---eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+.+++.+....+|. |....+..-+..++=+...-.++++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888877663 555555555566663343445899999999988888876
No 286
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.10 E-value=32 Score=25.92 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=48.5
Q ss_pred ceEEEeCCCCCCCH-----HHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccc-ceee
Q 024220 125 YRVIVRGLPSSASW-----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-RITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~i~v 198 (270)
..+++.+++..+.. .....+|.+|.+.....+.+.. +...|.|.+++.|..|..++++..+. +. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~----~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFN----GKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccC----CCceEEE
Confidence 45667777655432 3456677777665554444433 36788999999999999999999998 44 5554
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 4443
No 287
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=1.1e+02 Score=20.11 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCC----CCcEEEEEECCHHHHHHHHHhcCC
Q 024220 2 SGRFSRTIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPR----PPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+++++++||. +|...++-..|.+.|+. .| ...++++..+|. .+.=+=+.|++-+..+...+.+-|
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3567777877 78888888889998874 45 445555544331 122234567777777776665544
No 288
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=34.04 E-value=1.1e+02 Score=18.76 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhhc--ccceEEEEEecCCCCCcEE-EEEECC
Q 024220 17 DIREYEVEDLFYK--YGRILDIELKIPPRPPCYC-FVEFEN 54 (270)
Q Consensus 17 ~~t~~~L~~~F~~--~G~v~~~~~~~~~~~~g~a-fV~f~~ 54 (270)
.+. ++|.+.+.. .|.|...+|. ++ .|.+ +|+|.+
T Consensus 15 Ri~-~~l~~~l~~~~~g~I~~fKmt-DG--~giG~vv~~~n 51 (64)
T PF11061_consen 15 RIP-KELVDKLGKNPIGTIKGFKMT-DG--SGIGVVVEFSN 51 (64)
T ss_pred hcc-HHHHHHhccCCcEEEEEEEEe-cC--CcEEEEEEecC
Confidence 344 445556665 8999999885 33 3444 466654
No 289
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.09 E-value=1.1e+02 Score=18.29 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=27.9
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCHHHHHHHHHhc
Q 024220 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|.++|..+| .|..+...... ...+...+.+...++..++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888888887 66676653321 12455567776554555555443
No 290
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.03 E-value=48 Score=26.71 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=23.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh--cccceE
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFY--KYGRIL 34 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~--~~G~v~ 34 (270)
...++|+|||+.++..-|.+++. .||.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccc
Confidence 45789999999999999999987 444433
No 291
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=33.01 E-value=1.4e+02 Score=19.55 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcC-CceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 024220 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 138 ~~~l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 183 (270)
.+.++++++..| ++..+.+..+.-.....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 345777887776 7888888877655577788888888777765443
No 292
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=32.95 E-value=3.6e+02 Score=25.20 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=34.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---ccceEEEEEecCCCCCcEEE-EEECCHHHHHHHHHh
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRG 64 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~ 64 (270)
..+|.|+-||+.++.+.|.+.... -|.+. |.-..+....+..| |++.....+...+..
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~ 281 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEA 281 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHH
Confidence 468999999999999998886542 24443 22222222245555 445544455544443
No 293
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.75 E-value=3.9e+02 Score=24.62 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=57.1
Q ss_pred CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--Cccc------cCeeEEEEecCCCCCCCCCC
Q 024220 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNF------DGCRLRVELAHGGSGRGPSS 90 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~------~g~~l~v~~~~~~~~~~~~~ 90 (270)
-.++|.+.|..-+-|..+.+.. .||-++.+....-+...+..+. +-.+ .|++|.|+++.+.+
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------ 128 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------ 128 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC------
Confidence 3455666666555577777742 2444443343333333333333 2222 57899999987551
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCC
Q 024220 91 SDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 160 (270)
..-+.|+-+-..+--+.|..++...| .|+....+.|.
T Consensus 129 ---------------------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 129 ---------------------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred ---------------------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 12356666666666778888888888 56655555554
No 294
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.43 E-value=1.5e+02 Score=19.70 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHhhc-------c-cceEEEEE--------ecCCCCCc-EEEEEECCHHHHHHHHH
Q 024220 14 LPSDIREYEVEDLFYK-------Y-GRILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIR 63 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~-------~-G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
|.++++++++..+... . |.|..+.- .......| |.++.|.-+.++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4567777776665543 3 36655543 11233445 67888987777777765
No 295
>PRK15464 cold shock-like protein CspH; Provisional
Probab=32.36 E-value=36 Score=21.22 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=11.9
Q ss_pred cceEEEEEecCCCCCcEEEEEECC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~KGfGFI~~~~ 25 (70)
T PRK15464 7 GIVKTFDR-----KSGKGFIIPSD 25 (70)
T ss_pred EEEEEEEC-----CCCeEEEccCC
Confidence 55555433 38999997543
No 296
>PRK11901 hypothetical protein; Reviewed
Probab=32.11 E-value=1.5e+02 Score=24.87 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCC-CC-cEEE--EEECCHHHHHHHHHhcCCc
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR-PP-CYCF--VEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~-~~-g~af--V~f~~~~~a~~A~~~l~~~ 68 (270)
...+|.|-.+ ..++.|..|..+++ +..+.+..+.. .+ =|.. =.|.+.++|..|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456666654 34677888887775 44555543321 11 1222 2689999999999988643
No 297
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.87 E-value=19 Score=30.07 Aligned_cols=48 Identities=25% Similarity=0.221 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCc
Q 024220 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
...+.++..+.|.|..-++.+.-+-|.+||..-.+++++++++.+.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888889999888877777777789999999999999999998876
No 298
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=31.41 E-value=42 Score=29.89 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=34.9
Q ss_pred CCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 44 PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...++++.|+++..+.+|+..++|..+.+..+.++.+...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3578999999999999999999999998888888777644
No 299
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=31.31 E-value=18 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLF 27 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F 27 (270)
..+++||||+||..+-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 457899999999987655533333
No 300
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=31.20 E-value=31 Score=20.91 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=10.2
Q ss_pred HHHHHHHhhcccceEEE
Q 024220 20 EYEVEDLFYKYGRILDI 36 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~ 36 (270)
-=|+.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35889999999976543
No 301
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.16 E-value=63 Score=26.87 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEeCChhhHHHHHHhcCCcc
Q 024220 165 GVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
|||+|.+..+|+.|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999766554
No 302
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=31.02 E-value=1.6e+02 Score=20.56 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024220 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.-|.+.|..++ .+..++...+.+.+..-|+.-.+.+.|..|++ -.|..+
T Consensus 84 ~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLe-d~gi~~ 133 (142)
T COG4747 84 SRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALE-DAGIKL 133 (142)
T ss_pred HHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHH-HcCCee
Confidence 34566666655 45555555455556666677778888999998 444443
No 303
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.90 E-value=55 Score=21.64 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 14 LPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+-+.++...|...|-.-|. -.-..+.. +.=+.+|.|.|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRk-D~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRK-DYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhcc-ccceEeEEEECCChHHHHHHHHHHH
Confidence 3445666677666655441 11111111 1125689999999999999988663
No 304
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=30.83 E-value=18 Score=22.34 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++|++.|..++....+. +=.+|..|.+.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 67888887655443321 1147999999999998887553
No 305
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.64 E-value=1.2e+02 Score=17.73 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCHHHHHHHHH
Q 024220 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|.++|.++| .|..+...... .......+...+.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 45677777776 66666553322 223444555667777777776
No 306
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.66 E-value=1.3e+02 Score=18.06 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=26.8
Q ss_pred CHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEC--CHHHHHHHHH
Q 024220 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFE--NARDAEDAIR 63 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~--~~~~a~~A~~ 63 (270)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.+++.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4456788888887 6777765433 222333445554 6666677776
No 307
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=29.05 E-value=48 Score=20.90 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=7.0
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 KGfGFI~~~ 21 (74)
T PRK09937 13 KGFGFICPE 21 (74)
T ss_pred CCeEEEeeC
Confidence 899999643
No 308
>PRK15463 cold shock-like protein CspF; Provisional
Probab=28.67 E-value=46 Score=20.70 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.8
Q ss_pred cceEEEEEecCCCCCcEEEEEECC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~kGfGFI~~~~ 25 (70)
T PRK15463 7 GIVKTFDG-----KSGKGLITPSD 25 (70)
T ss_pred EEEEEEeC-----CCceEEEecCC
Confidence 55555433 38999997543
No 309
>PRK14998 cold shock-like protein CspD; Provisional
Probab=28.54 E-value=50 Score=20.75 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=11.4
Q ss_pred cceEEEEEecCCCCCcEEEEEEC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
|.|+.+.- .+||+||+=.
T Consensus 4 G~Vkwfn~-----~kGfGFI~~~ 21 (73)
T PRK14998 4 GTVKWFNN-----AKGFGFICPE 21 (73)
T ss_pred eEEEEEeC-----CCceEEEecC
Confidence 55555433 3899999744
No 310
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=28.47 E-value=50 Score=20.33 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.4
Q ss_pred cceEEEEEecCCCCCcEEEEEECC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.. .+||+||+=.+
T Consensus 4 G~Vk~f~~-----~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNN-----AKGFGFICPEG 22 (68)
T ss_pred eEEEEEeC-----CCCeEEEecCC
Confidence 55555533 38999997654
No 311
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.46 E-value=1.8e+02 Score=19.22 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=22.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEe
Q 024220 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELK 39 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~ 39 (270)
.|+=.++..+|..||.+.|+. || .|..|...
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 344457789999999999986 55 66666663
No 312
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.45 E-value=1.5e+02 Score=20.73 Aligned_cols=43 Identities=12% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhhc-ccceEE-EEE------ecCCCCCcEEEEEECCHHHHHH
Q 024220 17 DIREYEVEDLFYK-YGRILD-IEL------KIPPRPPCYCFVEFENARDAED 60 (270)
Q Consensus 17 ~~t~~~L~~~F~~-~G~v~~-~~~------~~~~~~~g~afV~f~~~~~a~~ 60 (270)
.++.+||++-+.. |-.-.+ |.+ ...+.+.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788888887764 321111 222 123567778776 777776654
No 313
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=28.22 E-value=2e+02 Score=19.61 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHhhcccceEEEEEe----cCCC--------------CCcEEEEEECCHHHHHHHHHhc
Q 024220 21 YEVEDLFYKYGRILDIELK----IPPR--------------PPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~----~~~~--------------~~g~afV~f~~~~~a~~A~~~l 65 (270)
+...++|..||.+.-+.-- ..++ .--|.+|+|.+.+...++...+
T Consensus 23 ~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 23 EKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3456789999966555441 1121 1238999999999988887653
No 314
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=31 Score=29.42 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHhhc--ccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHH
Q 024220 6 SRTIYVGNLPSDIREY--------EVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~--------~L~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+.+|+.+.....+.+ ++...|.. .+++..+.+.. ..+..|-.|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3556666666654444 89999998 66777777743 34677888999999999999875
No 315
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.04 E-value=2.4e+02 Score=20.58 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024220 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
|.++.+. ....||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 34689999999988999999987765
No 316
>PRK10943 cold shock-like protein CspC; Provisional
Probab=27.73 E-value=47 Score=20.54 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=7.2
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 15 kGfGFI~~~ 23 (69)
T PRK10943 15 KGFGFITPA 23 (69)
T ss_pred CCcEEEecC
Confidence 899999754
No 317
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=27.61 E-value=50 Score=20.45 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=7.2
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 15 kGyGFI~~~ 23 (69)
T PRK09507 15 KGFGFITPE 23 (69)
T ss_pred CCcEEEecC
Confidence 899999744
No 318
>PHA01632 hypothetical protein
Probab=27.45 E-value=67 Score=18.87 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 024220 9 IYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~ 29 (270)
|.|..+|..-|+++|+..+..
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445689999999999987753
No 319
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.26 E-value=48 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=27.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 156 (270)
.++|+.|+|...+++.|..+.+..|-+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 58999999999999999999999986554433
No 320
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=27.04 E-value=1.6e+02 Score=18.26 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhhcccc---eEEEEE-ecCCCCCcEEEEEEC-CHHHHHHHHHhcCC
Q 024220 16 SDIREYEVEDLFYKYGR---ILDIEL-KIPPRPPCYCFVEFE-NARDAEDAIRGRDG 67 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~---v~~~~~-~~~~~~~g~afV~f~-~~~~a~~A~~~l~~ 67 (270)
..+.+..|-++...||- |..-.+ ...+.+-|.-+|++. +.++.++|+..|..
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 35666678888888873 333333 223556788888885 44556778776653
No 321
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=27.00 E-value=1.6e+02 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhhc-cc--ceEEEEE--ecC--CCCCcEEEEE-ECCHHHHHH
Q 024220 17 DIREYEVEDLFYK-YG--RILDIEL--KIP--PRPPCYCFVE-FENARDAED 60 (270)
Q Consensus 17 ~~t~~~L~~~F~~-~G--~v~~~~~--~~~--~~~~g~afV~-f~~~~~a~~ 60 (270)
..+..+|.+-+.. |+ +..-|.+ +.+ |.....||+- |.+.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence 4677788876654 55 2233333 222 3334444443 555555443
No 322
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=26.90 E-value=1.6e+02 Score=22.44 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=27.8
Q ss_pred EEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 50 VEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|.+.++|..-++ -.|..+....|+|....+.
T Consensus 47 ~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 47 IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKPS 79 (238)
T ss_pred hhccCHHHHHHHHH-HhcchheeeeEEEecCCcc
Confidence 46999999999999 7888899899999876543
No 323
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=26.79 E-value=95 Score=18.06 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGR 32 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~ 32 (270)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778887768888999999999885
No 324
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=26.53 E-value=1.3e+02 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cc-ceEEEEE
Q 024220 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIEL 38 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~ 38 (270)
++=.++..+|.-||.+.++. || .|..|..
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt 53 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNT 53 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEE
Confidence 34457889999999999986 55 5666665
No 325
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=26.34 E-value=1.7e+02 Score=25.43 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024220 17 DIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 17 ~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
...--+|..+|- .+|-|..+.+... .....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 333446788875 3788888888432 344567788999999999998554
No 326
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=26.02 E-value=3.5e+02 Score=21.73 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccc
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G 31 (270)
+.++++.|+ .|+..++++-|.-+..++|
T Consensus 155 Dh~nr~aY~-~lS~Rad~~lLe~fc~~~g 182 (318)
T COG4874 155 DHPNRTAYA-GLSQRADRELLEVFCEQIG 182 (318)
T ss_pred cccchhhhh-hhhcccCHHHHHHHHHHcC
Confidence 467788887 5788888877777777777
No 327
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=25.98 E-value=85 Score=25.07 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=20.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G 31 (270)
-+.|+|||+.++.+.|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 378999999999999999997444
No 328
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=25.28 E-value=2.1e+02 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=28.0
Q ss_pred EecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 38 LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 38 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++....-+||-|||=..+..+..||+.|-+....
T Consensus 203 v~a~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 203 VFAKDHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred EEeccccceeEEEEechhHHHHHHHhhhhhheec
Confidence 3444566999999999999999999988877666
No 329
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=25.14 E-value=63 Score=19.48 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=8.4
Q ss_pred CcEEEEEECC
Q 024220 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+|||||+-.+
T Consensus 12 kgyGFI~~~~ 21 (66)
T PF00313_consen 12 KGYGFITSDD 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCceEEEEcc
Confidence 7999998765
No 330
>PRK09890 cold shock protein CspG; Provisional
Probab=24.82 E-value=58 Score=20.22 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=11.5
Q ss_pred cceEEEEEecCCCCCcEEEEEEC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
|.|+.+.- .+||+||+=.
T Consensus 7 G~Vk~f~~-----~kGfGFI~~~ 24 (70)
T PRK09890 7 GLVKWFNA-----DKGFGFITPD 24 (70)
T ss_pred EEEEEEEC-----CCCcEEEecC
Confidence 55555433 3899999754
No 331
>PRK11901 hypothetical protein; Reviewed
Probab=24.75 E-value=1.7e+02 Score=24.49 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=37.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc---EEE--EEeCChhhHHHHHHhcCCcc
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGV--VDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g---~~f--v~f~~~~~a~~a~~~l~g~~ 186 (270)
...++|-|.. ...++.|..+..+++ +..+.++.....| |.. =.|.+.++|..|+..|-...
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3344555544 345777888877775 3334454443333 333 34788999999998875543
No 332
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=24.71 E-value=3.7e+02 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=26.4
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.|-| +.|.++++|.+|+. ++..-.|..|.|.+.-++
T Consensus 398 ~GpA-~VF~see~a~~ai~--~g~I~~gdVvViRyeGPk 433 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPK 433 (552)
T ss_pred eeeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 4444 45999999999998 455667778888776544
No 333
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=24.69 E-value=1.7e+02 Score=27.81 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=43.3
Q ss_pred EEEcCCC--CCCCHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCHHHHHHHHHhcCCccccCeeE-EEEec
Q 024220 9 IYVGNLP--SDIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL-RVELA 80 (270)
Q Consensus 9 l~v~nl~--~~~t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l-~v~~~ 80 (270)
|+|.+-. ..++......+|..|| +|.-+.+++++ +-+..+.+ .++-+.||..||.....-.+| .+.|.
T Consensus 312 I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~IL----~~eF~~ai~yLNqflp~e~rl~~i~wD 384 (868)
T KOG1888|consen 312 IVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESIL----REEFENAIDYLNQFLPPENRLKYIHWD 384 (868)
T ss_pred eEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHHH----HHHHHHHHHHHhccCCCcceeeeeech
Confidence 4554443 4688899999999999 77777777665 32332222 466778888888554443333 44444
No 334
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.56 E-value=2e+02 Score=19.26 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCCHHHHHH---HhhcccceEEEEE-----ecCCCCCcEEEEE
Q 024220 8 TIYVGNLPSDIREYEVED---LFYKYGRILDIEL-----KIPPRPPCYCFVE 51 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~---~F~~~G~v~~~~~-----~~~~~~~g~afV~ 51 (270)
..|+.|||.++.+.++.. .|..+++-..|.. .....+.|++.+-
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l 63 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISL 63 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEE
Confidence 358899999987777554 4555554445544 1233455655543
No 335
>PF14893 PNMA: PNMA
Probab=23.67 E-value=69 Score=26.96 Aligned_cols=51 Identities=12% Similarity=0.347 Sum_probs=32.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHh----cCCceEEE--EeeCCCCcEEEEEeCChhh
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRK----AGDVCFAE--VSRDSEGTYGVVDYTNPED 174 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~----~g~v~~~~--~~~~~~~g~~fv~f~~~~~ 174 (270)
...|.|.++|.++++++|++.+.. .|...-.. +.++.+..-++|+|...-+
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 357999999999999999887754 34322211 1222223477887775444
No 336
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=23.60 E-value=1.6e+02 Score=26.87 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCHHHHHHHh----hcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhc
Q 024220 18 IREYEVEDLF----YKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 18 ~t~~~L~~~F----~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+--||..+| ..+|-|.++.+.. .......+++.|.+.++|..|+..+
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 3445788887 3688999988843 2344667899999999999988754
No 337
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.59 E-value=1.7e+02 Score=17.17 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=26.5
Q ss_pred CHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEECC--HHHHHHHHHhcCC
Q 024220 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFEN--ARDAEDAIRGRDG 67 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~--~~~a~~A~~~l~~ 67 (270)
.-.+|..+|..+| .|..+..... +....+..+...+ .+++..++..+.+
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~ 64 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPN 64 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 4567888888776 6666665432 2233344455553 3444444444443
No 338
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.43 E-value=97 Score=25.13 Aligned_cols=22 Identities=27% Similarity=0.239 Sum_probs=19.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~ 29 (270)
.+.|+|+|+.++..-|.+++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999999988864
No 339
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=23.27 E-value=64 Score=19.99 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=7.1
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 16 kGfGFI~~~ 24 (70)
T PRK10354 16 KGFGFITPD 24 (70)
T ss_pred CCcEEEecC
Confidence 899999743
No 340
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=23.22 E-value=94 Score=25.67 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKY 30 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~ 30 (270)
.+.|.|||+.++...|.+++...
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~ 125 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHR 125 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcC
Confidence 47889999999999999998653
No 341
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=23.10 E-value=1.6e+02 Score=18.71 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=17.2
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCcc
Q 024220 45 PCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+..+|.|+..++-..|.. |.|..
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~~ 77 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGCE 77 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-E
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCCE
Confidence 6678999999999999988 66543
No 342
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.73 E-value=1.7e+02 Score=21.95 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHhhcccc
Q 024220 16 SDIREYEVEDLFYKYGR 32 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (270)
..+|-++|.++|.+|+.
T Consensus 107 hgcT~e~I~~~F~~ys~ 123 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD 123 (175)
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 46899999999999985
No 343
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=22.43 E-value=1.7e+02 Score=16.94 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEE-CCHHHHHHHHHhc
Q 024220 20 EYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEF-ENARDAEDAIRGR 65 (270)
Q Consensus 20 ~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 65 (270)
-.+|.++|...| .|..+....+.....++|+.+ .+...+..+++.|
T Consensus 14 l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 14 LADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHH
Confidence 356777888777 677777754433244555444 3444444444433
No 344
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=22.21 E-value=5.1e+02 Score=22.40 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=45.7
Q ss_pred CCHHHHHHHhhccc---ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC----ccccCeeEEEEecCCC
Q 024220 18 IREYEVEDLFYKYG---RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG----YNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~L~~~F~~~G---~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~g~~l~v~~~~~~ 83 (270)
.+++++.++-..+| -|....++.-+..+.=+.-.-.++++|..+.+.+=| +.+.|..+..-+..+.
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 67888888888886 345555555555565444445689999999988888 7778876665554433
No 345
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=21.77 E-value=81 Score=18.90 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=8.0
Q ss_pred CcEEEEEECC
Q 024220 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+|||||+=.+
T Consensus 12 kGfGFI~~~~ 21 (65)
T cd04458 12 KGFGFITPDD 21 (65)
T ss_pred CCeEEEecCC
Confidence 7999997655
No 346
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=21.62 E-value=1.8e+02 Score=16.98 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=29.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEECCH-HHHHHHHHhcC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFENA-RDAEDAIRGRD 66 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~~-~~a~~A~~~l~ 66 (270)
+|.|.--...-.-.+|..+|..+| .|..+..... +......++++... +....++..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 444433333334567888888876 6666665432 22223344444322 44444555444
No 347
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=21.47 E-value=2.3e+02 Score=18.00 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCC--CCcEEEEEECCHHHHHHHHHhcCCc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPR--PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
+|+|.|-|--+ +.+..+|..-| .|.++.+-.+.. -..+-++...+++...+.++.|+..
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 56777776554 45888999877 888888854432 2244566678999999888888753
No 348
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.46 E-value=1.9e+02 Score=17.01 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=26.5
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.-.+|.++|..++ .|..+..........+..|.+.+.+....+++.|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 13 VLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEeccccHHHHHHHHh
Confidence 3456778888776 67766664332233445566665434444444443
No 349
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=21.27 E-value=3.4e+02 Score=20.34 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 024220 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 184 (270)
.+.++|.+....+|...-++.....-.|.+-+...+.++...|+..+.+
T Consensus 15 ~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~ 63 (172)
T PF02222_consen 15 DSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGG 63 (172)
T ss_dssp SSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCC
Confidence 4677999999999977666655555455677778899999999998843
No 350
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=21.16 E-value=2.4e+02 Score=20.67 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=34.3
Q ss_pred eEEEcCCCC-CCCHHHHHHHhhc-ccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 8 TIYVGNLPS-DIREYEVEDLFYK-YGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 8 ~l~v~nl~~-~~t~~~L~~~F~~-~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
-+|+++|-. ..+-++|...... |++ +.++.... -..-+-+.|+|.-+-+|..-+..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~-~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRK-VEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeec-cccCceEEEEEechHHHHHHHHHHh
Confidence 356777752 1344555555554 332 23343322 2335679999999999998877653
No 351
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.00 E-value=78 Score=18.70 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=8.6
Q ss_pred CCcEEEEEECC
Q 024220 44 PPCYCFVEFEN 54 (270)
Q Consensus 44 ~~g~afV~f~~ 54 (270)
.+|||||...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 48999999887
No 352
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.60 E-value=1.5e+02 Score=21.86 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=18.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~ 29 (270)
.-+.|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35778999999988888888764
No 353
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=1.1e+02 Score=24.72 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=16.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHH
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHM 145 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f 145 (270)
-..++.|-+.++|..+.--.|+...
T Consensus 124 ik~GN~lpL~~IP~Gt~VhNVE~~p 148 (275)
T COG0090 124 IKPGNALPLGNIPEGTIVHNVELKP 148 (275)
T ss_pred cCCcceeeeccCCCCceEEeeeecc
Confidence 3456888899998877544444333
No 354
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.37 E-value=28 Score=32.37 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=17.9
Q ss_pred CCcEEEEEECCHHHHHHHHH
Q 024220 44 PPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~ 63 (270)
..|||||+|..+.++..|+.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQ 399 (893)
T ss_pred cCceEEEEeccCCCceEEEE
Confidence 47999999999999999886
No 355
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=20.35 E-value=4.2e+02 Score=24.67 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEEECCHHHHHHHHHhcCCc-cccC-------------------------eeEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 024220 48 CFVEFENARDAEDAIRGRDGY-NFDG-------------------------CRLRVELAHGGSGRGPSSSDRRGGYGGGG 101 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~-~~~g-------------------------~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (270)
||+++.+++.-+-..+.|+.. .+.| ..|.++
T Consensus 239 c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~le----------------------- 295 (618)
T PRK05192 239 CYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLE----------------------- 295 (618)
T ss_pred CCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEe-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 024220 102 AGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
+.......+|+.++..++.++...++|.....++.+++++ +|+..-.+.-+...--..
T Consensus 296 -----------------peg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r-----~gy~ieyd~i~p~~L~~~ 353 (618)
T PRK05192 296 -----------------PEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILR-----PGYAIEYDYVDPRQLKPT 353 (618)
T ss_pred -----------------cCCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEee-----cccceeecccChhhcchh
Q ss_pred cCCccccCcccccce
Q 024220 182 LDDTEFRNPWARGRI 196 (270)
Q Consensus 182 l~g~~~~~~~~~~~i 196 (270)
|.-+.+. +-.+
T Consensus 354 Le~k~~~----~lf~ 364 (618)
T PRK05192 354 LETKKIK----GLFF 364 (618)
T ss_pred heecCCC----CeEE
No 356
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=20.27 E-value=6.1e+02 Score=24.72 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---ccceEEEEEecCCCCCcEEE-EEECCHHHHHHHHHhc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l 65 (270)
..+|.|+-||..++.+.|.+-... -|.|. |.-..+....+.-| |++....++...+..|
T Consensus 241 ~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 241 KKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHH
Confidence 568999999999888887665532 34444 32223322244555 4455444555554443
No 357
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.07 E-value=56 Score=29.92 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=50.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+||+.|--...++.-+...+..++++....+.. .+...+-+|++|+.+..|..|.. |.+..+..+.+++.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSH 585 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceecc
Confidence 677777777777777888888888777766633 23334579999999999988877 77776666655553
Done!