Query 024220
Match_columns 270
No_of_seqs 290 out of 2589
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 6.6E-36 2.3E-40 232.9 16.6 164 3-203 12-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.3E-34 4.5E-39 223.3 19.7 193 4-200 2-203 (205)
3 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-34 1.1E-38 215.3 19.8 160 5-201 2-168 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 4E-34 1.4E-38 214.3 19.5 159 7-202 1-165 (166)
5 1fxl_A Paraneoplastic encephal 100.0 6.7E-34 2.3E-38 213.3 20.2 157 5-200 1-166 (167)
6 3pgw_A U1-A; protein-RNA compl 100.0 4.9E-33 1.7E-37 226.0 25.0 196 3-202 6-281 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 9.9E-34 3.4E-38 218.0 19.3 166 4-204 11-183 (196)
8 3nmr_A Cugbp ELAV-like family 100.0 1.2E-33 4E-38 213.6 18.4 163 5-202 2-175 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 8.1E-33 2.8E-37 217.8 22.7 195 3-203 31-227 (229)
10 2qfj_A FBP-interacting repress 100.0 3.7E-33 1.3E-37 218.0 19.4 172 5-204 27-205 (216)
11 1qm9_A Polypyrimidine tract-bi 100.0 5.2E-33 1.8E-37 214.3 19.6 192 6-203 3-196 (198)
12 2yh0_A Splicing factor U2AF 65 100.0 3.5E-32 1.2E-36 209.6 23.0 178 4-204 2-194 (198)
13 2g4b_A Splicing factor U2AF 65 100.0 1.1E-32 3.6E-37 207.8 19.4 155 4-201 2-171 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 2.1E-33 7.1E-38 212.3 12.2 162 3-203 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 4E-33 1.4E-37 209.2 13.2 158 4-203 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 8.1E-32 2.8E-36 216.1 17.8 156 4-203 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 2.9E-31 1E-35 215.7 18.8 165 4-204 93-264 (284)
18 3smz_A Protein raver-1, ribonu 100.0 1.1E-30 3.7E-35 212.4 20.2 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-31 2.7E-35 214.0 17.4 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 2E-30 6.8E-35 211.6 18.3 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.3E-25 4.5E-30 157.2 10.0 109 5-140 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 8.6E-23 2.9E-27 173.9 20.0 82 4-85 100-184 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-23 7.2E-28 141.6 9.7 78 5-82 18-98 (99)
24 3lqv_A PRE-mRNA branch site pr 99.9 3.8E-23 1.3E-27 144.8 8.9 106 2-150 4-109 (115)
25 2lxi_A RNA-binding protein 10; 99.9 8.3E-23 2.8E-27 136.6 7.2 80 6-85 1-85 (91)
26 1x4a_A Splicing factor, argini 99.9 6.9E-22 2.4E-26 137.0 12.1 81 3-83 19-99 (109)
27 3pgw_S U1-70K; protein-RNA com 99.9 2.1E-22 7.1E-27 171.5 11.2 76 123-202 101-180 (437)
28 1sjq_A Polypyrimidine tract-bi 99.9 3.4E-22 1.1E-26 135.4 9.9 82 2-86 12-95 (105)
29 3r27_A HnRNP L, heterogeneous 99.9 5.1E-22 1.7E-26 133.1 10.5 78 3-83 18-97 (100)
30 2hvz_A Splicing factor, argini 99.9 2.6E-22 8.9E-27 137.2 8.9 76 7-84 1-76 (101)
31 2wbr_A GW182, gawky, LD47780P; 99.9 4.5E-22 1.6E-26 128.4 9.1 75 4-81 5-79 (89)
32 2i2y_A Fusion protein consists 99.9 1.8E-21 6.2E-26 142.8 13.6 138 42-204 10-148 (150)
33 2kn4_A Immunoglobulin G-bindin 99.9 2.8E-21 9.4E-26 143.1 14.6 138 42-205 10-151 (158)
34 2fy1_A RNA-binding motif prote 99.9 2.6E-21 8.9E-26 135.3 13.6 84 1-84 2-87 (116)
35 3s8s_A Histone-lysine N-methyl 99.9 6.3E-22 2.2E-26 136.8 10.0 81 3-83 3-86 (110)
36 2dgu_A Heterogeneous nuclear r 99.9 3.3E-21 1.1E-25 132.2 13.1 79 4-87 9-87 (103)
37 1whw_A Hypothetical protein ri 99.9 2.8E-21 9.6E-26 131.6 12.5 83 3-85 5-90 (99)
38 2dnz_A Probable RNA-binding pr 99.9 3.5E-21 1.2E-25 130.1 12.8 82 3-84 2-86 (95)
39 2dgo_A Cytotoxic granule-assoc 99.9 4E-21 1.4E-25 134.5 13.3 83 4-86 13-98 (115)
40 2a3j_A U1 small nuclear ribonu 99.9 1.3E-21 4.5E-26 138.3 10.8 81 3-83 26-110 (127)
41 2cpf_A RNA binding motif prote 99.9 1.8E-21 6.1E-26 132.3 10.6 82 3-84 2-89 (98)
42 2dgs_A DAZ-associated protein 99.9 5.7E-21 2E-25 130.0 12.8 82 3-85 7-91 (99)
43 2ad9_A Polypyrimidine tract-bi 99.9 1.8E-21 6.1E-26 135.1 10.3 81 3-86 28-110 (119)
44 1x4d_A Matrin 3; structural ge 99.9 1E-21 3.6E-26 133.0 8.8 78 3-83 12-92 (102)
45 2cqi_A Nucleolysin TIAR; RNA r 99.9 6.1E-21 2.1E-25 130.9 12.8 82 3-84 12-94 (103)
46 2cq1_A PTB-like protein L; RRM 99.9 5.1E-21 1.7E-25 129.7 12.2 80 3-85 12-93 (101)
47 1wex_A Hypothetical protein (r 99.9 3.8E-21 1.3E-25 131.2 11.5 80 3-85 12-93 (104)
48 2x1f_A MRNA 3'-END-processing 99.9 2.4E-21 8.3E-26 131.1 10.5 79 5-83 1-82 (96)
49 2cqd_A RNA-binding region cont 99.9 1E-20 3.5E-25 132.6 14.0 80 3-83 14-96 (116)
50 2do0_A HnRNP M, heterogeneous 99.9 7.9E-21 2.7E-25 132.8 13.4 83 3-85 12-96 (114)
51 2d9p_A Polyadenylate-binding p 99.9 3.7E-21 1.3E-25 131.9 11.5 83 3-85 12-95 (103)
52 2cq0_A Eukaryotic translation 99.9 2.4E-21 8.2E-26 132.9 10.4 82 4-85 13-97 (103)
53 3md1_A Nuclear and cytoplasmic 99.9 2.9E-21 9.9E-26 127.1 10.3 78 6-83 1-81 (83)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.1E-26 128.1 9.7 79 3-81 4-85 (85)
55 2lkz_A RNA-binding protein 5; 99.9 5.1E-22 1.8E-26 133.2 6.5 78 5-82 8-94 (95)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.3E-26 132.6 10.1 82 4-85 10-94 (102)
57 2dgx_A KIAA0430 protein; RRM d 99.9 4.4E-21 1.5E-25 129.7 11.0 80 4-83 7-90 (96)
58 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.1E-21 7.1E-26 129.0 9.1 80 4-83 4-86 (87)
59 1x5t_A Splicing factor 3B subu 99.9 3.6E-21 1.2E-25 130.3 10.4 82 3-84 2-87 (96)
60 1nu4_A U1A RNA binding domain; 99.9 1E-21 3.4E-26 133.3 7.7 83 1-83 3-89 (97)
61 1x5u_A Splicing factor 3B subu 99.9 6.6E-21 2.2E-25 131.2 11.8 81 4-84 13-96 (105)
62 2dnm_A SRP46 splicing factor; 99.9 2.8E-21 9.5E-26 132.6 9.9 81 4-84 11-94 (103)
63 2e5h_A Zinc finger CCHC-type a 99.9 5.2E-21 1.8E-25 129.0 11.0 78 4-81 14-94 (94)
64 2do4_A Squamous cell carcinoma 99.9 5.4E-21 1.8E-25 130.4 10.9 81 4-84 15-97 (100)
65 2cq3_A RNA-binding protein 9; 99.9 1.3E-20 4.4E-25 129.2 12.8 82 4-85 13-95 (103)
66 2dgv_A HnRNP M, heterogeneous 99.9 4.8E-21 1.6E-25 128.6 10.4 81 3-83 5-86 (92)
67 1x5s_A Cold-inducible RNA-bind 99.9 5.1E-21 1.7E-25 131.0 10.4 82 3-84 9-93 (102)
68 2cpz_A CUG triplet repeat RNA- 99.9 4.5E-21 1.5E-25 134.2 10.3 82 4-85 23-107 (115)
69 2dnq_A RNA-binding protein 4B; 99.8 1.1E-20 3.9E-25 126.2 11.7 77 3-84 5-81 (90)
70 4a8x_A RNA-binding protein wit 99.8 6E-21 2E-25 127.1 10.1 80 4-83 2-85 (88)
71 2cph_A RNA binding motif prote 99.8 1.2E-20 4.2E-25 130.3 11.9 82 3-84 12-98 (107)
72 2cqc_A Arginine/serine-rich sp 99.8 4.7E-21 1.6E-25 129.4 9.4 79 4-82 13-94 (95)
73 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-20 3.9E-25 129.7 11.3 80 3-84 12-95 (104)
74 1p27_B RNA-binding protein 8A; 99.8 4.8E-21 1.6E-25 132.1 9.4 80 4-83 21-103 (106)
75 1why_A Hypothetical protein ri 99.8 1.2E-20 4E-25 127.9 11.0 77 4-83 15-93 (97)
76 2dnh_A Bruno-like 5, RNA bindi 99.8 1E-20 3.5E-25 130.2 10.9 82 4-85 13-99 (105)
77 1x4c_A Splicing factor, argini 99.8 2.7E-20 9.2E-25 128.6 12.9 77 4-84 13-94 (108)
78 1x4h_A RNA-binding protein 28; 99.8 1.6E-20 5.3E-25 130.7 11.7 81 4-84 13-102 (111)
79 2dgt_A RNA-binding protein 30; 99.8 2E-20 6.8E-25 125.5 11.8 77 3-84 7-83 (92)
80 2ywk_A Putative RNA-binding pr 99.8 7.2E-21 2.5E-25 128.5 9.2 80 3-82 13-94 (95)
81 2jrs_A RNA-binding protein 39; 99.8 8.8E-21 3E-25 130.9 9.6 81 3-83 23-106 (108)
82 2kxn_B Transformer-2 protein h 99.8 7.7E-21 2.6E-25 135.3 9.6 81 3-83 43-126 (129)
83 2div_A TRNA selenocysteine ass 99.8 7.7E-21 2.6E-25 129.4 9.2 82 2-83 5-94 (99)
84 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-20 5.5E-25 129.5 10.7 82 3-84 10-97 (106)
85 1s79_A Lupus LA protein; RRM, 99.8 9.2E-21 3.1E-25 129.3 9.2 78 4-82 9-88 (103)
86 1oo0_B CG8781-PA, drosophila Y 99.8 1E-20 3.4E-25 131.4 9.6 80 4-83 24-106 (110)
87 2dnp_A RNA-binding protein 14; 99.8 2.2E-20 7.5E-25 124.8 10.8 76 3-83 6-81 (90)
88 1x4f_A Matrin 3; structural ge 99.8 9.7E-21 3.3E-25 130.0 9.2 78 3-83 22-102 (112)
89 3p5t_L Cleavage and polyadenyl 99.8 1.4E-21 4.8E-26 130.5 4.9 78 7-84 2-84 (90)
90 2cpi_A CCR4-NOT transcription 99.8 6.9E-21 2.4E-25 132.3 8.4 81 4-84 13-102 (111)
91 2dng_A Eukaryotic translation 99.8 2.5E-20 8.5E-25 127.8 11.1 80 3-84 12-94 (103)
92 2khc_A Testis-specific RNP-typ 99.8 1.2E-20 4E-25 132.7 9.5 79 3-81 37-118 (118)
93 3ns6_A Eukaryotic translation 99.8 4.8E-21 1.6E-25 130.4 7.2 80 4-83 4-93 (100)
94 3ucg_A Polyadenylate-binding p 99.8 1.4E-20 4.8E-25 125.5 9.3 78 5-83 5-85 (89)
95 1x4g_A Nucleolysin TIAR; struc 99.8 3.9E-20 1.3E-24 128.1 11.7 78 4-84 23-100 (109)
96 2cpe_A RNA-binding protein EWS 99.8 1.9E-20 6.6E-25 130.6 10.2 82 4-85 13-105 (113)
97 3ulh_A THO complex subunit 4; 99.8 1.7E-20 6E-25 129.5 9.8 78 4-81 27-106 (107)
98 2ytc_A PRE-mRNA-splicing facto 99.8 2.3E-20 8E-25 123.3 9.8 76 3-81 9-85 (85)
99 2cpx_A Hypothetical protein FL 99.8 2.7E-20 9.1E-25 130.3 10.6 81 4-85 23-107 (115)
100 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.7E-20 9.4E-25 137.4 11.2 82 4-85 37-121 (156)
101 2xnq_A Nuclear polyadenylated 99.8 3.7E-20 1.3E-24 125.2 10.9 76 3-83 19-95 (97)
102 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-20 4.4E-25 129.8 8.6 79 4-83 26-105 (111)
103 2err_A Ataxin-2-binding protei 99.8 1.5E-20 5E-25 130.1 8.9 80 4-83 27-107 (109)
104 2cpj_A Non-POU domain-containi 99.8 2.8E-20 9.6E-25 126.6 10.2 77 4-83 13-89 (99)
105 2dis_A Unnamed protein product 99.8 5.2E-20 1.8E-24 127.6 11.7 83 3-85 5-94 (109)
106 3s7r_A Heterogeneous nuclear r 99.8 3.3E-20 1.1E-24 123.2 10.2 77 3-80 8-87 (87)
107 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.8E-25 133.5 9.4 81 4-84 20-103 (126)
108 2fc9_A NCL protein; structure 99.8 2.9E-20 9.9E-25 127.0 10.2 79 4-83 13-91 (101)
109 2nlw_A Eukaryotic translation 99.8 1.9E-20 6.6E-25 128.6 9.2 80 4-83 13-100 (105)
110 2la6_A RNA-binding protein FUS 99.8 2.1E-20 7.1E-25 127.2 9.2 78 4-81 11-99 (99)
111 2jvo_A Nucleolar protein 3; nu 99.8 3E-20 1E-24 128.1 9.9 75 4-83 29-103 (108)
112 3beg_B Splicing factor, argini 99.8 9.6E-21 3.3E-25 132.3 7.5 74 122-202 14-92 (115)
113 1u6f_A Tcubp1, RNA-binding pro 99.8 6E-20 2.1E-24 132.9 11.7 81 4-84 40-123 (139)
114 2krb_A Eukaryotic translation 99.8 1E-20 3.5E-25 123.8 6.9 72 6-77 1-80 (81)
115 2rs2_A Musashi-1, RNA-binding 99.8 6.6E-20 2.3E-24 126.8 11.3 80 4-84 23-105 (109)
116 2dhg_A TRNA selenocysteine ass 99.8 3.9E-20 1.3E-24 127.1 10.1 82 3-84 6-91 (104)
117 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-19 3.8E-24 123.6 12.1 76 4-84 13-90 (99)
118 2cq2_A Hypothetical protein LO 99.8 3.2E-20 1.1E-24 127.4 9.4 80 2-84 21-107 (114)
119 1fjc_A Nucleolin RBD2, protein 99.8 2E-20 6.8E-25 126.6 8.1 78 4-83 14-91 (96)
120 2la4_A Nuclear and cytoplasmic 99.8 2.2E-20 7.6E-25 127.6 8.3 76 4-82 25-100 (101)
121 2dh8_A DAZ-associated protein 99.8 2.5E-20 8.5E-25 128.3 8.4 81 3-84 13-96 (105)
122 1whx_A Hypothetical protein ri 99.8 3.1E-20 1.1E-24 128.8 8.9 77 4-83 8-84 (111)
123 1x4e_A RNA binding motif, sing 99.8 6.7E-21 2.3E-25 125.9 5.2 79 3-81 2-83 (85)
124 2kvi_A Nuclear polyadenylated 99.8 2.9E-20 9.9E-25 125.7 8.4 75 4-83 8-83 (96)
125 1x4c_A Splicing factor, argini 99.8 2.4E-19 8.4E-24 123.8 13.3 80 121-203 12-92 (108)
126 2cqh_A IGF-II mRNA-binding pro 99.8 4.1E-20 1.4E-24 124.2 9.0 78 3-84 5-84 (93)
127 3n9u_C Cleavage and polyadenyl 99.8 3.7E-20 1.3E-24 136.0 9.4 79 5-83 54-137 (156)
128 2e5j_A Methenyltetrahydrofolat 99.8 3.4E-20 1.2E-24 125.6 8.6 78 4-83 17-94 (97)
129 1p1t_A Cleavage stimulation fa 99.8 1.7E-20 6E-25 128.8 7.1 80 4-83 6-88 (104)
130 2diu_A KIAA0430 protein; struc 99.8 1.4E-19 4.7E-24 117.9 10.8 75 4-85 6-86 (96)
131 2kt5_A RNA and export factor-b 99.8 1.3E-19 4.4E-24 128.5 11.6 81 4-84 33-115 (124)
132 2fc8_A NCL protein; structure 99.8 5.6E-20 1.9E-24 125.8 9.3 80 4-83 13-92 (102)
133 2cqp_A RNA-binding protein 12; 99.8 2.3E-20 7.8E-25 126.8 7.2 80 4-83 13-95 (98)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-20 9.9E-25 126.6 7.3 78 4-83 17-98 (100)
135 2ek1_A RNA-binding protein 12; 99.8 1.8E-20 6.1E-25 126.6 6.1 78 4-81 13-93 (95)
136 2mss_A Protein (musashi1); RNA 99.8 2.7E-20 9.1E-25 120.0 6.7 72 8-80 1-75 (75)
137 2cqg_A TDP-43, TAR DNA-binding 99.8 2.3E-19 7.9E-24 122.9 11.7 80 3-84 12-94 (103)
138 3egn_A RNA-binding protein 40; 99.8 3.5E-20 1.2E-24 134.8 7.7 83 3-85 42-132 (143)
139 2dgw_A Probable RNA-binding pr 99.8 1.3E-19 4.6E-24 121.2 10.0 78 4-83 8-87 (91)
140 2m2b_A RNA-binding protein 10; 99.8 5.8E-20 2E-24 131.4 8.6 81 3-84 20-109 (131)
141 1wf1_A RNA-binding protein RAL 99.8 8.8E-20 3E-24 126.5 9.1 74 5-83 26-100 (110)
142 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.8E-24 133.1 11.5 81 4-84 68-151 (158)
143 2jwn_A Embryonic polyadenylate 99.8 9.7E-20 3.3E-24 129.2 9.3 78 5-83 35-115 (124)
144 2lea_A Serine/arginine-rich sp 99.8 4.4E-20 1.5E-24 132.5 7.5 80 4-83 45-127 (135)
145 1x4b_A Heterogeneous nuclear r 99.8 1.8E-19 6.2E-24 126.2 10.3 79 5-84 26-107 (116)
146 2cq4_A RNA binding motif prote 99.8 9E-20 3.1E-24 127.4 8.5 78 5-83 24-104 (114)
147 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.7E-19 6E-24 130.7 10.4 77 4-80 61-140 (140)
148 1wg5_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 122.5 10.8 79 4-83 13-94 (104)
149 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.8E-20 1.3E-24 119.9 5.9 73 7-80 1-76 (77)
150 2e5g_A U6 snRNA-specific termi 99.8 3.5E-19 1.2E-23 119.8 10.9 77 4-83 6-82 (94)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.7E-24 135.3 9.1 81 4-84 70-153 (165)
152 2ki2_A SS-DNA binding protein 99.8 2.5E-20 8.7E-25 124.5 4.8 76 7-83 2-80 (90)
153 1wg1_A KIAA1579 protein, homol 99.8 1.1E-19 3.7E-24 120.8 7.8 77 3-83 2-78 (88)
154 1fj7_A Nucleolin RBD1, protein 99.8 2.9E-20 1E-24 127.0 5.2 79 4-83 15-95 (101)
155 1x5o_A RNA binding motif, sing 99.8 2.1E-19 7.3E-24 125.5 9.6 80 4-83 23-112 (114)
156 1x5p_A Negative elongation fac 99.8 7.7E-19 2.6E-23 118.9 11.9 76 4-84 13-88 (97)
157 2i2y_A Fusion protein consists 99.8 2E-19 7E-24 131.8 9.7 78 4-83 71-148 (150)
158 3beg_B Splicing factor, argini 99.8 2.5E-19 8.5E-24 125.1 9.4 76 4-83 14-94 (115)
159 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 126.4 7.8 79 4-83 13-94 (114)
160 1sjr_A Polypyrimidine tract-bi 99.8 7.5E-19 2.6E-23 128.0 11.9 77 7-84 47-125 (164)
161 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-19 7E-24 122.6 8.2 78 4-83 13-92 (102)
162 3zzy_A Polypyrimidine tract-bi 99.8 5.4E-19 1.9E-23 124.1 10.3 74 8-83 30-106 (130)
163 2e44_A Insulin-like growth fac 99.8 4.5E-19 1.6E-23 119.8 9.5 79 4-83 13-92 (96)
164 2db1_A Heterogeneous nuclear r 99.8 1.4E-19 4.8E-24 126.9 6.9 79 4-83 15-98 (118)
165 1iqt_A AUF1, heterogeneous nuc 99.8 8.8E-20 3E-24 117.5 5.1 72 8-80 1-75 (75)
166 2f3j_A RNA and export factor b 99.8 4.2E-19 1.4E-23 133.2 9.5 80 4-83 86-167 (177)
167 2hgl_A HNRPF protein, heteroge 99.8 1.9E-19 6.5E-24 128.6 6.9 78 4-82 42-124 (136)
168 1wel_A RNA-binding protein 12; 99.8 3.1E-19 1.1E-23 126.4 7.3 79 4-83 23-104 (124)
169 2e5i_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 120.1 12.0 77 5-84 22-103 (124)
170 2dnn_A RNA-binding protein 12; 99.8 9.2E-19 3.1E-23 120.3 9.4 76 5-82 15-92 (109)
171 2hzc_A Splicing factor U2AF 65 99.8 8.4E-19 2.9E-23 116.3 8.8 73 3-79 3-86 (87)
172 3q2s_C Cleavage and polyadenyl 99.8 3.5E-19 1.2E-23 139.1 7.8 78 5-82 67-149 (229)
173 2lmi_A GRSF-1, G-rich sequence 99.8 3.1E-19 1E-23 123.0 5.7 80 3-83 8-92 (107)
174 1wf0_A TDP-43, TAR DNA-binding 99.8 9E-19 3.1E-23 116.4 7.4 78 3-84 2-79 (88)
175 3d2w_A TAR DNA-binding protein 99.8 2.9E-18 9.8E-23 113.9 9.5 74 4-83 9-84 (89)
176 2lcw_A RNA-binding protein FUS 99.6 3.4E-20 1.2E-24 129.9 0.0 81 3-83 4-95 (116)
177 2lea_A Serine/arginine-rich sp 99.8 1.2E-18 4.2E-23 125.0 7.8 121 45-205 4-128 (135)
178 2dha_A FLJ20171 protein; RRM d 99.8 6.7E-19 2.3E-23 123.5 6.1 79 3-82 20-104 (123)
179 2hgn_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 127.2 4.9 78 4-83 44-123 (139)
180 2bz2_A Negative elongation fac 99.8 2.9E-18 1E-22 120.5 9.1 75 4-83 37-111 (121)
181 2hgm_A HNRPF protein, heteroge 99.8 1.4E-18 4.8E-23 122.1 7.3 77 4-82 40-120 (126)
182 2xs2_A Deleted in azoospermia- 99.7 7.4E-19 2.5E-23 120.2 4.9 78 4-83 7-86 (102)
183 2pe8_A Splicing factor 45; RRM 99.7 9.5E-18 3.3E-22 114.5 10.3 80 3-82 5-93 (105)
184 2dnl_A Cytoplasmic polyadenyla 99.7 1E-17 3.5E-22 116.7 10.7 74 4-80 6-85 (114)
185 2jvr_A Nucleolar protein 3; RN 99.7 5.6E-18 1.9E-22 116.6 9.0 81 122-206 26-107 (111)
186 2fy1_A RNA-binding motif prote 99.7 5.2E-17 1.8E-21 113.4 13.9 80 122-205 5-87 (116)
187 1x4a_A Splicing factor, argini 99.7 8.6E-17 2.9E-21 111.2 14.0 83 119-205 17-100 (109)
188 3md3_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 124.4 10.3 78 4-81 85-165 (166)
189 4f02_A Polyadenylate-binding p 99.7 7.6E-18 2.6E-22 130.7 9.6 79 5-83 102-181 (213)
190 4fxv_A ELAV-like protein 1; RN 99.7 1.7E-17 5.8E-22 112.4 10.0 76 123-202 18-97 (99)
191 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.4E-21 111.4 14.1 83 119-205 20-106 (115)
192 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.7E-17 5.8E-22 123.4 10.0 136 50-204 11-152 (165)
193 2qfj_A FBP-interacting repress 99.7 2E-17 7E-22 128.5 10.9 80 4-83 123-205 (216)
194 3ex7_B RNA-binding protein 8A; 99.7 2E-17 6.9E-22 117.5 9.8 82 120-205 18-103 (126)
195 3u1l_A PRE-mRNA-splicing facto 99.7 1E-17 3.5E-22 130.2 8.8 77 4-83 132-229 (240)
196 1fje_B Nucleolin RBD12, protei 99.7 1.4E-17 4.9E-22 125.2 9.3 78 4-83 97-174 (175)
197 2j8a_A Histone-lysine N-methyl 99.7 8.4E-18 2.9E-22 115.8 6.4 77 7-83 3-96 (136)
198 2dit_A HIV TAT specific factor 99.7 4.2E-17 1.4E-21 113.2 10.0 79 4-83 13-102 (112)
199 2yh0_A Splicing factor U2AF 65 99.7 2.7E-17 9.1E-22 126.1 9.3 80 4-83 112-194 (198)
200 2cqi_A Nucleolysin TIAR; RNA r 99.7 3E-16 1E-20 107.3 13.5 83 120-206 11-95 (103)
201 2cjk_A Nuclear polyadenylated 99.7 1.7E-17 6E-22 123.7 7.8 78 5-83 86-166 (167)
202 2g4b_A Splicing factor U2AF 65 99.7 2E-17 6.9E-22 123.9 8.2 76 5-80 93-171 (172)
203 2dgo_A Cytotoxic granule-assoc 99.7 5.8E-16 2E-20 108.1 14.8 85 119-207 10-98 (115)
204 2do4_A Squamous cell carcinoma 99.7 2.4E-16 8.1E-21 107.2 12.4 83 119-205 12-97 (100)
205 2d9p_A Polyadenylate-binding p 99.7 1.6E-16 5.5E-21 108.7 11.5 83 120-206 11-95 (103)
206 2e5j_A Methenyltetrahydrofolat 99.7 2.4E-16 8.1E-21 106.5 12.2 80 120-204 15-94 (97)
207 2do0_A HnRNP M, heterogeneous 99.7 4.5E-16 1.5E-20 108.5 13.9 81 121-205 12-95 (114)
208 1l3k_A Heterogeneous nuclear r 99.7 5E-17 1.7E-21 124.4 9.8 80 5-85 103-185 (196)
209 2cq3_A RNA-binding protein 9; 99.7 3.8E-16 1.3E-20 106.7 13.1 83 119-205 10-94 (103)
210 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 107.5 10.4 76 122-203 14-91 (105)
211 2voo_A Lupus LA protein; RNA-b 99.7 8E-17 2.7E-21 122.5 10.1 77 6-83 109-187 (193)
212 1x5u_A Splicing factor 3B subu 99.7 4.8E-16 1.6E-20 106.7 12.9 81 120-204 11-95 (105)
213 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.6E-21 102.5 9.7 73 124-202 7-79 (89)
214 1b7f_A Protein (SXL-lethal pro 99.7 8.7E-17 3E-21 119.9 9.9 77 4-80 87-168 (168)
215 2cq0_A Eukaryotic translation 99.7 2.7E-16 9.1E-21 107.5 11.5 83 120-206 11-97 (103)
216 2dnh_A Bruno-like 5, RNA bindi 99.7 5.3E-16 1.8E-20 106.4 12.9 82 122-207 13-100 (105)
217 4f25_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 111.4 9.6 76 124-203 5-82 (115)
218 2dnm_A SRP46 splicing factor; 99.7 3.3E-16 1.1E-20 107.1 11.5 82 120-205 9-94 (103)
219 3nmr_A Cugbp ELAV-like family 99.7 8.7E-17 3E-21 120.7 9.3 77 5-81 94-175 (175)
220 2e5h_A Zinc finger CCHC-type a 99.7 2.6E-16 8.8E-21 105.8 10.3 79 120-202 12-94 (94)
221 1whw_A Hypothetical protein ri 99.7 5.7E-16 1.9E-20 105.1 12.1 80 123-206 7-90 (99)
222 3s8s_A Histone-lysine N-methyl 99.7 2.2E-16 7.4E-21 108.9 10.1 77 123-203 5-85 (110)
223 2cph_A RNA binding motif prote 99.7 8.1E-16 2.8E-20 105.9 13.0 84 119-206 10-99 (107)
224 1x5s_A Cold-inducible RNA-bind 99.7 6.2E-16 2.1E-20 105.5 12.1 80 122-205 10-93 (102)
225 2ywk_A Putative RNA-binding pr 99.7 2.9E-16 9.9E-21 105.7 10.1 80 119-202 11-93 (95)
226 2dnq_A RNA-binding protein 4B; 99.7 8.6E-16 2.9E-20 102.3 12.3 77 122-206 6-82 (90)
227 2dnz_A Probable RNA-binding pr 99.7 7.6E-16 2.6E-20 103.6 12.1 80 123-206 4-87 (95)
228 2dgx_A KIAA0430 protein; RRM d 99.7 4.3E-16 1.5E-20 105.0 10.7 79 123-205 8-91 (96)
229 1x4d_A Matrin 3; structural ge 99.7 1.6E-16 5.6E-21 107.4 8.5 76 122-203 13-91 (102)
230 1fxl_A Paraneoplastic encephal 99.7 1.7E-16 5.7E-21 118.2 9.3 76 5-80 87-167 (167)
231 3pgw_A U1-A; protein-RNA compl 99.7 2.2E-16 7.6E-21 127.8 10.7 76 4-81 205-281 (282)
232 2hvz_A Splicing factor, argini 99.7 4.7E-16 1.6E-20 105.9 10.7 76 125-205 1-76 (101)
233 1wi8_A EIF-4B, eukaryotic tran 99.7 5.3E-16 1.8E-20 106.2 11.0 83 119-207 10-97 (104)
234 2dgs_A DAZ-associated protein 99.7 9.7E-16 3.3E-20 103.9 12.2 80 122-206 8-91 (99)
235 2cqc_A Arginine/serine-rich sp 99.7 6.4E-16 2.2E-20 104.0 11.2 80 119-202 10-93 (95)
236 3v4m_A Splicing factor U2AF 65 99.7 2E-16 6.7E-21 108.0 8.6 80 3-82 2-96 (105)
237 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-15 3.9E-20 105.0 12.5 82 120-205 9-97 (106)
238 3r27_A HnRNP L, heterogeneous 99.7 3.5E-16 1.2E-20 104.7 9.3 76 122-203 19-96 (100)
239 4a8x_A RNA-binding protein wit 99.7 3.4E-16 1.2E-20 103.8 9.3 78 124-205 4-86 (88)
240 1why_A Hypothetical protein ri 99.7 1.3E-15 4.6E-20 102.8 12.3 81 122-206 15-95 (97)
241 2dgt_A RNA-binding protein 30; 99.7 1.1E-15 3.6E-20 102.3 11.7 77 121-205 7-83 (92)
242 1x4h_A RNA-binding protein 28; 99.7 1.7E-15 5.8E-20 105.0 12.9 82 120-205 11-102 (111)
243 1x4f_A Matrin 3; structural ge 99.7 3.6E-16 1.2E-20 107.2 9.2 78 120-203 21-101 (112)
244 2dnp_A RNA-binding protein 14; 99.7 8E-16 2.7E-20 102.4 10.8 76 122-205 7-82 (90)
245 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.8E-16 1.6E-20 102.9 9.6 77 123-203 5-85 (87)
246 2kxn_B Transformer-2 protein h 99.7 5.4E-16 1.8E-20 110.2 10.4 82 120-205 42-127 (129)
247 2dgu_A Heterogeneous nuclear r 99.7 1.7E-15 5.9E-20 103.4 12.6 76 123-206 10-85 (103)
248 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.9E-16 2E-20 105.6 10.1 81 122-206 10-94 (102)
249 1x5t_A Splicing factor 3B subu 99.7 6.4E-16 2.2E-20 104.2 10.2 80 123-206 4-88 (96)
250 1wf1_A RNA-binding protein RAL 99.7 2.5E-15 8.7E-20 103.9 13.4 75 122-204 25-100 (110)
251 2dhg_A TRNA selenocysteine ass 99.7 2.2E-15 7.6E-20 103.1 12.9 80 122-205 7-91 (104)
252 2ad9_A Polypyrimidine tract-bi 99.7 7.2E-16 2.5E-20 106.9 10.5 79 120-204 27-107 (119)
253 2dng_A Eukaryotic translation 99.7 1.7E-15 5.7E-20 103.5 12.2 81 119-205 10-94 (103)
254 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.5E-21 121.4 8.3 78 4-83 118-197 (198)
255 2adc_A Polypyrimidine tract-bi 99.7 4.5E-16 1.5E-20 122.0 10.6 78 4-83 149-228 (229)
256 2lxi_A RNA-binding protein 10; 99.7 1.9E-16 6.6E-21 105.5 7.2 76 125-204 2-83 (91)
257 1wex_A Hypothetical protein (r 99.7 1.5E-15 5.2E-20 103.4 11.8 76 122-203 13-90 (104)
258 2e44_A Insulin-like growth fac 99.7 1.1E-15 3.7E-20 103.1 10.9 79 121-203 12-91 (96)
259 2cpj_A Non-POU domain-containi 99.7 1.8E-15 6.2E-20 102.6 12.0 78 122-205 13-90 (99)
260 1x4g_A Nucleolysin TIAR; struc 99.7 1.5E-15 5E-20 104.9 11.7 79 122-206 23-101 (109)
261 2cpf_A RNA binding motif prote 99.7 9.2E-16 3.1E-20 103.8 10.4 78 123-204 4-88 (98)
262 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.9E-16 2.4E-20 101.6 9.5 77 122-202 5-85 (85)
263 2lkz_A RNA-binding protein 5; 99.7 2.9E-16 1E-20 105.1 7.6 81 123-203 8-94 (95)
264 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-15 5.8E-20 101.3 11.4 79 122-204 6-86 (92)
265 2cq1_A PTB-like protein L; RRM 99.6 2.3E-15 7.7E-20 101.9 11.7 77 121-203 12-90 (101)
266 2jvo_A Nucleolar protein 3; nu 99.6 8E-16 2.7E-20 105.9 9.5 78 121-206 28-105 (108)
267 2cpx_A Hypothetical protein FL 99.6 4.7E-15 1.6E-19 103.4 13.6 81 122-206 23-107 (115)
268 2la6_A RNA-binding protein FUS 99.6 2.2E-15 7.4E-20 102.2 11.5 81 118-202 7-99 (99)
269 2cpd_A Apobec-1 stimulating pr 99.6 3.9E-15 1.3E-19 100.9 12.8 77 120-204 11-89 (99)
270 2cpe_A RNA-binding protein EWS 99.6 2.1E-15 7.1E-20 104.9 11.5 83 120-206 11-105 (113)
271 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.5E-15 1.2E-19 100.4 12.1 78 4-85 8-92 (100)
272 2x1f_A MRNA 3'-END-processing 99.6 1E-15 3.5E-20 103.2 9.6 77 124-204 2-82 (96)
273 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.9E-20 100.1 10.0 76 121-202 9-85 (85)
274 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5.3E-20 110.5 11.0 80 122-203 44-123 (164)
275 2dh8_A DAZ-associated protein 99.6 2.9E-15 1E-19 102.7 11.9 80 120-204 12-95 (105)
276 1p27_B RNA-binding protein 8A; 99.6 1.8E-15 6.1E-20 104.0 10.8 79 121-203 20-102 (106)
277 2khc_A Testis-specific RNP-typ 99.6 2.4E-15 8.3E-20 105.4 11.6 79 119-201 35-117 (118)
278 2cpi_A CCR4-NOT transcription 99.6 1.1E-15 3.6E-20 105.9 9.6 80 122-205 13-102 (111)
279 3md1_A Nuclear and cytoplasmic 99.6 1.6E-15 5.6E-20 99.3 10.0 76 125-204 2-81 (83)
280 3tyt_A Heterogeneous nuclear r 99.6 2.7E-16 9.3E-21 120.8 7.3 77 4-80 121-204 (205)
281 1u6f_A Tcubp1, RNA-binding pro 99.6 6.1E-15 2.1E-19 106.4 14.0 82 120-205 38-123 (139)
282 2jrs_A RNA-binding protein 39; 99.6 4.4E-15 1.5E-19 102.2 12.2 82 119-204 21-106 (108)
283 2cqp_A RNA-binding protein 12; 99.6 9.1E-16 3.1E-20 103.9 8.6 79 122-204 13-95 (98)
284 2div_A TRNA selenocysteine ass 99.6 2.8E-15 9.7E-20 101.6 11.1 79 122-204 7-94 (99)
285 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.8E-20 104.3 10.0 79 120-202 25-106 (107)
286 2cqd_A RNA-binding region cont 99.6 5.4E-15 1.8E-19 103.3 12.5 80 119-203 12-95 (116)
287 2err_A Ataxin-2-binding protei 99.6 1.4E-15 4.9E-20 104.9 9.3 80 120-203 25-106 (109)
288 2fc9_A NCL protein; structure 99.6 1.4E-15 4.9E-20 103.5 9.0 80 121-204 12-91 (101)
289 2hgl_A HNRPF protein, heteroge 99.6 9.3E-16 3.2E-20 109.5 8.2 80 118-202 38-123 (136)
290 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.3E-20 104.6 9.4 80 121-204 23-106 (110)
291 3p5t_L Cleavage and polyadenyl 99.6 8E-16 2.7E-20 102.4 7.3 77 125-205 2-84 (90)
292 2kvi_A Nuclear polyadenylated 99.6 1.9E-15 6.5E-20 101.8 9.1 75 121-203 7-82 (96)
293 1x5o_A RNA binding motif, sing 99.6 9.4E-15 3.2E-19 101.7 13.0 82 121-202 22-110 (114)
294 3ns6_A Eukaryotic translation 99.6 1E-15 3.5E-20 103.9 7.6 75 124-202 6-91 (100)
295 2a3j_A U1 small nuclear ribonu 99.6 4.4E-15 1.5E-19 104.7 11.1 79 122-204 27-110 (127)
296 2xnq_A Nuclear polyadenylated 99.6 3.8E-15 1.3E-19 100.4 10.0 77 119-203 17-94 (97)
297 3lqv_A PRE-mRNA branch site pr 99.6 4.2E-15 1.4E-19 103.6 10.5 78 122-203 6-84 (115)
298 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.8E-15 2E-19 108.7 11.6 79 122-204 37-119 (156)
299 1s79_A Lupus LA protein; RRM, 99.6 3.6E-15 1.2E-19 101.5 9.7 75 122-201 9-86 (103)
300 1wez_A HnRNP H', FTP-3, hetero 99.6 5.9E-15 2E-19 100.4 10.6 77 121-203 12-91 (102)
301 1x5p_A Negative elongation fac 99.6 1.5E-14 5.1E-19 97.6 12.6 78 121-206 12-89 (97)
302 1wg5_A Heterogeneous nuclear r 99.6 4.4E-15 1.5E-19 101.5 10.0 79 120-203 11-93 (104)
303 3tht_A Alkylated DNA repair pr 99.6 1.8E-15 6E-20 123.8 9.4 77 2-81 14-97 (345)
304 2dgw_A Probable RNA-binding pr 99.6 6.7E-15 2.3E-19 98.1 10.6 78 121-204 7-87 (91)
305 2m2b_A RNA-binding protein 10; 99.6 5.9E-15 2E-19 105.3 11.0 77 122-203 21-107 (131)
306 1x4e_A RNA binding motif, sing 99.6 8.8E-16 3E-20 101.1 6.1 75 123-201 4-82 (85)
307 2db1_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 105.3 8.6 79 119-202 12-96 (118)
308 2la4_A Nuclear and cytoplasmic 99.6 4.6E-15 1.6E-19 101.0 9.8 75 122-202 25-99 (101)
309 3ue2_A Poly(U)-binding-splicin 99.6 1.7E-15 5.7E-20 105.3 7.7 79 4-82 18-108 (118)
310 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-14 4E-19 105.1 12.5 78 120-201 59-140 (140)
311 2kt5_A RNA and export factor-b 99.6 3.5E-14 1.2E-18 100.3 14.6 80 120-203 31-113 (124)
312 1whx_A Hypothetical protein ri 99.6 1.9E-15 6.4E-20 104.6 7.8 75 123-203 9-83 (111)
313 2e5i_A Heterogeneous nuclear r 99.6 2.4E-14 8.1E-19 100.1 13.4 76 124-203 25-101 (124)
314 2hgn_A Heterogeneous nuclear r 99.6 6.6E-16 2.2E-20 110.6 5.4 78 121-204 43-123 (139)
315 2cqh_A IGF-II mRNA-binding pro 99.6 5.6E-15 1.9E-19 98.9 9.6 78 123-207 7-86 (93)
316 1jmt_A Splicing factor U2AF 35 99.6 4.5E-16 1.6E-20 106.1 3.6 69 12-80 21-103 (104)
317 2cq2_A Hypothetical protein LO 99.6 5E-15 1.7E-19 101.5 8.7 80 122-203 23-105 (114)
318 2cqg_A TDP-43, TAR DNA-binding 99.6 3.7E-14 1.3E-18 96.8 13.1 79 120-204 11-93 (103)
319 1wel_A RNA-binding protein 12; 99.6 4E-15 1.4E-19 105.1 8.4 78 120-202 21-102 (124)
320 3ucg_A Polyadenylate-binding p 99.6 1.1E-14 3.7E-19 96.7 9.9 75 124-203 6-84 (89)
321 2ek1_A RNA-binding protein 12; 99.6 2.1E-15 7.2E-20 101.5 6.5 76 123-202 14-93 (95)
322 2cq4_A RNA binding motif prote 99.6 6.6E-15 2.3E-19 102.5 9.2 75 123-202 24-102 (114)
323 2dnn_A RNA-binding protein 12; 99.6 5.8E-15 2E-19 101.3 8.6 75 122-202 14-91 (109)
324 3n9u_C Cleavage and polyadenyl 99.6 9.6E-15 3.3E-19 107.0 10.3 76 123-202 54-135 (156)
325 2nlw_A Eukaryotic translation 99.6 8.9E-15 3.1E-19 100.2 9.5 77 123-203 14-99 (105)
326 2mss_A Protein (musashi1); RNA 99.6 4.5E-15 1.6E-19 95.2 7.5 71 126-201 1-75 (75)
327 2krb_A Eukaryotic translation 99.6 3.7E-15 1.3E-19 97.1 7.2 70 125-198 2-80 (81)
328 1p1t_A Cleavage stimulation fa 99.6 1.2E-14 4E-19 99.5 9.9 78 123-204 7-88 (104)
329 2fc8_A NCL protein; structure 99.6 1.1E-14 3.9E-19 99.2 9.7 80 120-206 11-94 (102)
330 1x4b_A Heterogeneous nuclear r 99.6 1.9E-14 6.3E-19 100.5 10.9 78 123-205 26-107 (116)
331 3zzy_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 103.2 8.6 79 122-203 26-105 (130)
332 2jwn_A Embryonic polyadenylate 99.6 1.2E-14 4E-19 102.8 9.8 77 123-204 35-115 (124)
333 2diu_A KIAA0430 protein; struc 99.6 1.9E-14 6.4E-19 93.7 9.7 69 126-204 11-84 (96)
334 3s7r_A Heterogeneous nuclear r 99.6 1.8E-14 6E-19 95.2 9.8 75 122-201 9-87 (87)
335 2cpy_A RNA-binding protein 12; 99.6 5.9E-15 2E-19 102.6 7.8 77 121-202 12-92 (114)
336 2e5g_A U6 snRNA-specific termi 99.6 3.3E-14 1.1E-18 95.3 11.2 74 123-203 7-81 (94)
337 3s6e_A RNA-binding protein 39; 99.6 1.1E-14 3.8E-19 100.5 9.0 77 4-81 5-91 (114)
338 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.4E-15 1.5E-19 100.8 6.8 79 119-203 14-97 (100)
339 3sde_A Paraspeckle component 1 99.6 9.5E-15 3.3E-19 116.7 9.3 80 4-83 94-179 (261)
340 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.3E-15 2.8E-19 94.5 7.3 72 125-201 1-76 (77)
341 1nu4_A U1A RNA binding domain; 99.6 6.8E-15 2.3E-19 99.3 7.1 80 121-204 5-89 (97)
342 2ki2_A SS-DNA binding protein 99.6 5.6E-15 1.9E-19 98.3 6.3 74 125-203 2-79 (90)
343 2dis_A Unnamed protein product 99.6 6.6E-14 2.3E-18 96.5 12.0 78 123-204 7-92 (109)
344 1fjc_A Nucleolin RBD2, protein 99.6 1E-14 3.4E-19 98.3 7.6 78 121-203 13-90 (96)
345 1fj7_A Nucleolin RBD1, protein 99.6 3E-14 1E-18 96.9 9.7 77 122-204 15-95 (101)
346 2hgm_A HNRPF protein, heteroge 99.5 1.5E-14 5.1E-19 101.6 8.2 77 120-202 38-119 (126)
347 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.5E-19 100.2 7.3 77 121-202 8-90 (107)
348 2rs2_A Musashi-1, RNA-binding 99.5 2.7E-14 9.3E-19 98.4 9.2 79 121-204 22-104 (109)
349 2f3j_A RNA and export factor b 99.5 4.2E-14 1.4E-18 105.9 10.5 78 121-202 85-165 (177)
350 2hzc_A Splicing factor U2AF 65 99.5 3.6E-14 1.2E-18 93.7 8.8 71 123-200 5-86 (87)
351 3q2s_C Cleavage and polyadenyl 99.5 3.1E-14 1.1E-18 111.1 9.8 76 123-202 67-148 (229)
352 3egn_A RNA-binding protein 40; 99.5 3.4E-14 1.2E-18 103.0 9.0 81 122-206 43-132 (143)
353 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5.1E-19 95.7 6.2 73 124-203 5-77 (88)
354 2bz2_A Negative elongation fac 99.5 6.2E-14 2.1E-18 98.3 9.5 77 121-205 36-112 (121)
355 2dha_A FLJ20171 protein; RRM d 99.5 6.9E-15 2.4E-19 103.1 4.4 77 121-202 20-103 (123)
356 1iqt_A AUF1, heterogeneous nuc 99.5 3.6E-14 1.2E-18 90.9 6.6 70 126-200 1-74 (75)
357 3d2w_A TAR DNA-binding protein 99.5 7.9E-14 2.7E-18 92.3 6.9 77 120-203 7-83 (89)
358 2xs2_A Deleted in azoospermia- 99.5 1E-13 3.5E-18 94.4 6.9 74 123-202 8-84 (102)
359 2lcw_A RNA-binding protein FUS 99.2 4.3E-15 1.5E-19 103.8 0.0 81 123-207 6-98 (116)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 1E-13 3.4E-18 91.7 6.6 75 123-204 4-78 (88)
361 2dit_A HIV TAT specific factor 99.4 1.7E-12 5.7E-17 89.8 12.2 78 122-203 13-101 (112)
362 1owx_A Lupus LA protein, SS-B, 99.4 5.7E-13 2E-17 91.8 9.4 75 4-81 16-94 (121)
363 2j8a_A Histone-lysine N-methyl 99.4 4.1E-13 1.4E-17 92.6 8.4 74 125-202 3-94 (136)
364 2voo_A Lupus LA protein; RNA-b 99.4 1.3E-12 4.4E-17 99.2 12.1 74 124-202 109-185 (193)
365 2dnl_A Cytoplasmic polyadenyla 99.4 3.7E-13 1.3E-17 93.5 8.2 64 123-187 7-80 (114)
366 3u1l_A PRE-mRNA-splicing facto 99.4 3.3E-13 1.1E-17 104.9 8.2 82 122-205 132-230 (240)
367 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.6E-17 89.4 9.4 76 123-202 7-92 (105)
368 2dnr_A Synaptojanin-1; RRM dom 99.4 1.3E-12 4.6E-17 84.2 7.8 75 3-83 4-86 (91)
369 3v4m_A Splicing factor U2AF 65 99.3 6E-12 2.1E-16 85.7 7.3 76 123-202 4-95 (105)
370 3s6e_A RNA-binding protein 39; 99.3 1.9E-11 6.4E-16 84.2 8.6 76 123-202 6-91 (114)
371 3ue2_A Poly(U)-binding-splicin 99.3 9.6E-12 3.3E-16 86.3 7.2 76 123-202 19-107 (118)
372 3tht_A Alkylated DNA repair pr 99.3 9.8E-12 3.4E-16 101.7 7.6 66 121-188 15-82 (345)
373 1ufw_A Synaptojanin 2; RNP dom 99.2 1E-11 3.6E-16 80.4 4.9 72 3-80 12-92 (95)
374 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.5E-10 1.5E-14 75.4 12.9 74 125-205 11-91 (100)
375 1jmt_A Splicing factor U2AF 35 99.2 5.7E-12 2E-16 85.7 3.3 69 129-201 20-103 (104)
376 1owx_A Lupus LA protein, SS-B, 99.1 2.9E-10 9.9E-15 78.3 8.1 75 120-200 14-92 (121)
377 3dxb_A Thioredoxin N-terminall 99.1 3.7E-10 1.3E-14 87.8 7.6 76 6-81 124-211 (222)
378 2l9w_A U4/U6 snRNA-associated- 99.0 2.5E-09 8.4E-14 70.6 8.5 73 4-79 19-96 (117)
379 2dnr_A Synaptojanin-1; RRM dom 99.0 1.8E-09 6.2E-14 69.6 6.6 70 124-202 7-84 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.7E-08 5.7E-13 65.5 7.5 70 123-201 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 1.5E-07 5.1E-12 61.7 10.3 73 5-83 7-84 (104)
382 1wey_A Calcipressin 1; structu 98.6 4.8E-07 1.6E-11 59.7 8.7 77 4-83 3-84 (104)
383 3dxb_A Thioredoxin N-terminall 98.5 1.5E-07 5.2E-12 72.9 7.0 63 136-202 141-211 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.4 3.4E-06 1.2E-10 55.8 9.0 71 124-200 21-96 (117)
385 1uw4_A UPF3X; nonsense mediate 98.1 1.2E-05 4.1E-10 52.2 7.0 65 7-71 2-71 (91)
386 1whv_A Poly(A)-specific ribonu 98.0 1.7E-05 5.7E-10 51.4 6.5 54 6-65 16-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.0 5.9E-05 2E-09 51.2 9.3 72 5-81 23-95 (119)
388 3ctr_A Poly(A)-specific ribonu 97.9 1.9E-05 6.5E-10 51.3 5.1 54 7-66 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.8 0.00011 3.7E-09 48.5 7.7 72 125-202 6-82 (104)
390 2dhx_A Poly (ADP-ribose) polym 97.6 0.00043 1.5E-08 45.4 7.7 54 124-181 8-66 (104)
391 1uw4_A UPF3X; nonsense mediate 97.6 0.0005 1.7E-08 44.5 7.9 66 125-190 2-73 (91)
392 2l08_A Regulator of nonsense t 97.5 0.00012 4.1E-09 47.7 4.5 66 6-71 9-79 (97)
393 1whv_A Poly(A)-specific ribonu 97.5 0.00077 2.6E-08 43.7 8.1 54 125-183 17-70 (100)
394 3pq1_A Poly(A) RNA polymerase; 97.3 0.00012 4.2E-09 62.0 3.0 55 6-63 53-107 (464)
395 3p3d_A Nucleoporin 53; structu 97.3 0.00099 3.4E-08 45.8 6.9 76 4-81 5-97 (132)
396 1wwh_A Nucleoporin 35, nucleop 97.2 0.0016 5.4E-08 44.2 7.4 62 123-188 23-84 (119)
397 3ctr_A Poly(A)-specific ribonu 97.2 0.00071 2.4E-08 44.0 5.1 54 125-183 7-60 (101)
398 2l08_A Regulator of nonsense t 96.7 0.002 6.9E-08 41.9 4.3 67 124-190 9-81 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.9 0.0066 2.3E-07 51.6 4.1 56 124-181 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.9 0.039 1.3E-06 38.0 4.7 62 125-188 8-87 (132)
401 3d45_A Poly(A)-specific ribonu 93.9 0.13 4.4E-06 44.5 6.8 54 7-66 441-494 (507)
402 2g0c_A ATP-dependent RNA helic 91.7 0.68 2.3E-05 28.4 6.2 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 89.2 1.7 6E-05 37.5 8.6 56 124-184 440-495 (507)
404 4eyt_A Telomerase associated p 87.5 3.8 0.00013 25.8 8.3 69 4-79 10-78 (129)
405 4e8u_A Putative uncharacterize 78.3 3.4 0.00012 29.8 4.7 59 8-67 14-84 (172)
406 4eyt_A Telomerase associated p 74.0 14 0.00047 23.2 7.9 57 123-183 11-67 (129)
407 3ts2_A Protein LIN-28 homolog 72.3 0.77 2.6E-05 32.5 0.0 28 21-53 2-29 (148)
408 2e5p_A Protein PHF1, PHD finge 57.0 6 0.00021 23.3 1.8 19 31-54 28-46 (68)
409 3j21_T 50S ribosomal protein L 56.2 35 0.0012 21.4 5.6 52 12-63 28-81 (86)
410 2eqj_A Metal-response element- 50.6 9.3 0.00032 22.6 1.9 11 44-54 40-50 (66)
411 2m0o_A PHD finger protein 1; t 49.3 9.2 0.00031 23.2 1.8 20 31-55 45-64 (79)
412 3fry_A Probable copper-exporti 48.9 38 0.0013 19.7 5.6 56 6-65 6-61 (73)
413 1vq8_S 50S ribosomal protein L 48.0 32 0.0011 21.5 4.2 53 11-63 26-80 (85)
414 3lpe_A Putative transcription 46.8 52 0.0018 20.7 6.2 34 32-67 39-72 (92)
415 3uzu_A Ribosomal RNA small sub 42.9 11 0.00039 29.6 2.0 32 7-38 115-146 (279)
416 3swz_A Steroid 17-alpha-hydrox 39.8 47 0.0016 27.9 5.6 59 9-74 17-79 (494)
417 3fut_A Dimethyladenosine trans 39.7 24 0.00082 27.5 3.4 31 7-38 111-141 (271)
418 4bby_A Alkyldihydroxyacetoneph 38.6 30 0.001 30.9 4.3 53 13-65 350-408 (658)
419 4hcz_A PHD finger protein 1; p 37.9 20 0.00068 20.5 1.9 11 45-55 31-41 (58)
420 3h7h_B Transcription elongatio 37.3 40 0.0014 22.1 3.7 36 32-69 40-75 (106)
421 3j21_T 50S ribosomal protein L 36.1 79 0.0027 19.7 7.2 57 126-182 24-83 (86)
422 2zkr_s 60S ribosomal protein L 35.5 71 0.0024 22.5 4.9 51 13-63 99-151 (156)
423 4e8u_A Putative uncharacterize 35.2 99 0.0034 22.2 5.7 48 125-173 13-73 (172)
424 3u5e_X 60S ribosomal protein L 34.5 71 0.0024 22.1 4.6 51 13-63 85-137 (142)
425 1qyr_A KSGA, high level kasuga 34.3 36 0.0012 26.1 3.6 32 7-38 91-122 (252)
426 3tqs_A Ribosomal RNA small sub 33.4 17 0.00058 28.1 1.6 31 8-38 98-128 (255)
427 2od0_A Hypothetical protein VP 33.1 40 0.0014 21.8 3.2 29 17-50 3-31 (105)
428 4a17_R RPL23A, 60S ribosomal p 33.1 83 0.0028 22.0 4.8 51 13-63 93-145 (150)
429 2okq_A Hypothetical protein YB 32.2 1.2E+02 0.0041 20.9 5.4 55 22-76 49-131 (141)
430 3iz5_X 60S ribosomal protein L 31.5 1.3E+02 0.0046 21.0 5.8 56 126-181 90-148 (152)
431 3u5e_X 60S ribosomal protein L 31.1 1.3E+02 0.0045 20.8 6.6 56 126-181 80-138 (142)
432 1x8d_A Hypothetical protein YI 30.8 93 0.0032 20.2 4.6 32 22-54 28-60 (104)
433 3ftd_A Dimethyladenosine trans 30.2 34 0.0012 26.2 2.8 30 7-36 96-125 (249)
434 3iz5_X 60S ribosomal protein L 30.0 61 0.0021 22.7 3.8 51 13-63 95-147 (152)
435 4a17_R RPL23A, 60S ribosomal p 29.7 1.4E+02 0.0049 20.8 6.7 56 126-181 88-146 (150)
436 2kcm_A Cold shock domain famil 29.6 24 0.00081 21.4 1.5 10 45-54 12-21 (74)
437 3tbg_A Cytochrome P450 2D6; mo 29.4 35 0.0012 28.5 3.0 55 10-71 20-77 (479)
438 1wvf_A 4-cresol dehydrogenase 29.1 32 0.0011 29.7 2.8 41 22-62 217-261 (520)
439 3cam_A Cold-shock domain famil 28.2 26 0.00089 20.7 1.5 9 45-53 13-21 (67)
440 1c9o_A CSPB, cold-shock protei 28.0 26 0.0009 20.5 1.5 9 45-53 13-21 (66)
441 2yko_A LINE-1 ORF1P; RNA-bindi 27.9 80 0.0027 23.9 4.3 76 6-81 52-150 (233)
442 2cs4_A Protein C12ORF2; GTP bi 27.7 37 0.0013 21.7 2.1 22 11-32 21-43 (95)
443 1i4w_A Mitochondrial replicati 27.6 46 0.0016 27.1 3.3 22 8-29 144-165 (353)
444 3dxs_X Copper-transporting ATP 27.2 92 0.0032 17.7 6.2 56 7-65 4-63 (74)
445 3a0j_A Cold shock protein; OB- 26.8 28 0.00096 20.9 1.5 9 45-53 13-21 (73)
446 2exu_A Transcription initiatio 26.2 67 0.0023 23.7 3.7 37 33-71 139-175 (200)
447 2g9o_A Copper-transporting ATP 26.0 1.1E+02 0.0039 18.4 5.2 57 6-65 4-64 (90)
448 2k5n_A Putative cold-shock pro 25.8 39 0.0013 20.4 2.0 10 45-54 14-23 (74)
449 1g6p_A Cold shock protein TMCS 25.8 31 0.001 20.2 1.5 9 45-53 12-20 (66)
450 2w7a_A LINE-1 ORF1P; RNA-bindi 25.2 95 0.0033 20.0 3.8 73 7-79 4-99 (100)
451 2nn4_A Hypothetical protein YQ 25.0 19 0.00063 21.7 0.4 18 19-36 4-21 (72)
452 3ced_A Methionine import ATP-b 24.0 1.2E+02 0.0041 19.2 4.2 59 8-66 22-86 (98)
453 2ns6_A Mobilization protein A; 23.8 1.5E+02 0.005 21.5 5.1 44 8-52 73-124 (185)
454 3pm9_A Putative oxidoreductase 23.6 73 0.0025 27.1 4.0 52 14-65 194-251 (476)
455 2uuu_A Alkyldihydroxyacetoneph 23.4 53 0.0018 28.8 3.1 53 14-66 281-339 (584)
456 1h95_A CSD, Y-box binding prot 23.2 36 0.0012 20.8 1.5 10 44-53 19-28 (79)
457 2gu3_A YPMB protein; APC1927, 23.2 1.1E+02 0.0038 20.9 4.1 44 11-54 68-127 (136)
458 1ik9_C DNA ligase IV; DNA END 23.0 56 0.0019 16.7 1.9 15 16-30 20-34 (37)
459 3i2z_B RNA chaperone, negative 22.9 37 0.0013 20.2 1.5 20 30-54 7-26 (71)
460 3aqq_A Calcium-regulated heat 22.8 43 0.0015 23.4 2.0 10 45-54 74-83 (147)
461 1ytr_A Bacteriocin plantaricin 22.7 49 0.0017 14.7 1.4 14 18-31 12-25 (26)
462 2v94_A RPS24, 30S ribosomal pr 22.5 1.4E+02 0.0049 19.4 4.3 45 16-61 37-89 (107)
463 3ulj_A LIN28B, DNA-binding pro 22.2 38 0.0013 21.4 1.5 9 44-52 19-27 (90)
464 1eij_A Hypothetical protein MT 21.4 57 0.002 20.1 2.1 20 12-31 50-69 (80)
465 2xk0_A Polycomb protein PCL; t 20.8 65 0.0022 19.1 2.1 11 45-55 41-51 (69)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.6e-36 Score=232.85 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=144.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35789999999999999999999999999999999965 467889999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 024220 80 AHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
+..... .......+|||+|||..+++++|+++|+.||.|..+.++.+
T Consensus 92 ~~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 92 SQRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CCCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 765411 01112368999999999999999999999999999999887
Q ss_pred CCC--cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 160 SEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 160 ~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+ |||||+|.+.++|++|++.|||..+. ++.|.|.++..
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 543 69999999999999999999999998 99999998863
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.3e-34 Score=223.29 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~-~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+||| ..+|+++|.++|++||.|.+|.++.+ .+|||||+|.++++|+.|++.|||..|.|++|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 578999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc--eEEEE
Q 024220 83 GSGRGPSSSDR-RGGY--GGGGAGGAGGAGAGA-GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEV 156 (270)
Q Consensus 83 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~ 156 (270)
........... .... ...... ....... ..........+..+|||.|||..+++++|+++|+.||.| ..+.+
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSES--RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTC--TTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred CccCCCcccccccCCccccccCCC--ccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 53211000000 0000 000000 0000000 000000112356789999999999999999999999999 88888
Q ss_pred eeCC--CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 157 SRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 157 ~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+.+. ..|+|||+|.+.++|.+|+..|||..+.+......+.|+.
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 8764 2379999999999999999999999999766666676654
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-34 Score=215.31 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+.+++++|.++|+.||+|.+|.+.. ++.++|||||+|.++++|.+|++.|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999954 56688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... .....+|||.|||..+++++|+++|+.||.|..+.++.+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 5421 12347999999999999999999999999999999988763
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 162 ~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
. |+|||+|.+.++|.+|+..|+|..+.+ .+..|.|.++
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 3 699999999999999999999999871 1377877653
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=214.33 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=142.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++|+++|.++|+.||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999643 5678999999999999999998899999999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--
Q 024220 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
. .......+|||+|||..+++++|+++|+.||.|..+.++.+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 11234579999999999999999999999999999999887543
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 --g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|+|||+|.+.++|.+|+..|||..+. ++.|.|.+++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 59999999999999999999999998 9999999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.7e-34 Score=213.29 Aligned_cols=157 Identities=23% Similarity=0.347 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+.+++++|.++|+.||+|.++.+.. ++.++|||||+|.++++|.+|++.|||..|.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999955 46678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... .....+|||+|||..+++++|+++|+.||.|..+.+..+..
T Consensus 81 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSSA-----------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCCG-----------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 5411 12346899999999999999999999999999999988763
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccccCcccccc--eeeec
Q 024220 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKR 200 (270)
Q Consensus 162 ~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~--i~v~~ 200 (270)
+ |+|||+|.+.++|.+|++.|||..+. ++. |.|.+
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~ 166 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKF 166 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEE
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEe
Confidence 3 69999999999999999999999998 543 66654
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=4.9e-33 Score=225.97 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=148.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||..+|+++|+ ++|+.||.|.+|.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCC----C-----------------CCCC--------CCCCCC--------------------CC---
Q 024220 79 LAHGGSGRGPSSSDR----R-----------------GGYG--------GGGAGG--------------------AG--- 106 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~----~-----------------~~~~--------~~~~~~--------------------~~--- 106 (270)
++............. . .... +...+. .+
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 997653210000000 0 0000 000000 00
Q ss_pred --CCCCCCC--C--------------------CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 024220 107 --GAGAGAG--A--------------------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 107 --~~~~~~~--~--------------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
+...+.+ . ........+..+|||+|||..+++++|+++|+.||.|..+.++.+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 0000000 0 0001223356889999999999999999999999999999998766 3
Q ss_pred cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|+|||+|.+.++|.+|++.|||..+.. ++.|.|.+++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 699999999999999999999988862 7889888875
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9.9e-34 Score=217.98 Aligned_cols=166 Identities=13% Similarity=0.248 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|+.||.|.+|.++. ++.++|||||+|.++++|.+|++ +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5678999999999999999999999999999999965 45678999999999999999999 5999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
........ ........+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 76522110 1112244799999999999999999999999999999999876
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+ |||||+|.+.++|.+|+.. +|..+. |+.|.|.++...
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k 183 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSK 183 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC--
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCCh
Confidence 43 6999999999999999986 788888 899999988743
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.2e-33 Score=213.64 Aligned_cols=163 Identities=17% Similarity=0.291 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---C--CCCcEEEEEECCHHHHHHHHHhcCCcccc---CeeEE
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~ 76 (270)
++++|||+|||+.+|+++|.++|++||+|.+|.+..+ + .++|||||+|.++++|.+|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6789999999999999999999999999999999653 2 57899999999999999999999998775 68888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Q 024220 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 156 (270)
+.++..... ......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 82 ~~~~~~~~~----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGCC----------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Ecccccccc----------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 888765411 1224579999999999999999999999999999999
Q ss_pred eeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 157 ~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+.+..+ |+|||+|.+.++|.+|++.|||..+.. ..++.|.|.+++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 887553 599999999999999999999988761 124888888763
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=8.1e-33 Score=217.76 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=147.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||+ .+++++|+++|+.||.|.+|.+..+. +|||||+|.++++|.+|++.|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 160 (270)
.........................................+..+|||+|||..+++++|+++|..|| .|..+.++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 65322211110000000000000000000000111112234568999999999999999999999999 99999986533
Q ss_pred CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|+|||+|.+.++|.+|+..|+|..+. .++.|.|.+++.
T Consensus 189 -~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~~ 227 (229)
T 2adc_A 189 -RKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKS 227 (229)
T ss_dssp -TTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECSS
T ss_pred -CcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEecC
Confidence 469999999999999999999999886 278888888753
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.7e-33 Score=218.01 Aligned_cols=172 Identities=18% Similarity=0.303 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++|+++|+++|+.||.|.+|.+.. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999954 46789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
......+.. ...........+|||.|||..+++++|+++|+.||.|..+.+..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 542110000 00000123457999999999999999999999999999999998854
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 162 ~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+ |+|||+|.+.++|.+|+..|||..+. ++.|.|.++...
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~ 205 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTP 205 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSC
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCC
Confidence 3 69999999999999999999999998 999999998754
No 11
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=5.2e-33 Score=214.31 Aligned_cols=192 Identities=16% Similarity=0.183 Sum_probs=145.7
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 6 SRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 ~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+++|||+|||+ .+++++|.++|+.||.|.+|.+..+. +|||||+|.++++|.+|+..|||..|.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 68999999999 99999999999999999999997654 7999999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCc
Q 024220 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT 163 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g 163 (270)
...+..................................+..+|||+|||..+++++|+++|..|| .|..+.++.+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 22211111000000000000000000011111122234578999999999999999999999999 99999986644 46
Q ss_pred EEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 164 ~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|||+|.+.++|.+|+..|+|..+. .++.|.|.+++.
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~v~~a~~ 196 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKS 196 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCS---SCCSCCEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccC---CCCeEEEEeecc
Confidence 9999999999999999999999886 267888887653
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.5e-32 Score=209.63 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccc-----------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-----------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G-----------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
..+++|||+|||+.+|+++|.++|+.|| .|.++.+. .++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5789999999999999999999999994 56666553 45899999999999999999 699999999
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCce
Q 024220 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 152 (270)
+.|.|.++................ ..............+|||+|||..+++++|+++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVY---------------VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCC---------------CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCC---------------CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 999999987653222111000000 00001122234668999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 153 ~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+.+..+... |||||+|.+.++|.+|++.|+|..+. ++.|.|.++...
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 194 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVG 194 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCC
Confidence 9999987633 69999999999999999999999998 999999998643
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.1e-32 Score=207.82 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=137.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
+++++|||+|||+.+|+++|.++|++| | .|.++.+.. ++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 777777753 4899999999999999999 699999999
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCce
Q 024220 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 152 (270)
++|.|.++..... .....+|||+|||..+++++|+++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998764411 11257999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 153 ~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+.+..+... |+|||+|.+.++|.+|++.|||..+. ++.|.|.++
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 69999999999999999999999998 899998875
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.1e-33 Score=212.32 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=139.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..|.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 367899999999999999999999999997766323 3457789999999999999999996 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..... .......+|||+|||..+++++|+++|+.||.|..+ .....
T Consensus 89 ~~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 89 KGRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp CCSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred CCccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 76521 112345799999999999999999999999999877 33334
Q ss_pred CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..|+|||+|.+.++|.+|+..|+|..+. ++.|.|.++..
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 4579999999999999999999999998 89999998864
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4e-33 Score=209.17 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=139.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|||+|||..+|+++|.++|+.||.|.+|.++. ++.++|||||+|.++++|.+|+.. +..|.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999964 468899999999999999999994 57899999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+.. ......+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234689999999999999999999999999999998775
Q ss_pred C----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
. .|+|||+|.+.++|.+|++ ++|..+. ++.|.|.++..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 3 3699999999999999998 8999998 99999998864
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=8.1e-32 Score=216.10 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=139.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||+.+|+++|.++|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 45689999999999999999999999999999999644 899999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|+++|..||.|..+.++.+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 68999999999999999999999999999999887443
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 --g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|+|||+|.+.++|..|+..|++..+.....++.|.|.++..
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 69999999999999999999665555444578888888764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=2.9e-31 Score=215.72 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=146.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999999854 4678899999999999999999889999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC-CHHHHHHHHHhcCCceEEEEeeC
Q 024220 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
...... .......+|||.|||..+ ++++|+++|+.||.|..+.++.+
T Consensus 173 ~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 765211 112345799999999995 99999999999999999999887
Q ss_pred CCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 160 ~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
..+ |+|||+|.+.++|.+|+..|+|..+. |+.|.|.++...
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~ 264 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPG 264 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCC
Confidence 543 69999999999999999999999998 999999998654
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.1e-30 Score=212.39 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|.++|+.|| |..+.+ +.++|||||+|.++++|.+|+..|||..|.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 3679999999999999999999999999 999988 456899999999999999999999999999999999985422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|..||.|..+.++.+..+
T Consensus 96 -----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 96 -----------------------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp -----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred -----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 69999999999999999999999999999999887643
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|+|||+|.+.++|..|+..|+|..+. ++.|.|.++..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 59999999999999999999999998 89999988864
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.8e-31 Score=214.04 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999553 4679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEeeCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+....... ........+|||.|||.. +++++|+++|+.||.|..+.++.+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65322110 012234589999999999 9999999999999999999998865
Q ss_pred C-----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~-----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
. .|+|||+|.+.++|.+|+ .|||..+. ++.|.|.++...
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 4 479999999999999999 99999998 999999998653
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2e-30 Score=211.63 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||..+|+++|.++|+.||+|..|.|..+ ..++|||||+|.++++|.+|++ |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999664 3458999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCC-
Q 024220 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~- 160 (270)
..+|||+|||..+++++|.++|..|| .|..+.++.+.
T Consensus 117 -----------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 117 -----------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp -----------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred -----------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 25999999999999999999999999 99999998765
Q ss_pred --CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 --~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..|||||+|.+.++|..|+..|+|..+. ++.|.|.++..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 3479999999999999999999999998 89999988764
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=1.3e-25 Score=157.18 Aligned_cols=109 Identities=22% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+++|||+|||+.+|+++|+++|++||.|.+|.|..+ +.++|||||+|.++++|++||+.|||..|+|++|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999999653 456899999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHH
Q 024220 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 140 (270)
....... ........+|||.|||+.+|++.
T Consensus 84 ~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------------------------------
T ss_pred ccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3322111 11122335799999999998864
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=8.6e-23 Score=173.85 Aligned_cols=82 Identities=29% Similarity=0.513 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.||+++|.++|++||.|..|.|+. ++.++|||||+|.++++|.+||..|||..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87643
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=141.63 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+++|+++|.++|++||+|..|.+.. ++.++|||||+|.++++|.+|++.|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999964 46789999999999999999999999999999999999986
Q ss_pred C
Q 024220 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.89 E-value=3.8e-23 Score=144.84 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=95.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++++|||+|||..+|+++|.++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Q 024220 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 150 (270)
+.... .+++...++++|.++|++||-
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54111 356677889999999999984
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=8.3e-23 Score=136.58 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcC-CccccCeeEEEEec
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD-GYNFDGCRLRVELA 80 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~l~v~~~ 80 (270)
|++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.++++|.+|++.|+ +..|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999854 47889999999999999999999774 57799999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.9e-22 Score=137.01 Aligned_cols=81 Identities=59% Similarity=1.034 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||..+|+++|+++|++||.|..|.|..++.+++||||+|.+.++|++|++.||+..|.|++|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 6
No 27
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=2.1e-22 Score=171.49 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+|+++|.++|.+||.|..|.|+.+.. .|||||+|.+.++|++||..|||..|. +..|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 457999999999999999999999999999999987753 369999999999999999999999998 999999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.++.
T Consensus 177 ~~a~ 180 (437)
T 3pgw_S 177 DVER 180 (437)
T ss_pred EEeC
Confidence 8876
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-22 Score=135.36 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--ccccCeeEEEEe
Q 024220 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~ 79 (270)
+..++++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|++.|++ ..|.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3478899999999999999999999999999999999865 89999999999999999998864 789999999999
Q ss_pred cCCCCCC
Q 024220 80 AHGGSGR 86 (270)
Q Consensus 80 ~~~~~~~ 86 (270)
+..+...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9876443
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=133.12 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc--ccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~g~~l~v~~~ 80 (270)
..|+++|||+|||..+|+++|.++|++||.|.++.+.. .+|||||+|.+.++|.+|++.|++.. |.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 36899999999999999999999999999999999974 38999999999999999999999865 78999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 30
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=137.21 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||..+|+++|+++|++||+|..|.+..+ ++|||||+|.++++|.+|++.|||..|.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999766 79999999999999999999999999999999999998764
No 31
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.87 E-value=4.5e-22 Score=128.45 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
-.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|++.||+..|.|++|.|+++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4578999999999999999999999999999999965 59999999999999999999999999999999999884
No 32
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.8e-21 Score=142.78 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=111.2
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhc-CCccccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024220 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (270)
...+|+++|+|.++++|++|++.| ||..|+| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 466899999999999999999999 9999999 9999987643111000000 000011223
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|..|+..|||..+. ++.|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 345689999999999999999999999999999999887 3579999999999999999999999998 99999998
Q ss_pred CCCC
Q 024220 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 33
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2.8e-21 Score=143.13 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=102.3
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024220 42 PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISR 121 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (270)
..++|||||+|.++++|++|+..+++....+..+.+............. .........
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 67 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HHHHHHMDV 67 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CCSSCCCCC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cccccccCC
Confidence 3678999999999999999998887643333333332211110000000 000111223
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+. ++.|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 143 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELR 143 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS----SSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 3468999999999999999999999999999999988753 369999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++....
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99987543
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=135.32 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|..++.++|||+|||..+|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457889999999999999999999999999999999965 56788999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024220 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998663
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=136.84 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||+.+++++|.++|++||.|.+|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 36
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=3.3e-21 Score=132.17 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 577999999999999999999999999999999987 679999999999999999999999999999999999877
Q ss_pred CCCC
Q 024220 84 SGRG 87 (270)
Q Consensus 84 ~~~~ 87 (270)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.8e-21 Score=131.57 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36789999999999999999999999999999999954 467899999999999999999988999999999999999
Q ss_pred cCCCCC
Q 024220 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987743
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.5e-21 Score=130.06 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 367899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98763
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=4e-21 Score=134.51 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5779999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 024220 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 877443
No 40
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=138.26 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4678999999999999999876 799999999999998888899999999999999999999999999999999999
Q ss_pred ecCCC
Q 024220 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99865
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=132.31 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec------CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
+.++++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236789999999999999999999999999999999
Q ss_pred EEecCCCC
Q 024220 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998763
No 42
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=130.01 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|++ ||+..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 024220 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987643
No 43
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=135.13 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--ccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 467899999999999999999999999999999999865 89999999999999999998874 6899999999999
Q ss_pred CCCCCC
Q 024220 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
..+...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876443
No 44
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=132.98 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--ccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~ 79 (270)
.+++++|||+|||+ .+|+++|.++|++||.|.+|.|+.+ ++||||+|.+.++|..|++.||+ ..|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46889999999999 9999999999999999999999754 68999999999999999998886 459999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=130.87 Aligned_cols=82 Identities=33% Similarity=0.490 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||..+++++|+++|++||.|..|.|..+ ..++|||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999764 3468999999999999999999999999999999999998
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 763
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=129.75 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc--CCccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|.++|++||.|.+|.|..+ +|||||+|.+.++|.+|++.| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998764 899999999999999999976 467899999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 87643
No 47
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=131.19 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--ccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|++||.|..|.|... +|||||+|.+.++|.+|++.|++ ..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 367899999999999999999999999999999998754 89999999999999999998865 4589999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87643
No 48
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.4e-21 Score=131.07 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
|+++|||+|||..+++++|.++|++||.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999999999999999654 6779999999999999999999999999999999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=132.58 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++||..|++ .|.|++|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 36789999999999999999999999999999999955 467899999999999999999999998 89999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9765
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.9e-21 Score=132.79 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|.+||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 4567899999999999999999999999999999999998
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76533
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=131.92 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||+.+|+++|.++|++||.|..|.|.. ++.+++||||+|.+.++|.+|+..|||..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999999999999999999999999999965 46678999999999999999999999999999999999998
Q ss_pred CCCC
Q 024220 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
+...
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=132.88 Aligned_cols=82 Identities=33% Similarity=0.507 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999964 4678899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=2.9e-21 Score=127.12 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+++++|.++|++||+|..+.+.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999964 467799999999999999999999999999999999999986
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.4e-21 Score=128.15 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+.+++++|.++|++||.|..+.+.. ++.++|||||+|.++++|.+|++.|||..|+|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46889999999999999999999999999999999843 466799999999999999999999999999999999999
Q ss_pred cC
Q 024220 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-22 Score=133.21 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccc--eEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCc----cccCeeE
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCRL 75 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~~l 75 (270)
.=.||||+|||+.+|+++|.++|++||. |.+|.+.. ++.++|||||+|.++++|.+|++.|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 66888854 4788999999999999999999999996 4899999
Q ss_pred EEEecCC
Q 024220 76 RVELAHG 82 (270)
Q Consensus 76 ~v~~~~~ 82 (270)
.|.|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=132.63 Aligned_cols=82 Identities=30% Similarity=0.481 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+|++.||+..|.|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 67899999999999999999999999999999999553 678999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.4e-21 Score=129.69 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||..+++++|+ ++|++||+|.+|.|..+...++||||+|.+.++|++|++.|||..|+|++|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976654489999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=129.01 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5788999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=130.30 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEE-EEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||..+++++|.++|++||.|..+ .|.. ++.++|||||+|.++++|.+|+..|||..|.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3678999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024220 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998763
No 60
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=1e-21 Score=133.32 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|+..++++|||+|||..+++++|. ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456889999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEecCCC
Q 024220 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999875
No 61
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.6e-21 Score=131.18 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|.++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8763
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=132.56 Aligned_cols=81 Identities=35% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|.++|++||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56799999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=128.96 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||+|..|.+..+ +.++|||||+|.++++|.+|++.||+..|.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56799999999999999999999999999999999654 678999999999999999999999999999999999997
Q ss_pred C
Q 024220 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=130.39 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|++|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5679999999999999999999999999999999965 35678999999999999999999999999999999999998
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=129.23 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||..+++++|+++|++||.|..|.|..+ ..+++||||+|.+.++|.+|+..||+..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 67799999999999999999999999999999999654 35789999999999999999999999999999999999987
Q ss_pred CCC
Q 024220 83 GSG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=4.8e-21 Score=128.60 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||..+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47889999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.1e-21 Score=131.04 Aligned_cols=82 Identities=34% Similarity=0.546 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+.+++++|+++|++||.|..|.|.. ++.++|||||+|.++++|.+|++.||+..|.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 456899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98763
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=4.5e-21 Score=134.21 Aligned_cols=82 Identities=21% Similarity=0.506 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.||+..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87643
No 69
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=126.18 Aligned_cols=77 Identities=34% Similarity=0.623 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+.++|||+|||..+++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CC
Q 024220 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=127.05 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC---C-CCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~---~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+++|||+|||..+|+++|.++|++||.|..+.+..+. . ++|||||+|.++++|.+|+..|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457899999999999999999999999999999995532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.29 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEECCHHHHHHHHHhc-CCccccCeeEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v 77 (270)
..++++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999954 4678999999999999999999999 999999999999
Q ss_pred EecCCCC
Q 024220 78 ELAHGGS 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.++.+..
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998763
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-21 Score=129.45 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.++++|.+|+..|||..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 67799999999999999999999999999999999653 567899999999999999999999999999999999998
Q ss_pred CC
Q 024220 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=129.72 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..+.++|||+|||..+++++|.++|+.|| |..|.|+.+ +.++|||||+|.++++|.+|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred ecCCCC
Q 024220 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998763
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=132.10 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|.++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46789999999999999999999999999999999653 677899999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 75
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=127.95 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc--CeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|++||.|..|.+... ++||||+|.+.++|++|++.||+..|. |++|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57799999999999999999999999999999999754 889999999999999999999999999 9999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1e-20 Score=130.19 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccC---eeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~ 78 (270)
.++++|||+|||..+++++|.++|++||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5689999999999999999999999999999999965 45678999999999999999999999999988 999999
Q ss_pred ecCCCCC
Q 024220 79 LAHGGSG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987744
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=128.64 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC-----eeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~l~v~ 78 (270)
...++|||+|||..+|+++|.++|.+||+|..|.|..+ |||||+|.+.++|++||+.||+..|.| ++|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024220 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998763
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=130.66 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcC------CccccCee
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~------~~~~~g~~ 74 (270)
.++++|||+|||..+++++|.++|..||.|..|.|.. ++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5689999999999999999999999999999999964 36789999999999999999999999 99999999
Q ss_pred EEEEecCCCC
Q 024220 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++.+..
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=125.51 Aligned_cols=77 Identities=34% Similarity=0.593 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||..+++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred CC
Q 024220 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 82 ~~ 83 (92)
T 2dgt_A 82 RL 83 (92)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=128.52 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.++++|.+|++.||+..|.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 367899999999999999999999999999999999654 567899999999999999999999999999999999998
Q ss_pred CC
Q 024220 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 81
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=130.90 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|.++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..|+|++|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36779999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8765
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=7.7e-21 Score=135.31 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999965 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9876
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=129.40 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcccceE-EEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCee---
Q 024220 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 74 (270)
...++++|||+|||..+++++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 999964 4577899999999999999999999999999999
Q ss_pred -EEEEecCCC
Q 024220 75 -LRVELAHGG 83 (270)
Q Consensus 75 -l~v~~~~~~ 83 (270)
|.|.++.+.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998765
No 84
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.6e-20 Score=129.47 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccc---cCeeEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~ 76 (270)
..+.++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999999887 899999
Q ss_pred EEecCCCC
Q 024220 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998763
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.2e-21 Score=129.31 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+.+|+++|.++|++||+|.+|.|..+ +.++|||||+|.++++|.+|+. +++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 56789999999999999999999999999999999654 6789999999999999999999 99999999999999876
Q ss_pred C
Q 024220 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1e-20 Score=131.38 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999964 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 765
No 87
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=124.77 Aligned_cols=76 Identities=32% Similarity=0.549 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||..+|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..|||..|.|++|.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 88
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.7e-21 Score=129.99 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
..++++|||+|||++ +++++|.++|++||.|.+|.|.. ++|||||+|.+.++|.+|++.|+ +..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468899999999998 99999999999999999999974 48999999999999999999885 4669999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 89
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.4e-21 Score=130.55 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+|||+|||..+|+++|.++|++|| .|.++.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999955 56789999999999999999999999999999999999988
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 763
No 90
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.9e-21 Score=132.25 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhcccceEEEEEecCC------CCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+.++|||+|||+.+++++|. ++|++||+|..|.|..+. .++|||||+|.++++|++|++.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 999999999999996542 46699999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 024220 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998763
No 91
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.5e-20 Score=127.76 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|.++|++|| |..|.|+.+ +.++|||||+|.+.++|.+|+ .||+..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 999999653 677899999999999999999 7999999999999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98763
No 92
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.2e-20 Score=132.74 Aligned_cols=79 Identities=24% Similarity=0.567 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999964 467899999999999999999999999999999999998
Q ss_pred cC
Q 024220 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=4.8e-21 Score=130.45 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC-e
Q 024220 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~------~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~ 73 (270)
..+++|||+|||. .+++++|.++|++||.|.+|.|+. ++.++|||||+|.++++|.+|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999954 46789999999999999999999999999999 9
Q ss_pred eEEEEecCCC
Q 024220 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998643
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.4e-20 Score=125.53 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 568999999999999999999999999999999954 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 95
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=128.10 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999865 899999999999999999999999999999999999876
Q ss_pred C
Q 024220 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=130.57 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceE--------EEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~--------~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|||+|||..+|+++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 588854 46789999999999999999999999999999
Q ss_pred eeEEEEecCCCCC
Q 024220 73 CRLRVELAHGGSG 85 (270)
Q Consensus 73 ~~l~v~~~~~~~~ 85 (270)
++|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987643
No 97
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.7e-20 Score=129.50 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999999999999999999999999964 46778999999999999999999999999999999999975
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=123.30 Aligned_cols=76 Identities=28% Similarity=0.471 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc-CCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||..+++++|.++|++||.|..|.+..+ +|||||+|.+.++|.+|+..| ++..|.|++|.|.+++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 357799999999999999999999999999999999864 799999999999999999988 9999999999999974
No 99
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=130.30 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccce----EEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++++|||+|||..+|+++|.++|..||.| ..+.+. ++.++|||||+|.+.++|.+|+..|||..|.|++|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 567999999999999999999999999998 556555 788899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024220 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987643
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=2.7e-20 Score=137.37 Aligned_cols=82 Identities=33% Similarity=0.472 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|++||+|..|.|..+ +.+++||||+|.+.++|.+||+.||+..|.|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024220 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=3.7e-20 Score=125.22 Aligned_cols=76 Identities=25% Similarity=0.544 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||. .+++++|.++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|++|.|+++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 36789999999998 99999999999999999999994 8999999999999999999999999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.3e-20 Score=129.84 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...++|||+|||+.+++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=130.12 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57799999999999999999999999999999999653 45799999999999999999999999999999999999876
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 104
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=126.55 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+++++|+++|++||+|..|.+..+ +|||||+|.+.++|.+|++.|||..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 56789999999999999999999999999999999754 899999999999999999999999999999999999876
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=127.56 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccc-eEEEEEe-c---CCCCCcEEEEEECCHHHHHHHHHhcC--CccccCeeE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l 75 (270)
+.++++|||+|||..+|+++|.++|..||. |..|.+. . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 367899999999999999999999999998 9999986 3 34789999999999999999999996 589999999
Q ss_pred EEEecCCCCC
Q 024220 76 RVELAHGGSG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=3.3e-20 Score=123.15 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||+.+++++|.++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++ +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36789999999999999999999999999999999964 46789999999999999999998 688899999999987
Q ss_pred c
Q 024220 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.7e-20 Score=133.48 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 5678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8663
No 108
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=126.97 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|++||.|. +....++.++|||||+|.++++|++|+..||+..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222345778999999999999999999999999999999999999876
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=128.65 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe-eE
Q 024220 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~------t~~~L~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l 75 (270)
..+++|||+|||..+ |+++|.++|++||.|..|.|. .++.++|||||+|.+.++|.+|+..|||..|+|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999985 3578899999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 024220 76 RVELAHGG 83 (270)
Q Consensus 76 ~v~~~~~~ 83 (270)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998755
No 110
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=127.20 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+.++|||+|||..+++++|+++|++||.|.. +.+.. ++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 56799999999999999999999999999999 88854 46788999999999999999999999999999
Q ss_pred eeEEEEecC
Q 024220 73 CRLRVELAH 81 (270)
Q Consensus 73 ~~l~v~~~~ 81 (270)
+.|.|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=3e-20 Score=128.12 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 899999999999999999999999999999999999876
No 112
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=9.6e-21 Score=132.30 Aligned_cols=74 Identities=62% Similarity=1.012 Sum_probs=65.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccc-----e
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR-----I 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~-----i 196 (270)
...++|||+|||..+++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.|||..+. ++. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEEE
Confidence 45689999999999999999999999999999999887 79999999999999999999999998 655 6
Q ss_pred eeecCC
Q 024220 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666654
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=132.90 Aligned_cols=81 Identities=31% Similarity=0.581 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999964 3567899999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=123.77 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe-eEEE
Q 024220 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 6 ~~~l~v~nl~~~~------t~~~L~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v 77 (270)
+++|||+|||..+ ++++|.++|++||+|..|.|. .++.++|||||+|.++++|.+|+..|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4578899999999999999999999999999999 8876
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=6.6e-20 Score=126.75 Aligned_cols=80 Identities=13% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 6789999999999999999999999999999999965 3678999999999999999999965 59999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8763
No 116
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=127.06 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-ccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcc-ccCeeEEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~l~v~ 78 (270)
..++++|||+|||..+|+++|.++|+. ||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+.. |.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999955 46778999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 024220 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997663
No 117
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=123.58 Aligned_cols=76 Identities=29% Similarity=0.417 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|++| |.|..|.+. ++||||+|.+.++|.+|+..|||..|.|++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 567999999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 118
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=127.44 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc-----cCee
Q 024220 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (270)
Q Consensus 2 ~~~~~~~l~v--~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-----~g~~ 74 (270)
...++++||| +||+..+++++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578899999 77999999999999999999999998864 389999999999999999999999988 6899
Q ss_pred EEEEecCCCC
Q 024220 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++...+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999998653
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=126.60 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+++++|.++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567999999999999999999999999999887 567788999999999999999999999999999999999999866
No 120
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.2e-20 Score=127.57 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||..+++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999997 4589999999999999999999999999999999999875
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=128.26 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.++++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999965 357789999999999999999997 99999999999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98763
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=128.78 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.+++|||+|||..+++++|+++|++||.|..|.|.. +++||||+|.+.++|.+|+..|||..|.|+.|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999999998864 4899999999999999999999999999999999999765
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-21 Score=125.93 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.++++|.+|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46889999999999999999999999999999999964 467899999999999999999999999999999998876
Q ss_pred cC
Q 024220 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.9e-20 Score=125.69 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+++++|.++|++||.|..|.+. +|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 6789999999998 99999999999999999999996 79999999999999999999999999999999999976
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=123.79 Aligned_cols=80 Identities=59% Similarity=0.936 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccC-cccccceeee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~-~~~~~~i~v~ 199 (270)
....++|||+|||..+++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.|||..+.+ ...++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 455789999999999999999999999999999999987 699999999999999999999999981 2222899999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9864
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=124.23 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-ccccCeeEEEEec
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+.++|||+|||..+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666664 389999999999999999999999 9999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8763
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=135.96 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++|||+|||..+|+++|.++|+.|| .|.+|.|+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999954 578899999999999999999999999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=125.61 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|||+|||..+++++|+++|++||.|. +.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999996 5554 3477999999999999999999999999999999999999876
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=128.83 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 130
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=117.90 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=67.9
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcc-cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~-l~v~nl~~~~t~~~----L~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|+.| |||+|||..+++++ |+++|++| |+|.+| + .|+|||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 56777 99999999999988 66899999 499998 3 399999999999999999999999999999999
Q ss_pred EecCCCCC
Q 024220 78 ELAHGGSG 85 (270)
Q Consensus 78 ~~~~~~~~ 85 (270)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99987643
No 131
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.3e-19 Score=128.50 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999955 46789999999999999999999999999999999999998
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 763
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=125.80 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|+.|+.|.-+....++.++|||||+|.++++|.+||..||+..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 67899999999999999999999999875554443456778899999999999999999999999999999999999876
No 133
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-20 Score=126.80 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+++++|+++|.+||.|..+.++ .++.++|||||+|.++++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999766553 35677899999999999999999999999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=126.62 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
...++|||+|||..+++++|.++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8765
No 135
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=1.8e-20 Score=126.58 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|++||.|..+.++. ++.++|||||+|.++++|++|++.||+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999998766643 4677899999999999999999999999999999999987
Q ss_pred C
Q 024220 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=2.7e-20 Score=119.97 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||+.+++++|.++|++||+|..+.+.. ++.++|||||+|.++++|++|++ ||+..|+|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999954 46789999999999999999999 9999999999999875
No 137
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=122.93 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 36789999999999999999999999999999999965 36788999999999999999999 47899999999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98763
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=134.76 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEE--------EEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
..++++|||+|||+.+|+++|.++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 467899999999999999999999999998865 555678889999999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 024220 75 LRVELAHGGSG 85 (270)
Q Consensus 75 l~v~~~~~~~~ 85 (270)
|.|.++.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999986533
No 139
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=121.21 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||..+++++|+++|+.| .|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567999999999999999999999999 999999965 46678999999999999999999 99999999999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 66
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=131.43 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEE--EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCc----cccCe
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGC 73 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~ 73 (270)
..++++|||+|||+.+|+++|.++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88854 568899999999999 999999999999 99999
Q ss_pred eEEEEecCCCC
Q 024220 74 RLRVELAHGGS 84 (270)
Q Consensus 74 ~l~v~~~~~~~ 84 (270)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=8.8e-20 Score=126.53 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++++|||+|||.. +++++|+++|++||.|..|.+ +++||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999754
No 142
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2e-19 Score=133.09 Aligned_cols=81 Identities=33% Similarity=0.501 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8763
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=9.7e-20 Score=129.17 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+|+++|.++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999999954 5788999999999999999999 699999999999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 144
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=4.4e-20 Score=132.53 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 145
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=126.20 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+|+++|+++|..||.|..|.|+.+ +.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999654 67899999999999999999996 9999999999999998
Q ss_pred CCC
Q 024220 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 763
No 146
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=127.36 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 3678999999999999999999 799999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 147
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=130.66 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|++||+|..+.+.. ++.++|||||+|.++++|.+|++.|||..|.|++|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999875
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=122.48 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|.+||.|.. |.|.. ++.++|||||+|.++++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999987 77744 567899999999999999999995 999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 149
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-20 Score=119.89 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++|||+|||..+++++|.++|++||+|..+.+.. ++.++|||||+|.++++|.+|+..++ ..|+|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999888 9999999999986
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=119.83 Aligned_cols=77 Identities=17% Similarity=0.373 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...++|||+|||..+|+++|.++|++||.|.+| +......+ ||||+|.++++|.+|+. |||..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 567899999999999999999999999999998 32222223 99999999999999999 9999999999999988655
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.1e-19 Score=135.34 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred CCCC
Q 024220 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8663
No 152
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=2.5e-20 Score=124.50 Aligned_cols=76 Identities=32% Similarity=0.576 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|||+|||..+++++|.++|++||+|..+.+.. ++.++|||||+|.+.+ |.+|+..|||..|+|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999965 3678999999999999 99999999999999999999999865
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=1.1e-19 Score=120.78 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++.+++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.++++|.+|++.|||..|+|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3678999999999999999999999999 99999885 5689999999999999999999999999999999999865
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-20 Score=126.96 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||..+|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999998877222 2356889999999999999999999 99999999999999998
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=125.46 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccc--------cCe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--------~g~ 73 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5679999999999999999999999999999999965 466789999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 024220 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=118.89 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| .+|+++|+++|++||+|..|.|. .++|||||+|.+.++|.+|+..|||..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 56789999996 89999999999999999999995 55899999999999999999999999999999999999876
Q ss_pred C
Q 024220 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2e-19 Score=131.78 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||+.+|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999998765
No 158
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=2.5e-19 Score=125.07 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee-----EEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-----l~v~ 78 (270)
...++|||+|||..+|+++|.++|++||+|..|.|+.+ |||||+|.+.++|++||+.|||..|+|++ |+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999755 99999999999999999999999999998 7777
Q ss_pred ecCCC
Q 024220 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76654
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=126.35 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccce-EEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567999999999999999999999999999 7788854 567899999999999999999995 999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=7.5e-19 Score=128.00 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEEecCCCC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~~ 84 (270)
.+|||+||++.+|+++|+++|++||+|..|.|.. ..+++||||+|.+.++|++|++.|||..|.| +.|+|+|+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3457899999999999999999999999965 999999998763
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=122.58 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+.+|+++|+++|++||.| .|.|+. ++.++|||||+|.++++|++||+ +|+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999955 888854 56789999999999999999996 89999999999999887
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=5.4e-19 Score=124.09 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEECCHHHHHHHHHhcCCccccC--eeEEEEecCCC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~ 83 (270)
.|||+||++.+|+++|+++|++||+|.+|.+... .+|| |||+|.++++|..|++.|||..|.| +.|+|+|++..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4669999999999999999999999999988642 3688 9999999999999999999999988 99999999876
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=119.84 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEE-EecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||+.+++++|.++|++||.|..|. +..+. ..+.|||+|.+.++|.+|+..|||..|.|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 65442 245599999999999999999999999999999999987
Q ss_pred C
Q 024220 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.4e-19 Score=126.88 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccc---eEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88888854 36788999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024220 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 165
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.8e-20 Score=117.52 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||..+++++|.++|++||+|..+.+.. ++.++|||||+|.++++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 36789999999999999999999 6999999999999875
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=4.2e-19 Score=133.19 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||+.+++++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|+|++|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999965 46789999999999999999999999999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=1.9e-19 Score=128.63 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|++||. |..|.|..+ +.++|||||+|.++++|++||+ ||+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 888888643 6788999999999999999999 99999999999999
Q ss_pred ecCC
Q 024220 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 168
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=126.42 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEE-EE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-EL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|+.||.|..+ .+ ..++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999763 33 3467889999999999999999999 9999999999999998
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.8e-18 Score=120.06 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEECCHHHHHHHHHhcCCccccC--eeEEEEe
Q 024220 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~--l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
++++ |||+||+..+|+++|+++|++||.|.+|.|... .|| |||+|.+.++|..|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999999642 386 9999999999999999999999987 6999999
Q ss_pred cCCCC
Q 024220 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=120.32 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.++|||+|||+.+|+++|+++|+.| .|..|.|.. ++.++|||||+|.++++|++||. ||+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 35789999999999999999999999 899999964 46789999999999999999995 999999999999988754
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=8.4e-19 Score=116.29 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
..++++|||+|||..+++++|+++|++| | .|.++.+..+ +|||||+|.++++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 5788999999999999999999999999 8 8999998754 899999999999999999 89999999
Q ss_pred CeeEEEEe
Q 024220 72 GCRLRVEL 79 (270)
Q Consensus 72 g~~l~v~~ 79 (270)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 172
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.5e-19 Score=139.12 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++|||+|||+.+|+++|+++|++|| .|..|.|+. ++.++|||||+|.+.++|.+||+.||+..|.|++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999964 567899999999999999999999999999999999999
Q ss_pred cCC
Q 024220 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=123.04 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..+.++|||+|||+.+|+++|.++|+.||. |..|.|..+ +.++|||||+|.+.++|.+||. ||+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 367789999999999999999999999998 889988543 6789999999999999999999 9999999999999
Q ss_pred EecCCC
Q 024220 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998643
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9e-19 Score=116.36 Aligned_cols=78 Identities=22% Similarity=0.424 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCC
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||..+++++|.++|++||+|..|.|..+ ++|||||+|.+.++|++|+. ..+.+.|++|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999998754 78999999999999986543 13556899999999887
Q ss_pred CC
Q 024220 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=113.87 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc--ccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.++++|.+ |++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 56799999999999999999999999999999999763 79999999999999984 44544 569999999988
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 176
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-20 Score=129.86 Aligned_cols=81 Identities=27% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
..++++|||+|||..+++++|.++|++||.|.. |.|.. ++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 367899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CeeEEEEecCCC
Q 024220 72 GCRLRVELAHGG 83 (270)
Q Consensus 72 g~~l~v~~~~~~ 83 (270)
|++|.|.++.+.
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999999866
No 177
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.2e-18 Score=124.97 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=74.1
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 024220 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSE 124 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (270)
..++|++|.+...|..|+..++|....|..- +.+. .........
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-----------------------------------~~~~~~~~~ 47 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-----------------------------------RPPPDVEGM 47 (135)
T ss_dssp --------------------------------CCSC-----------------------------------CSCSSGGGC
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCcC-----------------------------------CCCCCCCCC
Confidence 3467889999999999999888766544321 1110 112233456
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|.+
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~ 123 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQM 123 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEE
Confidence 7999999999999999999999999999999987653 369999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024220 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
++...
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=123.54 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcccce----EEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v----~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
..+.++|||+|||+++|+++|+++|++||.| ..|.|.. ++.++|||||+|.++++|++||. +|+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 3567899999999999999999999999975 5777753 57789999999999999999999 599999999999
Q ss_pred EEecCC
Q 024220 77 VELAHG 82 (270)
Q Consensus 77 v~~~~~ 82 (270)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=4.3e-19 Score=127.18 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.++++|++|| .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 66888854 3678999999999999999999 599999999999999887
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=2.9e-18 Score=120.45 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| .+|+++|.++|++||.|..|.+. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 56799999996 69999999999999999999996 56899999999999999999999999999999999999866
No 181
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.4e-18 Score=122.13 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceE--EEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||+.+|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++||+ +++..|+|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 566 888854 36789999999999999999999 688999999999988
Q ss_pred cCC
Q 024220 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=7.4e-19 Score=120.16 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999965 46678999999999999999999 9999999999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=9.5e-18 Score=114.51 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEECCHHHHHHHHHhcCCccccCe
Q 024220 3 GRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~~~~l~v~nl~~-----~~t~~~L~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
..++++|+|.||.. +-++++|+++|++||.|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 47899999999963 2478999999999999999999653 46799999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024220 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=116.74 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++++|||+|||+.+|+++|+++|++||+|. +.++.+ +.++|||||+|.++++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 666432 5789999999999999999999883 245555555
Q ss_pred Eec
Q 024220 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 185
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=5.6e-18 Score=116.61 Aligned_cols=81 Identities=33% Similarity=0.615 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...++|||+|||..+++++|+++|+.|| .|..+.+......|||||+|.+.++|++|++.|||..+. ++.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3468999999999999999999999999 899999876556689999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024220 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 875543
No 186
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-17 Score=113.38 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3457999999999999999999999999999999998762 269999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024220 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
.++....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9997543
No 187
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-17 Score=111.18 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=74.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|++..+. ++.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 3445678999999999999999999999999999999977654 479999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.+++...
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987543
No 188
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-17 Score=124.39 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4678899999999999999999999999999999999998
Q ss_pred C
Q 024220 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7.6e-18 Score=130.70 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..++|||+|||+.+|+++|.++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|+|++|.|.++.++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4578999999999999999999999999999999653 457899999999999999999999999999999999999764
No 190
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=112.38 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+.+|||+|||..+|+++|+++|++||.|..+.++.++.+ |||||+|.+.++|++|++.|||..+. ++.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3578999999999999999999999999999999987654 59999999999999999999999998 999999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.+++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 9885
No 191
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.3e-16 Score=111.41 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|++..+. ++
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 95 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MK 95 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 33445689999999999999999999999999999999988644 59999999999999999999999998 99
Q ss_pred ceeeecCCCCC
Q 024220 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|.++....
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999987543
No 192
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.7e-17 Score=123.42 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=73.2
Q ss_pred EEECCHHHHHHHHHhcCCcccc--CeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceE
Q 024220 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (270)
.+|.+.++|..|+..|++.... |+.+.+.++.... ...+.... ...............+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~---------~~~~~~~~------~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA---------IHSYERVR------NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc---------ccCccccc------cCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999989886554 5555544322110 00000000 00000011112234457899
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 128 ~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
||+|||..+++++|.++|..||.|..|.++.+..+ |||||+|.+.++|+.|+..|||..+. ++.|.|.++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999987643 69999999999999999999999998 99999999864
Q ss_pred C
Q 024220 204 S 204 (270)
Q Consensus 204 ~ 204 (270)
.
T Consensus 152 ~ 152 (165)
T 1rk8_A 152 K 152 (165)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2e-17 Score=128.54 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 4577899999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=2e-17 Score=117.46 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=73.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..||.|..|.++.+.. .|||||+|.+.++|++|++.|+|..+. +..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 334568999999999999999999999999999999987753 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024220 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|.++....
T Consensus 94 l~v~~a~~~~ 103 (126)
T 3ex7_B 94 ISVDWCFVRG 103 (126)
T ss_dssp CEEEESEESS
T ss_pred EEEEEecCCC
Confidence 9999987433
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=1e-17 Score=130.15 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc----
Q 024220 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~---------t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---- 70 (270)
.++++|||+||+..+ ++++|.++|++||+|.+|.|+.. +|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 79999999999999999999753 89999999999999999999999999
Q ss_pred --------cCeeEEEEecCCC
Q 024220 71 --------DGCRLRVELAHGG 83 (270)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (270)
.|+.|.|.|+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.4e-17 Score=125.17 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|.++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 456899999999999999999999999999888 667889999999999999999999999999999999999999765
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=8.4e-18 Score=115.80 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=68.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECC----HHH----HHHHHH--hcCCcc
Q 024220 7 RTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGYN 69 (270)
Q Consensus 7 ~~l~v~nl----~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~----~~~----a~~A~~--~l~~~~ 69 (270)
+.|||+|| |+.+++++|.++|+.||+|.++.++. |+.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999965 56789999999996 434 888988 789999
Q ss_pred ccCeeEEEEecCCC
Q 024220 70 FDGCRLRVELAHGG 83 (270)
Q Consensus 70 ~~g~~l~v~~~~~~ 83 (270)
|+|++|.|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987754
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=113.21 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCC-----------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC
Q 024220 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~-----------t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|+|.||.... ++++|.++|++||+|..|.| .+..++|||||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999994443 26899999999999999966 455689999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 024220 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998765
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=2.7e-17 Score=126.14 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|.++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999954 4667899999999999999999999999999999999999
Q ss_pred CCC
Q 024220 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 200
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-16 Score=107.29 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|++..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEE
Confidence 3455689999999999999999999999999999999987543 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999876443
No 201
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.7e-17 Score=123.67 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..|+|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999964 46789999999999999999999 99999999999999997
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=2e-17 Score=123.92 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEec
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++|||+|||..+|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4567899999999999999999999999999999999987
No 203
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=5.8e-16 Score=108.06 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+... |||||+|.+.++|++|++.|+|..+. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456789999999999999999999999999999999987543 59999999999999999999999998 99
Q ss_pred ceeeecCCCCCCC
Q 024220 195 RITVKRYDRSPSR 207 (270)
Q Consensus 195 ~i~v~~~~~~~~r 207 (270)
.|.|.++......
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999765443
No 204
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-16 Score=107.18 Aligned_cols=83 Identities=20% Similarity=0.347 Sum_probs=74.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 33455689999999999999999999999999999999987632 69999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024220 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|.++...+
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999987543
No 205
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=108.66 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC--CCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+ ...+||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 3446789999999999999999999999999999999987 22369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999875433
No 206
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=106.55 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
......+|||+|||..+++++|+++|..||.|. +.++.+...|||||+|.+.++|++|++.|||..+. ++.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 344568999999999999999999999999997 67777777789999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024220 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98653
No 207
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-16 Score=108.46 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|++|++.|++..+. ++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEE
Confidence 345689999999999999999999999999999999987653 59999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987543
No 208
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=5e-17 Score=124.37 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH-hCCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999965 46789999999999999999999 48999999999999998
Q ss_pred CCCC
Q 024220 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7744
No 209
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-16 Score=106.75 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|++|+..|+|..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3345568999999999999999999999999999999988754 479999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024220 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|.++....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999987543
No 210
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=107.55 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccccCcccccceeee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|+.|++.|++ ..+. |+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 34589999999999999999999999999999999986 47999999999999999998864 6677 8999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++..
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 9864
No 211
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=8e-17 Score=122.51 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecCCC
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||..+|+++|.++|++||+|..|.|.. ++.++|||||+|.++++|.+|+..+ +..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999965 4667899999999999999999954 56999999999998765
No 212
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-16 Score=106.66 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=73.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|++..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 3456689999999999999999999999999999999887633 69999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024220 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998754
No 213
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.6e-16 Score=102.50 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=67.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..-|||+||++.+|+++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+. ++.|.|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 36899999999999999999999999999999877 3589999999999999999999999999 9999998873
No 214
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=8.7e-17 Score=119.93 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccC--eeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~ 78 (270)
.+.++|||+|||..+++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45678999999999999999999999999987 999999
Q ss_pred ec
Q 024220 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 215
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=107.54 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3445789999999999999999999999999999999987643 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024220 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.++.....
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999875443
No 216
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=5.3e-16 Score=106.43 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccc---cc
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---GR 195 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~---~~ 195 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. + +.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCcc
Confidence 45689999999999999999999999999999999987643 69999999999999999999999987 5 89
Q ss_pred eeeecCCCCCCC
Q 024220 196 ITVKRYDRSPSR 207 (270)
Q Consensus 196 i~v~~~~~~~~r 207 (270)
|.|.++.....+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999765443
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=1.2e-16 Score=111.44 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=70.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 358999999999999999999999999999999887653 69999999999999999999999998 999999988
Q ss_pred CC
Q 024220 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 218
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=107.08 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+. ++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 344568999999999999999999999999999999988754 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024220 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|.++....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999987543
No 219
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=8.7e-17 Score=120.72 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccc---CeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 79 (270)
+.++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999965 3567899999999999999999999998775 49999998
Q ss_pred cC
Q 024220 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 220
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=105.77 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 344568999999999999999999999999999999988754 369999999999999999999999998 999
Q ss_pred eeeecCC
Q 024220 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|.+++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998763
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-16 Score=105.10 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 458999999999999999999999999999999988763 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024220 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99976544
No 222
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=108.93 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|++|++.|||..+. ++.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 3579999999999999999999999999999999988764 69999999999999999999999998 999999
Q ss_pred ecCCC
Q 024220 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..+..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 98864
No 223
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-16 Score=105.89 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=74.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-----CCcEEEEEeCChhhHHHHHHhc-CCccccCccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~ 192 (270)
.......+|||+|||..+++++|+++|..||.|..|.++.+. ..|||||+|.+.++|++|+..| ++..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---- 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---- 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----
Confidence 344567899999999999999999999999999999998772 2369999999999999999999 999998
Q ss_pred ccceeeecCCCCCC
Q 024220 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|.++.....
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999975443
No 224
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-16 Score=105.53 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.||+..+. ++.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 3568999999999999999999999999999999988754 369999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99987543
No 225
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=105.72 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=71.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCE
Confidence 33456689999999999999999999999999999999987653 59999999999999999999999998 899
Q ss_pred eeeecCC
Q 024220 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|.+++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998874
No 226
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.6e-16 Score=102.28 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=70.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.+++ +||||+|.+.++|++|++.|++..+. ++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET----TEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 3458999999999999999999999999999999883 59999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024220 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75443
No 227
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-16 Score=103.63 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=72.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 457999999999999999999999999999999998754 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024220 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
.++.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99975443
No 228
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-16 Score=105.00 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 123 SEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+|||+|||..+++++|+ ++|++||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+. ++.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45799999999999999999 9999999999999987654 379999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997543
No 229
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=107.37 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=68.8
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--ccCcccccceee
Q 024220 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v 198 (270)
.+..+|||+|||. .+++++|+++|++||.|..+.++.++ +||||+|++.++|+.|++.|++.. +. ++.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 3568999999999 99999999999999999999998765 699999999999999999998754 66 999999
Q ss_pred ecCCC
Q 024220 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 230
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=1.7e-16 Score=118.22 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccccCee--EEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--l~v~~ 79 (270)
+.++|||+|||..+++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999954 4567899999999999999999999999999965 88887
Q ss_pred c
Q 024220 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 231
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.2e-16 Score=127.76 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc-CeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 467899999999999999999999999999999997442 589999999999999999999999999 9999999986
No 232
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=105.90 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
++|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++|++.|+|..+. ++.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 37999999999999999999999999999999988 5579999999999999999999999998 999999998754
Q ss_pred C
Q 024220 205 P 205 (270)
Q Consensus 205 ~ 205 (270)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 233
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-16 Score=106.23 Aligned_cols=83 Identities=16% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-----CcEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.+..+..+|||+|||..+++++|+++|..|| |..+.++.+.. .|||||+|.+.++|++|+ .|++..+. +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----T
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----C
Confidence 3445668999999999999999999999999 99999988754 369999999999999999 99999998 9
Q ss_pred cceeeecCCCCCCC
Q 024220 194 GRITVKRYDRSPSR 207 (270)
Q Consensus 194 ~~i~v~~~~~~~~r 207 (270)
+.|.|.++.....+
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999998764443
No 234
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.7e-16 Score=103.93 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++ |++..+. ++.|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEEE
Confidence 4568999999999999999999999999999999988753 3699999999999999999 9999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999875433
No 235
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-16 Score=104.02 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 33456789999999999999999999999999999999987653 59999999999999999999999998 99
Q ss_pred ceeeecCC
Q 024220 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|.+++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998875
No 236
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=2e-16 Score=108.03 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCC
Q 024220 3 GRFSRTIYVGNL--PSDIR--------EYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~~~~l~v~nl--~~~~t--------~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+.|+++|.|.|+ |..+. +++|+++|++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 578999999998 33333 4789999999999999999654 25789999999999999999999999
Q ss_pred ccccCeeEEEEecCC
Q 024220 68 YNFDGCRLRVELAHG 82 (270)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (270)
..|+|+.|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 237
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.1e-15 Score=104.97 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccc---cCccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF---RNPWA 192 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~---~~~~~ 192 (270)
......+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|++|++.|++..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---- 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM---- 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----
Confidence 344568999999999999999999999999999999988754 36999999999999999999999887 5
Q ss_pred ccceeeecCCCCC
Q 024220 193 RGRITVKRYDRSP 205 (270)
Q Consensus 193 ~~~i~v~~~~~~~ 205 (270)
++.|.|.++....
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 8999999987543
No 238
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=104.73 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--ccCcccccceeee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|.++|++||.|..+.++..+ |+|||+|++.++|..|++.|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 456899999999999999999999999999999988643 699999999999999999999876 55 8999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8864
No 239
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=103.82 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=71.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-----CCcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+. ..|+|||+|.+.++|++|++.|||..+. ++.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4799999999999999999999999999999998776 4479999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024220 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+..+.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9886543
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-15 Score=102.83 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|++||.|..+.+..+ .+||||+|.+.++|++|++.|||..+.+ .++.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 35589999999999999999999999999999998876 4699999999999999999999988762 1688999988
Q ss_pred CCCCC
Q 024220 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
...+.
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75433
No 241
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=102.25 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|++|+..|||..+. ++.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 345689999999999999999999999999999999865 9999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024220 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97543
No 242
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-15 Score=105.00 Aligned_cols=82 Identities=11% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcC------CccccC
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFRN 189 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~------g~~~~~ 189 (270)
...+..+|||+|||..+++++|+++|..||.|..|.++.+.. .|||||+|.+.++|++|++.|+ +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 344568999999999999999999999999999999997754 3699999999999999999999 99988
Q ss_pred cccccceeeecCCCCC
Q 024220 190 PWARGRITVKRYDRSP 205 (270)
Q Consensus 190 ~~~~~~i~v~~~~~~~ 205 (270)
++.|.|.++....
T Consensus 90 ---g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRD 102 (111)
T ss_dssp ---SCEEEEECCCCCC
T ss_pred ---CEEEEEEECCCCc
Confidence 9999999987543
No 243
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=107.22 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccccCcccccce
Q 024220 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i 196 (270)
...+..+|||+|||.. +++++|+++|.+||.|..+.++.. .|||||+|++.++|+.|++.|++ ..+. ++.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQ----GRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSS----SSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEE
Confidence 3556789999999998 999999999999999999999865 37999999999999999998865 4466 9999
Q ss_pred eeecCCC
Q 024220 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|.++..
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999864
No 244
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8e-16 Score=102.43 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|++|++.|+|..+. ++.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 35689999999999999999999999999999999864 9999999999999999999999998 999999999
Q ss_pred CCCC
Q 024220 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 245
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=102.86 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=69.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|+|..+. ++.|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEE
Confidence 4589999999999999999999999999999999987543 59999999999999999999999998 999999
Q ss_pred ecCCC
Q 024220 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 98864
No 246
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=5.4e-16 Score=110.18 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344568999999999999999999999999999999987743 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024220 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|.++...+
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987543
No 247
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=1.7e-15 Score=103.43 Aligned_cols=76 Identities=12% Similarity=0.223 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+..+|||+|||..+++++|+++|..||.|..+.++++ ||||+|.+.++|++|++.|++..+. ++.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 4579999999999999999999999999999998853 9999999999999999999999998 9999999987
Q ss_pred CCCC
Q 024220 203 RSPS 206 (270)
Q Consensus 203 ~~~~ 206 (270)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5433
No 248
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.9e-16 Score=105.60 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 3568999999999999999999999999999999987743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875443
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.4e-16 Score=104.22 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
+.++|||+|||..+++++|+++|+.||.|..+ .++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 45799999999999999999999999999998 8888743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999875443
No 250
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.5e-15 Score=103.87 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||.. +++++|+++|.+||.|..+.+. .+||||+|.+.++|++|++.|+|..+. ++.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH----KGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE----TTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34579999999999 9999999999999999999983 369999999999999999999999998 99999999
Q ss_pred CCCC
Q 024220 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 251
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-15 Score=103.12 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHh-cCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCcc-ccCcccccce
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~-~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+++|.. ||.|..+.++.+..+ |||||+|.+.++|++|++.|+|.. +. ++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEeE
Confidence 45689999999999999999999999 999999999987632 599999999999999999999999 88 8999
Q ss_pred eeecCCCCC
Q 024220 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (104)
T 2dhg_A 83 RLSVAIPKA 91 (104)
T ss_dssp CCCBCCCCC
T ss_pred EEEEccCCC
Confidence 999986543
No 252
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.2e-16 Score=106.88 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=70.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccccCccccccee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|++||.|..+.++.++ |||||+|++.++|.+|++.|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k--G~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG--TEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 34456899999999999999999999999999999999863 7999999999999999999875 4676 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.++...
T Consensus 101 V~~a~~k 107 (119)
T 2ad9_A 101 IQFSNHK 107 (119)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 9998643
No 253
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-15 Score=103.53 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.+..+..+|||+|||..+++++|+++|..|| |..+.++.+..+ |||||+|.+.++|++|+ .|+|..+. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 3445578999999999999999999999997 999999988653 59999999999999999 89999998 99
Q ss_pred ceeeecCCCCC
Q 024220 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999987543
No 254
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=121.43 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc-CeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|.++|+.|| .|..+.+..+ .+|||||+|.+.++|.+|+..|||..|+ |++|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 9999999653 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 255
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=4.5e-16 Score=122.05 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc-CeeEEEEecC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|.++|+.|| .|..|.+... .+|||||+|.+.++|.+|+..|||..|. |++|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999543 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 024220 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 256
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=105.47 Aligned_cols=76 Identities=14% Similarity=0.296 Sum_probs=67.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcC-CccccCcccccceee
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD-DTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~-g~~~~~~~~~~~i~v 198 (270)
++|||+|||..+|+++|+++|+.|| .|..|.++.++.+ |||||+|.+.++|++|++.++ +..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 6899999999999999999999999 8999999877543 699999999999999999875 55677 999999
Q ss_pred ecCCCC
Q 024220 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
.++...
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 998643
No 257
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=103.35 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=68.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--ccCcccccceeee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|.+|++.|++.. +. ++.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 45689999999999999999999999999999998875 4799999999999999999987654 66 9999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9864
No 258
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=103.10 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEE-EEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.....+|||+|||..+++++|+++|..||.|..+ .++.+..++.|||+|.+.++|+.|+..|+|..+. ++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3456899999999999999999999999999999 5888887778999999999999999999999998 9999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++..
T Consensus 88 ~a~~ 91 (96)
T 2e44_A 88 YIPD 91 (96)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 8864
No 259
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-15 Score=102.57 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+ .|||||+|.+.++|++|++.|+|..+. ++.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEEc
Confidence 45689999999999999999999999999999999876 469999999999999999999999998 899999998
Q ss_pred CCCC
Q 024220 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
....
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7543
No 260
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=104.91 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
...++|||+|||..+++++|+++|..||.|..+.++.+ .|||||+|.+.++|+.|+..|+|..+. ++.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45689999999999999999999999999999999887 469999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024220 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 261
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-16 Score=103.85 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=71.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 457999999999999999999999999999999987654 269999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024220 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 999998754
No 262
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=6.9e-16 Score=101.60 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |+|||+|.+.++|+.|++.|+|..+. ++.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35689999999999999999999999999999999876433 69999999999999999999999998 89999
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 88763
No 263
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=105.07 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCC--ceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.-.+|||+|||+.+|+++|+++|++||. +..|.++.++.+ |||||+|.+.++|++|++.|||......+.|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 667888887643 6999999999999999999999863222339999
Q ss_pred eeecCCC
Q 024220 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|++++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998863
No 264
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=1.7e-15 Score=101.27 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3568999999999999999999999999999999987532 269999999999999999999999998 8999999
Q ss_pred cCCCC
Q 024220 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
+++..
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 88653
No 265
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-15 Score=101.85 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC--CccccCcccccceee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~v 198 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|+ +..+. ++.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEEE
Confidence 345689999999999999999999999999999988876 4799999999999999999874 56677 999999
Q ss_pred ecCCC
Q 024220 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99874
No 266
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=8e-16 Score=105.86 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.+. .|||||+|.+.++|++|++.|+|..+. ++.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999999999988 469999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024220 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 876543
No 267
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-15 Score=103.41 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=72.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCc----eEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|.++|..||.| ..+.+......|||||+|.+.++|+.|++.|+|..+. ++.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 456899999999999999999999999998 6677776666689999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024220 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999975443
No 268
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=102.19 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=72.1
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCc
Q 024220 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
..+.....+|||+|||..+++++|+++|+.||.|.. +.++.++.+ |||||+|.+.++|++|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344456789999999999999999999999999999 999887653 69999999999999999999999
Q ss_pred cccCcccccceeeecCC
Q 024220 186 EFRNPWARGRITVKRYD 202 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~ 202 (270)
.+. ++.|.|..++
T Consensus 87 ~~~----g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFS----GNPIKVSFAT 99 (99)
T ss_dssp BSS----SSBCEEEECC
T ss_pred EeC----CcEEEEEecC
Confidence 998 8999988763
No 269
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-15 Score=100.91 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|..| |.|..+.+.+ +||||+|.+.++|++|+..|+|..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 33456899999999999999999999999 8999888764 49999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.+++..
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998653
No 270
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=104.87 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=73.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCce--------EEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
.....++|||+|||..+++++|+++|..||.|. .+.++.+.. .|||||+|.+.++|++|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 334568999999999999999999999999998 688888744 36999999999999999999999999
Q ss_pred cCcccccceeeecCCCCCC
Q 024220 188 RNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 188 ~~~~~~~~i~v~~~~~~~~ 206 (270)
. ++.|.|..+.....
T Consensus 91 ~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKPP 105 (113)
T ss_dssp T----TEECEEECSSCCCC
T ss_pred C----CCEEEEEECCCCCC
Confidence 8 99999999876443
No 271
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.5e-15 Score=100.42 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEE
Q 024220 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 4 ~~~~~l~v~nl~-------~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
.....|.|.-.. ..+++++|+++|++||+|.+|.|. +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345677777655 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEecCCCCC
Q 024220 77 VELAHGGSG 85 (270)
Q Consensus 77 v~~~~~~~~ 85 (270)
|.|+.....
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 272
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=1e-15 Score=103.16 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=70.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 47999999999999999999999999999999988754 369999999999999999999999998 8999999
Q ss_pred cCCCC
Q 024220 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
++...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 98653
No 273
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=100.06 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhc-CCccccCcccccceeee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~g~~~~~~~~~~~i~v~ 199 (270)
.....+|||+|||..+++++|+++|++||.|..+.++.++ |||||+|.+.++|++|+..| +|..+. ++.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET----TEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEEE
Confidence 3456899999999999999999999999999999998753 69999999999999999999 998888 8889888
Q ss_pred cCC
Q 024220 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 274
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.5e-15 Score=110.53 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.....|||+||++.+++++|+++|++||.|..|.+......+||||+|.+.++|+.|++.|+|..+.+ .++.|+|.++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEe
Confidence 34568999999999999999999999999999999876666799999999999999999999999961 1489999998
Q ss_pred CC
Q 024220 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
+.
T Consensus 122 k~ 123 (164)
T 1sjr_A 122 KL 123 (164)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 275
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-15 Score=102.69 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|+.. ++..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEE
Confidence 3456689999999999999999999999999999999988654 5999999999999999998 999998 999
Q ss_pred eeeecCCCC
Q 024220 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 999988643
No 276
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=103.96 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|+..|+|..+. ++.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 345689999999999999999999999999999999987653 69999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024220 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|.++..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9988764
No 277
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.4e-15 Score=105.38 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=71.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......++|||+|||..+++++|+++|.+||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+. ++
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3445678999999999999999999999999999999987754 369999999999999999999999998 89
Q ss_pred ceeeecC
Q 024220 195 RITVKRY 201 (270)
Q Consensus 195 ~i~v~~~ 201 (270)
.|.|.++
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9988876
No 278
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=105.92 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHH---HHHHhcCCceEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccccCcc
Q 024220 122 HSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~-------g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
...++|||+|||..+++++|. ++|.+||.|..+.++.+... |||||+|.+.++|++|++.|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---
Confidence 446799999999999999999 99999999999999877542 69999999999999999999999998
Q ss_pred cccceeeecCCCCC
Q 024220 192 ARGRITVKRYDRSP 205 (270)
Q Consensus 192 ~~~~i~v~~~~~~~ 205 (270)
++.|.|.++...+
T Consensus 90 -gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 -GRTLKASLGTTKY 102 (111)
T ss_dssp -TEEEEEESCCCCS
T ss_pred -CEEEEEEeccccc
Confidence 9999999987543
No 279
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=1.6e-15 Score=99.32 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|+..|+|..+. ++.|.|.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 68999999999999999999999999999999887543 69999999999999999999999998 99999998
Q ss_pred CCCC
Q 024220 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8643
No 280
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=2.7e-16 Score=120.84 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccce--EEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCccccCe----eEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~----~l~ 76 (270)
.++++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467899999999999999999999999999 88988654 35569999999999999999999999999876 677
Q ss_pred EEec
Q 024220 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7764
No 281
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-15 Score=106.42 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=74.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..|.++.+..+ |||||+|.+.++|.+|++.|+|..+. ++.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 3455689999999999999999999999999999999987653 59999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024220 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999987543
No 282
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-15 Score=102.18 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|+|..+. ++
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----GR 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----SS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 33455689999999999999999999999999999999887553 69999999999999999999999998 99
Q ss_pred ceeeecCCCC
Q 024220 195 RITVKRYDRS 204 (270)
Q Consensus 195 ~i~v~~~~~~ 204 (270)
.|.|..+...
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999988643
No 283
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=103.88 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 45689999999999999999999999999987666655433 69999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998654
No 284
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=101.62 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCce-EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc-
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~- 195 (270)
.+..+|||+|||..+++++|+++|..||.|. .+.++.++.+ |||||+|.+.++|++|++.|||..+. ++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 3468999999999999999999999999999 9999988644 69999999999999999999999998 666
Q ss_pred ---eeeecCCCC
Q 024220 196 ---ITVKRYDRS 204 (270)
Q Consensus 196 ---i~v~~~~~~ 204 (270)
|+|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 889888643
No 285
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=1.7e-15 Score=104.27 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3456789999999999999999999999999999999987633 59999999999999999999999998 8999
Q ss_pred eeecCC
Q 024220 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988763
No 286
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-15 Score=103.27 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.++. .|||||+|.+.++|++|++.+++ .+. ++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GR 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CE
Confidence 3345668999999999999999999999999999999988754 36999999999999999999998 777 89
Q ss_pred ceeeecCCC
Q 024220 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|.++..
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 999999864
No 287
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=104.87 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 344568999999999999999999999999999999987643 379999999999999999999999998 99999
Q ss_pred eecCCC
Q 024220 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998764
No 288
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=103.49 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=67.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|.+||.|..+........|||||+|.+.++|++|++.|++..+. ++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEEEEE
Confidence 34568999999999999999999999999883222212233479999999999999999999999998 99999999
Q ss_pred CCCC
Q 024220 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8754
No 289
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=9.3e-16 Score=109.45 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcc
Q 024220 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.++.....+|||+|||+.+|+++|+++|+.||. |..|.++.+..+ |||||+|.+.++|++|++ +++..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 344456789999999999999999999999999 788999887653 699999999999999999 9999998
Q ss_pred cccceeeecCC
Q 024220 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 114 -gr~i~V~~a~ 123 (136)
T 2hgl_A 114 -HRYIEVFKSH 123 (136)
T ss_dssp -SSEEEEEECC
T ss_pred -CEEEEEEECC
Confidence 9999998764
No 290
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.9e-15 Score=104.60 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|+..|+|..+. ++.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 445689999999999999999999999999999999877543 69999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024220 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 99988643
No 291
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=8e-16 Score=102.40 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=66.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|++|++.|||..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 4799999999999999999999999 9999999988644 59999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024220 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+...+
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9887543
No 292
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-15 Score=101.82 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=68.0
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 121 RHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+..+|||+|||. .+++++|+++|+.||.|..+.+.+ |||||+|.+.++|+.|++.|+|..+. ++.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIECESQEMNF----GKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET----TEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEE
Confidence 34568999999998 999999999999999999999863 69999999999999999999999998 8999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++..
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 8864
No 293
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-15 Score=101.70 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcc----cc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----AR 193 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~----~~ 193 (270)
.....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|||..+.+.. .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999988632 59999999999999999999999996333 47
Q ss_pred cceeeecCC
Q 024220 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|.+++
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778888876
No 294
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=1e-15 Score=103.89 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=69.3
Q ss_pred cceEEEeCCCC------CCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 124 EYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 124 ~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.++|||+|||. .+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|++|++.|||..+. +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD----L 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----S
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----C
Confidence 57999999999 9999999999999999999999988753 69999999999999999999999998 7
Q ss_pred -cceeeecCC
Q 024220 194 -GRITVKRYD 202 (270)
Q Consensus 194 -~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 899988764
No 295
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=104.71 Aligned_cols=79 Identities=9% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEeeC-CCCcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 346799999999999999876 69999999999888653 34479999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024220 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998743
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=3.8e-15 Score=100.44 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCCCCcceEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 119 ISRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|.+|+..|+|..+. ++.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3445678999999998 99999999999999999999885 369999999999999999999999998 99999
Q ss_pred eecCCC
Q 024220 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.+++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 998864
No 297
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=4.2e-15 Score=103.64 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+..+|||+|||..+++++|.++|+.||.|..+.++.+.. .|||||+|.+.++|..|+..|||..+. ++.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3568999999999999999999999999999999987654 379999999999999999999999998 99999998
Q ss_pred CCC
Q 024220 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 863
No 298
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=5.8e-15 Score=108.65 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|++|++.|++..+. +..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 35689999999999999999999999999999999988654 59999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.++...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9999753
No 299
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-15 Score=101.46 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=67.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+|+++|+++|+.||.|..|.++.+.. .|||||+|.+.++|+.|+. +++..+. |+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEE
Confidence 3458999999999999999999999999999999998754 3799999999999999999 8999988 888888
Q ss_pred ecC
Q 024220 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 84 ~~~ 86 (103)
T 1s79_A 84 LFK 86 (103)
T ss_dssp EEH
T ss_pred EEc
Confidence 754
No 300
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-15 Score=100.37 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|..||.+ .|.++.+..+ |||||+|.+.++|++|++ +++..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3456899999999999999999999999954 8998887643 599999999999999995 7999988 88999
Q ss_pred eecCCC
Q 024220 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 988754
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-14 Score=97.61 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|| .+++++|+++|.+||.|..+.+. ...|||||+|.+.++|++|+..|+|..+. ++.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEE
Confidence 345689999996 89999999999999999999885 34479999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024220 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 875443
No 302
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-15 Score=101.51 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=68.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|.. +.++.+.. .|||||+|.+.++|++|+.. ++..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcE
Confidence 3445689999999999999999999999999987 77776632 37999999999999999997 999988 889
Q ss_pred eeeecCCC
Q 024220 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987753
No 303
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.8e-15 Score=123.83 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc---Ce--e
Q 024220 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (270)
Q Consensus 2 ~~~~~~~l~v~n--l~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~--~ 74 (270)
++.++.+|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 458999999999 578899999999999999999987753 5899999999999999999999998873 45 6
Q ss_pred EEEEecC
Q 024220 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777774
No 304
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-15 Score=98.12 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=70.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||..+++++|+++|..| .|..+.++.+..+ |+|||+|.+.++|++|+. |+|..+. ++.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEE
Confidence 3456899999999999999999999999 9999999987432 699999999999999999 9999998 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9988654
No 305
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-15 Score=105.29 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceE--EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCc----cccCcc
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~----~~~~~~ 191 (270)
....+|||+|||..+++++|+++|.+||.|.. |.++.+..+ |||||+|.+. +|.+|+..|+|. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45679999999999999999999999999966 899888733 6999999999 999999999999 777
Q ss_pred cccceeeecCCC
Q 024220 192 ARGRITVKRYDR 203 (270)
Q Consensus 192 ~~~~i~v~~~~~ 203 (270)
++.|.|.++..
T Consensus 97 -gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 -GKTINVEFAKG 107 (131)
T ss_dssp -GCCCCCEECCC
T ss_pred -CEEEEEEECCC
Confidence 99999999865
No 306
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=101.08 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=67.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.++. .|||||+|.+.++|++|++.|||..+. ++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 457999999999999999999999999999999988754 369999999999999999999999988 777766
Q ss_pred ecC
Q 024220 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 307
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=105.33 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
......++|||+|||..+++++|+++|..||. |..|.++.+..+ |||||+|.+.++|++|++ +++..+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---- 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---- 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC----
Confidence 34456789999999999999999999999999 888999887653 699999999999999999 9999998
Q ss_pred ccceeeecCC
Q 024220 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999998775
No 308
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.6e-15 Score=100.97 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|..||.|..+.+.. ..|||||+|.+.++|..|+..|+|..+. ++.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 3457999999999999999999999999999999884 3479999999999999999999999998 899999887
Q ss_pred C
Q 024220 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 309
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=1.7e-15 Score=105.34 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCC-----CCHHHHHHHhhcccceEEEEEecC-------CCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 4 RFSRTIYVGNLPSD-----IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nl~~~-----~t~~~L~~~F~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++++|+|.|+-.. -.++||++.|++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47899999999432 246899999999999999999543 235699999999999999999999999999
Q ss_pred CeeEEEEecCC
Q 024220 72 GCRLRVELAHG 82 (270)
Q Consensus 72 g~~l~v~~~~~ 82 (270)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998753
No 310
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=105.07 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.++. .|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344678999999999999999999999999999999987743 369999999999999999999999998 899
Q ss_pred eeeecC
Q 024220 196 ITVKRY 201 (270)
Q Consensus 196 i~v~~~ 201 (270)
|.|.++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 988764
No 311
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=3.5e-14 Score=100.31 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC---CCcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS---EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. ..|||||+|.+.++|++|++.|+|..+. ++.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 34567899999999999999999999999999999998876 2369999999999999999999999998 8999
Q ss_pred eeecCCC
Q 024220 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998864
No 312
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=104.57 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..++|||+|||..+++++|+++|.+||.|..+.++.. .+||||+|.+.++|+.|++.|||..+. ++.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 4579999999999999999999999999999988753 469999999999999999999999998 9999999876
Q ss_pred C
Q 024220 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 313
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=2.4e-14 Score=100.09 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=66.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcE-EEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...|||+||++.+++++|.++|++||.|..|.++.. .|+ |||+|.+.++|..|++.|||..+.+. .+.|+|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEEEec
Confidence 356789999999999999999999999999998764 375 99999999999999999999999720 2689999886
Q ss_pred C
Q 024220 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 314
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=6.6e-16 Score=110.58 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=67.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|+.|| |..|.++.+.. .|||||+|.+.++|++|+ .+++..+. ++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEE
Confidence 34567999999999999999999999999 77899887754 369999999999999999 79999998 88999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 8887643
No 315
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.6e-15 Score=98.93 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC-ccccCcccccceeeec
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g-~~~~~~~~~~~i~v~~ 200 (270)
...+|||+|||..+++++|+++|.+||. |..+.+.. .|||||+|.+.++|++|++.||| ..+. ++.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4479999999999999999999999999 55555543 36999999999999999999999 8888 99999999
Q ss_pred CCCCCCC
Q 024220 201 YDRSPSR 207 (270)
Q Consensus 201 ~~~~~~r 207 (270)
+.....+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 8754443
No 316
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=4.5e-16 Score=106.08 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=58.6
Q ss_pred cCCCCCCCHHHHHHHh------------hcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEE
Q 024220 12 GNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F------------~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|||..+++++|.+.| ++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455677666666 99999999999653 467999999999999999999999999999999999
Q ss_pred Eec
Q 024220 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=101.55 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccc-cCcccccceee
Q 024220 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~-~~~~~~~~i~v 198 (270)
.+..+||| +||+..+++++|+++|++||.|..+.++.+ .|||||+|.+.++|++|++.|||..+ .....+..+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 35678999 779999999999999999999999888754 47999999999999999999999988 32222788888
Q ss_pred ecCCC
Q 024220 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 88764
No 318
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-14 Score=96.77 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|+.. +..+. ++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID----GRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET----TEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC----CeE
Confidence 3445689999999999999999999999999999999988653 5999999999999999994 55666 899
Q ss_pred eeeecCCCC
Q 024220 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 999998643
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=105.13 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeC-CC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+.....+|||+|||..+++++|+++|..||.|..+.++.+ .. .|||||+|.+.++|++|++ |+|..+. ++.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 3456689999999999999999999999999877433332 22 3699999999999999999 9999998 899
Q ss_pred eeeecCC
Q 024220 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9998775
No 320
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=1.1e-14 Score=96.69 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|+ .|+|..+. ++.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 47999999999999999999999999999999988753 369999999999999999 99999998 9999999
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8864
No 321
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=2.1e-15 Score=101.46 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.||+..+. ++.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 3589999999999999999999999999987777665443 69999999999999999999999998 999999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 322
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.6e-15 Score=102.46 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=68.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..++|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|+ .|+|..+. ++.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEEE
Confidence 457999999999999999999999999999999987764 369999999999999999 99999998 899999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.++.
T Consensus 99 ~~a~ 102 (114)
T 2cq4_A 99 QASQ 102 (114)
T ss_dssp EEHH
T ss_pred EecC
Confidence 8875
No 323
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=101.30 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.| .|..|.++.+.. .|||||+|.+.++|++|+ .+++..+. ++.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 345799999999999999999999999 899999987754 379999999999999999 69999998 899999
Q ss_pred ecCC
Q 024220 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7765
No 324
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=107.03 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+|||..+++++|+++|..|| .|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999998 9999
Q ss_pred eeecCC
Q 024220 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999875
No 325
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=8.9e-15 Score=100.17 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCC------CHHHHHHHHHhcCCceEEEEeeC--CCCcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 123 SEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
..++|||+|||..+ ++++|+++|++||.|..+.++.. ...|||||+|.+.++|++|+..|||..+. ++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 45799999999999 78999999999999999988832 22379999999999999999999999998 87
Q ss_pred -ceeeecCCC
Q 024220 195 -RITVKRYDR 203 (270)
Q Consensus 195 -~i~v~~~~~ 203 (270)
.|.|..+..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 899988753
No 326
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=4.5e-15 Score=95.18 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|+.||.|..+.++.++. .|||||+|.+.++|++|++ +++..+. ++.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 489999999999999999999999999999987764 3699999999999999998 9999998 888888754
No 327
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=97.07 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=61.6
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHHhcCCceEEEEeeC--CCCcEEEEEeCChhhHHHHHHhcCCccccCccccc-c
Q 024220 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (270)
Q Consensus 125 ~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~ 195 (270)
++|||+|||..+ ++++|+++|++||.|..+.++.. ...|||||+|.+.++|++|++.|||..+. ++ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 689999999999 67999999999999999988743 22379999999999999999999999998 76 6
Q ss_pred eee
Q 024220 196 ITV 198 (270)
Q Consensus 196 i~v 198 (270)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 654
No 328
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=99.46 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 3579999999999999999999999999999999887543 69999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024220 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
.++...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 998753
No 329
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=99.16 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=67.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|..|+ .+.++.+..+ |||||+|.+.++|++|++.|+|..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 345668999999999999999999999774 4555555432 69999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024220 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.+++....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999975443
No 330
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-14 Score=100.50 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=70.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|++|++. ++..+. ++.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEEE
Confidence 457999999999999999999999999999999998754 36999999999999999998 999988 999999
Q ss_pred ecCCCCC
Q 024220 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
.++....
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9987543
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=7e-15 Score=103.19 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcE-EEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....|||+||++.+++++|.++|++||.|..|.+.... .|+ |||+|.+.++|+.|++.|||..+.+ ..+.|+|.+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEEEe
Confidence 344688899999999999999999999999999887754 356 9999999999999999999999982 128899999
Q ss_pred CCC
Q 024220 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
++.
T Consensus 103 ak~ 105 (130)
T 3zzy_A 103 SKL 105 (130)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 332
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=1.2e-14 Score=102.79 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|+ .|+|..+. ++.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 357999999999999999999999999999999987643 369999999999999999 89999998 999999
Q ss_pred ecCCCC
Q 024220 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
.+++..
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998643
No 333
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=93.74 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=62.0
Q ss_pred eEEEeCCCCCCCHHH----HHHHHHhcC-CceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 126 RVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.|||.|||..+++++ |.++|++|| +|..|. +|+|||.|.+.++|..|++.|+|..+. ++.|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVF----GNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccC----CceEEEEe
Confidence 499999999999988 558999994 998872 279999999999999999999999999 99999999
Q ss_pred CCCC
Q 024220 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
++..
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9753
No 334
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=1.8e-14 Score=95.21 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=66.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|++|++ +++..+. ++.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEEE
Confidence 45689999999999999999999999999999999987653 699999999999999996 5777777 88888
Q ss_pred eecC
Q 024220 198 VKRY 201 (270)
Q Consensus 198 v~~~ 201 (270)
|+.+
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8753
No 335
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=102.64 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCc-eEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|..||.| ..|.++.+.. .|||||+|.+.++|++|++. ++..+. ++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEE
Confidence 3456899999999999999999999999999 7888887763 36999999999999999997 999998 9999
Q ss_pred eeecCC
Q 024220 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 998876
No 336
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=95.28 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCc-EEEEEeCChhhHHHHHHhcCCccccCcccccceeeecC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT-YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g-~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
...+|||+|||..+++++|+++|..||.|..| +.+..++ ||||+|.+.++|++|+. |+|..+. ++.|.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEEC
Confidence 34699999999999999999999999999987 3333333 99999999999999999 9999998 899999877
Q ss_pred CC
Q 024220 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 337
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=1.1e-14 Score=100.46 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe
Q 024220 4 RFSRTIYVGNLPSDI----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~----------t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
-++++|.|.|+-... .++||++.|++||.|.+|.|..+ .++|||||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 468899999984432 24578999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEecC
Q 024220 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 338
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=100.78 Aligned_cols=79 Identities=16% Similarity=0.397 Sum_probs=67.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-----CCcEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
......++|||+|||..+++++|+++|+.|| |..+.++.+. ..|||||+|.+.++|.+|+ .|+|..+. +
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----T
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----C
Confidence 3345568999999999999999999999999 9999998776 2379999999999999999 89999998 8
Q ss_pred cceeeecCCC
Q 024220 194 GRITVKRYDR 203 (270)
Q Consensus 194 ~~i~v~~~~~ 203 (270)
+.|.|..+..
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9999988864
No 339
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=9.5e-15 Score=116.74 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCC-cccc---CeeEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDG-YNFD---GCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~---g~~l~v 77 (270)
.++++|||+|||..+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4578999999999999999999999999999999954 467789999999999999999999954 4444 999999
Q ss_pred EecCCC
Q 024220 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998765
No 340
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-15 Score=94.46 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
++|||+|||..+++++|+++|++||.|..+.++.++. .|+|||+|.+.++|++|++.++ ..+. |+.|.|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 3799999999999999999999999999999988764 3699999999999999999999 8887 88888876
Q ss_pred C
Q 024220 201 Y 201 (270)
Q Consensus 201 ~ 201 (270)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 341
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=6.8e-15 Score=99.32 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHHhcCCceEEEEeeC-CCCcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
..+..+|||+|||..+++++|+ ++|..||.|..+.+... ...|||||+|.+.++|+.|+..|+|..+. ++.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcE
Confidence 3456899999999999999999 99999999999988742 22369999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024220 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999988653
No 342
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=5.6e-15 Score=98.30 Aligned_cols=74 Identities=27% Similarity=0.362 Sum_probs=67.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.+ |.+|+..|+|..+. ++.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 4799999999999999999999999999999987754 369999999999 99999999999998 99999998
Q ss_pred CCC
Q 024220 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 864
No 343
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.6e-14 Score=96.54 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEe-eCC----CCcEEEEEeCChhhHHHHHHhcC--CccccCccccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDS----EGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~----~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~~ 194 (270)
+.++|||+|||..+++++|+++|..||. |..+.++ .+. ..|||||+|.+.++|+.|++.|+ +..+. ++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4589999999999999999999999998 9999887 443 33699999999999999999996 57887 89
Q ss_pred ceeeecCCCC
Q 024220 195 RITVKRYDRS 204 (270)
Q Consensus 195 ~i~v~~~~~~ 204 (270)
.|.|.++...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 9999998743
No 344
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=98.29 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=68.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|..||.|..+ .......|||||+|.+.++|++|+..|+|..+. ++.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999988777 333333479999999999999999999999998 99999999
Q ss_pred CCC
Q 024220 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 345
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=96.87 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEee----CCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR----DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~----~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|.. .++. ....|||||+|.+.++|++|++ |+|..+. ++.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEE
Confidence 35689999999999999999999999998766 3332 2345799999999999999999 9999998 99999
Q ss_pred eecCCCC
Q 024220 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9998653
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=1.5e-14 Score=101.57 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=65.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCce--EEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......+|||+|||+.+++++|+++|+.| .|. .|.++.+.. .|||||+|.+.++|++|++. ++..+. ++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 34456889999999999999999999999 676 788887654 37999999999999999985 778887 88
Q ss_pred ceeeecCC
Q 024220 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 88887653
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=100.22 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCccccc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
....++|||+|||..+++++|+++|..||. |..+.++.+.. .|||||+|.+.++|++|+. +++..+. ++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----Ce
Confidence 345689999999999999999999999988 88899887754 3699999999999999999 9999988 88
Q ss_pred ceeeecCC
Q 024220 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99888765
No 348
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=2.7e-14 Score=98.37 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
....++|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|+..+ +..+. |+.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----SKTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----CEEE
Confidence 34568999999999999999999999999999999988754 369999999999999999986 47777 9999
Q ss_pred eeecCCCC
Q 024220 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|..+...
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99988644
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=4.2e-14 Score=105.90 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+.++|||+|||..+++++|+++|+.||.|..|.+..+.. .|||||+|.+.++|++|++.|+|..+. ++.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 34568999999999999999999999999999999988752 369999999999999999999999998 89999
Q ss_pred eecCC
Q 024220 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.++.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98875
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=3.6e-14 Score=93.69 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhc----C-------CceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
...+|||+|||..+++++|+++|..| | .|..+.+..+ .|||||+|.+.++|++|+ .|+|..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~--- 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ--- 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC---
Confidence 45899999999999999999999999 8 8999888876 479999999999999999 99999998
Q ss_pred cccceeeec
Q 024220 192 ARGRITVKR 200 (270)
Q Consensus 192 ~~~~i~v~~ 200 (270)
++.|.|..
T Consensus 79 -g~~l~V~r 86 (87)
T 2hzc_A 79 -GQSLKIRR 86 (87)
T ss_dssp -TEECEEEC
T ss_pred -CeEEEEeC
Confidence 88888763
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=3.1e-14 Score=111.10 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccccCcccccce
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+||+..+++++|+++|..|| .|..|.|+.++.+ |||||+|.+.++|++||+.||+..|. ++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 457899999999999999999999999 9999999988654 59999999999999999999999998 9999
Q ss_pred eeecCC
Q 024220 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|.++.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=102.98 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEe-eCCCCcEEEEEeCChhhHHHHHHhcCCccccCccc
Q 024220 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVS-RDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.+..+|||+|||..+++++|+++|..||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 35589999999999999999999999998865 3333 3344479999999999999999999999998
Q ss_pred ccceeeecCCCCCC
Q 024220 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|.+++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999875433
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=1.5e-14 Score=95.75 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|||+|||..+++++|+++|.+| .|..+.+. ...|||||+|.+.++|++|++.|+|..+. ++.|.|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcCC
Confidence 4789999999999999999999999 99998885 44479999999999999999999999998 99999998864
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=6.2e-14 Score=98.28 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=68.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|+ .+++++|+++|+.||.|..|.+. ...|||||+|.+.++|++|++.|+|..+. ++.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 345689999996 69999999999999999999887 34479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024220 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87543
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.9e-15 Score=103.06 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=66.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCc----eEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.....+|||+|||+.+++++|+++|+.||.| ..|.++.+..+ |||||+|.+.++|++|++. ++..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3456899999999999999999999999975 57888876433 6999999999999999996 998887 8
Q ss_pred cceeeecCC
Q 024220 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 888887664
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=3.6e-14 Score=90.94 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=62.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++. ++..+. ++.+.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEE
Confidence 589999999999999999999999999999987654 36999999999999999995 888877 88887765
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=7.9e-14 Score=92.28 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++ +++..+. ..++.+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3445689999999999999999999999999999999886 45799999999999983 5565432 237788888
Q ss_pred cCCC
Q 024220 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 7753
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=1e-13 Score=94.36 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..++|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|++|+. ++..+. |..|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEEE
Confidence 4589999999999999999999999999999999987632 699999999999999999 777776 7777766
Q ss_pred cCC
Q 024220 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 82 ~a~ 84 (102)
T 2xs2_A 82 PAI 84 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 654
No 359
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-15 Score=103.75 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=71.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccccCc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
+..+|||+|||..+++++|+++|+.||.|.. +.++.+.. .|||||+|.+.++|++|+..|+|..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 83 (116)
Confidence 4579999999999999999999999999988 78877643 369999999999999999999999998
Q ss_pred ccccceeeecCCCCCCC
Q 024220 191 WARGRITVKRYDRSPSR 207 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~~r 207 (270)
++.|.|..+.....+
T Consensus 84 --g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 --GNPIKVSFATRRADF 98 (116)
Confidence 999999998754433
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=91.73 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=61.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|++| ++..+. ..+..|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce--eCCEEEEEEecC
Confidence 3579999999999999999999999999999999876 457999999999999753 444331 227888888876
Q ss_pred CC
Q 024220 203 RS 204 (270)
Q Consensus 203 ~~ 204 (270)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-12 Score=89.83 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCC-----------HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCc
Q 024220 122 HSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.+..+|+|.||..... +++|+++|.+||.|..+.+......|||||+|.+.++|++|+..|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 4568999999954432 579999999999999997754445589999999999999999999999998
Q ss_pred ccccceeeecCCC
Q 024220 191 WARGRITVKRYDR 203 (270)
Q Consensus 191 ~~~~~i~v~~~~~ 203 (270)
++.|.|.++..
T Consensus 91 --gr~l~v~~a~~ 101 (112)
T 2dit_A 91 --GRQITAQAWDG 101 (112)
T ss_dssp --TEECEEEECCS
T ss_pred --CcEEEEEEeCC
Confidence 99999999864
No 362
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.7e-13 Score=91.85 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC-HHHHHHHHHhcC--CccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
.+.+.|+|+||+.. ++.++|+++|++||+|..|.+..+ ..+|||.|.+ +++|..|+..|| +..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 56789999999999 999999999999999999999765 3479999999 899999999995 6889999999987
Q ss_pred cC
Q 024220 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.1e-13 Score=92.57 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=66.2
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhcCCceEEEEeeCCCC----cEEEEEeCC----hhh----HHHHHH--hcCCcc
Q 024220 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (270)
Q Consensus 125 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~----~~~----a~~a~~--~l~g~~ 186 (270)
..|||+|| |+.+++++|+++|+.||+|..+.++.|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999988 599999996 444 789988 789999
Q ss_pred ccCcccccceeeecCC
Q 024220 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. |+.|+|...+
T Consensus 83 I~----Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IM----GFKFEVILNK 94 (136)
T ss_dssp ET----TEEEEEEECC
T ss_pred ec----CcEEEEEECc
Confidence 99 9999998765
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=1.3e-12 Score=99.23 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=65.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeec
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+|||+|||..+++++|+++|+.||.|..|.+..+..+ |||||+|.+.++|++|+..++ ..+. |+.|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEEE
Confidence 479999999999999999999999999999999886543 699999999999999998665 4676 88888887
Q ss_pred CC
Q 024220 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 64
No 365
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=93.46 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=55.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-------CCcEEEEEeCChhhHHHHHHhc---CCccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-------EGTYGVVDYTNPEDMKYAIRKL---DDTEF 187 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l---~g~~~ 187 (270)
..++|||+|||..+++++|+++|++||.|. +.++.+. ..|||||+|.+.++|++|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 357999999999999999999999999999 7776653 3479999999999999999988 66544
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=3.3e-13 Score=104.86 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCC---------CHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc----
Q 024220 122 HSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR---- 188 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~---- 188 (270)
....+|||+||+..+ ++++|+++|++||.|..|.++..+ |||||+|.+.++|+.|++.|+|..+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 356899999999998 799999999999999999998754 69999999999999999999999991
Q ss_pred ----CcccccceeeecCCCCC
Q 024220 189 ----NPWARGRITVKRYDRSP 205 (270)
Q Consensus 189 ----~~~~~~~i~v~~~~~~~ 205 (270)
+...++.|.|.++...+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 11138999999987543
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=1.1e-12 Score=89.39 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=66.3
Q ss_pred CcceEEEeCCCC-----CCCHHHHHHHHHhcCCceEEEEeeCC-----CCcEEEEEeCChhhHHHHHHhcCCccccCccc
Q 024220 123 SEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 123 ~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
+..+|+|.|+.. ..++++|+++|++||.|..+.++.++ ..|+|||+|.+.++|.+|++.|||..+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~---- 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG---- 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET----
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC----
Confidence 457999999963 23789999999999999999998764 2479999999999999999999999998
Q ss_pred ccceeeecCC
Q 024220 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 83 Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 GRVVKACFYN 92 (105)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEEcC
Confidence 9999998875
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=84.25 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 3 GRFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~~~~l~v~nl~----~~~t~----~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
+.|--||+|.-++ .++-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|++ |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4667788888776 23444 679999999999999999754 38999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 024220 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998654
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=6e-12 Score=85.66 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred CcceEEEeCC--CCCCC--------HHHHHHHHHhcCCceEEEEeeCCC------CcEEEEEeCChhhHHHHHHhcCCcc
Q 024220 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 123 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
+...|.|.|+ |..+. +++|+++|++||.|..+.++.+.. .|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3568899997 33332 368999999999999999988753 3799999999999999999999999
Q ss_pred ccCcccccceeeecCC
Q 024220 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. ++.|.+.+..
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 98 9999988764
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.9e-11 Score=84.22 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=64.8
Q ss_pred CcceEEEeCCCCCCC----------HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccc
Q 024220 123 SEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
+...|.|.|+-.... +++|++.|++||.|..+.+..+...|++||+|.+.++|.+|++.|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~---- 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA---- 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET----
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 456788888743222 347899999999999999988776789999999999999999999999999
Q ss_pred ccceeeecCC
Q 024220 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999998865
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=9.6e-12 Score=86.27 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=65.3
Q ss_pred CcceEEEeCCCCC-----CCHHHHHHHHHhcCCceEEEEeeCCCC--------cEEEEEeCChhhHHHHHHhcCCccccC
Q 024220 123 SEYRVIVRGLPSS-----ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~-----~~~~~l~~~f~~~g~v~~~~~~~~~~~--------g~~fv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
+..+|+|.|+-.. -.+++|++.|++||.|..|.++.+..+ |++||+|.+.++|.+|+..|||+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 5678999998422 236889999999999999999887542 69999999999999999999999998
Q ss_pred cccccceeeecCC
Q 024220 190 PWARGRITVKRYD 202 (270)
Q Consensus 190 ~~~~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999988764
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=9.8e-12 Score=101.73 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=59.1
Q ss_pred CCCcceEEEeC--CCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 121 RHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+..+|||+| |+..+++++|+++|++||.|..|.+.. ..|||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45678999999 578999999999999999999887765 3479999999999999999999999884
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1e-11 Score=80.44 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCe
Q 024220 3 GRFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~-----~t~----~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
+.|--||+|.-++.. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+|++ |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 467789999888643 333 568999999999999999855 29999999999999999 999999999
Q ss_pred eEEEEec
Q 024220 74 RLRVELA 80 (270)
Q Consensus 74 ~l~v~~~ 80 (270)
.|+|.+.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999874
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.5e-10 Score=75.36 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=59.8
Q ss_pred ceEEEeCCC-------CCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCccccccee
Q 024220 125 YRVIVRGLP-------SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 125 ~~l~v~~l~-------~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..|.|.-.. ..+++++|+++|++||.|..|.++. ...|||||+|.+.++|+.|++.+++ +. ++.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeEE
Confidence 455565443 5689999999999999999999884 4457999999999999999998655 33 78899
Q ss_pred eecCCCCC
Q 024220 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++...+
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99886543
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=5.7e-12 Score=85.66 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=57.5
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCceEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+.||+..+++++|+++| ++||.|..+.++.+.. .|||||+|.+.++|++|+..|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 45566667777666555 9999999999988753 379999999999999999999999998 8
Q ss_pred cceeeecC
Q 024220 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|.+.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 98888765
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.9e-10 Score=78.34 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCC-hhhHHHHHHhcC--CccccCcccccc
Q 024220 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--g~~~~~~~~~~~ 195 (270)
.-..++.|+|+||+.. ++.++|+++|+.||.|.+|.+..+.. .|||.|.+ ..+|.+|+.+++ +..+. +..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----CcE
Confidence 3456799999999999 99999999999999999999998876 79999999 799999999995 55555 555
Q ss_pred eeeec
Q 024220 196 ITVKR 200 (270)
Q Consensus 196 i~v~~ 200 (270)
+++..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=3.7e-10 Score=87.78 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHhhcccceEEEEEec-------CCCCCcEEEEEECCHHHHHHHHHhcCCccccCe
Q 024220 6 SRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 6 ~~~l~v~nl~~-----~~t~~~L~~~F~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
+..+.+.|+-. .-.+++|.+.|++||.|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455555432 245688999999999999999953 236789999999999999999999999999999
Q ss_pred eEEEEecC
Q 024220 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.5e-09 Score=70.63 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+..++|-|-|||..+++..|+.|+..+ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|+|..|.|++|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 447899999999999999999999999 99999999766 5569999999999999998899999999999996
Q ss_pred e
Q 024220 79 L 79 (270)
Q Consensus 79 ~ 79 (270)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.8e-09 Score=69.64 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=59.2
Q ss_pred cceEEEeCCC----CCCCH----HHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccc
Q 024220 124 EYRVIVRGLP----SSASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 124 ~~~l~v~~l~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+.+|+|.-++ ....+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |+|.++. ++.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----CeE
Confidence 4577777665 23334 5789999999999999999974 9999999999999998 9999998 999
Q ss_pred eeeecCC
Q 024220 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|+|....
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998875
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.7e-08 Score=65.45 Aligned_cols=70 Identities=9% Similarity=0.179 Sum_probs=59.2
Q ss_pred CcceEEEeCCCCC-----CCH----HHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccc
Q 024220 123 SEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 123 ~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+..+|+|.-++.. ..+ .+|.+.|..||.|..+++..+ -+||+|.+.++|.+|++ |+|.++. +
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~----G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVK----G 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEET----T
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeC----C
Confidence 4568888877643 223 468999999999999999998 49999999999999998 9999999 9
Q ss_pred cceeeecC
Q 024220 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.++|...
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99988764
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-07 Score=61.73 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-----ccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYK-----YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~-----~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
-..+|.|.|||+.+.++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|+..|+ -..+.|.+..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 4579999999999999999999986 25999998863 679999999999999999 557889999999987
Q ss_pred cCCC
Q 024220 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
..+.
T Consensus 81 ~~~~ 84 (104)
T 2dhx_A 81 APPR 84 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=4.8e-07 Score=59.67 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEE
Q 024220 4 RFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~-t----~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-.++|+|+||+..+ . .+.++++|..|+++..+..... -.=..|.|.++++|.+|-..|++..|.|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 456899999998864 3 2567899999999999888654 2346899999999999999999999999999999
Q ss_pred ecCCC
Q 024220 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99844
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=1.5e-07 Score=72.93 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHhcCCceEEEEeeCCCC--------cEEEEEeCChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024220 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~--------g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
-.+++|.+.|.+||.|..+.+..+..+ |++||+|.+.++|.+|+..|+|+.+. |+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 356789999999999999999855332 69999999999999999999999999 9999988765
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=3.4e-06 Score=55.80 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=64.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhc-----CCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceee
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..+|-+-+||..++++.|+.+...+ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|. ++.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~----gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQ----GKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeec----CeEEEe
Confidence 5789999999999999999999999 9999998888774 6999999999999999999999999 888876
Q ss_pred ec
Q 024220 199 KR 200 (270)
Q Consensus 199 ~~ 200 (270)
..
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.10 E-value=1.2e-05 Score=52.18 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=54.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+.|.|++||+.+|++++.+.+..+..+........ ...-.-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999999988776666332 123457999999999999999999998874
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.02 E-value=1.7e-05 Score=51.40 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+.++| ++|+.+...||.++|+.||.|. |..+. -.-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE----TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc----CCeEEEEecCHHHHHHHHHhc
Confidence 356777 9999999999999999999443 33333 247999999999999999966
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=5.9e-05 Score=51.20 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccC-eeEEEEecC
Q 024220 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~~~ 81 (270)
..+.|.|-+.|+.. ...|...|++||+|.+.... .....-.|.|.+..+|++||. .||..|+| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 35789999999886 56788899999999998772 336789999999999999999 89999974 677787764
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.90 E-value=1.9e-05 Score=51.31 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+.++| ++|+.+...||.++|+.||.| .|..+.+ .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 46777 999999999999999999943 3444432 479999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.00011 Score=48.47 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=61.4
Q ss_pred ceEEEeCCCCCCC-----HHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccccCcccccceeee
Q 024220 125 YRVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~-----~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
++|+|+||+..+- .+.++++|..|+++......+.-. -..|.|.++++|.+|-..||+..+. |..+++-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFL----GKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEET----TEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceec----CceeEEE
Confidence 6899999987662 256789999999998877776643 6899999999999999999999999 8888888
Q ss_pred cCC
Q 024220 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 876
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00043 Score=45.42 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=47.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHh-----cCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRK-----AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
..+|.|.|||..+.++.|.-+|+. -|+|..++... +-|+|+|.+.+.|+..+++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 479999999999999999999987 25788887766 3899999999999999875
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.56 E-value=0.0005 Score=44.51 Aligned_cols=66 Identities=18% Similarity=0.377 Sum_probs=56.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccccCc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.+|.|.+||+.+|++++.+.+.....+.......+... .-|||.|.+.+++..-.+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 47899999999999999999999988877777665432 2899999999999999999999988733
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00012 Score=47.71 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+-.|.|+.||+.+|++++.+.++.+-++........ ...-.-|||.|.+++++....+.++|..|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 567999999999999999988887655433322211 112245899999999999999999998873
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.50 E-value=0.00077 Score=43.67 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=45.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.|. |.++.+. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999553 6666665 89999999999999998764
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.28 E-value=0.00012 Score=62.02 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.++|+|. .|..+++.+|.+.|++||+|.++.+..+. ..||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999987543 4799999999999998876
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.27 E-value=0.00099 Score=45.82 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEE-Eec---------------CC-CCCcEEEEEECCHHHHHHHHHhcC
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKI---------------PP-RPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.....|.|-+.|+..+ ..+.+.|++||.|.+-. +.. +. ...+...|+|.++.+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 3456788888876655 56778899999987621 110 00 124677899999999999999 99
Q ss_pred CccccCeeEEEEecC
Q 024220 67 GYNFDGCRLRVELAH 81 (270)
Q Consensus 67 ~~~~~g~~l~v~~~~ 81 (270)
|..|.|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888875
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0016 Score=44.19 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=51.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcccc
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...-|.|-++|... ...|..+|.+||.|..... ....+...|.|.+..+|++|+. .||..+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 45788899999885 6778889999999988776 3334699999999999999999 5888886
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.00071 Score=43.99 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=45.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.| .|.++.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999943 46666665 89999999999999999764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.71 E-value=0.002 Score=41.92 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=51.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccccCc
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
..+|.|..||+.+|++++.+.+...-.+.......+... .-|||.|.+.++...-.+.++|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 368999999999999998888876655443333332221 2799999999999999999999998743
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.87 E-value=0.0066 Score=51.56 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
...|+|. .|..+++.+|.++|++||+|..+.+..+.. .||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 3589997 799999999999999999999998887543 4999999999998877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.93 E-value=0.039 Score=37.95 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=45.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCceE-EEEee--------------CC---CCcEEEEEeCChhhHHHHHHhcCCcc
Q 024220 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~--------------~~---~~g~~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
..|.|-+.|+... ..+-++|++||.|.. +.... -+ ..+...|+|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4677888876654 456778999999866 21111 01 13588999999999999998 78888
Q ss_pred cc
Q 024220 187 FR 188 (270)
Q Consensus 187 ~~ 188 (270)
+.
T Consensus 86 i~ 87 (132)
T 3p3d_A 86 FN 87 (132)
T ss_dssp ET
T ss_pred eC
Confidence 87
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.87 E-value=0.13 Score=44.52 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
..++|+ +|+.+...+|.++|+.||.| +|.... ...|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 567776 99999999999999999954 444432 3569999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.68 E-value=0.68 Score=28.44 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=44.1
Q ss_pred eEEEcCCC-CCCCHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEecC
Q 024220 8 TIYVGNLP-SDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~v~nl~-~~~t~~~L~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|+|..-- ..+.+.+|..++..-+ .|-.|.+. -.|.||+-... .|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56664332 2378888888877544 56677775 45889988754 4677888899999999999998764
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.24 E-value=1.7 Score=37.50 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=45.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 024220 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 184 (270)
...++|+ +|..+...+|.+.|+.||.+ .|.++.+. .|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3455565 99999999999999999954 45666554 899999999999999998864
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.49 E-value=3.8 Score=25.77 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCeeEEEEe
Q 024220 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+|-|.|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++-..|+..|-+. .+.+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 568889999999999888888777777755566655 467999999999999999865322 345666665
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.30 E-value=3.4 Score=29.79 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=42.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hcccceEEEEEecCCCCCcEEEEEECC-HHHHHHHHHhcCC
Q 024220 8 TIYVGNLPS-D--------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRDG 67 (270)
Q Consensus 8 ~l~v~nl~~-~--------~t~~~L~~~F--~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~~ 67 (270)
++.|-|+|. . .+..+|.+.| ..|.++.-..+.......|+|.|+|.. -.--..|+. |..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~-fek 84 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL-FDK 84 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH-HHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH-HHH
Confidence 567788887 2 4557899977 999988776666566678999999984 444455665 443
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.96 E-value=14 Score=23.22 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=48.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 024220 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 183 (270)
..+.+-|-|+|..+-..++--.....|.-..+..+. |.|.+.|.+.++..-|+.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHH
Confidence 357889999999999999988888888777777766 479999999999999988763
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=72.28 E-value=0.77 Score=32.51 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=19.8
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEC
Q 024220 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+|+.++|...|.|+.+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5677888888988887554 899999875
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=6 Score=23.31 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=12.8
Q ss_pred cceEEEEEecCCCCCcEEEEEECC
Q 024220 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|+|..|.. .++.|||.|.|
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFED 46 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETT
T ss_pred eEEEEEec-----CCcEEEEEEcc
Confidence 45555532 36789999986
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.17 E-value=35 Score=21.42 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=37.3
Q ss_pred cCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 12 GNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-.+...++..+|.+.++. || .|..+..........-|||.+....+|.....
T Consensus 28 F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 28 FIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 346678999999988876 55 67777765544334569999998888777554
No 410
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=50.59 E-value=9.3 Score=22.58 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=9.3
Q ss_pred CCcEEEEEECC
Q 024220 44 PPCYCFVEFEN 54 (270)
Q Consensus 44 ~~g~afV~f~~ 54 (270)
..+.|+|.|.|
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 37899999986
No 411
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=49.34 E-value=9.2 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.2
Q ss_pred cceEEEEEecCCCCCcEEEEEECCH
Q 024220 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|.|..|.. .+..|||.|.|.
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEecc-----CCCEEEEEEcCC
Confidence 55555533 267899999863
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.88 E-value=38 Score=19.69 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..++.|.++.-.--...|.+.+.. ..|..+.+... .+.+.|+|.+.+....+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 357889999888778889999988 88888887432 456778888777777788743
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=47.99 E-value=32 Score=21.55 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=36.7
Q ss_pred EcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+=.+...+|.-+|.+.++. || .|..+..........-|||.+...++|.....
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 3346778999999988875 55 67777765544334569999988777665543
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=46.84 E-value=52 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.3
Q ss_pred ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024220 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
.|..+.+. ....||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 35555553 24689999999999999999887766
No 415
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=42.93 E-value=11 Score=29.56 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=26.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||+.++...|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46799999999999999999987655655544
No 416
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=39.81 E-value=47 Score=27.90 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=41.3
Q ss_pred EEEcCCCCCC----CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccccCee
Q 024220 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 9 l~v~nl~~~~----t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
-+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|+.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4688876432 135677888899999888872 345778899999999986 3444554443
No 417
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=39.75 E-value=24 Score=27.52 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||+.++...|.+++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46799999999999999999987 55554433
No 418
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=38.56 E-value=30 Score=30.91 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024220 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..+++.+--||.++|- .+|-|..+.|... .....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555557888883 7899999888432 344567899999999999988765
No 419
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=37.91 E-value=20 Score=20.50 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.7
Q ss_pred CcEEEEEECCH
Q 024220 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
...|+|.|.|.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56899999863
No 420
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=37.31 E-value=40 Score=22.07 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=27.7
Q ss_pred ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc
Q 024220 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.|..+.. .+..+||-|||=.++.++..|++.+.+..
T Consensus 40 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEe--cCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3555544 34569999999999999999998776543
No 421
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.08 E-value=79 Score=19.75 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l 182 (270)
+.|+-.+....+..+|++.++. |+ .|..+..+.-+.+ .-|+|.+....+|.....++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4556667888999999999987 45 5666665554433 37999999988888766543
No 422
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.45 E-value=71 Score=22.52 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+...+|.-||.+.++. || .|..|.........--|||.+...++|.....
T Consensus 99 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 99 IVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 45668899998888875 45 67777765433334569999988777666554
No 423
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.23 E-value=99 Score=22.21 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=33.6
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHH--HhcCCceEEEEeeCCCC--cEEEEEeCChh
Q 024220 125 YRVIVRGLPSS---------ASWQDLKDHM--RKAGDVCFAEVSRDSEG--TYGVVDYTNPE 173 (270)
Q Consensus 125 ~~l~v~~l~~~---------~~~~~l~~~f--~~~g~v~~~~~~~~~~~--g~~fv~f~~~~ 173 (270)
+.++|.|+|.. ....+|++.| ..|.++. +....+..+ |++.|+|...-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 57788888862 3446899977 8888876 444444443 68999999754
No 424
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=34.53 E-value=71 Score=22.14 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 35668888898887775 45 66777665443334569999988777766543
No 425
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.33 E-value=36 Score=26.13 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=24.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||+.++...|.+++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999999999886544544433
No 426
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.41 E-value=17 Score=28.06 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
...|+|||+.++...|.+++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987666655544
No 427
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=33.14 E-value=40 Score=21.78 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEE
Q 024220 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFV 50 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV 50 (270)
..+++.|.++|+.+|.|..-.+. -||||.
T Consensus 3 ~~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l~ 31 (105)
T 2od0_A 3 KPILKDSMKLFEALGTIKSRSMF-----GGFGLF 31 (105)
T ss_dssp CTHHHHHHHHHGGGSCCEEEEET-----TEEEEE
T ss_pred chHHHHHHHHHhccCCceEeecc-----CcEEEE
Confidence 34678899999999999998886 456653
No 428
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=33.09 E-value=83 Score=22.02 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-+...++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 35568889998887775 44 66777665443334569999987777766544
No 429
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=32.16 E-value=1.2e+02 Score=20.86 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=35.7
Q ss_pred HHHHHhhcccceEEEEEe----cCCCC--------------CcEEEEEECCHHHHHHHHHhc----------CCccccCe
Q 024220 22 EVEDLFYKYGRILDIELK----IPPRP--------------PCYCFVEFENARDAEDAIRGR----------DGYNFDGC 73 (270)
Q Consensus 22 ~L~~~F~~~G~v~~~~~~----~~~~~--------------~g~afV~f~~~~~a~~A~~~l----------~~~~~~g~ 73 (270)
.-.++|..||.+.-+..- ..++. --|.+|+|.+.+...++...+ +.+.|+|+
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kvm~DPRm~~~~~~mPFDgk 128 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGK 128 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHHHTCHHHHHTTSSCSSCTT
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhhcCccccccCCCCCCCcc
Confidence 356789999976665552 22211 138999999999988887432 23567776
Q ss_pred eEE
Q 024220 74 RLR 76 (270)
Q Consensus 74 ~l~ 76 (270)
+|.
T Consensus 129 RMI 131 (141)
T 2okq_A 129 RMI 131 (141)
T ss_dssp TCE
T ss_pred eeE
Confidence 654
No 430
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=31.46 E-value=1.3e+02 Score=21.01 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=39.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~ 181 (270)
+.|+-.+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|......
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 4566667788889999988877 45 5666665554433 3799999988888776543
No 431
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.09 E-value=1.3e+02 Score=20.79 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=40.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~ 181 (270)
+.|+-.+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|.....+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 4566667888999999998877 45 5666665554433 3799999988888776544
No 432
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=30.79 E-value=93 Score=20.17 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHhhcccceEEEEEecCCC-CCcEEEEEECC
Q 024220 22 EVEDLFYKYGRILDIELKIPPR-PPCYCFVEFEN 54 (270)
Q Consensus 22 ~L~~~F~~~G~v~~~~~~~~~~-~~g~afV~f~~ 54 (270)
+|.+.+..+| |.+..|...+. ..=|+++++.+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 4666777887 67777755443 34689999988
No 433
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=30.19 E-value=34 Score=26.21 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEE
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~ 36 (270)
..+.|+|||+.++...|.+++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 358899999999999999999875444443
No 434
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=30.00 E-value=61 Score=22.74 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024220 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 35567888888877765 44 66777665544444569999998877776544
No 435
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=29.72 E-value=1.4e+02 Score=20.80 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CceEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 024220 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~ 181 (270)
+.|+-.+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|......
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 4556667788899999998877 45 5666665554433 3799999988888776544
No 436
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=29.59 E-value=24 Score=21.41 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=8.3
Q ss_pred CcEEEEEECC
Q 024220 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+|||||+=.+
T Consensus 12 KGfGFI~~~d 21 (74)
T 2kcm_A 12 KKYGFIQGDD 21 (74)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998654
No 437
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=29.40 E-value=35 Score=28.50 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred EEcCCCCC---CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 10 YVGNLPSD---IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 10 ~v~nl~~~---~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+|||+..- -....+.++..+||+|..+.+- +.=+|...+++.+..++. -++..+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhc
Confidence 45665422 2344577888899999888772 223566778888888875 3444443
No 438
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=29.13 E-value=32 Score=29.70 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.2
Q ss_pred HHHHHh--hcccceEEEEEecCCCC--CcEEEEEECCHHHHHHHH
Q 024220 22 EVEDLF--YKYGRILDIELKIPPRP--PCYCFVEFENARDAEDAI 62 (270)
Q Consensus 22 ~L~~~F--~~~G~v~~~~~~~~~~~--~g~afV~f~~~~~a~~A~ 62 (270)
+|..+| +.+|-|..+.+.....+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456667 36899999988443322 356789999988876644
No 439
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=28.23 E-value=26 Score=20.67 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=7.5
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 kGfGFI~~~ 21 (67)
T 3cam_A 13 KGFGFITPD 21 (67)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEecC
Confidence 899999854
No 440
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=28.01 E-value=26 Score=20.52 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=7.5
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 kGfGFI~~~ 21 (66)
T 1c9o_A 13 KGYGFIEVE 21 (66)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEecC
Confidence 899999854
No 441
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.85 E-value=80 Score=23.92 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCC--HHHHHHHhh--------ccc-----ceEEEEEec---C--CCCCcEEEEEECCHH---HHHHHH
Q 024220 6 SRTIYVGNLPSDIR--EYEVEDLFY--------KYG-----RILDIELKI---P--PRPPCYCFVEFENAR---DAEDAI 62 (270)
Q Consensus 6 ~~~l~v~nl~~~~t--~~~L~~~F~--------~~G-----~v~~~~~~~---~--~~~~g~afV~f~~~~---~a~~A~ 62 (270)
-++|.|-+||.... +.-+..+|. ..+ .|..+.-.. + ......-.|.|.... -..+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36899999999876 443444443 222 123332211 0 011234566776555 445555
Q ss_pred HhcCCccccCeeEEEEecC
Q 024220 63 RGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 63 ~~l~~~~~~g~~l~v~~~~ 81 (270)
...+...+.|.+|.+...-
T Consensus 132 R~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HTTSCEEETTEEEEEEECC
T ss_pred HHhcccccCCCceEEeCCC
Confidence 5566788899999987654
No 442
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.67 E-value=37 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=15.6
Q ss_pred EcCCCCCCCHHHHHHHh-hcccc
Q 024220 11 VGNLPSDIREYEVEDLF-YKYGR 32 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F-~~~G~ 32 (270)
|.+|.+.+|..||...+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 45788889999988855 44453
No 443
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.61 E-value=46 Score=27.12 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 024220 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~ 29 (270)
...|+|||++++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999999875
No 444
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.17 E-value=92 Score=17.75 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=42.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC----CHHHHHHHHHhc
Q 024220 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
.++.|.++.-.--...|.+.+.....|..+.+... .+-+.|+|. +.+....++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888888877777888999998877888887433 456888884 567777777743
No 445
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=26.79 E-value=28 Score=20.92 Aligned_cols=9 Identities=44% Similarity=0.641 Sum_probs=7.4
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+-.
T Consensus 13 kGfGFI~~~ 21 (73)
T 3a0j_A 13 KGYGFIERE 21 (73)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEecC
Confidence 899999854
No 446
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.22 E-value=67 Score=23.75 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccc
Q 024220 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
|..+.. .+..+||-|||=..+.++..|++.+.+....
T Consensus 139 I~Si~~--~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQ--RDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEEC--CTTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEe--cCCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 444433 3456999999999999999999988876443
No 447
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=25.97 E-value=1.1e+02 Score=18.43 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC----CHHHHHHHHHhc
Q 024220 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
..+|.|.++....-...|...+.....|..+.+... .+.+.|.|. +.+....++..+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 346788888766666778888888878888888543 467888885 346666777744
No 448
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.82 E-value=39 Score=20.40 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=8.0
Q ss_pred CcEEEEEECC
Q 024220 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+|||||+=.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998654
No 449
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=25.78 E-value=31 Score=20.24 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=7.7
Q ss_pred CcEEEEEEC
Q 024220 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+-.
T Consensus 12 kGfGFI~~~ 20 (66)
T 1g6p_A 12 KGYGFITKD 20 (66)
T ss_dssp TTEEEEEET
T ss_pred CCEEEEecC
Confidence 899999855
No 450
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=25.19 E-value=95 Score=20.03 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=41.1
Q ss_pred CeEEEcCCCCCCCHHH--HHHHhh--------ccc-----ceEEEEEecC----C-CCCcEEEEEECCHH---HHHHHHH
Q 024220 7 RTIYVGNLPSDIREYE--VEDLFY--------KYG-----RILDIELKIP----P-RPPCYCFVEFENAR---DAEDAIR 63 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~--L~~~F~--------~~G-----~v~~~~~~~~----~-~~~g~afV~f~~~~---~a~~A~~ 63 (270)
+.|.|-+||..-.+.. +..+|. ..+ .|..+.-... . .....-.|.|.... -..+|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6799999999733222 333332 223 2444443211 1 12234567776554 4555555
Q ss_pred hcCCccccCeeEEEEe
Q 024220 64 GRDGYNFDGCRLRVEL 79 (270)
Q Consensus 64 ~l~~~~~~g~~l~v~~ 79 (270)
..+...+.|.+|.+..
T Consensus 84 ~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHCCEEETTEEEEEEE
T ss_pred HhCceeeCCcceeecC
Confidence 5667888999998853
No 451
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=25.04 E-value=19 Score=21.74 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=13.8
Q ss_pred CHHHHHHHhhcccceEEE
Q 024220 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~ 36 (270)
|-=||.+++.+||.|..+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999976543
No 452
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=24.03 E-value=1.2e+02 Score=19.24 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=36.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccc---eEEEEEec-CCCCCcEEEEEEC--CHHHHHHHHHhcC
Q 024220 8 TIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI-PPRPPCYCFVEFE--NARDAEDAIRGRD 66 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~-~~~~~g~afV~f~--~~~~a~~A~~~l~ 66 (270)
.|.|.-....+.+..|-++...||- |..-.|.. .+..-|.-+|++. +.++..+|+..|.
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 3444433445667778888888873 33444322 3345677788887 4677788887664
No 453
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=23.78 E-value=1.5e+02 Score=21.54 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=27.0
Q ss_pred eEEEcCCCCCCCHHH--------HHHHhhcccceEEEEEecCCCCCcEEEEEE
Q 024220 8 TIYVGNLPSDIREYE--------VEDLFYKYGRILDIELKIPPRPPCYCFVEF 52 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~--------L~~~F~~~G~v~~~~~~~~~~~~g~afV~f 52 (270)
.|.| -||..++.++ +.++|..+|-|.++.|+.++.....|-|-|
T Consensus 73 e~~i-ALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~ 124 (185)
T 2ns6_A 73 EVEF-ALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMI 124 (185)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEE
T ss_pred EEEE-ECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEE
Confidence 3444 6899988887 444556678788888875332233444443
No 454
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=23.63 E-value=73 Score=27.12 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024220 14 LPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 14 l~~~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+.++.+.-+|..+|- .+|-|..+.+... ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 344444446677664 5678888888432 333467889999999999988765
No 455
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=23.38 E-value=53 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHhh----cccceEEEEEecCC--CCCcEEEEEECCHHHHHHHHHhcC
Q 024220 14 LPSDIREYEVEDLFY----KYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 l~~~~t~~~L~~~F~----~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++...+.-+|..+|- .+|-|..+.+.... .....+++.|.+.++|..|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 344434446777664 56889998884432 334578899999999999887553
No 456
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.24 E-value=36 Score=20.84 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=8.0
Q ss_pred CCcEEEEEEC
Q 024220 44 PPCYCFVEFE 53 (270)
Q Consensus 44 ~~g~afV~f~ 53 (270)
.+||+||+=.
T Consensus 19 ~kGfGFI~~~ 28 (79)
T 1h95_A 19 RNGYGFINRN 28 (79)
T ss_dssp TTTEEEEEEG
T ss_pred CCCcEEEecC
Confidence 3899999854
No 457
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.24 E-value=1.1e+02 Score=20.92 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.8
Q ss_pred EcCCCCCCCHHHHHHHhh-ccc--ceEEEEE-ec-----------C-CCCCcEEEEEECC
Q 024220 11 VGNLPSDIREYEVEDLFY-KYG--RILDIEL-KI-----------P-PRPPCYCFVEFEN 54 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F~-~~G--~v~~~~~-~~-----------~-~~~~g~afV~f~~ 54 (270)
|-++..-++++++.+++. .++ .|..+.+ +. + ....+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 556677799999999995 344 6777666 11 2 3345777888765
No 458
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.99 E-value=56 Score=16.69 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHhhcc
Q 024220 16 SDIREYEVEDLFYKY 30 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~ 30 (270)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 358999999999865
No 459
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.91 E-value=37 Score=20.24 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=12.7
Q ss_pred ccceEEEEEecCCCCCcEEEEEECC
Q 024220 30 YGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 30 ~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
.|.|+.+.- .+||+||+-.+
T Consensus 7 ~G~Vk~fn~-----~kGfGFI~~~~ 26 (71)
T 3i2z_B 7 KGNVKWFNE-----SKGFGFITPED 26 (71)
T ss_dssp EEEEEEEET-----TTTEEEEEETT
T ss_pred cEEEEEEEC-----CCCcEEEecCC
Confidence 466655432 38999998653
No 460
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=22.82 E-value=43 Score=23.40 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=8.4
Q ss_pred CcEEEEEECC
Q 024220 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+|||||+-.+
T Consensus 74 KGfGFI~~dd 83 (147)
T 3aqq_A 74 KGHGFITPAD 83 (147)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEeccCC
Confidence 8999998764
No 461
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.74 E-value=49 Score=14.71 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.4
Q ss_pred CCHHHHHHHhhccc
Q 024220 18 IREYEVEDLFYKYG 31 (270)
Q Consensus 18 ~t~~~L~~~F~~~G 31 (270)
+.-.++..+|..+|
T Consensus 12 taikqvkklfkkwg 25 (26)
T 1ytr_A 12 TAIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 34567888998876
No 462
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.50 E-value=1.4e+02 Score=19.45 Aligned_cols=45 Identities=7% Similarity=-0.021 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhhc-cc---ceEEEEEecC----CCCCcEEEEEECCHHHHHHH
Q 024220 16 SDIREYEVEDLFYK-YG---RILDIELKIP----PRPPCYCFVEFENARDAEDA 61 (270)
Q Consensus 16 ~~~t~~~L~~~F~~-~G---~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A 61 (270)
...+..+|++.+.. |+ .+.-|.=..+ +.+.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677777776653 44 2222222222 345566654 7777777653
No 463
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.16 E-value=38 Score=21.40 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=7.2
Q ss_pred CCcEEEEEE
Q 024220 44 PPCYCFVEF 52 (270)
Q Consensus 44 ~~g~afV~f 52 (270)
.+||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 389999964
No 464
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.42 E-value=57 Score=20.11 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.5
Q ss_pred cCCCCCCCHHHHHHHhhccc
Q 024220 12 GNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F~~~G 31 (270)
|.|+..+|+++|.+++.+..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67888999999999998763
No 465
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=20.83 E-value=65 Score=19.09 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=8.6
Q ss_pred CcEEEEEECCH
Q 024220 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
+.-|||.|.|.
T Consensus 41 ~~~ClV~FeD~ 51 (69)
T 2xk0_A 41 SDQYLIRFDDQ 51 (69)
T ss_dssp SSCEEEEETTC
T ss_pred CceEEEEecCC
Confidence 66799999863
Done!