Query 024221
Match_columns 270
No_of_seqs 305 out of 2665
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.4E-33 1.4E-37 229.3 20.9 152 5-175 106-264 (346)
2 KOG0105 Alternative splicing f 100.0 9.1E-30 2E-34 183.2 21.2 186 1-189 1-193 (241)
3 TIGR01645 half-pint poly-U bin 100.0 3.1E-30 6.8E-35 224.0 20.6 170 5-186 106-282 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.2E-30 1.3E-34 216.1 20.5 160 5-185 2-168 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-29 5.9E-34 219.1 21.3 170 4-185 87-263 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 6.8E-30 1.5E-34 194.3 14.4 168 8-180 64-234 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-28 3.3E-33 207.6 23.3 179 5-187 88-348 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-28 3.1E-33 214.3 21.8 160 5-174 1-162 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 3E-28 6.5E-33 217.3 19.9 150 8-174 2-157 (562)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-27 2.4E-32 208.8 22.0 170 4-175 273-465 (481)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 2.5E-27 5.5E-32 205.7 20.7 174 6-187 58-306 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.2E-27 9.1E-32 208.1 21.7 169 3-175 172-366 (509)
13 KOG0117 Heterogeneous nuclear 100.0 1.2E-27 2.6E-32 193.8 16.4 172 6-181 83-328 (506)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-26 2.6E-31 205.1 21.4 172 5-176 294-494 (509)
15 KOG0109 RNA-binding protein LA 100.0 7.1E-28 1.5E-32 185.1 11.1 142 7-178 3-144 (346)
16 TIGR01628 PABP-1234 polyadenyl 99.9 2.1E-26 4.7E-31 205.4 18.0 170 5-175 177-355 (562)
17 KOG0145 RNA-binding protein EL 99.9 1.2E-26 2.5E-31 175.9 13.7 163 4-187 39-208 (360)
18 KOG0131 Splicing factor 3b, su 99.9 2.3E-26 5.1E-31 165.3 13.6 165 4-186 7-179 (203)
19 KOG0144 RNA-binding protein CU 99.9 1.3E-26 2.7E-31 187.1 13.1 168 5-191 33-209 (510)
20 TIGR01622 SF-CC1 splicing fact 99.9 4.8E-25 1E-29 192.5 22.0 172 6-177 186-441 (457)
21 KOG0127 Nucleolar protein fibr 99.9 2.7E-25 5.9E-30 184.3 15.0 177 6-186 5-194 (678)
22 KOG0127 Nucleolar protein fibr 99.9 1E-23 2.2E-28 175.0 18.9 162 5-166 116-354 (678)
23 KOG0145 RNA-binding protein EL 99.9 1.2E-23 2.5E-28 159.7 16.0 170 6-175 127-349 (360)
24 KOG0106 Alternative splicing f 99.9 5.2E-24 1.1E-28 161.0 11.4 163 7-178 2-165 (216)
25 KOG0123 Polyadenylate-binding 99.9 1.1E-22 2.4E-27 169.3 16.5 140 7-175 2-144 (369)
26 KOG0124 Polypyrimidine tract-b 99.9 2.5E-23 5.4E-28 165.0 11.6 159 7-174 114-280 (544)
27 KOG0107 Alternative splicing f 99.9 2.2E-22 4.8E-27 144.0 14.4 74 108-186 10-83 (195)
28 KOG0110 RNA-binding protein (R 99.9 7.2E-22 1.6E-26 168.9 13.3 164 9-186 518-691 (725)
29 KOG4207 Predicted splicing fac 99.9 1.4E-21 3E-26 143.6 12.7 80 5-84 12-94 (256)
30 KOG4206 Spliceosomal protein s 99.9 8.7E-21 1.9E-25 142.1 16.8 168 4-172 7-209 (221)
31 KOG0107 Alternative splicing f 99.9 1.6E-20 3.4E-25 134.6 15.7 78 5-84 9-86 (195)
32 KOG0123 Polyadenylate-binding 99.9 2E-20 4.2E-25 156.0 15.2 159 3-173 73-235 (369)
33 TIGR01645 half-pint poly-U bin 99.8 2.6E-19 5.7E-24 156.3 21.8 77 5-81 203-282 (612)
34 KOG0148 Apoptosis-promoting RN 99.8 1.2E-20 2.5E-25 144.2 11.1 139 1-189 1-143 (321)
35 KOG1457 RNA binding protein (c 99.8 8.5E-20 1.9E-24 135.8 14.6 169 5-173 33-275 (284)
36 KOG4676 Splicing factor, argin 99.8 1.2E-21 2.7E-26 156.5 4.8 166 5-172 6-214 (479)
37 KOG0147 Transcriptional coacti 99.8 2.1E-21 4.6E-26 161.8 5.8 168 4-177 177-351 (549)
38 KOG0147 Transcriptional coacti 99.8 1E-19 2.2E-24 151.9 13.3 171 7-178 279-522 (549)
39 PLN03134 glycine-rich RNA-bind 99.8 2.8E-19 6E-24 130.3 13.0 81 5-85 33-116 (144)
40 KOG0113 U1 small nuclear ribon 99.8 5.3E-19 1.2E-23 137.0 14.9 83 2-84 97-182 (335)
41 KOG4205 RNA-binding protein mu 99.8 1.7E-19 3.8E-24 145.2 11.3 159 2-175 2-167 (311)
42 KOG0144 RNA-binding protein CU 99.8 3.3E-19 7.2E-24 144.5 12.1 76 6-81 124-204 (510)
43 KOG0146 RNA-binding protein ET 99.8 9.9E-19 2.1E-23 133.5 12.5 169 5-173 18-354 (371)
44 KOG0121 Nuclear cap-binding pr 99.8 3.7E-19 8E-24 120.9 7.0 79 4-82 34-115 (153)
45 KOG1548 Transcription elongati 99.8 6.4E-17 1.4E-21 128.0 18.2 178 4-181 132-349 (382)
46 KOG4207 Predicted splicing fac 99.8 2.1E-17 4.4E-22 121.8 13.5 73 103-175 8-84 (256)
47 KOG4211 Splicing factor hnRNP- 99.8 3.5E-17 7.6E-22 135.1 16.0 164 5-183 9-177 (510)
48 KOG0110 RNA-binding protein (R 99.8 1.6E-17 3.4E-22 142.7 13.9 174 4-180 383-594 (725)
49 PLN03120 nucleic acid binding 99.7 1.4E-17 3.1E-22 129.5 11.3 80 5-85 3-82 (260)
50 KOG1190 Polypyrimidine tract-b 99.7 1.4E-16 3E-21 128.6 16.5 167 6-174 297-480 (492)
51 KOG4212 RNA-binding protein hn 99.7 1.5E-16 3.3E-21 129.4 16.3 168 6-173 44-283 (608)
52 PF00076 RRM_1: RNA recognitio 99.7 1.2E-17 2.7E-22 107.3 7.8 68 9-76 1-70 (70)
53 TIGR01648 hnRNP-R-Q heterogene 99.7 6E-17 1.3E-21 141.4 12.2 127 5-136 232-369 (578)
54 PLN03121 nucleic acid binding 99.7 4.4E-16 9.5E-21 119.3 14.0 80 5-85 4-83 (243)
55 KOG0120 Splicing factor U2AF, 99.7 7.8E-17 1.7E-21 136.3 10.4 179 5-183 288-492 (500)
56 COG0724 RNA-binding proteins ( 99.7 1.1E-15 2.4E-20 125.1 14.6 140 6-145 115-262 (306)
57 KOG0122 Translation initiation 99.7 2.3E-16 5.1E-21 119.2 9.2 79 4-82 187-268 (270)
58 KOG0114 Predicted RNA-binding 99.7 3.6E-16 7.8E-21 102.4 8.8 78 5-82 17-94 (124)
59 KOG0124 Polypyrimidine tract-b 99.7 8.1E-15 1.8E-19 117.0 16.1 76 6-81 210-288 (544)
60 KOG0126 Predicted RNA-binding 99.7 1.4E-17 3E-22 120.2 0.4 81 5-85 34-117 (219)
61 PF14259 RRM_6: RNA recognitio 99.7 3.6E-16 7.8E-21 100.3 7.0 68 9-76 1-70 (70)
62 TIGR01659 sex-lethal sex-letha 99.6 2.7E-15 5.9E-20 124.6 12.2 81 5-85 192-277 (346)
63 KOG0113 U1 small nuclear ribon 99.6 1.3E-14 2.9E-19 112.8 14.9 69 106-174 99-171 (335)
64 KOG1190 Polypyrimidine tract-b 99.6 2.8E-15 6E-20 121.2 11.2 177 4-183 26-225 (492)
65 KOG0130 RNA-binding protein RB 99.6 1E-15 2.2E-20 105.2 6.5 77 8-84 74-153 (170)
66 KOG1456 Heterogeneous nuclear 99.6 4.8E-14 1E-18 112.9 16.4 179 4-184 285-485 (494)
67 KOG0125 Ataxin 2-binding prote 99.6 1.6E-15 3.5E-20 119.3 7.9 80 4-83 94-174 (376)
68 KOG0415 Predicted peptidyl pro 99.6 7.2E-16 1.6E-20 122.4 5.1 80 4-83 237-319 (479)
69 PLN03134 glycine-rich RNA-bind 99.6 3.9E-14 8.4E-19 103.3 13.8 79 106-188 32-114 (144)
70 smart00362 RRM_2 RNA recogniti 99.6 8.4E-15 1.8E-19 94.1 9.2 70 8-77 1-71 (72)
71 KOG0149 Predicted RNA-binding 99.6 2.3E-15 5E-20 113.4 7.2 75 7-82 13-90 (247)
72 PLN03213 repressor of silencin 99.6 5.7E-15 1.2E-19 122.2 9.7 77 4-81 8-86 (759)
73 KOG4212 RNA-binding protein hn 99.6 1.9E-13 4.1E-18 111.7 16.2 75 5-79 214-290 (608)
74 KOG0111 Cyclophilin-type pepti 99.6 4.2E-15 9.1E-20 110.7 5.5 84 4-87 8-94 (298)
75 PF13893 RRM_5: RNA recognitio 99.5 4.6E-14 1E-18 86.1 7.9 56 23-80 1-56 (56)
76 cd00590 RRM RRM (RNA recogniti 99.5 1E-13 2.2E-18 89.5 9.5 72 8-79 1-74 (74)
77 smart00360 RRM RNA recognition 99.5 6.6E-14 1.4E-18 89.5 8.2 67 11-77 1-70 (71)
78 PF00076 RRM_1: RNA recognitio 99.5 1.2E-13 2.5E-18 88.5 8.6 65 111-175 1-68 (70)
79 KOG0108 mRNA cleavage and poly 99.5 1.5E-13 3.2E-18 115.9 9.2 78 7-84 19-99 (435)
80 KOG1456 Heterogeneous nuclear 99.5 8.8E-12 1.9E-16 100.1 18.6 169 4-175 118-354 (494)
81 KOG0117 Heterogeneous nuclear 99.5 1.7E-13 3.8E-18 112.1 7.6 77 6-87 259-335 (506)
82 KOG0109 RNA-binding protein LA 99.4 1.7E-13 3.7E-18 106.3 5.5 74 4-82 76-149 (346)
83 PLN03120 nucleic acid binding 99.4 2.1E-12 4.5E-17 100.9 10.3 73 108-185 4-77 (260)
84 smart00361 RRM_1 RNA recogniti 99.4 1.8E-12 3.8E-17 82.8 7.5 58 20-77 2-69 (70)
85 KOG1365 RNA-binding protein Fu 99.4 2E-12 4.3E-17 104.1 9.4 172 7-183 162-357 (508)
86 KOG0129 Predicted RNA-binding 99.4 1.7E-11 3.8E-16 102.5 15.2 166 5-173 258-444 (520)
87 KOG0130 RNA-binding protein RB 99.4 2.1E-12 4.5E-17 89.1 8.0 77 106-186 70-150 (170)
88 KOG0105 Alternative splicing f 99.4 3.5E-12 7.6E-17 92.8 9.5 79 107-189 5-84 (241)
89 KOG0132 RNA polymerase II C-te 99.4 1.6E-12 3.5E-17 113.2 8.6 77 5-84 420-496 (894)
90 KOG0121 Nuclear cap-binding pr 99.3 3.7E-12 8E-17 87.1 7.1 77 107-187 35-115 (153)
91 PF14259 RRM_6: RNA recognitio 99.3 3.8E-12 8.1E-17 81.5 6.9 65 111-175 1-68 (70)
92 KOG4454 RNA binding protein (R 99.3 2.3E-13 5.1E-18 101.4 1.3 139 5-172 8-151 (267)
93 KOG0112 Large RNA-binding prot 99.3 9.1E-13 2E-17 116.4 4.6 151 4-177 370-522 (975)
94 KOG0125 Ataxin 2-binding prote 99.3 1.5E-11 3.2E-16 97.3 10.0 69 107-175 95-165 (376)
95 KOG0114 Predicted RNA-binding 99.3 1.7E-11 3.6E-16 80.7 8.5 73 107-183 17-90 (124)
96 KOG0122 Translation initiation 99.3 2.8E-11 6E-16 92.0 10.8 81 104-188 185-269 (270)
97 PLN03121 nucleic acid binding 99.3 1.9E-11 4.2E-16 94.0 9.8 68 107-175 4-72 (243)
98 KOG0415 Predicted peptidyl pro 99.3 1.1E-11 2.5E-16 98.9 8.0 75 105-183 236-314 (479)
99 PLN03213 repressor of silencin 99.3 1.8E-11 3.9E-16 101.8 9.3 74 107-184 9-84 (759)
100 smart00362 RRM_2 RNA recogniti 99.3 5.2E-11 1.1E-15 76.1 9.2 65 110-174 1-67 (72)
101 KOG0153 Predicted RNA-binding 99.3 2.2E-11 4.8E-16 97.0 8.7 78 2-82 224-302 (377)
102 KOG0120 Splicing factor U2AF, 99.2 5.3E-11 1.1E-15 101.3 10.0 168 4-175 173-360 (500)
103 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.6E-16 95.1 5.6 82 3-84 282-366 (371)
104 KOG4208 Nucleolar RNA-binding 99.2 3.9E-11 8.5E-16 89.1 8.0 79 5-83 48-130 (214)
105 KOG0149 Predicted RNA-binding 99.2 1.1E-10 2.4E-15 88.5 7.6 73 107-180 11-87 (247)
106 smart00360 RRM RNA recognition 99.2 3E-10 6.5E-15 72.3 8.6 62 113-174 1-66 (71)
107 cd00590 RRM RRM (RNA recogniti 99.1 8E-10 1.7E-14 70.9 9.4 65 110-174 1-68 (74)
108 KOG0131 Splicing factor 3b, su 99.1 1.5E-10 3.3E-15 84.2 6.4 80 5-84 95-178 (203)
109 KOG0533 RRM motif-containing p 99.1 4.4E-10 9.4E-15 87.7 8.6 79 6-84 83-163 (243)
110 KOG4211 Splicing factor hnRNP- 99.1 2.3E-09 5E-14 89.5 13.1 166 5-173 102-347 (510)
111 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.2E-09 2.6E-14 92.6 9.5 80 6-85 405-487 (940)
112 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.6E-14 66.4 7.0 50 125-175 1-50 (56)
113 KOG2193 IGF-II mRNA-binding pr 99.0 7.2E-11 1.6E-15 96.4 1.7 143 7-175 2-148 (584)
114 KOG0126 Predicted RNA-binding 99.0 3.5E-11 7.5E-16 87.4 -0.9 74 107-184 34-111 (219)
115 KOG0111 Cyclophilin-type pepti 99.0 4.5E-10 9.8E-15 84.2 4.7 78 107-188 9-90 (298)
116 KOG4660 Protein Mei2, essentia 99.0 3.2E-10 6.9E-15 95.9 4.4 165 3-173 72-239 (549)
117 KOG0128 RNA-binding protein SA 99.0 3.4E-11 7.3E-16 106.2 -1.8 134 4-173 665-804 (881)
118 KOG0151 Predicted splicing reg 99.0 1.8E-09 4E-14 93.6 8.1 78 5-82 173-256 (877)
119 KOG4209 Splicing factor RNPS1, 98.9 1.5E-09 3.2E-14 85.0 5.6 79 4-83 99-180 (231)
120 KOG0108 mRNA cleavage and poly 98.9 3.2E-09 6.9E-14 90.0 7.5 78 109-190 19-100 (435)
121 KOG4205 RNA-binding protein mu 98.9 1.9E-09 4.1E-14 87.6 5.7 82 5-87 96-180 (311)
122 smart00361 RRM_1 RNA recogniti 98.9 9.8E-09 2.1E-13 65.4 7.2 54 122-175 2-66 (70)
123 COG0724 RNA-binding proteins ( 98.9 1.1E-08 2.4E-13 83.5 9.5 74 108-185 115-192 (306)
124 PF04059 RRM_2: RNA recognitio 98.9 2.1E-08 4.5E-13 67.1 8.6 75 7-81 2-85 (97)
125 KOG0116 RasGAP SH3 binding pro 98.9 5.1E-09 1.1E-13 88.3 7.0 75 6-81 288-365 (419)
126 KOG4210 Nuclear localization s 98.9 5.8E-09 1.2E-13 84.4 7.1 169 5-188 87-264 (285)
127 PF11608 Limkain-b1: Limkain b 98.8 4.3E-08 9.3E-13 62.4 7.7 71 7-84 3-78 (90)
128 KOG1365 RNA-binding protein Fu 98.8 1.7E-07 3.7E-12 76.1 11.9 159 4-166 58-226 (508)
129 KOG4676 Splicing factor, argin 98.7 4E-09 8.6E-14 85.6 1.1 63 7-71 152-214 (479)
130 KOG4307 RNA binding protein RB 98.7 9.5E-08 2.1E-12 83.1 8.9 173 5-183 310-509 (944)
131 KOG0226 RNA-binding proteins [ 98.6 7.8E-08 1.7E-12 73.9 6.5 154 9-175 99-261 (290)
132 KOG4661 Hsp27-ERE-TATA-binding 98.6 2.6E-07 5.6E-12 78.8 9.5 73 107-183 404-480 (940)
133 KOG1457 RNA binding protein (c 98.6 5.3E-08 1.1E-12 73.4 4.1 66 4-70 208-273 (284)
134 KOG2202 U2 snRNP splicing fact 98.6 2.5E-07 5.5E-12 71.5 7.8 62 21-82 83-147 (260)
135 KOG0153 Predicted RNA-binding 98.6 2.9E-07 6.2E-12 74.0 8.1 79 103-187 223-302 (377)
136 KOG0106 Alternative splicing f 98.6 1.2E-07 2.5E-12 72.6 5.2 70 109-186 2-71 (216)
137 PF08777 RRM_3: RNA binding mo 98.5 2.7E-07 5.9E-12 63.3 5.9 70 7-79 2-76 (105)
138 KOG0226 RNA-binding proteins [ 98.5 1.5E-07 3.3E-12 72.4 4.6 75 5-79 189-266 (290)
139 KOG0533 RRM motif-containing p 98.5 6.1E-07 1.3E-11 70.3 7.9 70 107-176 82-154 (243)
140 KOG4206 Spliceosomal protein s 98.5 7.9E-07 1.7E-11 67.5 8.2 67 109-175 10-81 (221)
141 KOG0116 RasGAP SH3 binding pro 98.5 2.2E-06 4.8E-11 72.6 11.6 76 108-188 288-367 (419)
142 KOG0132 RNA polymerase II C-te 98.5 5.5E-07 1.2E-11 79.5 8.0 78 107-190 420-497 (894)
143 KOG4208 Nucleolar RNA-binding 98.5 8.7E-07 1.9E-11 66.3 7.6 79 103-181 44-127 (214)
144 KOG1995 Conserved Zn-finger pr 98.4 3.5E-07 7.6E-12 74.0 4.5 80 5-84 65-155 (351)
145 KOG1548 Transcription elongati 98.3 4E-06 8.6E-11 67.5 9.4 79 4-83 263-352 (382)
146 PF14605 Nup35_RRM_2: Nup53/35 98.3 2.3E-06 4.9E-11 50.9 5.5 53 6-62 1-53 (53)
147 KOG0151 Predicted splicing reg 98.3 2.8E-06 6E-11 74.5 8.1 73 101-173 167-246 (877)
148 KOG4454 RNA binding protein (R 98.3 5.3E-07 1.1E-11 68.0 2.6 70 106-175 7-78 (267)
149 KOG4660 Protein Mei2, essentia 98.2 2.3E-06 4.9E-11 73.1 4.9 69 106-175 73-141 (549)
150 COG5175 MOT2 Transcriptional r 98.2 5.8E-06 1.3E-10 66.4 6.9 76 6-81 114-201 (480)
151 PF05172 Nup35_RRM: Nup53/35/4 98.2 1.1E-05 2.4E-10 54.4 7.3 74 5-80 5-89 (100)
152 PF08777 RRM_3: RNA binding mo 98.2 3.6E-06 7.8E-11 57.8 4.9 59 109-169 2-60 (105)
153 KOG3152 TBP-binding protein, a 98.1 1.4E-06 3E-11 67.3 2.6 70 5-74 73-157 (278)
154 PF04059 RRM_2: RNA recognitio 98.1 4.4E-05 9.6E-10 51.2 8.6 65 109-173 2-72 (97)
155 KOG1855 Predicted RNA-binding 98.0 7.6E-06 1.6E-10 67.8 4.9 74 4-77 229-318 (484)
156 KOG4307 RNA binding protein RB 98.0 3.3E-05 7.1E-10 67.8 8.8 76 4-79 864-943 (944)
157 KOG4849 mRNA cleavage factor I 98.0 7.4E-06 1.6E-10 66.0 3.9 75 7-81 81-160 (498)
158 KOG2314 Translation initiation 98.0 2.1E-05 4.6E-10 67.4 6.7 77 5-81 57-142 (698)
159 KOG2416 Acinus (induces apopto 98.0 6.2E-06 1.4E-10 70.9 3.6 75 4-81 442-520 (718)
160 KOG4209 Splicing factor RNPS1, 98.0 6.4E-05 1.4E-09 59.1 8.9 70 106-176 99-172 (231)
161 PF11608 Limkain-b1: Limkain b 98.0 7.9E-05 1.7E-09 47.7 7.6 68 109-186 3-75 (90)
162 PF08952 DUF1866: Domain of un 97.9 7.4E-05 1.6E-09 53.5 7.8 73 4-82 25-106 (146)
163 KOG4210 Nuclear localization s 97.9 8.3E-06 1.8E-10 66.3 3.3 79 4-83 182-264 (285)
164 KOG0115 RNA-binding protein p5 97.9 4E-05 8.6E-10 59.5 6.6 101 57-183 6-109 (275)
165 KOG0129 Predicted RNA-binding 97.9 6.6E-05 1.4E-09 63.9 8.0 60 4-63 368-431 (520)
166 KOG1996 mRNA splicing factor [ 97.7 8.7E-05 1.9E-09 58.6 6.3 77 5-81 280-365 (378)
167 KOG0112 Large RNA-binding prot 97.7 7.9E-05 1.7E-09 67.4 5.6 81 3-86 452-534 (975)
168 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3.1E-09 43.1 4.9 52 109-163 2-53 (53)
169 KOG2202 U2 snRNP splicing fact 97.7 0.00011 2.4E-09 57.1 5.6 56 123-178 83-142 (260)
170 KOG3152 TBP-binding protein, a 97.5 6.5E-05 1.4E-09 58.3 2.6 68 108-175 74-157 (278)
171 KOG0128 RNA-binding protein SA 97.4 0.00019 4.2E-09 64.6 4.6 79 6-84 736-816 (881)
172 PF08675 RNA_bind: RNA binding 97.4 0.0011 2.3E-08 42.6 6.7 54 7-66 10-63 (87)
173 PF15023 DUF4523: Protein of u 97.4 0.0018 4E-08 45.9 8.1 73 4-81 84-160 (166)
174 PF07576 BRAP2: BRCA1-associat 97.3 0.0025 5.5E-08 43.9 8.1 68 4-71 11-80 (110)
175 COG5175 MOT2 Transcriptional r 97.3 0.0011 2.4E-08 53.6 6.9 75 103-177 109-196 (480)
176 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0012 2.5E-08 44.7 6.0 66 107-174 5-81 (100)
177 KOG0804 Cytoplasmic Zn-finger 97.1 0.0033 7.2E-08 53.0 8.5 67 5-71 73-141 (493)
178 KOG2314 Translation initiation 97.1 0.0022 4.8E-08 55.5 7.1 67 108-174 58-133 (698)
179 KOG1995 Conserved Zn-finger pr 97.1 0.00068 1.5E-08 55.4 3.9 69 106-174 64-144 (351)
180 KOG1996 mRNA splicing factor [ 97.0 0.0026 5.7E-08 50.5 6.7 56 122-177 300-360 (378)
181 PF03880 DbpA: DbpA RNA bindin 97.0 0.0057 1.2E-07 39.1 7.1 66 8-80 2-74 (74)
182 PF04847 Calcipressin: Calcipr 96.9 0.0043 9.3E-08 47.1 7.0 64 18-84 7-72 (184)
183 PF10309 DUF2414: Protein of u 96.8 0.012 2.7E-07 35.8 7.1 54 6-65 5-62 (62)
184 KOG2135 Proteins containing th 96.8 0.00076 1.6E-08 57.0 2.4 75 4-82 370-445 (526)
185 KOG1855 Predicted RNA-binding 96.8 0.0019 4.1E-08 54.0 4.6 65 104-168 227-308 (484)
186 PF08675 RNA_bind: RNA binding 96.8 0.0052 1.1E-07 39.5 5.5 56 108-168 9-64 (87)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0015 3.3E-08 49.4 3.3 80 5-84 6-99 (176)
188 KOG2416 Acinus (induces apopto 96.7 0.0019 4.1E-08 56.2 4.1 65 106-172 442-507 (718)
189 KOG2253 U1 snRNP complex, subu 96.7 0.001 2.3E-08 58.5 2.5 70 5-80 39-108 (668)
190 KOG2591 c-Mpl binding protein, 96.7 0.0022 4.8E-08 55.3 4.3 72 4-79 173-248 (684)
191 KOG4285 Mitotic phosphoprotein 96.6 0.0082 1.8E-07 48.0 6.7 69 7-80 198-267 (350)
192 PF10309 DUF2414: Protein of u 96.6 0.025 5.5E-07 34.4 7.2 54 109-166 6-62 (62)
193 PF08952 DUF1866: Domain of un 96.4 0.019 4.1E-07 41.4 6.7 51 123-178 51-101 (146)
194 KOG0835 Cyclin L [General func 96.2 0.0089 1.9E-07 48.5 4.8 24 43-67 171-194 (367)
195 KOG2068 MOT2 transcription fac 96.2 0.0019 4.1E-08 52.5 1.1 75 7-81 78-161 (327)
196 KOG2888 Putative RNA binding p 96.2 0.0025 5.4E-08 51.5 1.6 12 122-133 226-237 (453)
197 KOG0115 RNA-binding protein p5 96.0 0.008 1.7E-07 47.0 3.7 75 7-81 32-112 (275)
198 PF11767 SET_assoc: Histone ly 95.9 0.049 1.1E-06 33.7 6.1 55 17-77 11-65 (66)
199 KOG2135 Proteins containing th 95.8 0.0082 1.8E-07 51.0 3.1 72 109-187 373-445 (526)
200 PF10567 Nab6_mRNP_bdg: RNA-re 95.5 0.47 1E-05 38.3 11.7 162 6-168 15-213 (309)
201 PF07576 BRAP2: BRCA1-associat 95.4 0.3 6.5E-06 33.8 9.0 65 109-173 14-81 (110)
202 KOG2318 Uncharacterized conser 95.2 0.095 2.1E-06 45.9 7.5 79 3-81 171-306 (650)
203 KOG2591 c-Mpl binding protein, 95.2 0.087 1.9E-06 46.0 7.2 85 55-167 147-233 (684)
204 KOG4849 mRNA cleavage factor I 94.9 0.032 6.9E-07 45.7 3.6 68 107-174 79-152 (498)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.048 1E-06 41.2 4.2 70 107-176 6-85 (176)
206 KOG4574 RNA-binding protein (c 94.4 0.03 6.6E-07 51.1 2.7 69 13-84 305-375 (1007)
207 PF07292 NID: Nmi/IFP 35 domai 94.3 0.068 1.5E-06 35.1 3.5 72 48-129 1-73 (88)
208 KOG2193 IGF-II mRNA-binding pr 94.3 0.0016 3.4E-08 54.4 -5.1 78 5-82 79-156 (584)
209 KOG0835 Cyclin L [General func 93.9 0.13 2.7E-06 42.1 5.0 12 119-130 212-223 (367)
210 KOG4019 Calcineurin-mediated s 93.9 0.41 8.9E-06 35.7 7.2 78 5-85 9-92 (193)
211 KOG0804 Cytoplasmic Zn-finger 93.9 0.33 7.1E-06 41.5 7.5 66 108-173 74-142 (493)
212 KOG4285 Mitotic phosphoprotein 93.6 0.53 1.1E-05 38.1 7.8 71 108-185 197-267 (350)
213 PF14111 DUF4283: Domain of un 93.4 0.09 1.9E-06 38.7 3.3 120 9-144 18-141 (153)
214 KOG2068 MOT2 transcription fac 92.8 0.072 1.6E-06 43.6 2.1 69 107-175 76-154 (327)
215 PF15023 DUF4523: Protein of u 91.9 0.79 1.7E-05 32.9 6.1 61 107-170 85-149 (166)
216 KOG2253 U1 snRNP complex, subu 89.0 0.65 1.4E-05 41.7 4.4 65 105-174 37-101 (668)
217 PF04847 Calcipressin: Calcipr 88.8 2 4.3E-05 32.8 6.4 55 121-177 8-64 (184)
218 KOG4574 RNA-binding protein (c 87.1 0.36 7.7E-06 44.5 1.7 58 113-172 303-360 (1007)
219 KOG3580 Tight junction protein 85.7 5.1 0.00011 36.0 7.9 43 101-143 54-97 (1027)
220 PF03468 XS: XS domain; Inter 85.4 0.76 1.6E-05 32.1 2.3 56 8-63 10-75 (116)
221 PF15513 DUF4651: Domain of un 83.4 3.1 6.6E-05 25.3 4.0 19 21-39 9-27 (62)
222 KOG4483 Uncharacterized conser 82.6 3.1 6.7E-05 35.2 5.0 56 6-64 391-446 (528)
223 PRK14548 50S ribosomal protein 81.5 8.5 0.00018 25.1 5.9 57 9-65 23-81 (84)
224 KOG1295 Nonsense-mediated deca 80.9 1.6 3.4E-05 36.7 2.9 66 5-70 6-77 (376)
225 COG5638 Uncharacterized conser 79.9 8.3 0.00018 32.9 6.7 80 2-81 142-296 (622)
226 PRK14548 50S ribosomal protein 79.6 13 0.00027 24.3 6.2 57 110-166 22-81 (84)
227 TIGR03636 L23_arch archaeal ri 79.5 13 0.00029 23.8 6.2 57 110-166 15-74 (77)
228 PF02714 DUF221: Domain of unk 79.1 4.6 9.9E-05 33.8 5.2 56 48-130 1-56 (325)
229 PF03880 DbpA: DbpA RNA bindin 78.0 11 0.00024 23.8 5.6 53 118-175 11-68 (74)
230 KOG4410 5-formyltetrahydrofola 77.2 4.1 9E-05 32.8 4.0 48 6-55 330-377 (396)
231 KOG2295 C2H2 Zn-finger protein 76.0 0.33 7.2E-06 42.5 -2.4 68 5-72 230-300 (648)
232 PF09707 Cas_Cas2CT1978: CRISP 75.8 7.5 0.00016 25.5 4.3 49 5-53 24-72 (86)
233 KOG4246 Predicted DNA-binding 75.4 1.2 2.6E-05 41.2 0.7 10 108-117 145-154 (1194)
234 PF14893 PNMA: PNMA 70.5 6.2 0.00013 33.1 3.7 76 3-81 15-95 (331)
235 KOG4008 rRNA processing protei 70.2 4.5 9.7E-05 31.8 2.6 35 4-38 38-72 (261)
236 KOG2891 Surface glycoprotein [ 65.8 11 0.00024 30.3 4.1 66 5-70 148-247 (445)
237 KOG4365 Uncharacterized conser 65.7 1.1 2.3E-05 38.4 -1.6 75 6-81 3-80 (572)
238 PF07292 NID: Nmi/IFP 35 domai 65.5 3.4 7.4E-05 27.2 1.1 25 4-28 50-74 (88)
239 PRK11558 putative ssRNA endonu 64.8 15 0.00032 24.8 3.9 50 6-55 27-76 (97)
240 KOG4483 Uncharacterized conser 63.4 23 0.0005 30.3 5.6 55 108-165 391-446 (528)
241 KOG4410 5-formyltetrahydrofola 62.6 70 0.0015 26.1 7.9 54 103-157 325-378 (396)
242 TIGR03636 L23_arch archaeal ri 62.6 36 0.00078 21.8 5.3 58 8-65 15-74 (77)
243 KOG2812 Uncharacterized conser 60.7 13 0.00027 31.2 3.7 6 255-260 88-93 (426)
244 PF11767 SET_assoc: Histone ly 60.2 39 0.00084 20.9 5.3 50 119-173 11-60 (66)
245 PF11823 DUF3343: Protein of u 60.0 13 0.00028 23.4 3.0 29 46-74 2-30 (73)
246 KOG2318 Uncharacterized conser 59.4 76 0.0016 28.8 8.3 68 107-174 173-296 (650)
247 KOG4213 RNA-binding protein La 59.1 15 0.00033 27.6 3.5 46 18-63 118-168 (205)
248 KOG4246 Predicted DNA-binding 58.4 5 0.00011 37.4 1.1 6 47-52 61-66 (1194)
249 PTZ00191 60S ribosomal protein 57.4 55 0.0012 23.9 6.0 57 109-165 82-141 (145)
250 PF07530 PRE_C2HC: Associated 56.4 46 0.001 20.7 5.0 59 21-82 2-64 (68)
251 TIGR01873 cas_CT1978 CRISPR-as 52.6 33 0.00072 22.6 3.9 50 5-54 24-74 (87)
252 PF10567 Nab6_mRNP_bdg: RNA-re 52.4 35 0.00077 27.9 4.9 55 108-162 15-80 (309)
253 KOG1295 Nonsense-mediated deca 50.5 21 0.00044 30.4 3.4 65 109-173 8-79 (376)
254 PF08544 GHMP_kinases_C: GHMP 50.4 63 0.0014 20.4 6.1 45 122-167 36-80 (85)
255 PF03439 Spt5-NGN: Early trans 50.1 45 0.00097 21.7 4.4 35 32-68 33-67 (84)
256 cd04889 ACT_PDH-BS-like C-term 49.4 50 0.0011 19.0 5.8 42 21-62 13-55 (56)
257 KOG4019 Calcineurin-mediated s 49.0 15 0.00032 27.8 2.1 64 109-174 11-79 (193)
258 PF11411 DNA_ligase_IV: DNA li 48.4 15 0.00032 19.6 1.5 17 16-32 19-35 (36)
259 COG0150 PurM Phosphoribosylami 48.1 5.8 0.00013 33.1 -0.1 48 20-68 275-322 (345)
260 smart00596 PRE_C2HC PRE_C2HC d 48.1 62 0.0014 20.2 4.4 58 21-81 2-63 (69)
261 PF15063 TC1: Thyroid cancer p 48.1 13 0.00029 23.5 1.5 25 10-34 29-53 (79)
262 PF08734 GYD: GYD domain; Int 47.1 82 0.0018 20.8 5.9 45 122-166 22-67 (91)
263 PTZ00191 60S ribosomal protein 46.6 77 0.0017 23.1 5.4 55 9-63 84-140 (145)
264 KOG2146 Splicing coactivator S 45.3 78 0.0017 25.9 5.7 30 49-78 56-86 (354)
265 KOG2187 tRNA uracil-5-methyltr 44.7 16 0.00035 32.5 2.0 41 44-84 62-102 (534)
266 PF09902 DUF2129: Uncharacteri 44.5 67 0.0015 20.2 4.3 37 27-69 17-53 (71)
267 PRK08559 nusG transcription an 44.4 1.1E+02 0.0025 22.4 6.3 33 33-67 36-68 (153)
268 CHL00123 rps6 ribosomal protei 44.1 90 0.002 20.9 5.2 54 8-63 10-80 (97)
269 KOG2146 Splicing coactivator S 42.0 1.5E+02 0.0032 24.3 6.8 7 54-60 46-52 (354)
270 PF03439 Spt5-NGN: Early trans 41.2 57 0.0012 21.2 3.8 32 140-171 38-69 (84)
271 COG0030 KsgA Dimethyladenosine 40.6 44 0.00094 27.1 3.8 45 7-64 96-140 (259)
272 COG5227 SMT3 Ubiquitin-like pr 40.3 1.1E+02 0.0024 20.2 5.1 65 2-67 30-100 (103)
273 PRK09631 DNA topoisomerase IV 39.9 2.9E+02 0.0064 25.8 9.2 57 6-63 220-280 (635)
274 PF02829 3H: 3H domain; Inter 39.7 68 0.0015 21.7 4.0 52 16-67 7-58 (98)
275 PF01071 GARS_A: Phosphoribosy 39.6 1.4E+02 0.0029 23.1 6.2 46 19-65 25-70 (194)
276 TIGR02542 B_forsyth_147 Bacter 39.2 1.3E+02 0.0029 20.9 7.0 103 12-156 9-129 (145)
277 PF08544 GHMP_kinases_C: GHMP 38.1 1E+02 0.0023 19.4 6.0 43 21-65 37-79 (85)
278 KOG4008 rRNA processing protei 37.3 23 0.00051 27.9 1.7 32 109-140 41-72 (261)
279 PRK10629 EnvZ/OmpR regulon mod 37.1 1.5E+02 0.0033 21.1 8.2 71 5-80 34-108 (127)
280 PRK11634 ATP-dependent RNA hel 36.4 1.2E+02 0.0027 28.2 6.6 72 9-82 489-562 (629)
281 KOG0156 Cytochrome P450 CYP2 s 36.3 84 0.0018 28.2 5.3 59 10-75 36-97 (489)
282 PF05189 RTC_insert: RNA 3'-te 36.1 78 0.0017 21.3 4.1 46 8-53 12-65 (103)
283 PRK11901 hypothetical protein; 35.9 1.5E+02 0.0033 24.8 6.2 60 108-171 245-309 (327)
284 COG0018 ArgS Arginyl-tRNA synt 34.5 3.3E+02 0.0071 25.2 8.7 98 19-143 59-165 (577)
285 PF12091 DUF3567: Protein of u 33.9 52 0.0011 21.4 2.6 17 118-134 60-76 (85)
286 PF13820 Nucleic_acid_bd: Puta 31.7 1.1E+02 0.0024 22.5 4.4 58 8-66 6-66 (149)
287 cd00187 TOP4c DNA Topoisomeras 31.4 2.8E+02 0.0062 24.6 7.6 23 7-29 226-248 (445)
288 PF00403 HMA: Heavy-metal-asso 31.4 1.1E+02 0.0025 17.9 6.4 54 8-64 1-58 (62)
289 PF12829 Mhr1: Transcriptional 31.3 1.1E+02 0.0024 20.3 3.9 55 11-66 17-72 (91)
290 cd00027 BRCT Breast Cancer Sup 31.1 82 0.0018 18.4 3.3 27 7-33 2-28 (72)
291 TIGR00405 L26e_arch ribosomal 30.9 2.1E+02 0.0045 20.7 6.0 28 40-67 33-60 (145)
292 COG0002 ArgC Acetylglutamate s 30.5 1.6E+02 0.0034 25.1 5.5 48 8-56 248-304 (349)
293 PF13689 DUF4154: Domain of un 30.3 2.1E+02 0.0046 20.6 8.4 37 44-81 25-61 (145)
294 PF08442 ATP-grasp_2: ATP-gras 30.3 1.5E+02 0.0032 23.1 5.2 54 18-71 25-81 (202)
295 PF14111 DUF4283: Domain of un 29.6 64 0.0014 23.3 3.0 32 9-40 107-139 (153)
296 PF00398 RrnaAD: Ribosomal RNA 29.5 44 0.00096 27.0 2.3 23 6-28 97-119 (262)
297 PRK11230 glycolate oxidase sub 29.2 1.9E+02 0.0042 26.0 6.4 48 19-66 202-255 (499)
298 COG3254 Uncharacterized conser 29.2 1.9E+02 0.0041 19.8 5.6 43 21-63 27-69 (105)
299 KOG2295 C2H2 Zn-finger protein 28.9 11 0.00023 33.7 -1.5 67 107-173 230-300 (648)
300 COG5193 LHP1 La protein, small 28.6 30 0.00065 29.6 1.1 58 6-63 174-244 (438)
301 PF15407 Spo7_2_N: Sporulation 28.4 20 0.00043 22.3 0.1 25 4-28 25-49 (67)
302 PF08206 OB_RNB: Ribonuclease 28.3 14 0.00031 22.0 -0.6 38 43-81 6-44 (58)
303 KOG1049 Polyadenylation factor 28.0 49 0.0011 29.6 2.3 8 8-15 120-127 (538)
304 PHA01632 hypothetical protein 27.3 71 0.0015 18.8 2.2 21 9-29 19-39 (64)
305 PF09869 DUF2096: Uncharacteri 27.1 2.7E+02 0.0059 20.9 5.9 51 8-66 114-164 (169)
306 PRK02886 hypothetical protein; 27.1 1.7E+02 0.0038 19.2 4.2 37 27-69 21-57 (87)
307 PF05036 SPOR: Sporulation rel 27.0 25 0.00055 21.7 0.4 58 8-66 6-65 (76)
308 PRK08559 nusG transcription an 26.7 2.6E+02 0.0057 20.5 6.2 28 141-168 41-68 (153)
309 KOG3702 Nuclear polyadenylated 26.5 37 0.00081 31.1 1.4 69 8-77 513-584 (681)
310 COG5470 Uncharacterized conser 26.5 2E+02 0.0042 19.3 4.4 21 43-63 51-71 (96)
311 PRK02302 hypothetical protein; 26.2 1.8E+02 0.0038 19.3 4.2 37 27-69 23-59 (89)
312 PRK11901 hypothetical protein; 26.0 2E+02 0.0044 24.2 5.4 49 17-67 253-306 (327)
313 PF06014 DUF910: Bacterial pro 25.2 63 0.0014 19.7 1.8 18 19-36 3-20 (62)
314 COG0445 GidA Flavin-dependent 24.9 3E+02 0.0065 25.3 6.5 109 48-173 239-361 (621)
315 PF14893 PNMA: PNMA 24.9 58 0.0013 27.5 2.2 24 108-131 18-41 (331)
316 KOG2854 Possible pfkB family c 24.7 3.6E+02 0.0079 22.8 6.6 47 3-50 78-124 (343)
317 PF12993 DUF3877: Domain of un 24.7 1.5E+02 0.0033 22.3 4.0 21 117-137 106-126 (175)
318 PF08156 NOP5NT: NOP5NT (NUC12 24.5 22 0.00047 22.1 -0.3 38 21-65 27-64 (67)
319 KOG3424 40S ribosomal protein 24.1 2.3E+02 0.0051 19.8 4.5 43 16-59 33-83 (132)
320 PF14527 LAGLIDADG_WhiA: WhiA 24.0 2.2E+02 0.0049 18.8 5.4 73 23-136 5-78 (93)
321 cd04908 ACT_Bt0572_1 N-termina 23.9 1.7E+02 0.0037 17.5 7.9 44 121-164 14-58 (66)
322 PRK09630 DNA topoisomerase IV 23.3 5E+02 0.011 23.3 7.5 58 6-64 220-281 (479)
323 PF14026 DUF4242: Protein of u 23.3 2.1E+02 0.0045 18.2 8.0 60 9-69 3-70 (77)
324 PRK05192 tRNA uridine 5-carbox 23.2 2.6E+02 0.0057 26.1 6.1 41 103-143 296-336 (618)
325 PRK05192 tRNA uridine 5-carbox 22.9 1.1E+02 0.0025 28.3 3.8 38 3-40 298-335 (618)
326 TIGR00755 ksgA dimethyladenosi 22.7 98 0.0021 24.8 3.1 23 8-30 96-118 (253)
327 PHA03075 glutaredoxin-like pro 22.4 1.8E+02 0.004 20.3 3.8 30 23-52 59-88 (123)
328 KOG4066 Cell growth regulatory 22.2 1.8E+02 0.0039 21.6 3.9 63 3-77 71-133 (177)
329 PF01984 dsDNA_bind: Double-st 22.2 73 0.0016 21.9 1.9 22 12-33 75-96 (107)
330 PF02956 TT_ORF1: TT viral orf 22.1 1.1E+02 0.0025 27.7 3.6 54 199-252 6-59 (525)
331 PTZ00380 microtubule-associate 21.9 1.8E+02 0.0039 20.5 3.8 10 46-55 98-107 (121)
332 PF03389 MobA_MobL: MobA/MobL 21.7 1.7E+02 0.0037 23.0 4.2 46 10-55 71-124 (216)
333 KOG4840 Predicted hydrolases o 21.6 2.7E+02 0.0059 22.3 5.0 74 6-81 37-116 (299)
334 PF11910 NdhO: Cyanobacterial 21.4 68 0.0015 19.7 1.4 22 26-54 31-52 (67)
335 PTZ00338 dimethyladenosine tra 21.2 1.1E+02 0.0024 25.3 3.2 22 8-29 103-124 (294)
336 COG5507 Uncharacterized conser 21.0 91 0.002 20.9 2.0 20 46-65 67-86 (117)
337 KOG1888 Putative phosphoinosit 20.8 3E+02 0.0064 26.4 5.9 66 6-75 309-378 (868)
338 PF01037 AsnC_trans_reg: AsnC 20.8 2.1E+02 0.0045 17.3 6.4 45 121-165 11-55 (74)
339 PF02714 DUF221: Domain of unk 20.4 1.3E+02 0.0028 25.1 3.5 23 149-171 1-23 (325)
340 COG5594 Uncharacterized integr 20.2 1.1E+02 0.0024 29.1 3.2 32 43-74 355-386 (827)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.4e-33 Score=229.28 Aligned_cols=152 Identities=26% Similarity=0.424 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++|||+|||+++|+++|+++|+.||+|+.|+|+. ++.++|||||+|.++++|+.|+..|||..|.++.|+|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 678999999999999999999999999999999943 67889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (270)
+.. .....++|||.|||..+++++|+++|.+||.|..+.|+.+.. .++|||+|.+.+
T Consensus 186 p~~-------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 186 PGG-------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred ccc-------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 421 112346899999999999999999999999999999987753 369999999999
Q ss_pred HHHHHHHHcCCcccccce
Q 024221 158 DMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~ 175 (270)
+|++|++.||+..+.+..
T Consensus 247 ~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGS 264 (346)
T ss_pred HHHHHHHHhCCCccCCCc
Confidence 999999999999998743
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.1e-30 Score=183.18 Aligned_cols=186 Identities=62% Similarity=1.050 Sum_probs=158.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
|+++.+++|||+|||.++.+.+|.+||-+||.|.+|.|+....+.+||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC-------CCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEe
Q 024221 81 HGGRGRSSSDR-------HSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDY 153 (270)
Q Consensus 81 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f 153 (270)
........... ..........++...+...+.|.+||+..+|++|++++.+.|.|++..+..+. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 87663222111 00111112345677788999999999999999999999999999999998884 789999
Q ss_pred cCHHHHHHHHHHcCCcccccceeeeeeeeeccccCC
Q 024221 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 189 (270)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~~ 189 (270)
...++.+-|+.+|+...+...-.+.+|.+.......
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 999999999999999988875567888888776553
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=3.1e-30 Score=224.00 Aligned_cols=170 Identities=22% Similarity=0.345 Sum_probs=141.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++|||+|||+.+++++|+++|..||+|..|.|.. +++++|||||+|.+.++|..|+..|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999954 67899999999999999999999999999999999998543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 157 (270)
........ ............+|||+||++.+++++|+++|+.||.|..+.+..+. ..|||||+|.+.+
T Consensus 186 ~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 22110000 00001112234689999999999999999999999999999999874 4579999999999
Q ss_pred HHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 158 DMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
+|.+|+..||+..++| ..++|....
T Consensus 258 ~A~kAI~amNg~elgG----r~LrV~kAi 282 (612)
T TIGR01645 258 SQSEAIASMNLFDLGG----QYLRVGKCV 282 (612)
T ss_pred HHHHHHHHhCCCeeCC----eEEEEEecC
Confidence 9999999999999999 556665443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=6.2e-30 Score=216.09 Aligned_cols=160 Identities=23% Similarity=0.406 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+.+|+++|+++|+.||+|..|+|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999954 57889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~ 157 (270)
+... .....+|||+|||..+++++|.++|..||.|..+.+..+. ..+||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4221 1124589999999999999999999999999999988764 4569999999999
Q ss_pred HHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
+|+.|++.|||..+.|.. ..+.+...
T Consensus 143 ~A~~ai~~l~g~~~~g~~--~~i~v~~a 168 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCT--EPITVKFA 168 (352)
T ss_pred HHHHHHHHhCCCccCCCc--eeEEEEEC
Confidence 999999999999998743 34444443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.7e-29 Score=219.12 Aligned_cols=170 Identities=21% Similarity=0.314 Sum_probs=141.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
++.++|||+|||+.+++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5688999999999999999999999999999999954 57889999999999999999998 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~ 156 (270)
............ ......+...+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.
T Consensus 166 ~~~~~~~~~~~~-------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAAT-------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhccc-------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 543221110000 0001112367999999999999999999999999999999998754 36999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
++|..|+..|||..+.| ..|.|...
T Consensus 239 e~A~~A~~~l~g~~i~g----~~i~v~~a 263 (457)
T TIGR01622 239 EEAKEALEVMNGFELAG----RPIKVGYA 263 (457)
T ss_pred HHHHHHHHhcCCcEECC----EEEEEEEc
Confidence 99999999999999998 45555543
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.8e-30 Score=194.31 Aligned_cols=168 Identities=20% Similarity=0.331 Sum_probs=142.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
-|||+.|.+.++-++|++-|.+||+|.+++|+ .|++++||+||.|.+.++|+.||..|||.+|+++.|+..||..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 48999999999999999999999999999994 478999999999999999999999999999999999999997544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHH
Q 024221 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (270)
...... + ..-..-.....+..++||++|++..+++++|++.|+.||.|..|.+.++. +|+||.|++.|.|..|+.
T Consensus 144 ~e~n~~-~--ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 144 SEMNGK-P--LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIV 218 (321)
T ss_pred cccCCC-C--ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHH
Confidence 110000 0 00000122444577899999999999999999999999999999999885 599999999999999999
Q ss_pred HcCCcccccceeeeee
Q 024221 165 KLDDSEFRNAFSRAYV 180 (270)
Q Consensus 165 ~l~g~~~~g~~~~~~i 180 (270)
.+|+.+++|+.+++..
T Consensus 219 ~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSW 234 (321)
T ss_pred HhcCceeCceEEEEec
Confidence 9999999997655543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.5e-28 Score=207.64 Aligned_cols=179 Identities=25% Similarity=0.357 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~ 79 (270)
..++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 46789999999999999999999999999877 5788888
Q ss_pred ccCCCCCCC--------------CCC-CCC-----------C--------------------------------CCCCC-
Q 024221 80 AHGGRGRSS--------------SDR-HSS-----------H--------------------------------SSGRG- 100 (270)
Q Consensus 80 ~~~~~~~~~--------------~~~-~~~-----------~--------------------------------~~~~~- 100 (270)
+........ ... ... . .....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 764331000 000 000 0 00000
Q ss_pred --------------CCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHH
Q 024221 101 --------------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (270)
Q Consensus 101 --------------~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a 162 (270)
.......+.+|||+|||+.+++++|.++|++||.|..+.++.+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00001223369999999999999999999999999999999875 467999999999999999
Q ss_pred HHHcCCcccccceeeeeeeeecccc
Q 024221 163 IKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 163 ~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
+..|||..++| +.|.|.....
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~ 348 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTN 348 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccC
Confidence 99999999999 5666665443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.4e-28 Score=214.33 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=135.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHh--cCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~i~v~~~~~ 82 (270)
|+++|||+|||+.+++++|.++|+.||+|..|.|+ ..++||||+|.+.++|+.|+.. +|+..|.|+.|.|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~---~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML---PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE---CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 68999999999999999999999999999999987 3578999999999999999986 478999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHH
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a 162 (270)
......... . ...........|+|.||++.+++++|.++|+.||.|..|.++.+...++|||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~------~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGNS------D-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCCC------c-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 432211100 0 000111234579999999999999999999999999999998877667999999999999999
Q ss_pred HHHcCCcccccc
Q 024221 163 IKKLDDSEFRNA 174 (270)
Q Consensus 163 ~~~l~g~~~~g~ 174 (270)
++.|||..+.+.
T Consensus 151 ~~~Lng~~i~~~ 162 (481)
T TIGR01649 151 KAALNGADIYNG 162 (481)
T ss_pred HHHhcCCcccCC
Confidence 999999999764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3e-28 Score=217.25 Aligned_cols=150 Identities=26% Similarity=0.435 Sum_probs=133.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
+|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999954 57789999999999999999999999999999999999975321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHH
Q 024221 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKH 161 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~ 161 (270)
.. ......+|||+||+.++++++|.++|+.||.|..|.+..+. ..+||||+|.+.++|..
T Consensus 82 ~~-----------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SL-----------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred cc-----------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 10 11123479999999999999999999999999999998774 45799999999999999
Q ss_pred HHHHcCCcccccc
Q 024221 162 AIKKLDDSEFRNA 174 (270)
Q Consensus 162 a~~~l~g~~~~g~ 174 (270)
|++++||..+.|.
T Consensus 145 Ai~~lng~~~~~~ 157 (562)
T TIGR01628 145 AIQKVNGMLLNDK 157 (562)
T ss_pred HHHHhcccEecCc
Confidence 9999999999984
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.1e-27 Score=208.81 Aligned_cols=170 Identities=18% Similarity=0.278 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.++++|||+||++ .+|+++|.++|+.||.|..|+|+.+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3678999999998 6999999999999999999999754 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC--------CCCCCC--C--------CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCC--ceEEEEEe
Q 024221 83 GRGRSSSDRH--------SSHSSG--R--------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (270)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~--~--------~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~--i~~~~~~~ 142 (270)
.......... ...... . .......+..+|||.|||..+++++|+++|+.||. |..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 4322111100 000000 0 00011235678999999999999999999999998 77787765
Q ss_pred cC--CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 143 ~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.. ..++|||+|.+.++|.+|+..||+..+.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 43 2469999999999999999999999999864
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.5e-27 Score=205.70 Aligned_cols=174 Identities=22% Similarity=0.339 Sum_probs=135.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~~~~ 82 (270)
.++|||+|||+++++++|+++|++||+|.+|+|+. ++.++|||||+|.+.++|++||..||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999965 5789999999999999999999999998885 77776654431
Q ss_pred CCC------CCC------------------------CCCCCCCC-----------------------CC-----------
Q 024221 83 GRG------RSS------------------------SDRHSSHS-----------------------SG----------- 98 (270)
Q Consensus 83 ~~~------~~~------------------------~~~~~~~~-----------------------~~----------- 98 (270)
... +.. ........ ..
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 000 00000000 00
Q ss_pred -C--CC---CCCCCcccEEEecCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcc
Q 024221 99 -R--GR---GVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (270)
Q Consensus 99 -~--~~---~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (270)
. .. ........+|||+||+..+++++|+++|++| |.|+.|.++.+ ||||+|++.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 00 0011234679999999999999999999999 99999988765 99999999999999999999999
Q ss_pred cccceeeeeeeeecccc
Q 024221 171 FRNAFSRAYVRVREYDH 187 (270)
Q Consensus 171 ~~g~~~~~~i~~~~~~~ 187 (270)
|.| ..|.|.+.++
T Consensus 294 i~G----r~I~V~~Akp 306 (578)
T TIGR01648 294 LEG----SEIEVTLAKP 306 (578)
T ss_pred ECC----EEEEEEEccC
Confidence 999 6666665544
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.2e-27 Score=208.05 Aligned_cols=169 Identities=20% Similarity=0.303 Sum_probs=130.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
+...++|||+|||+.+|+++|.++|..| +.|..+.+ +..+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 34444444 3568999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCC------CCCCC----CCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEE
Q 024221 71 DGHRLRVELAHGGRGRSSSDRHS------SHSSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (270)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~ 140 (270)
.|..|.|.........+...... ..... ...........+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997554332111100000 00000 001112234579999999999999999999999999999999
Q ss_pred EecC----CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 141 ~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+.+. ..|||||+|.+.++|..|+..|||..+.|..
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 8764 4579999999999999999999999999943
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=193.76 Aligned_cols=172 Identities=24% Similarity=0.348 Sum_probs=137.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~~~ 81 (270)
.|-||||.||.++.|++|.-||++.|+|-++.|++ +|.++|||||+|.+.+.|+.|+..||+..|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 47899999999999999999999999999999955 5899999999999999999999999999984 9999887655
Q ss_pred CCCC-------CCC-----------------------CCCCCCCCCC---------------------------------
Q 024221 82 GGRG-------RSS-----------------------SDRHSSHSSG--------------------------------- 98 (270)
Q Consensus 82 ~~~~-------~~~-----------------------~~~~~~~~~~--------------------------------- 98 (270)
.... ... .......+.+
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 1110 000 0000000000
Q ss_pred -------CCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccc
Q 024221 99 -------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 99 -------~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
.........-..|||.||+.++|++.|+++|++||.|+.|..+.| ||||.|.+.++|.+||+.+||++|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000112224468999999999999999999999999999999988 999999999999999999999999
Q ss_pred ccceeeeeee
Q 024221 172 RNAFSRAYVR 181 (270)
Q Consensus 172 ~g~~~~~~i~ 181 (270)
+|..+...+.
T Consensus 319 dG~~iEvtLA 328 (506)
T KOG0117|consen 319 DGSPIEVTLA 328 (506)
T ss_pred cCceEEEEec
Confidence 9966544443
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.2e-26 Score=205.12 Aligned_cols=172 Identities=19% Similarity=0.352 Sum_probs=135.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||..+|+++|.++|+.||.|..+.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 467999999999999999999999999999999843 57889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC------CCCC---CCCCCCCCcccEEEecCCCCC----------CCHHHHHHHHHhcCCceEEEEEe
Q 024221 82 GGRGRSSSDRHSS------HSSG---RGRGVSRRSEYRVLVTGLPSS----------ASWQDLKDHMRRAGDVCFSQVFR 142 (270)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~v~~l~~~----------~t~~~l~~~f~~~g~i~~~~~~~ 142 (270)
............. .... ........+..+|+|.|+... ...++|.++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 5443322111110 0000 001112235568899998532 12367899999999999999986
Q ss_pred cC-------CCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 143 DG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 143 ~~-------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
.. ..|+|||+|.+.++|++|+..|||..|+|+.+
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 52 23699999999999999999999999999543
No 15
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=7.1e-28 Score=185.13 Aligned_cols=142 Identities=29% Similarity=0.551 Sum_probs=132.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (270)
-.|||||||..+++.+|+.+|++||+|.+|.|+ ++||||..++...|..|+.+|||..|+|..|.|+-++...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 369999999999999999999999999999998 7899999999999999999999999999999999887542
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc
Q 024221 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (270)
...++|+|+|+.+.++.+||+..|.+||.|+.|+|+++ |+||.|+-.++|..|+..|
T Consensus 76 -------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 76 -------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred -------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 23468999999999999999999999999999999999 9999999999999999999
Q ss_pred CCcccccceeee
Q 024221 167 DDSEFRNAFSRA 178 (270)
Q Consensus 167 ~g~~~~g~~~~~ 178 (270)
|+.++.|+..+.
T Consensus 133 ~~~~~~gk~m~v 144 (346)
T KOG0109|consen 133 DNTEFQGKRMHV 144 (346)
T ss_pred cccccccceeee
Confidence 999999965443
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.1e-26 Score=205.38 Aligned_cols=170 Identities=23% Similarity=0.371 Sum_probs=138.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccC----CceEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~i~v~ 78 (270)
..++|||+||+.++|+++|+++|+.||+|..+.+.. ++..+|||||+|.+.++|.+|+..|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999954 4677899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecC
Q 024221 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~ 155 (270)
++........... .................+|||+||+..+++++|.++|+.||.|..+.++.+. .+|||||.|.+
T Consensus 257 ~a~~k~er~~~~~-~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAELR-RKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHHHH-hhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 8754322100000 0000000011122345689999999999999999999999999999999874 34799999999
Q ss_pred HHHHHHHHHHcCCcccccce
Q 024221 156 YDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~ 175 (270)
.++|.+|+..|||..++|+.
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred HHHHHHHHHHhcCCeeCCce
Confidence 99999999999999999943
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=175.91 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=141.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
...+.|.|.-||.++|+++|+.+|..+|+|.+|++ +.+|++.||+||.|-+++||++|+..|||..|..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44567899999999999999999999999999999 447999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 156 (270)
.+... ...+.+|||.+||..+|+.+|+++|++||.|....|..+. ..|.|||.|...
T Consensus 119 RPSs~-------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSSD-------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCChh-------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 75332 2345699999999999999999999999999877776654 446999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
.+|++|+..|||..-.|. ..+|.|+....
T Consensus 180 ~EAe~AIk~lNG~~P~g~--tepItVKFann 208 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGC--TEPITVKFANN 208 (360)
T ss_pred hHHHHHHHhccCCCCCCC--CCCeEEEecCC
Confidence 999999999999988874 45677765443
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=165.34 Aligned_cols=165 Identities=22% Similarity=0.352 Sum_probs=138.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
....||||+||+..++++.|+++|-+.|+|..++++. +...+|||||+|.++|+|+-|+..||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999999955 4678999999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceE-EEEEecC----CCCEEEEEecC
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG----SGTTGIVDYTN 155 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~-~~~~~~~----~~~~~fv~f~~ 155 (270)
.... .....+.++||+||.+.+++..|.+.|+.||.+.. -.++.+. .+++|||.|.+
T Consensus 87 s~~~------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 87 SAHQ------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccc------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 6211 22233469999999999999999999999998764 3555554 34599999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
.+.+..|+..|||..+.++.++...-.++..
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9999999999999999996555544444433
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=187.09 Aligned_cols=168 Identities=24% Similarity=0.424 Sum_probs=141.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcc-cCC--ceEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~i~v~ 78 (270)
+.-.|||+.||..++|.||+++|++||.|.+|.|. .++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 44579999999999999999999999999999994 468999999999999999999999999855 444 478888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecC
Q 024221 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~ 155 (270)
+|...... ...+.+|||+-|+..+++.+++++|++||.|++|.|.++. ..|||||.|.+
T Consensus 113 ~Ad~E~er------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERER------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhhc------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 88643321 1235689999999999999999999999999999999885 45799999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeeeeeeccccCCCC
Q 024221 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDG 191 (270)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~~~~ 191 (270)
.+.|..|++.|||..-... +..++.|++.+..+++
T Consensus 175 ke~A~~Aika~ng~~tmeG-cs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEG-CSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHHHhhccceeecc-CCCceEEEecccCCCc
Confidence 9999999999999864422 3467778877665544
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=4.8e-25 Score=192.46 Aligned_cols=172 Identities=22% Similarity=0.361 Sum_probs=134.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999954 457899999999999999999999999999999999999653
Q ss_pred CCCCCCCC-------------------------------C------CCCCCC------------------------C-C-
Q 024221 83 GRGRSSSD-------------------------------R------HSSHSS------------------------G-R- 99 (270)
Q Consensus 83 ~~~~~~~~-------------------------------~------~~~~~~------------------------~-~- 99 (270)
........ . ...... . .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 0 000000 0 0
Q ss_pred ----C-CCC---CCCcccEEEecCCCCCCC----------HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHH
Q 024221 100 ----G-RGV---SRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (270)
Q Consensus 100 ----~-~~~---~~~~~~~~~v~~l~~~~t----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (270)
. ..+ ...+...|+|.||-...+ .++|.+.|.+||.|+.|.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 000 113456788888844433 3689999999999999999877777899999999999999
Q ss_pred HHHHcCCcccccceee
Q 024221 162 AIKKLDDSEFRNAFSR 177 (270)
Q Consensus 162 a~~~l~g~~~~g~~~~ 177 (270)
|+..|||..|+|+.+.
T Consensus 426 A~~~lnGr~f~gr~i~ 441 (457)
T TIGR01622 426 AFQALNGRYFGGKMIT 441 (457)
T ss_pred HHHHhcCcccCCeEEE
Confidence 9999999999996554
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=184.29 Aligned_cols=177 Identities=21% Similarity=0.337 Sum_probs=143.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..||||++||+.++.++|.++|+.+|+|..+.+.. .+..+||+||+|.-.++++.|+..+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999944 346799999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCC-----C--CCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CEEEEE
Q 024221 83 GRGRSSSDRHSSHSSGRG-----R--GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVD 152 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~ 152 (270)
.................. . .....+.+.|+|.|||+.+...+|+.+|+.||.|..|.|+....+ |||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 443321111100000000 0 011224789999999999999999999999999999999976544 699999
Q ss_pred ecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 153 YTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 153 f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
|....+|..|++.+|+.+|.| +.|.|+|+-
T Consensus 165 fk~~~dA~~Al~~~N~~~i~g----R~VAVDWAV 194 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDG----RPVAVDWAV 194 (678)
T ss_pred EeeHHHHHHHHHhccCceecC----ceeEEeeec
Confidence 999999999999999999999 555665543
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=174.97 Aligned_cols=162 Identities=22% Similarity=0.374 Sum_probs=129.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee--cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+.-.|+|.|||+.+.+.+|..+|+.||.|.+|.|+ .++..+|||||+|.+..+|..|+..+||..|+|++|-|.||-.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 35679999999999999999999999999999994 4677889999999999999999999999999999999999974
Q ss_pred CCCCCCCC-------------------------------------CCCCCCC--------------------C---C--C
Q 024221 83 GRGRSSSD-------------------------------------RHSSHSS--------------------G---R--G 100 (270)
Q Consensus 83 ~~~~~~~~-------------------------------------~~~~~~~--------------------~---~--~ 100 (270)
........ ......+ . + .
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 33211100 0000000 0 0 0
Q ss_pred C---------CCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHc
Q 024221 101 R---------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 101 ~---------~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l 166 (270)
. .....-+.+|||.|||+++|+++|.++|++||.|.++.++.++.+ |.|||.|.+..+|..|+...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0 000012368999999999999999999999999999999887544 69999999999999999976
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=159.68 Aligned_cols=170 Identities=24% Similarity=0.381 Sum_probs=137.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC--ceEEEEEc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~~ 80 (270)
.-.|||.+||+.+|..+|.++|++||.|+.-.| ..++.++|.+||.|....+|+.|+..|||..-.| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 357999999999999999999999999987777 3468999999999999999999999999987755 48999999
Q ss_pred cCCCCCCCCC-------CC-C--------------------------CCCCCC----------CCCCCCCcccEEEecCC
Q 024221 81 HGGRGRSSSD-------RH-S--------------------------SHSSGR----------GRGVSRRSEYRVLVTGL 116 (270)
Q Consensus 81 ~~~~~~~~~~-------~~-~--------------------------~~~~~~----------~~~~~~~~~~~~~v~~l 116 (270)
..+....... .+ . ...... .........+.|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8553221100 00 0 000000 01122235789999999
Q ss_pred CCCCCHHHHHHHHHhcCCceEEEEEec----CCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 117 PSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 117 ~~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.+++.+..|.++|.+||.|..|++++| +.+|||||.+.+.++|..|+..|||..++++.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 999999999999999999999999987 45689999999999999999999999999854
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.2e-24 Score=161.02 Aligned_cols=163 Identities=39% Similarity=0.663 Sum_probs=133.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (270)
..|||++||+.+.+.+|..||..||.|.++.|+ .||+||+|.+..+|..|+..|||..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 468999999999999999999999999999997 689999999999999999999999999999999998854322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHH
Q 024221 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (270)
........... ......+....+.+.|.+++..+.|++|.+.|.++|.+....+.. +++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcchh
Confidence 21100000011 122334556778999999999999999999999999996655533 3899999999999999999
Q ss_pred cCCcccccceeee
Q 024221 166 LDDSEFRNAFSRA 178 (270)
Q Consensus 166 l~g~~~~g~~~~~ 178 (270)
|++..+.+..++.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999954433
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=169.33 Aligned_cols=140 Identities=26% Similarity=0.392 Sum_probs=127.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 85 (270)
.+|||| +++|+.+|+++|+.+|+|..+++-. .+ +.|||||.|.++++|..|+..||...+.|++|++.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 478998 9999999999999999999999921 24 99999999999999999999999999999999999986422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC--CEEEEEecCHHHHHHHH
Q 024221 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAI 163 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~ 163 (270)
..+||.||++.++...|.++|+.||.|+.|.+..+..+ || ||+|++.++|.+|+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred -----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 23999999999999999999999999999999988654 58 99999999999999
Q ss_pred HHcCCcccccce
Q 024221 164 KKLDDSEFRNAF 175 (270)
Q Consensus 164 ~~l~g~~~~g~~ 175 (270)
+.+||..+.++.
T Consensus 133 ~~~ng~ll~~kk 144 (369)
T KOG0123|consen 133 EKLNGMLLNGKK 144 (369)
T ss_pred HHhcCcccCCCe
Confidence 999999999943
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=165.00 Aligned_cols=159 Identities=21% Similarity=0.351 Sum_probs=134.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
|.||||.|.+.+.++.|+.-|..||+|++|.+.+ |++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6899999999999999999999999999999944 6899999999999999999999999999999999999732210
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHH
Q 024221 84 RG-RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDD 158 (270)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~ 158 (270)
.. ++- ......+...-..|||..+.++.++++|+..|..||+|.+|.+..++. +||||++|.+...
T Consensus 194 pQAQpi---------ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 194 PQAQPI---------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cccchH---------HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 00 000 000001112456899999999999999999999999999999998854 4699999999999
Q ss_pred HHHHHHHcCCcccccc
Q 024221 159 MKHAIKKLDDSEFRNA 174 (270)
Q Consensus 159 a~~a~~~l~g~~~~g~ 174 (270)
..+|+..||-..++|.
T Consensus 265 ~~eAiasMNlFDLGGQ 280 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQ 280 (544)
T ss_pred hHHHhhhcchhhcccc
Confidence 9999999999999993
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.2e-22 Score=144.05 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=67.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
.+.|||+||+..+++.||+.+|..||.|..|+|.. ...+||||+|+++.+|+.|+..|+|+.|.| ..|+|+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC----ceEEEEeec
Confidence 57999999999999999999999999999999999 455699999999999999999999999999 666666433
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=7.2e-22 Score=168.89 Aligned_cols=164 Identities=23% Similarity=0.409 Sum_probs=135.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CC----CCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|+.|+|..|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 99999999999999999999999999998833 22 3459999999999999999999999999999999999971
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCCCEEEEEecCHHH
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDD 158 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~ 158 (270)
.+..... ..-......+.|.|.|||+.++..+++++|..||.+..|.++.. ...|||||+|-++.+
T Consensus 598 -k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 598 -KPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred -ccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 1111100 11122233679999999999999999999999999999999865 234699999999999
Q ss_pred HHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 159 MKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 159 a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
|..|+++|....+.| +.+.+.|..
T Consensus 668 a~nA~~al~STHlyG----RrLVLEwA~ 691 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYG----RRLVLEWAK 691 (725)
T ss_pred HHHHHHhhcccceec----hhhheehhc
Confidence 999999999999888 555555443
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.88 E-value=1.4e-21 Score=143.56 Aligned_cols=80 Identities=36% Similarity=0.613 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.-.+|.|.||.+.++.++|+.+|++||.|-+|.|+ .|.+++|||||.|.+..+|+.|+..|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999994 478999999999999999999999999999999999999987
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 544
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.87 E-value=8.7e-21 Score=142.09 Aligned_cols=168 Identities=21% Similarity=0.324 Sum_probs=137.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.++.||||.||+..+..++|+. +|++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|++++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4666999999999999999888 999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC------C--------------CCCCCCC-------C--CC-C-CCCCCcccEEEecCCCCCCCHHHHHHH
Q 024221 80 AHGGRGRSSS------D--------------RHSSHSS-------G--RG-R-GVSRRSEYRVLVTGLPSSASWQDLKDH 128 (270)
Q Consensus 80 ~~~~~~~~~~------~--------------~~~~~~~-------~--~~-~-~~~~~~~~~~~v~~l~~~~t~~~l~~~ 128 (270)
|......-.. . .+....+ . .. . ....++...+++.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9843311000 0 0000000 0 00 0 122456678999999999999999999
Q ss_pred HHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc
Q 024221 129 MRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (270)
Q Consensus 129 f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (270)
|.+|.....+.++.... +.|||+|.+...|..|...+.+..+.
T Consensus 167 f~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999998888876644 48999999999999999999988776
No 31
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.6e-20 Score=134.58 Aligned_cols=78 Identities=50% Similarity=0.841 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
-.+.|||+||+..+++.||..+|..||+|..|.|.. .+.|||||+|+++.+|+.|+..|+|+.|.|..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 478999999999999999999999999999999954 558999999999999999999999999999999999997543
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2e-20 Score=155.96 Aligned_cols=159 Identities=26% Similarity=0.435 Sum_probs=135.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++...|||.||++.++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|.+|+..|||..+.|+.|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 456666999999999999999999999999999999543 338899 999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDD 158 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~ 158 (270)
......... .......+.++|.+++.+++++.|.++|..+|.|..+.++.+. +.+|+||.|+++++
T Consensus 152 ~~~er~~~~-----------~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 152 RKEEREAPL-----------GEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred chhhhcccc-----------cchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 433211111 0122345689999999999999999999999999999999864 45699999999999
Q ss_pred HHHHHHHcCCccccc
Q 024221 159 MKHAIKKLDDSEFRN 173 (270)
Q Consensus 159 a~~a~~~l~g~~~~g 173 (270)
|..|+..|++..+.+
T Consensus 221 a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGD 235 (369)
T ss_pred HHHHHHhccCCcCCc
Confidence 999999999999986
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=2.6e-19 Score=156.27 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++|||+||++++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999954 46789999999999999999999999999999999998876
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-20 Score=144.23 Aligned_cols=139 Identities=24% Similarity=0.391 Sum_probs=115.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
|-+...+||||+||...+||+-|..||.++|.|..++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 34568899999999999999999999999999999998744 5667776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 156 (270)
..+..++. +.......++|+.|...++-+.|++.|.+||+|..+++++|. .+|||||.|.+.
T Consensus 49 ~~p~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 54422211 222235689999999999999999999999999999999884 457999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeeccccCC
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 189 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~~ 189 (270)
++|+.|+..|||..|++ +.|+.-+..++.
T Consensus 115 ~dAEnAI~~MnGqWlG~----R~IRTNWATRKp 143 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGR----RTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHHhCCeeecc----ceeeccccccCc
Confidence 99999999999999998 667766665543
No 35
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=8.5e-20 Score=135.76 Aligned_cols=169 Identities=23% Similarity=0.370 Sum_probs=129.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCC----CceEEEEecCHHHHHHHHHhcCCcccC---CceEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRV 77 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~i~v 77 (270)
.-+||||.+||.++...+|+.+|..|--.....++.+.+. +.+|||+|.+..+|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999977777888776554 379999999999999999999999996 889999
Q ss_pred EEccCCCCCCCCCCCCCCCCC-----------------------------------C-----------------------
Q 024221 78 ELAHGGRGRSSSDRHSSHSSG-----------------------------------R----------------------- 99 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~----------------------- 99 (270)
++++..............+.. .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999843321110000000000 0
Q ss_pred ---------CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcc
Q 024221 100 ---------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (270)
Q Consensus 100 ---------~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (270)
..+.......+|||.||.+++++++|+++|+.|.....+.|......-.||++|++.+.|..||..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00011113458999999999999999999999998777766544333489999999999999999999988
Q ss_pred ccc
Q 024221 171 FRN 173 (270)
Q Consensus 171 ~~g 173 (270)
+..
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 36
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.84 E-value=1.2e-21 Score=156.50 Aligned_cols=166 Identities=15% Similarity=0.145 Sum_probs=121.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC------CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
....|.|.||.+++|.++++.||..+|+|.++.|..+ ......|||.|.+...+..|.. |.+++|-|..|.|-
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3458999999999999999999999999999999542 2334699999999999999988 88888888888776
Q ss_pred EccCCCCCCC---------CCCCCCCCCCC------CC------------CCCCC----------cccEEEecCCCCCCC
Q 024221 79 LAHGGRGRSS---------SDRHSSHSSGR------GR------------GVSRR----------SEYRVLVTGLPSSAS 121 (270)
Q Consensus 79 ~~~~~~~~~~---------~~~~~~~~~~~------~~------------~~~~~----------~~~~~~v~~l~~~~t 121 (270)
+......+.. ...+...+..+ +. .++.+ -..+++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 5543221111 00000000000 00 01111 113588999999999
Q ss_pred HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc
Q 024221 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (270)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (270)
..++.+.|..+|.|.+.++.......+|.++|........|+. ++|.++.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999999888777789999998888888887 5565554
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=2.1e-21 Score=161.80 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
++.+|||+-.|+..+++.+|.+||+.+|.|.+|.++. +..++|.|||+|.+.+++..|+. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 5678899999999999999999999999999999954 56789999999999999999997 9999999999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 156 (270)
........... ....+. ....+...|||+||..++++++|..+|..||.|..|++..+. .+|||||+|.+.
T Consensus 256 Eaeknr~a~~s-~a~~~k----~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRAANAS-PALQGK----GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHHHhcc-cccccc----ccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 54332210000 000000 111122239999999999999999999999999999998874 457999999999
Q ss_pred HHHHHHHHHcCCcccccceee
Q 024221 157 DDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~ 177 (270)
++|..|+.+|||-++.|....
T Consensus 331 ~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred HHHHHHHHHhccceecCceEE
Confidence 999999999999999996654
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=1e-19 Score=151.90 Aligned_cols=171 Identities=23% Similarity=0.387 Sum_probs=127.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
..|||+||..++++++|+.+|+.||.|..|.+.. +|..+||+||+|.+.++|.+|+.+|||..|.|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3389999999999999999999999999999943 6899999999999999999999999999999999999776543
Q ss_pred CCCCCC-CCCCCCC----------CCC----------------------------------C--------CCCCC-----
Q 024221 84 RGRSSS-DRHSSHS----------SGR----------------------------------G--------RGVSR----- 105 (270)
Q Consensus 84 ~~~~~~-~~~~~~~----------~~~----------------------------------~--------~~~~~----- 105 (270)
...... ....... ..+ . ...+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 322211 0000000 000 0 00000
Q ss_pred --CcccEEEecCC--CCCCC--------HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 106 --RSEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 106 --~~~~~~~v~~l--~~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.+...+.+.|+ |...| .+++.+.+.+||+|+.|.+..+.. |+.||.|.+.+.|..|+..|||..|.|
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~g 517 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAG 517 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhcc
Confidence 11223333332 11111 467888899999999999887766 799999999999999999999999999
Q ss_pred ceeee
Q 024221 174 AFSRA 178 (270)
Q Consensus 174 ~~~~~ 178 (270)
+.++.
T Consensus 518 r~Ita 522 (549)
T KOG0147|consen 518 RMITA 522 (549)
T ss_pred ceeEE
Confidence 88764
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.8e-19 Score=130.30 Aligned_cols=81 Identities=26% Similarity=0.525 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+++|||+|||+.+|+++|+++|++||+|..|.|+. +++++|||||+|.+.++|+.|+..||+..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578999999999999999999999999999999954 57889999999999999999999999999999999999997
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.3e-19 Score=136.97 Aligned_cols=83 Identities=36% Similarity=0.651 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
.++|-+||||+-|+++++|..|+..|+.||+|+.|.|+ .|++++|||||+|.++.+...|+...+|++|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35788999999999999999999999999999999994 479999999999999999999999999999999999999
Q ss_pred EccCCC
Q 024221 79 LAHGGR 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
+.....
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 876543
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1.7e-19 Score=145.24 Aligned_cols=159 Identities=20% Similarity=0.371 Sum_probs=132.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
+....++|||++|++.++++.|++.|.+||+|.+|.++. ++.++||+||+|.+++.+..++. .....|+|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 345789999999999999999999999999999999955 57889999999999999998887 56678999999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEec
Q 024221 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYT 154 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~ 154 (270)
.+.+...+...... .....|||++||.++++++++++|.+||.|..+.++.+.. .+|+||.|.
T Consensus 81 ~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 88755433222211 1346999999999999999999999999999999988854 359999999
Q ss_pred CHHHHHHHHHHcCCcccccce
Q 024221 155 NYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 155 ~~~~a~~a~~~l~g~~~~g~~ 175 (270)
..+.+.+++. ..-..|+++.
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~ 167 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKK 167 (311)
T ss_pred cccccceecc-cceeeecCce
Confidence 9999988877 6666666643
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.3e-19 Score=144.51 Aligned_cols=76 Identities=30% Similarity=0.457 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcc-c--CCceEEEEEc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-F--DGHRLRVELA 80 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~--~g~~i~v~~~ 80 (270)
.+.|||+-|++.+||.+|+++|.+||.|.+|.|.. ++.++|||||.|.+.+.|..|++.|||.. + ...+|.|.||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 67899999999999999999999999999999965 57899999999999999999999999954 3 3569999998
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 204 D 204 (510)
T KOG0144|consen 204 D 204 (510)
T ss_pred c
Confidence 8
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=9.9e-19 Score=133.55 Aligned_cols=169 Identities=22% Similarity=0.325 Sum_probs=132.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCccc-C--CceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF-D--GHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~--g~~i~v~~ 79 (270)
+.+.||||-|.+.-.|+|++.+|..||+|.+|.+.. ++.++|+|||.|.+..+|..||..|||..- . .-.|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578899999999999999999999999999999954 688999999999999999999999999543 3 44788888
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 024221 80 AHGGR--------------------------------------------------------------------------- 84 (270)
Q Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (270)
+.-.+
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 87000
Q ss_pred --CC-CCCCCCC------------C-----------CCCC----------------------------------------
Q 024221 85 --GR-SSSDRHS------------S-----------HSSG---------------------------------------- 98 (270)
Q Consensus 85 --~~-~~~~~~~------------~-----------~~~~---------------------------------------- 98 (270)
.+ .....+. . ...+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00 0000000 0 0000
Q ss_pred ---------C---------CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCC----EEEEEecCH
Q 024221 99 ---------R---------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNY 156 (270)
Q Consensus 99 ---------~---------~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~~ 156 (270)
. ....+-+.+++|||-.||.+..+.||.++|-.||.|...++..|..+. |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 000112367899999999999999999999999999999988775443 999999999
Q ss_pred HHHHHHHHHcCCccccc
Q 024221 157 DDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g 173 (270)
..|+.|+..|||-.|+=
T Consensus 338 ~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhHHHHHHHhcchhhhh
Confidence 99999999999999975
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=3.7e-19 Score=120.89 Aligned_cols=79 Identities=38% Similarity=0.601 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+.++||||+||+..++|++|.+||++||+|..|.| .++..+.|||||+|...++|..|+..+||+.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999998 456678999999999999999999999999999999999987
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 64
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=6.4e-17 Score=127.96 Aligned_cols=178 Identities=20% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
.-++.|||.|||.++|.+++.++|.+||-|.. |+| ...|+.+|-|+|.|-..+++..|+..|++..|.|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34667999999999999999999999997643 344 33588999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCCCCCCCCC-----------------C--CCCCCCCcccEEEecCCCC----CCC-------HH
Q 024221 74 RLRVELAHGGRGRSSSDRHSSHSSG-----------------R--GRGVSRRSEYRVLVTGLPS----SAS-------WQ 123 (270)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~v~~l~~----~~t-------~~ 123 (270)
.|+|+.|+................. . ..+.-.....+|.+.|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999998854432211111100000 0 0011123456788888511 122 56
Q ss_pred HHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 124 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 124 ~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
+|.+.+.+||.|..|.+....+.|.+.|.|.+.++|..++..|+|..|+|+..++.+.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 7778899999999999998888999999999999999999999999999977666554
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.76 E-value=2.1e-17 Score=121.75 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+.....+.|.|-||.+.++.++|..+|++||.|.+|.|..+.. .|||||-|....+|+.|++.|+|..++|+.
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 4445567999999999999999999999999999999998853 469999999999999999999999999943
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=3.5e-17 Score=135.15 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=126.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
....|.+.+|||++|++||.+||+.| .|..+.+.. +++..|-|||+|.+++++++|++ .+-..+..+.|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 45568899999999999999999999 577777755 49999999999999999999999 8888899999999877644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceE-EEEEec---CCCCEEEEEecCHHHH
Q 024221 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDM 159 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~-~~~~~~---~~~~~~fv~f~~~~~a 159 (270)
...-..... +. ........|-+.+||+.||+++|.++|+..-.|.. +.+..+ ...+-|||.|++.+.|
T Consensus 87 e~d~~~~~~------g~--~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 87 EADWVMRPG------GP--NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred cccccccCC------CC--CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 331111000 00 11134568999999999999999999998766555 334333 4557899999999999
Q ss_pred HHHHHHcCCcccccceeeeeeeee
Q 024221 160 KHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 160 ~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
++|+. -|...|+. ++|.|.
T Consensus 159 e~Al~-rhre~iGh----RYIEvF 177 (510)
T KOG4211|consen 159 EIALG-RHRENIGH----RYIEVF 177 (510)
T ss_pred HHHHH-HHHHhhcc----ceEEee
Confidence 99998 45555555 666655
No 48
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=142.66 Aligned_cols=174 Identities=21% Similarity=0.285 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
+..+.|+|+|||..+..++|.+.|..||+|..+.|+..| ..|+|+|.++.+|.+|+..|+...+...+|.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 466899999999999999999999999999999665222 36999999999999999999999999999999998855
Q ss_pred CCC--CCCCCC---CCCC-----------CCCC----CC----------CCC-CcccEEEecCCCCCCCHHHHHHHHHhc
Q 024221 84 RGR--SSSDRH---SSHS-----------SGRG----RG----------VSR-RSEYRVLVTGLPSSASWQDLKDHMRRA 132 (270)
Q Consensus 84 ~~~--~~~~~~---~~~~-----------~~~~----~~----------~~~-~~~~~~~v~~l~~~~t~~~l~~~f~~~ 132 (270)
... +..... .... ..+. .. ... ...+.|||.||++.++.+.|...|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 443 111000 0000 0000 00 000 122349999999999999999999999
Q ss_pred CCceEEEEEecCCC-------CEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 133 g~i~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
|.|..+.|.....+ |||||+|.+.++|+.|+..|+|..+.|+..-..+
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 99999988766543 8999999999999999999999999997644433
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=129.53 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
..++|||+|||+.+|+++|+++|+.||+|..|.|..++..+|||||+|.++++|..|+. |||..|.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999998777778999999999999999996 99999999999999987554
Q ss_pred C
Q 024221 85 G 85 (270)
Q Consensus 85 ~ 85 (270)
.
T Consensus 82 ~ 82 (260)
T PLN03120 82 L 82 (260)
T ss_pred C
Confidence 3
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.74 E-value=1.4e-16 Score=128.65 Aligned_cols=167 Identities=16% Similarity=0.251 Sum_probs=136.7
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 6 ~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
+++|.|.||.. .+|++.|..+|..||+|..|+|.... +..|+|+|.+...|+.|+..|+|..+.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 68999999955 59999999999999999999996544 3799999999999999999999999999999999999776
Q ss_pred CCCCCCCCCCCC----------------CCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCE
Q 024221 85 GRSSSDRHSSHS----------------SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (270)
Q Consensus 85 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~ 148 (270)
-+.+.+.....+ +........++..++++.|+|+.+++++|++.|...|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 555443322211 0111112335667999999999999999999999999877666666655569
Q ss_pred EEEEecCHHHHHHHHHHcCCcccccc
Q 024221 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
|++.+++.++|..|+-.++...+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999888764
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=1.5e-16 Score=129.44 Aligned_cols=168 Identities=24% Similarity=0.350 Sum_probs=131.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.+.+||+|||+++.+++|++||. +.|+|..|.+.. .++.+|+|.|+|+++|.+++|++.||...+.|++|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999998 789999999965 488999999999999999999999999999999999975542
Q ss_pred CCCCCC------------------------------------------CCCCCCCCCC----------------------
Q 024221 83 GRGRSS------------------------------------------SDRHSSHSSG---------------------- 98 (270)
Q Consensus 83 ~~~~~~------------------------------------------~~~~~~~~~~---------------------- 98 (270)
.+-... ..........
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 110000 0000000000
Q ss_pred --CCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 99 --RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 99 --~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.......+-...+||.||.+.+....|.+.|.-.|.|..+.+-.++ ..++|.++|.++-+|.+|+..+++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0011233344589999999999999999999999999999887664 44699999999999999999999755444
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=1.2e-17 Score=107.26 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEE
Q 024221 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 76 (270)
|||+|||+++|+++|+++|++||.|..+.+.. ++..+++|||+|.+.++|++|+..|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999954 577889999999999999999999999999999885
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=6e-17 Score=141.36 Aligned_cols=127 Identities=21% Similarity=0.288 Sum_probs=99.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++|||+||++++|+++|+++|+.| |+|..|.+. ++||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999976
Q ss_pred CCCCCCCCCC-CCC--------CCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCce
Q 024221 83 GRGRSSSDRH-SSH--------SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (270)
Q Consensus 83 ~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~ 136 (270)
.......... ... ..............++++.|+++.++..-+.++|..+|.|.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 4332110000 000 00001112223467899999999999999999999988764
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.71 E-value=4.4e-16 Score=119.29 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
...||||+||++.+|+++|++||+.||+|..|.|..++...++|||+|.++++|..|+. |||..|.|+.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 55899999999999999999999999999999998888888999999999999999997 99999999999999877544
Q ss_pred C
Q 024221 85 G 85 (270)
Q Consensus 85 ~ 85 (270)
.
T Consensus 83 ~ 83 (243)
T PLN03121 83 D 83 (243)
T ss_pred c
Confidence 3
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=7.8e-17 Score=136.26 Aligned_cols=179 Identities=20% Similarity=0.342 Sum_probs=130.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.|||+|||..++++++.+++..||++....+.. ++.++||||.+|.++..+..|+..|||+.++++.|.|+.|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 456799999999999999999999999999998843 57899999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCC--C-CCCCCCC--CCCCCCcccEEEecCC--CCCC-C-------HHHHHHHHHhcCCceEEEEEec-C-
Q 024221 82 GGRGRSSSDRH--S-SHSSGRG--RGVSRRSEYRVLVTGL--PSSA-S-------WQDLKDHMRRAGDVCFSQVFRD-G- 144 (270)
Q Consensus 82 ~~~~~~~~~~~--~-~~~~~~~--~~~~~~~~~~~~v~~l--~~~~-t-------~~~l~~~f~~~g~i~~~~~~~~-~- 144 (270)
........... . ....... ......+...|.+.|+ |.+. . .++++..|.+||.|..|.+... .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65544333222 0 0000000 0111122233333332 1111 1 2445667789999999999877 2
Q ss_pred -----CCCEEEEEecCHHHHHHHHHHcCCccccccee-eeeeeee
Q 024221 145 -----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVRVR 183 (270)
Q Consensus 145 -----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~-~~~i~~~ 183 (270)
..|..||+|.+.++++.|+..|+|..|+|+.+ ..|+.++
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 23588999999999999999999999999764 3444433
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=125.11 Aligned_cols=140 Identities=31% Similarity=0.533 Sum_probs=109.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.++|||+|||+.+|+++|.++|..||.|..+.+.. ++..+|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998844 579999999999999999999999999999999999999753
Q ss_pred -CCCCCCCC----CCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC
Q 024221 83 -GRGRSSSD----RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 145 (270)
Q Consensus 83 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~ 145 (270)
........ ....................+++.+++..++..++...|..+|.+..+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111000 0000001111223344567899999999999999999999999997666655543
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.3e-16 Score=119.21 Aligned_cols=79 Identities=41% Similarity=0.649 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|-|.||+.++++++|.+||.+||.|..|.| ..||.++|||||.|.+.++|++|+..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46889999999999999999999999999999999 458999999999999999999999999999999999999999
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=3.6e-16 Score=102.40 Aligned_cols=78 Identities=37% Similarity=0.525 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.+..|||.|||.++|.+++.++|.+||.|.+|.|=.+...+|.|||.|++..+|.+|+..|+|.-+.++.|.|-+-..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 467899999999999999999999999999999977778899999999999999999999999999999999988753
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=8.1e-15 Score=117.01 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
-+.|||..+.++++++||+..|+.||+|..|.+.. ....+||+||+|.+..+...|+..||-..|+|+.|+|..+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 36799999999999999999999999999999933 46779999999999999999999999999999999997554
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.4e-17 Score=120.23 Aligned_cols=81 Identities=28% Similarity=0.537 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++--|||||||+.+|+.||...|++||+|.+|.+ ..||+++||||+.|+++.+...|+..|||..|.|+.|+|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 5678999999999999999999999999999999 4589999999999999999999999999999999999999886
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 114 ~Yk~ 117 (219)
T KOG0126|consen 114 NYKK 117 (219)
T ss_pred cccC
Confidence 5443
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=3.6e-16 Score=100.33 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC--CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEE
Q 024221 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 56789999999999999999999999999999874
No 62
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=2.7e-15 Score=124.63 Aligned_cols=81 Identities=32% Similarity=0.529 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~ 79 (270)
..++|||+|||+.+|+++|+++|++||+|..|.|.. ++.+++||||+|.+.++|++|+..||+..|.| +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999843 57888999999999999999999999998876 6899999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886543
No 63
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.3e-14 Score=112.83 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=64.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.+-.+|||.-|++++++..|+..|..||.|..|.|+.+ +..|||||+|++..+...|.+..+|..|+|+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 45679999999999999999999999999999999988 4557999999999999999999999999994
No 64
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=2.8e-15 Score=121.18 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=134.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC--cccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~~~ 81 (270)
-+++.|.++|||++++|++|..++..||.|..+.+. +.+..|||+|.+.++|...+..... -.+.|++|.|+|+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l---kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML---KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeee---ccchhhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 489999999999999999999999999999999886 4456999999999998875544333 23578999998876
Q ss_pred CCCCCCCCCCC----------------C-CCCCC--C--CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEE
Q 024221 82 GGRGRSSSDRH----------------S-SHSSG--R--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (270)
Q Consensus 82 ~~~~~~~~~~~----------------~-~~~~~--~--~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~ 140 (270)
........... . ..... - .....+..-..++|.++-+.++-+.|.++|+.||.|..|..
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 33221111100 0 00000 0 01112223357889999999999999999999999999888
Q ss_pred EecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 141 FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 141 ~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
.....+.-|+|+|.+...|..|...|+|..|.+.+++.+|...
T Consensus 183 F~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 183 FTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 8887777899999999999999999999999887766666543
No 65
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1e-15 Score=105.17 Aligned_cols=77 Identities=27% Similarity=0.516 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
.|||+++...+|+++|.+.|..||+|+.|.++. +|-.+|||+|+|++.++|+.|+..|||..|.|+.|.|.|+....
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 589999999999999999999999999999954 68889999999999999999999999999999999999997543
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.61 E-value=4.8e-14 Score=112.89 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
-+.+.+.|.+|.. .++.+.|.++|..||.|..|++++|. .|.|+|++-+...++.|+..||+..+.|..|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4678999999966 48999999999999999999998665 68999999999999999999999999999999998875
Q ss_pred CCCCCCCC--------CCCCCCC----------CCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCC-ceEEEEEec
Q 024221 83 GRGRSSSD--------RHSSHSS----------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 143 (270)
Q Consensus 83 ~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~-i~~~~~~~~ 143 (270)
....+... ..+.+.. .......+.+...|+..|.|..+|++.|.++|...+. ...+++...
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 43222100 0000000 1122344567789999999999999999999998774 456666655
Q ss_pred CCC--CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 144 GSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 144 ~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
+.. ..+.++|++.++|.+|+..+|...+.+.....+..+++
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKl 485 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKL 485 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeee
Confidence 432 37899999999999999999999999865544444443
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=119.29 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
...+.|+|.|||...-+.||+.+|++||.|.+|.|++ ...+|||+||+|++++||++|-.+|||..|.|+.|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4567899999999999999999999999999999965 457899999999999999999999999999999999998875
Q ss_pred C
Q 024221 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.2e-16 Score=122.39 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
-|.++|||..|++-+|+++|.-+|+.||.|..|.|+ .||.+..||||+|.+.+++++|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 478999999999999999999999999999999994 47889999999999999999999999999999999999998
Q ss_pred cCC
Q 024221 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 743
No 69
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=3.9e-14 Score=103.30 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=69.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+|||+|||+.+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++.||+..|+| ..+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l~ 107 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHIR 107 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 345689999999999999999999999999999998775 35799999999999999999999999999 5666
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|.+...+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 6665443
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=8.4e-15 Score=94.11 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
+|||+|||..+++++|.++|..||+|..+.+..+ +.+.++|||+|.+.++|..|+..|+|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988543 567799999999999999999999999999999887
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.3e-15 Score=113.43 Aligned_cols=75 Identities=27% Similarity=0.452 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+.||||||+|.++.+.|+++|++||+|.+..| ..+++++||+||+|.+.++|..|+..- +-.|+|+.-.|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 57999999999999999999999999999888 457899999999999999999999944 4679999999999875
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=5.7e-15 Score=122.23 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCH--HHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
...-+||||||++.+|+++|..+|..||.|..|.|+... .+|||||+|... .++.+|+..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 456789999999999999999999999999999997432 299999999987 68999999999999999999999887
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.57 E-value=1.9e-13 Score=111.67 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
....|||.||...+..+.|++.|.-.|.|+.|.+ .+.+.++|+|.|+|.++-.|-+|+..|++.-++.++..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 4567999999999999999999999999999988 44578899999999999999999999998777777777765
No 74
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.2e-15 Score=110.71 Aligned_cols=84 Identities=35% Similarity=0.616 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
...+|||||+|...||+..|...|-+||.|.+|.++. +.+.+|||||+|...|+|..|+..||+..|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3578999999999999999999999999999999965 4788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 024221 81 HGGRGRS 87 (270)
Q Consensus 81 ~~~~~~~ 87 (270)
.+.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9766543
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=4.6e-14 Score=86.09 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.8
Q ss_pred HHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 23 l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999996444 599999999999999999999999999999999986
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1e-13 Score=89.51 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCC--CCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
+|+|+|||+.+++++|.++|+.||+|..+.+.... .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996433 4689999999999999999999999999999999864
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=6.6e-14 Score=89.54 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=62.0
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 11 v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
|+|||..+++++|+++|+.||.|..+.+.. ++.++|+|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999854 4667899999999999999999999999999999887
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=1.2e-13 Score=88.55 Aligned_cols=65 Identities=20% Similarity=0.391 Sum_probs=59.7
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 111 ~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
|||+|||+++++++|.++|.+||.|..+.+..+ ...++|||+|.+.++|+.|++.|+|..++|+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 799999999999999999999999999999986 23359999999999999999999999999853
No 79
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1.5e-13 Score=115.90 Aligned_cols=78 Identities=33% Similarity=0.672 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
++|||||||+.+++++|..+|+..|.|..++++. +|.++||||++|.++++|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 6899999999999999999999999999999999999998854
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.48 E-value=8.8e-12 Score=100.12 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=127.2
Q ss_pred CCCCeEEEcCCC--CCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc--CCceEEEEE
Q 024221 4 RASRTLYVGNLP--GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~--~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~i~v~~ 79 (270)
.++..|.++=|+ +.+|.+.|..+....|+|..|.|... .--.|+|||++.+.|++|.+.|||..| +...|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 466677766554 46999999999999999999988432 234899999999999999999999887 467899999
Q ss_pred ccCCCCCCC----------------------------------CCCCCCCCC-------C---CC---------------
Q 024221 80 AHGGRGRSS----------------------------------SDRHSSHSS-------G---RG--------------- 100 (270)
Q Consensus 80 ~~~~~~~~~----------------------------------~~~~~~~~~-------~---~~--------------- 100 (270)
|++.+.... ...+....+ . ++
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 984331000 000000000 0 00
Q ss_pred ----CCCCCCcccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 101 ----RGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 101 ----~~~~~~~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
......++..+.|-+|... ++-+.|..+|..||.|..|.+++.+.+ .|.|++.+..+.+.|+..||+..+-|..
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccccce
Confidence 0012235678999999876 588999999999999999999988664 8999999999999999999999888843
No 81
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.7e-13 Score=112.14 Aligned_cols=77 Identities=31% Similarity=0.557 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 85 (270)
-+.|||.||+.++|++.|+++|++||.|..|+.. +.||||.|.+-++|.+|+..+||+.|.|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 4689999999999999999999999999999876 56999999999999999999999999999999999997654
Q ss_pred CC
Q 024221 86 RS 87 (270)
Q Consensus 86 ~~ 87 (270)
..
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 43
No 82
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=1.7e-13 Score=106.33 Aligned_cols=74 Identities=42% Similarity=0.730 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..+++|+|+||.+.++.++|+..|++||+|++|+|. ++|+||.|.-.++|..|+..|||.+|.|++|+|+++..
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 478999999999999999999999999999999998 78999999999999999999999999999999999874
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=100.89 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=65.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
..+|||+|||+.+++++|+++|+.||.|..|.|..+. ..+||||+|++.++|+.|+. |+|..|.| ..+.|...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g----r~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD----QSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC----ceEEEEec
Confidence 3689999999999999999999999999999999886 46799999999999999996 99999999 44555543
No 84
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=1.8e-12 Score=82.79 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.7
Q ss_pred HHHHHHHHh----hcCCeeEEE-eec---C--CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 20 ~~~l~~~F~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
+++|.++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 422 3 778999999999999999999999999999999986
No 85
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=2e-12 Score=104.08 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=119.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEe-ec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKY----GPIAHIDL-KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~----G~v~~~~~-~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
-.|-+.+||+++|+.|+.+||..- |.+..|.+ .. +|...|-|||.|..+++|+.|+. -|...++.+.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 356788999999999999999622 23334443 33 78999999999999999999998 5555666666665332
Q ss_pred cCCC----------C--CCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCC-ceE--EEEEecC-
Q 024221 81 HGGR----------G--RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDG- 144 (270)
Q Consensus 81 ~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~-i~~--~~~~~~~- 144 (270)
.... . .+....+.........-+.......|-+.+||+.++.++|.++|..|.. |.. |++..+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 2000 0 0000000000011122234445668999999999999999999999874 333 6776654
Q ss_pred --CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 145 --SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 145 --~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
..|-|||+|.+.++|..|..+.+++...+ ++|.|.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvf 357 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVF 357 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEe
Confidence 44689999999999999999988888766 566655
No 86
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.7e-11 Score=102.55 Aligned_cols=166 Identities=22% Similarity=0.314 Sum_probs=111.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-----CCCCCc---eEEEEecCHHHHHHHHHhcCCcccCCceEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-----PPRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-----~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 76 (270)
-++.||||+||++++|++|...|..||.+..=.-.+ --.++| |+|+.|+++..++..+..+.- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 467899999999999999999999999875221111 123456 999999999998877765432 222232
Q ss_pred EEEccCCCCCCCCC-CC---CCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHH-hcCCceEEEEEecC----CCC
Q 024221 77 VELAHGGRGRSSSD-RH---SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDG----SGT 147 (270)
Q Consensus 77 v~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~-~~g~i~~~~~~~~~----~~~ 147 (270)
+..+........-. .+ ....--......-.+..+|||++||-.++.++|..+|. .||.|+++-|..|+ ..|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 22222211111000 00 00000001123334667999999999999999999998 89999999998883 446
Q ss_pred EEEEEecCHHHHHHHHHH----cCCccccc
Q 024221 148 TGIVDYTNYDDMKHAIKK----LDDSEFRN 173 (270)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~----l~g~~~~g 173 (270)
-|=|+|.+...-.+|+.+ |+..+|..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce
Confidence 789999999999999875 45555543
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=89.05 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=68.7
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
..++.|||.++...+++++|.+.|..||+|.++++..+..+ |||+|+|++.++|+.|+..+||..+.| ..+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Ccee
Confidence 45789999999999999999999999999999999988655 499999999999999999999999999 5566
Q ss_pred eeccc
Q 024221 182 VREYD 186 (270)
Q Consensus 182 ~~~~~ 186 (270)
|+++-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 66543
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.5e-12 Score=92.76 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=69.9
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
....|||+|||.++.+.+|+++|-+||.|..|.+..-.. ..||||+|+++.+|+.|+..-+|..++| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 346899999999999999999999999999999876543 4599999999999999999999999999 77888877
Q ss_pred ccCC
Q 024221 186 DHRR 189 (270)
Q Consensus 186 ~~~~ 189 (270)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6654
No 89
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.38 E-value=1.6e-12 Score=113.20 Aligned_cols=77 Identities=31% Similarity=0.588 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
-++|||||+|+.++++.||.++|+.||+|..|.++ .++++|||.+..-.+|.+|+..|++..+.++.|+|.|+....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 36899999999999999999999999999999997 678999999999999999999999999999999999997644
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.7e-12 Score=87.06 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=68.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
..++|||+||+.-+++++|.++|+++|.|..|.+-.+..+ |||||+|...++|+.|+..++|..++. ..|++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----cceee
Confidence 5679999999999999999999999999999888766443 599999999999999999999999998 77777
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
+++..
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 76654
No 91
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=3.8e-12 Score=81.50 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.1
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 111 ~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
|+|+|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..++|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 78999999999999999999999999999998864 459999999999999999999999999843
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.3e-13 Score=101.42 Aligned_cols=139 Identities=20% Similarity=0.279 Sum_probs=113.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..+||||+|+...|+++-|.++|-+-|+|..|.|.. ++..+ ||||.|.++.++..|+..+||..+.+..|+|++-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 457999999999999999999999999999999944 45555 999999999999999999999999999999977543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHH
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDM 159 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a 159 (270)
..-. -|...++.+.+...|+..|.+..+.+..+.. ..++|+.+.-....
T Consensus 87 ~sha----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 87 NSHA----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCcc----------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 2111 1344567788888899999998888876644 34888988888788
Q ss_pred HHHHHHcCCcccc
Q 024221 160 KHAIKKLDDSEFR 172 (270)
Q Consensus 160 ~~a~~~l~g~~~~ 172 (270)
..++....+....
T Consensus 139 P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 139 PFALDLYQGLELF 151 (267)
T ss_pred cHHhhhhcccCcC
Confidence 8888877776554
No 93
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=9.1e-13 Score=116.42 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=129.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC--CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.|||++||...+++.+|+..|..+|.|..|.|..+ +....||||.|.+...+-.|...+.+..|....+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 57899999999999999999999999999999999543 4455699999999999999999999988876666665543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (270)
. .....+.+++++|++.+....|..+|..||.|..|.+..... ||+|.|++...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 2 223456899999999999999999999999999877765544 99999999999999
Q ss_pred HHHHcCCcccccceee
Q 024221 162 AIKKLDDSEFRNAFSR 177 (270)
Q Consensus 162 a~~~l~g~~~~g~~~~ 177 (270)
|+..|-|..+++....
T Consensus 507 a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRR 522 (975)
T ss_pred hHHHHhcCcCCCCCcc
Confidence 9999999999986543
No 94
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=97.28 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
....|+|.|||+...+-||..+|.+||.|.+|.|+.+. .+|||||+|++.++|++|.++|||..+.|+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 45689999999999999999999999999999999885 5579999999999999999999999999944
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=80.69 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=64.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
-..-|||.|||+.+|.+++.++|.+||.|..|.+-..+ ..|.|||.|++..+|.+|+++|+|..+.+ .++.|-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEE
Confidence 34589999999999999999999999999999997554 55799999999999999999999999998 555554
No 96
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.8e-11 Score=92.03 Aligned_cols=81 Identities=26% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
......+|-|.||+.++++.+|+++|.+||.|..+++..++.+ |||||.|...++|.+|++.|||.-+++ ..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 3346678999999999999999999999999999999998755 599999999999999999999999987 77
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
++|++.++.
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 788877653
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.9e-11 Score=94.01 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=61.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.+++|+|+||++.+|+++|+++|+.||.|..|.|+.+.. +++|||+|+++++|+.|+. |+|..|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~ 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQR 72 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCce
Confidence 357999999999999999999999999999999998854 4599999999999999995 9999999843
No 98
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=98.85 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=68.7
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCC----EEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.++...|||..|.+-++.++|.-+|+.||.|..|.++.+..+| ||||+|++.+++++|.-+|++..|+. +.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ceE
Confidence 3577899999999999999999999999999999999998776 99999999999999999999999998 555
Q ss_pred eee
Q 024221 181 RVR 183 (270)
Q Consensus 181 ~~~ 183 (270)
.|+
T Consensus 312 HVD 314 (479)
T KOG0415|consen 312 HVD 314 (479)
T ss_pred Eee
Confidence 554
No 99
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1.8e-11 Score=101.82 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=66.6
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCH--HHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~--~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
....|||+||++.+++++|...|..||.|..|.|++....|||||+|... .++.+|+..|||..+.| ..++|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEee
Confidence 45799999999999999999999999999999999777788999999987 78999999999999999 5555553
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=5.2e-11 Score=76.13 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=59.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
+|+|.|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 48999999999999999999999999999888765 446999999999999999999999999883
No 101
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=97.03 Aligned_cols=78 Identities=31% Similarity=0.577 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHh-cCCcccCCceEEEEEc
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELA 80 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~i~v~~~ 80 (270)
.+...+||||++|...+++.+|+++|.+||+|..+.+. ..+++|||+|.+.+.|+.|... +|...|.|+.|.|.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 35677899999999999999999999999999999996 4567999999999999987665 6767889999999999
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=5.3e-11 Score=101.31 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=129.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
.....++|+++|+.++++.+..+|..- | .|..+.+. ..+++|||+|.+.+.|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 445679999999999999999999743 2 25555554 567899999999999999998 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCC----CCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--
Q 024221 72 GHRLRVELAHGGRGRSSSDRHS----SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-- 145 (270)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-- 145 (270)
|..+++.--....+.+...... .................++|++||..+++.++.++...||.+....+..+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9999886544333332221111 1111112223334567899999999999999999999999998887776644
Q ss_pred --CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 146 --GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 146 --~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
++|||.+|.++.....|+..|||+.+++..
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 569999999999999999999999999844
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=95.10 Aligned_cols=82 Identities=22% Similarity=0.482 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
+-+.|.|||.-||...++.+|.+.|-.||.|++.++.. |+.+++|+||.|.++.+|+.||..|||..|+=+.|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45789999999999999999999999999999999843 689999999999999999999999999999999999988
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
..+..
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 76533
No 104
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.24 E-value=3.9e-11 Score=89.10 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
....++|..||..+.+.+|..+|.+| |.|..+.+ ..||.++|||||+|++++.|.-|-+.||+..|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 78888888 569999999999999999999999999999999999999998
Q ss_pred cCC
Q 024221 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 105
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=88.46 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=61.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.-++|||++|++.+..+.|..+|.+||+|+.+.++.|+. +|||||+|.+.+.|.+|++ --+-.|+|+...+.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 456999999999999999999999999999999998854 4699999999999999998 444566775544433
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=3e-10 Score=72.28 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=56.7
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 113 v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
|.|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 578999999999999999999999999988754 56999999999999999999999999874
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=8e-10 Score=70.93 Aligned_cols=65 Identities=22% Similarity=0.422 Sum_probs=60.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
+|+|.|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|++.+++..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 478999999999999999999999999999998764 57999999999999999999999998884
No 108
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1.5e-10 Score=84.21 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-E---eecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-D---LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~-~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+..|||+||.+.+++..|...|+.||.+... + ...++.++|+|||.|.+.+.+.+|+..+||..+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34679999999999999999999999987652 2 2456889999999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 7544
No 109
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.10 E-value=4.4e-10 Score=87.65 Aligned_cols=79 Identities=27% Similarity=0.513 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
...|+|.|||+.|+++||++||+.||++..+.|.+ .|.+.|.|-|.|...++|..|+..+||..++|..|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46799999999999999999999999998888855 5888999999999999999999999999999999999887654
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 4
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.10 E-value=2.3e-09 Score=89.51 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=112.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEee--cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.-+|-+.+||+.||++||.+||+-.=.|.. |.+. .-+.+.|-|||+|++++.|++|+. -|...|.-+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999997744444 3332 346788999999999999999999 67778888888887554
Q ss_pred CCC--------------CCCCCC----CC-------------CCC---CCC-----------------------------
Q 024221 82 GGR--------------GRSSSD----RH-------------SSH---SSG----------------------------- 98 (270)
Q Consensus 82 ~~~--------------~~~~~~----~~-------------~~~---~~~----------------------------- 98 (270)
... +.+... .. ... ...
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 100 000000 00 000 000
Q ss_pred -----------CCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCCCEEEEEecCHHHHHHHHH
Q 024221 99 -----------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIK 164 (270)
Q Consensus 99 -----------~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~ 164 (270)
+...........++..+||+..+..+|..+|+..-.+ .|+|.-. ..++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0000000122568888999999999999999875544 4555443 455689999999999999987
Q ss_pred HcCCccccc
Q 024221 165 KLDDSEFRN 173 (270)
Q Consensus 165 ~l~g~~~~g 173 (270)
-++..+.+
T Consensus 340 -kd~anm~h 347 (510)
T KOG4211|consen 340 -KDGANMGH 347 (510)
T ss_pred -cCCcccCc
Confidence 34444544
No 111
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=1.2e-09 Score=92.62 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC---CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.+.|+|.+|...+...+|++||++||.|+..+|+.+ ...++|+||+|.+.++|.+||..||-+.|+|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 467999999999999999999999999999999543 34467999999999999999999999999999999999886
Q ss_pred CCC
Q 024221 83 GRG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 543
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=1.2e-09 Score=66.37 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=44.6
Q ss_pred HHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 125 l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
|.++|++||.|..+.+.... +++|||+|.+.++|..|+..|||..+.|+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 50 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRP 50 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 67899999999999998776 579999999999999999999999999943
No 113
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=7.2e-11 Score=96.41 Aligned_cols=143 Identities=24% Similarity=0.420 Sum_probs=115.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc-ccCCceEEEEEccCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-DFDGHRLRVELAHGG 83 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~i~v~~~~~~ 83 (270)
+.+|++||.+.++..+|..+|... |--..+.+. .|||||.+.++..|.+|++.|+|+ .+.|+.+.|.+.-..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999744 222222222 689999999999999999999994 578999999887643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEE-ecCCCCEEEEEecCHHHHHHH
Q 024221 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDGSGTTGIVDYTNYDDMKHA 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~-~~~~~~~~fv~f~~~~~a~~a 162 (270)
. .....+.|.|+|+...|+.|..++.+||.+..|... .+.......|+|...+.+..|
T Consensus 77 k---------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 K---------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred H---------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 3 223468899999999999999999999999877653 444444566889999999999
Q ss_pred HHHcCCcccccce
Q 024221 163 IKKLDDSEFRNAF 175 (270)
Q Consensus 163 ~~~l~g~~~~g~~ 175 (270)
+.+++|-.+.+..
T Consensus 136 i~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 136 IHKLNGPQLENQH 148 (584)
T ss_pred HHhhcchHhhhhh
Confidence 9999999988743
No 114
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=3.5e-11 Score=87.42 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=66.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
...-|||+|||+..|+.+|..+|++||.|..|.++.|..+ ||||+-|++.....-|+..|||..|.| +.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEe
Confidence 4468999999999999999999999999999999998654 599999999999999999999999999 55666
Q ss_pred ec
Q 024221 183 RE 184 (270)
Q Consensus 183 ~~ 184 (270)
+.
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 63
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.5e-10 Score=84.15 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=68.0
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
...+|||++|..++++..|...|-+||.|..|.++.| +..+||||+|+..++|..|++.||+.++.| +.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 3469999999999999999999999999999999877 455799999999999999999999999999 55555
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
-...+.
T Consensus 85 N~AkP~ 90 (298)
T KOG0111|consen 85 NLAKPE 90 (298)
T ss_pred eecCCc
Confidence 544443
No 116
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=3.2e-10 Score=95.93 Aligned_cols=165 Identities=19% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+-++.+|+|-|||..|+.++|..+|+.||+|..|.. +....|.+||+|.|..+|+.|++.||+..+.|+.|+......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 347889999999999999999999999999999654 446689999999999999999999999999999998211110
Q ss_pred CCCCCCCCCC--CCCCCCCC-CCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHH
Q 024221 83 GRGRSSSDRH--SSHSSGRG-RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (270)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a 159 (270)
.......... ........ ..+..-+...+++ .|++.....-+..++..+|.+..-....... --|++|.+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~h--q~~~~~~~~~s~ 226 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPGRETPLLNH--QRFVEFADNRSY 226 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCccccccccchhh--hhhhhhccccch
Confidence 0000000000 00000000 0000001112222 2888888877777778788765511111111 456777777777
Q ss_pred HHHHHHcCCccccc
Q 024221 160 KHAIKKLDDSEFRN 173 (270)
Q Consensus 160 ~~a~~~l~g~~~~g 173 (270)
..+...+ |..+.+
T Consensus 227 a~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 227 AFSEPRG-GFLISN 239 (549)
T ss_pred hhcccCC-ceecCC
Confidence 5554423 444444
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.4e-11 Score=106.24 Aligned_cols=134 Identities=24% Similarity=0.336 Sum_probs=112.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+..+++||.||++.+.+.+|...|..+|.+..+.+ ...+..+|+|||+|..++++.+|+.. +-..+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhhh-------
Confidence 34568999999999999999999999998877766 34678899999999999999999994 44444441
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCCCEEEEEecCHH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYD 157 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv~f~~~~ 157 (270)
..++|.|+|+..|.++|+.++..+|.+....++.. ..+|.|+|.|.+..
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 36789999999999999999999999988776544 45679999999999
Q ss_pred HHHHHHHHcCCccccc
Q 024221 158 DMKHAIKKLDDSEFRN 173 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g 173 (270)
+|..++..++...+.-
T Consensus 789 ~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhhcccchhhhhhh
Confidence 9999998887776654
No 118
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=93.64 Aligned_cols=78 Identities=27% Similarity=0.464 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC------CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
.++.|||+||++.++++.|...|..||+|..++|+++ .....++||.|-+-.+|+.|+..|||..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4678999999999999999999999999999999764 2456799999999999999999999999999999999
Q ss_pred EccC
Q 024221 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9963
No 119
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.94 E-value=1.5e-09 Score=84.99 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.+.|||+|+...+|.++|..+|+.||.|..+.|. ..++++|||||+|.+.+.++.|+. |||..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 577899999999999999999999999999877773 346789999999999999999999 9999999999999987
Q ss_pred cCC
Q 024221 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 643
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=3.2e-09 Score=90.04 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=69.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
..+||+|+|+++++++|.++|+..|.|..+.++.|..+ ||||++|.+.++|..|+..|||.++.| +.+++.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 79999999999999999999999999999999988654 599999999999999999999999999 6666666
Q ss_pred cccCCC
Q 024221 185 YDHRRD 190 (270)
Q Consensus 185 ~~~~~~ 190 (270)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 554433
No 121
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.92 E-value=1.9e-09 Score=87.55 Aligned_cols=82 Identities=26% Similarity=0.543 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+..|||++||.++++++|++.|++||.|..+.++. +...+||+||+|.+++.+.+++. +..+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 366899999999999999999999999998888865 36789999999999999999888 88899999999999988
Q ss_pred CCCCCC
Q 024221 82 GGRGRS 87 (270)
Q Consensus 82 ~~~~~~ 87 (270)
+.....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 665443
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=9.8e-09 Score=65.39 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHH----hcCCceEEE-EEec------CCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 122 WQDLKDHMR----RAGDVCFSQ-VFRD------GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 122 ~~~l~~~f~----~~g~i~~~~-~~~~------~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+++|.++|. +||.|..+. +..+ ...|+|||+|.+.++|..|+..|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 467778887 999999885 4433 23579999999999999999999999999954
No 123
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=83.50 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=66.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
..+|||+|||..+++++|.++|.+||.|..+.+..+. ..|+|||.|.+.++|..|+..++|..+.| ..+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 5899999999999999999999999999999998774 44699999999999999999999999999 555555
Q ss_pred cc
Q 024221 184 EY 185 (270)
Q Consensus 184 ~~ 185 (270)
..
T Consensus 191 ~~ 192 (306)
T COG0724 191 KA 192 (306)
T ss_pred cc
Confidence 53
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=2.1e-08 Score=67.10 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccC----CceEEE
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~i~v 77 (270)
+||.|.|||...|.++|.+++... |...-+.++. ++.+.|||||-|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999999743 5666666644 4677899999999999999999999998874 667788
Q ss_pred EEcc
Q 024221 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=5.1e-09 Score=88.25 Aligned_cols=75 Identities=32% Similarity=0.590 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee-c--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK-I--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~-~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
-.+|||.|||.++++.+|.++|..||+|+...|. . .+...+||||+|.+.+.++.|+. -+-..++++.|.|+--.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 3459999999999999999999999999998882 2 24445999999999999999999 66888999999998654
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.87 E-value=5.8e-09 Score=84.44 Aligned_cols=169 Identities=21% Similarity=0.256 Sum_probs=125.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCC-cccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~i~v~~~ 80 (270)
..+++|++++...+.+.++..+|..+|.+....+ .....++++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4678999999999999999999999998777766 2356789999999999999999999 555 4666666655544
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEE-ecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecC
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTN 155 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~ 155 (270)
......... ...........+++ |.+|+..++.++|..+|..+|.|..+.+...... ++|||.|.+
T Consensus 166 ~~~~~~~~n---------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGLRPKN---------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred ccccccccc---------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 432211100 00001112233455 9999999999999999999999999999888655 489999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
...+..++.. ....+.+ .++.+.+..+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~ 264 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG----RPLRLEEDEPR 264 (285)
T ss_pred chhHHHHhhc-ccCcccC----cccccccCCCC
Confidence 9999999886 7777776 44555554443
No 127
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.80 E-value=4.3e-08 Score=62.37 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~----l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..|+|.|||.+.+... |++|+..|| .|..|. .+.|+|.|.+++.|..|...|+|..+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999998877 556777775 676652 4799999999999999999999999999999999985
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 433
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=1.7e-07 Score=76.14 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=109.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee---EEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA---HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~---~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++..|-..+|||..++.+|-.||.-.--.. .+-+...+...|.|.|.|.++|.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 4666778899999999999999997442111 12223346667899999999999999998 6777788999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhc----CC---ceEEEEEecCCCCEEEEEe
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA----GD---VCFSQVFRDGSGTTGIVDY 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~----g~---i~~~~~~~~~~~~~~fv~f 153 (270)
.....-....... .....-........|-+.+||++++..++.++|..- |. |..|.-..+..+|-|||.|
T Consensus 137 ~ge~f~~iagg~s---~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAGGTS---NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecCCcc---ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 6543321111000 000011222234567788999999999999999621 22 3334444456678999999
Q ss_pred cCHHHHHHHHHHc
Q 024221 154 TNYDDMKHAIKKL 166 (270)
Q Consensus 154 ~~~~~a~~a~~~l 166 (270)
..+++|+.|+.+.
T Consensus 214 a~ee~aq~aL~kh 226 (508)
T KOG1365|consen 214 ACEEDAQFALRKH 226 (508)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999853
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.71 E-value=4e-09 Score=85.59 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
+||+|++|+..+-..++-++|..+|+|....+. .+....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA-SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 689999999999999999999999999877762 23335588899999999999999 7777766
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.69 E-value=9.5e-08 Score=83.13 Aligned_cols=173 Identities=13% Similarity=0.020 Sum_probs=118.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+++.|-+.+++.+..+.|++++|.-. .|..+.| .. .+...|.++|+|..+.++++|+. -|...+-++.++|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45666778999999999999999633 3444444 22 33447899999999999999998 77788889999887655
Q ss_pred CCCCCCCCCC------------CC---CCCC-----CCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceE-EEE
Q 024221 82 GGRGRSSSDR------------HS---SHSS-----GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 140 (270)
Q Consensus 82 ~~~~~~~~~~------------~~---~~~~-----~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~-~~~ 140 (270)
.......... .. .... +.....+......|||..||..++..++.++|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 3322111000 00 0000 0011122335679999999999999999999998877766 666
Q ss_pred EecC---CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 141 FRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 141 ~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
...+ ..+.|||.|.+++++..|..--+...++. ..|+|.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 5443 34589999999999888887555555554 455554
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=7.8e-08 Score=73.94 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=109.1
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 9 LYVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 9 v~v~nl~~~~t~~~-l--~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+++|+-..+..+- | ...|+.+-.+...++.. .+.-.+++|+.|.....-.++...-+++.+.-..|++ +...
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccc
Confidence 34555555544443 2 55666665555555533 3456789999999887777787777777777666544 3222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHH
Q 024221 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDM 159 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a 159 (270)
....+... .-......||-+.|..+++.+.|...|.+|-.-....++++. .+||+||.|.+..++
T Consensus 177 swedPsl~-----------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWEDPSLA-----------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCCcccc-----------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 21111111 112345789999999999999999999999988888888774 456999999999999
Q ss_pred HHHHHHcCCcccccce
Q 024221 160 KHAIKKLDDSEFRNAF 175 (270)
Q Consensus 160 ~~a~~~l~g~~~~g~~ 175 (270)
..|+..|+|+.++.++
T Consensus 246 ~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRP 261 (290)
T ss_pred HHHHHhhcccccccch
Confidence 9999999999999844
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.62 E-value=2.6e-07 Score=78.82 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=65.0
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC-C---EEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-T---TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~---~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
...+|+|.+|...+...+|+.+|++||+|+-+.++.+... | |+||+|.+.++|.++|+.||..++.| ..|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 4568999999999999999999999999999999988432 3 99999999999999999999999999 55665
Q ss_pred e
Q 024221 183 R 183 (270)
Q Consensus 183 ~ 183 (270)
.
T Consensus 480 E 480 (940)
T KOG4661|consen 480 E 480 (940)
T ss_pred e
Confidence 5
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.59 E-value=5.3e-08 Score=73.43 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
+...||||.||.++|||++|+++|+.|--...++|... .....||++|++.+.|..|+..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45578999999999999999999999977777777432 2356999999999999999999998665
No 134
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.58 E-value=2.5e-07 Score=71.45 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=53.6
Q ss_pred HHHHHHHh-hcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 21 REVEDLFY-KYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 21 ~~l~~~F~-~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
++|...|+ +||+|..+.| +...+..|.+||.|...++|++|+..|||.+|.|++|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45666666 9999999988 33457789999999999999999999999999999999998753
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.9e-07 Score=73.98 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=66.0
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc-CCcccccceeeeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRAYVR 181 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~ 181 (270)
++...-.+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++. +...|+| .++.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEE
Confidence 4445667999999999999999999999999999999887654 9999999999999888774 5556666 6677
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
+.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 777665
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=72.63 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=62.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
..+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|++..+|..|+..+|+.++.|. .+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce----eeeeeccc
Confidence 36899999999999999999999999999988766 999999999999999999999999994 35555544
No 137
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.52 E-value=2.7e-07 Score=63.29 Aligned_cols=70 Identities=19% Similarity=0.391 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC-----cccCCceEEEEE
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-----YDFDGHRLRVEL 79 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-----~~~~g~~i~v~~ 79 (270)
+.|+|.+++..++-++|+++|+.||+|..|.+. ..-..|||-|.+++.|+.|+..+.- ..+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec---CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578999999999999999999999999999986 3345999999999999999887543 345566655544
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=72.37 Aligned_cols=75 Identities=19% Similarity=0.412 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..-.||.|.|...++++.|-..|.+|-....-++ ..|++++||+||.|.++.++..|+.+|||..++.++|++.-
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3457999999999999999999999976655555 55899999999999999999999999999999999998753
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.49 E-value=6.1e-07 Score=70.26 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=63.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
..+.|+|.||++.++.++|+++|..||.+..+.+..+..+ +.|-|.|...++|..|+++++|..++|...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 3478999999999999999999999999999888888766 699999999999999999999999999653
No 140
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.49 E-value=7.9e-07 Score=67.55 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=60.1
Q ss_pred cEEEecCCCCCCCHHHHHH----HHHhcCCceEEEEEec-CCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 109 YRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~----~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.+|||.||+..+..++|+. +|++||.|..|..... +-.|-|||.|.+.+.|..|+..|+|..+-|++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 3999999999999998888 9999999998887744 56679999999999999999999999999943
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=2.2e-06 Score=72.57 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=60.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec----CCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
...|||.|||++++..+|+++|..||.|....|..- ....||||+|++..+++.|+.+- -..+++ ..+.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEE
Confidence 345999999999999999999999999988777643 33369999999999999999955 566666 566666
Q ss_pred ccccC
Q 024221 184 EYDHR 188 (270)
Q Consensus 184 ~~~~~ 188 (270)
+.+..
T Consensus 363 ek~~~ 367 (419)
T KOG0116|consen 363 EKRPG 367 (419)
T ss_pred ecccc
Confidence 65543
No 142
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.47 E-value=5.5e-07 Score=79.46 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=67.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
...+|||++|+..+++.+|..+|..||.|..|.++.. .++|||.+....+|.+|+.+|.+..+.+ ..|++.|.-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccc----eeeEEeeec
Confidence 4568999999999999999999999999999888655 4599999999999999999999988888 566666665
Q ss_pred cCCC
Q 024221 187 HRRD 190 (270)
Q Consensus 187 ~~~~ 190 (270)
..+-
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5443
No 143
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.46 E-value=8.7e-07 Score=66.30 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhc-CCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~-g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
+.......++|..+|..+.+.+|..+|.++ |.|..+.+.++. .++||||+|++.+.|+-|.+.||++.+.++...
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 333445689999999999999999999998 667777775654 456999999999999999999999999997655
Q ss_pred eeee
Q 024221 178 AYVR 181 (270)
Q Consensus 178 ~~i~ 181 (270)
+.+.
T Consensus 124 c~vm 127 (214)
T KOG4208|consen 124 CHVM 127 (214)
T ss_pred eEEe
Confidence 4443
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.39 E-value=3.5e-07 Score=73.97 Aligned_cols=80 Identities=31% Similarity=0.479 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
...+|||-+||..+++++|.++|.+||.|.. |+| +.|+.+++-|.|.|.+...|+.|+..++++.|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4678999999999999999999999997732 222 34788999999999999999999999999999999
Q ss_pred eEEEEEccCCC
Q 024221 74 RLRVELAHGGR 84 (270)
Q Consensus 74 ~i~v~~~~~~~ 84 (270)
.|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 145
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.35 E-value=4e-06 Score=67.53 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCC----CCC-------HHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPG----DIR-------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~----~~t-------~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+..+||.|.||-. ..+ .++|.+-.++||.|..|.| ++.++.|.+.|.|.+.+.|..|+..|+|.+|+|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-eccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 4678999999943 233 3445666889999999987 566788999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 024221 73 HRLRVELAHGG 83 (270)
Q Consensus 73 ~~i~v~~~~~~ 83 (270)
+.|...+..+.
T Consensus 342 Rql~A~i~DG~ 352 (382)
T KOG1548|consen 342 RQLTASIWDGK 352 (382)
T ss_pred eEEEEEEeCCc
Confidence 99999887643
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.31 E-value=2.3e-06 Score=50.86 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHH
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.+.++...+. |..+|..||+|..+.+. .....+||.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 4678999999888754 55589999999998875 44679999999999999985
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.30 E-value=2.8e-06 Score=74.48 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-------CCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 101 RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 101 ~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.....+..+++||+||++.++++.|...|..||.|..+.|+... ...+|||.|.+..+|+.|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 33445667899999999999999999999999999999998653 23499999999999999999999999987
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=5.3e-07 Score=67.96 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=62.0
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC--CEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
....+|||+|+...++++.|.++|-+.|.|..+.|..+... .||||.|+++-...-|++.+||..+.+..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccch
Confidence 34569999999999999999999999999999999876433 39999999999999999999998887643
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=2.3e-06 Score=73.11 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=60.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.+.-+|+|.|||..++.++|..+|..||+|..|..-.. ..+.+||+|.+..+|+.|++.|++.++.|..
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 34569999999999999999999999999998655444 3458999999999999999999999999853
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.18 E-value=5.8e-06 Score=66.35 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEeec-CC---CCCc--eEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 6 SRTLYVGNLPGDIREREV------EDLFYKYGPIAHIDLKI-PP---RPPG--YAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l------~~~F~~~G~v~~~~~~~-~~---~~~g--~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
.+-|||-+||+.+..+++ .++|.+||.|..|.|.. +. ...+ -.||+|.+.++|..|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999998877762 37999999999999843 21 1112 239999999999999999999999999
Q ss_pred eEEEEEcc
Q 024221 74 RLRVELAH 81 (270)
Q Consensus 74 ~i~v~~~~ 81 (270)
.|++.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 151
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.18 E-value=1.1e-05 Score=54.40 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee----------cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK----------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~----------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
..+.|.|-+.|+. ....|.++|++||+|.+..-. ......+...|+|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 5677899999998 557888999999999887510 012345789999999999999999 8999999876
Q ss_pred EE-EEEc
Q 024221 75 LR-VELA 80 (270)
Q Consensus 75 i~-v~~~ 80 (270)
|- |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 54 6665
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=3.6e-06 Score=57.75 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=40.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (270)
..|+|.+++..++.++|+++|++||.|.+|.+..+.. .|||-|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4688889999999999999999999999999887655 8999999999999999987554
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.14 E-value=1.4e-06 Score=67.29 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-----------CCCC----ceEEEEecCHHHHHHHHHhcCCcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----------PRPP----GYAFVEFEEARDAEDAIRGRDGYD 69 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
.+-.||+++||+.+...-|++||+.||.|-.|.|... +... .-|+|+|.+...|......|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999999331 1122 246799999999999999999999
Q ss_pred cCCce
Q 024221 70 FDGHR 74 (270)
Q Consensus 70 ~~g~~ 74 (270)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.08 E-value=4.4e-05 Score=51.18 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=54.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhc--CCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~--g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
++|.|.|+|...+.++|.+++... |....+.++.|- +.|||||.|.+++.|..-.+.++|.....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 589999999999999999988753 455666676663 34799999999999999999999998875
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.03 E-value=7.6e-06 Score=67.77 Aligned_cols=74 Identities=28% Similarity=0.289 Sum_probs=59.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCC----------------CCCceEEEEecCHHHHHHHHHhcCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------------RPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
-+++||.+.|||.+-.-+.|.+||..||.|..|.|-.++ ..+-+|||+|.+.+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 378999999999999999999999999999999993321 1256899999999999999997765
Q ss_pred cccCCceEEE
Q 024221 68 YDFDGHRLRV 77 (270)
Q Consensus 68 ~~~~g~~i~v 77 (270)
..-.-.-|+|
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 4433333333
No 156
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.01 E-value=3.3e-05 Score=67.85 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=64.7
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPI-AHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~-~v~v~nl~~~~t~~~l~~~F~~~G~v-~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.+.+ +|-+.|+|.+++-+||.+||.-|-.+ .+|.+ ..+|...|-|.|.|++.+.|..|...|+++.|..+.|.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4445 78899999999999999999999544 23333 44688899999999999999999999999999999998864
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.98 E-value=7.4e-06 Score=66.05 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=62.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
-++|||||-|.+|++||.+.+...| .+.++++ ..+|+++|||+|...+...+++.++.|-.+.|+|+.-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4689999999999999999988776 4555555 2368999999999999999999999999999999877765433
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.1e-05 Score=67.37 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceE
Q 024221 5 ASRTLYVGNLPGDIR------EREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRL 75 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t------~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i 75 (270)
-..+|+|.|+|---. ...|..+|+++|+|..+.++. .|..+||+|++|.++.+|+.|++.|||..|+ ...+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 356789999986422 223668999999999999864 3668999999999999999999999998886 5566
Q ss_pred EEEEcc
Q 024221 76 RVELAH 81 (270)
Q Consensus 76 ~v~~~~ 81 (270)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 665544
No 159
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.97 E-value=6.2e-06 Score=70.93 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc---CCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~i~v~~ 79 (270)
.+++.|+|.||-.-+|..+|++|+. .+|.|.+.+|- +-+..|||.|.+.++|......|||..+ +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 77888888662 2356999999999999999999999877 577888888
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 76
No 160
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.96 E-value=6.4e-05 Score=59.14 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=61.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
.....++|+|+.+.+|.+++..+|..||.|..+.+..+.. ++|+||+|.+.+.++.|+. |||..+.|..+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 3456899999999999999999999999998888877643 4599999999999999999 99999999543
No 161
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.96 E-value=7.9e-05 Score=47.71 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=44.9
Q ss_pred cEEEecCCCCCCCHHHH----HHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 109 YRVLVTGLPSSASWQDL----KDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l----~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
..|+|.|||.+.....| ++++..+| .|..|. ++.|.|.|.+++.|..|.+.|+|..+-| ..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 47999999999886654 55666777 555542 4589999999999999999999999999 555555
Q ss_pred ccc
Q 024221 184 EYD 186 (270)
Q Consensus 184 ~~~ 186 (270)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 443
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.92 E-value=7.4e-05 Score=53.52 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCCCeEEEcCCC-----CCCCHH----HHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 4 RASRTLYVGNLP-----GDIRER----EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 4 ~~~~~v~v~nl~-----~~~t~~----~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
-|.-||.|.=+. ...-++ +|.+.|..||+|.=+++. -+.-+|+|.+-++|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 355677775554 122233 577889999999988886 3577999999999999999 9999999999
Q ss_pred EEEEEccC
Q 024221 75 LRVELAHG 82 (270)
Q Consensus 75 i~v~~~~~ 82 (270)
|+|.+-.+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987653
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.91 E-value=8.3e-06 Score=66.27 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=69.4
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~-v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.++-++| |+||+.++++++|+.+|..+|.|..+.+. .++..+|+|||.|.+...+..|+.. +...+.+.++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3555666 99999999999999999999999999993 3678899999999999999999986 88899999999988
Q ss_pred ccCC
Q 024221 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 7643
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=4e-05 Score=59.46 Aligned_cols=101 Identities=27% Similarity=0.266 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCce
Q 024221 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (270)
Q Consensus 57 ~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~ 136 (270)
-|..|...|++....|+.|.|.|+.. ..|+|.||..-+.-+.|.+.|..||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 46677788999999999999999853 4899999999999999999999999997
Q ss_pred EEEEEec---CCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 137 FSQVFRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 137 ~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
...+..| ...+-++|.|.....|.+|+..+...-+.+.......-|.
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7655544 3345889999999999999998877666665544555554
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.6e-05 Score=63.89 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEeecC---CCCCceEEEEecCHHHHHHHHH
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~ 63 (270)
++.+|||||+||.-++.++|..+|+ .||-|..+-|-.+ +-++|-|=|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 5889999999999999999999999 9999999988554 4578999999999999999998
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.75 E-value=8.7e-05 Score=58.65 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=57.1
Q ss_pred CCCeEEEcCC--CCCCC---HHHHHHHHhhcCCeeEEEeec-C---CCCCceEEEEecCHHHHHHHHHhcCCcccCCceE
Q 024221 5 ASRTLYVGNL--PGDIR---EREVEDLFYKYGPIAHIDLKI-P---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (270)
Q Consensus 5 ~~~~v~v~nl--~~~~t---~~~l~~~F~~~G~v~~~~~~~-~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i 75 (270)
+++.|.+.|+ +-.+. ++++.+..++||.|..|.|.. . ..-.--.||+|...++|.+|+-.|||..|+|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444555554 22333 456788899999999988833 2 2223468999999999999999999999999999
Q ss_pred EEEEcc
Q 024221 76 RVELAH 81 (270)
Q Consensus 76 ~v~~~~ 81 (270)
...|-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887654
No 167
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=7.9e-05 Score=67.37 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC--CceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~~ 80 (270)
..+++.++|++|.+.+....|...|..||.|..|.+. +...||||.|++...|+.|++.|-|..|+ .+.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 3578899999999999999999999999999999885 55679999999999999999999999997 467899998
Q ss_pred cCCCCC
Q 024221 81 HGGRGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 529 ~~~~~~ 534 (975)
T KOG0112|consen 529 SPPGAT 534 (975)
T ss_pred cCCCCC
Confidence 865543
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.00014 Score=43.12 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=40.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHH
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 163 (270)
..|.|.+.++.... .+...|..||+|..+.+.. .....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 46778888876654 4555889999999988872 2348999999999999985
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.66 E-value=0.00011 Score=57.13 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHHHH-hcCCceEEEEEec---CCCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 123 QDLKDHMR-RAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 123 ~~l~~~f~-~~g~i~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
++|...|. +||+|+.+.+-.+ .-.|.+||.|...++|+.|++.||+..+.|+++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 44555555 8999988766544 33468999999999999999999999999976543
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.52 E-value=6.5e-05 Score=58.28 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=59.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---------C-------EEEEEecCHHHHHHHHHHcCCccc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---------~-------~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
.-.||+.++|+.+....|+++|..||.|-.|.+...... + -|+|+|.....|......||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999999765322 1 389999999999999999999999
Q ss_pred ccce
Q 024221 172 RNAF 175 (270)
Q Consensus 172 ~g~~ 175 (270)
+|..
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9853
No 171
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.00019 Score=64.64 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
...|+|.|+|+..|.++|+.++..+|.+.++.+ ...|+++|.|||.|.++.+|..++...++..+.-+.+.|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 456899999999999999999999999999987 567899999999999999999999999988888888888886653
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 816 ~ 816 (881)
T KOG0128|consen 816 R 816 (881)
T ss_pred c
Confidence 3
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.41 E-value=0.0011 Score=42.58 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
...+|+ +|......||.++|..||.|.--.|. -..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 345554 99999999999999999999866664 3589999999999999998775
No 173
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.37 E-value=0.0018 Score=45.89 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=57.5
Q ss_pred CCCCeEEEcCCCCCCCH----HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
-|-.||.|.=|..++.. ..|...++.||+|..|.+- ++..|.|.|.+..+|..|+..++. ...|..+++.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 45568888877666533 3366677899999999873 356999999999999999998775 67788899888
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 64
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.29 E-value=0.0025 Score=43.92 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeecCCC-CCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
..+..+.+...|+-++.++|..+.+.+- .|..++|..++. ++-.++|.|.++++|...+..+||+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455566666666677777776666664 567777877665 4557888999999999999999999885
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.26 E-value=0.0011 Score=53.60 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=59.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHH------HHHHHhcCCceEEEEEecCCC-----C--EEEEEecCHHHHHHHHHHcCCc
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDL------KDHMRRAGDVCFSQVFRDGSG-----T--TGIVDYTNYDDMKHAIKKLDDS 169 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l------~~~f~~~g~i~~~~~~~~~~~-----~--~~fv~f~~~~~a~~a~~~l~g~ 169 (270)
.......-+||.+|++.+..+++ .++|.+||.|..|.+.+.... + -.||+|...++|..++.+.+|.
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 34445667999999999876662 579999999999888655311 1 3499999999999999999999
Q ss_pred ccccceee
Q 024221 170 EFRNAFSR 177 (270)
Q Consensus 170 ~~~g~~~~ 177 (270)
.++|+...
T Consensus 189 ~~DGr~lk 196 (480)
T COG5175 189 LLDGRVLK 196 (480)
T ss_pred cccCceEe
Confidence 99996543
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.0012 Score=44.69 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEE-----------EEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-----------VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~-----------~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
....|.|.+.|+. ....|.+.|++||.|.... ......+....|.|.++.+|.+|+. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 3457888898888 6677889999999997764 0111233488999999999999999 899999884
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.12 E-value=0.0033 Score=52.99 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEeecCCCCC-ceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRPP-GYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
+++.|+|-.+|..+|.-||..|...| -.|.+|++..++.+. -.++|.|.+.++|...+..+||+.|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 47899999999999999999999855 468889987776554 46789999999999999999999985
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0022 Score=55.46 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=54.5
Q ss_pred ccEEEecCCCCCCC------HHHHHHHHHhcCCceEEEEEecCCC---CEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 108 EYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 108 ~~~~~v~~l~~~~t------~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
...|+|.|+|---. ...|..+|+++|++..+.++.+..+ ||.|++|++..+|+.|++.|||+.+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 35788888775332 3456789999999999999866544 5999999999999999999999999754
No 179
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.05 E-value=0.00068 Score=55.35 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=58.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceE--------EEEEec----CCCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~--------~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
....+|||.+|+..++..+|.++|.++|.|.. |++.++ ..++-|.|.|+++..|+.|+.-++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34568999999999999999999999997743 344444 345689999999999999999999999998
Q ss_pred c
Q 024221 174 A 174 (270)
Q Consensus 174 ~ 174 (270)
.
T Consensus 144 n 144 (351)
T KOG1995|consen 144 N 144 (351)
T ss_pred C
Confidence 3
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.01 E-value=0.0026 Score=50.54 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCceEEEEEecCCC-----CEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 122 WQDLKDHMRRAGDVCFSQVFRDGSG-----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~~~-----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
+.++.+.+.+||.|..|.|...+.. .--||+|+..++|.+|+-.|||..|+|+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 4577889999999999888776432 2679999999999999999999999996543
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.00 E-value=0.0057 Score=39.12 Aligned_cols=66 Identities=27% Similarity=0.503 Sum_probs=40.9
Q ss_pred eEEEcCC--CCCCCHHHHHHHHhhcC-----CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 8 TLYVGNL--PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 8 ~v~v~nl--~~~~t~~~l~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
++|| |+ -..+++.+|..++...+ .|-.|.+. ..|+||+-.. +.|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566 44 34589999999998775 45566665 4699999987 5889999999999999999999875
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.92 E-value=0.0043 Score=47.07 Aligned_cols=64 Identities=28% Similarity=0.346 Sum_probs=47.8
Q ss_pred CCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC--CcccCCceEEEEEccCCC
Q 024221 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~~~~~~ 84 (270)
-..+.|.++|..|+++..+.+. .+-+-..|.|.+.++|..|...|+ +..|.|..|+|.++....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3457899999999999888876 445688999999999999999999 999999999999985433
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.83 E-value=0.012 Score=35.78 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=41.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
...|+|.++ .+++.++|+.+|..| ++. .|....+ ..|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 457999998 458889999999988 443 3333322 37889999999999999754
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.82 E-value=0.00076 Score=56.99 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~-t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+..+.|-+.-+|..+ |-++|-..|.+||+|..|.+-+. .-.|.|+|.+..+|-.|+. .++..|+++.|+|.|.+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 456667777777764 66789999999999999998543 4588999999999999988 899999999999999875
No 185
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.0019 Score=54.00 Aligned_cols=65 Identities=14% Similarity=0.292 Sum_probs=54.9
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec---CC--------------CCEEEEEecCHHHHHHHHHHc
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GS--------------GTTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~---~~--------------~~~~fv~f~~~~~a~~a~~~l 166 (270)
+..+..+|.+.|||.+-.-+.|.++|..+|.|..|.|... +. .-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3346779999999999988999999999999999999765 11 127999999999999999987
Q ss_pred CC
Q 024221 167 DD 168 (270)
Q Consensus 167 ~g 168 (270)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.80 E-value=0.0052 Score=39.50 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=42.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCC
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (270)
....+|. .|..+-..+|.++|+.||.|.--.|... .|||...+.+.|..++..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 3455555 9999999999999999999876655433 899999999999999988764
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.74 E-value=0.0015 Score=49.35 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEeecC-----CCCCceEEEEecCHHHHHHHHHhcCCcccC---C
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFD---G 72 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~-~G~v---~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 72 (270)
....|.|.+||+++|++++.+.+.. ++.. ..+.-..+ .....-|||.|.+.+++......++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 5568999999999999999997776 6666 33331111 122458999999999999999999997773 2
Q ss_pred c--eEEEEEccCCC
Q 024221 73 H--RLRVELAHGGR 84 (270)
Q Consensus 73 ~--~i~v~~~~~~~ 84 (270)
. ...|++|....
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 2 45677776644
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.72 E-value=0.0019 Score=56.19 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=53.0
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhc-CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (270)
.....|+|.||---+|.-+|++++... |.|...+|..-+ ..|||.|.+.++|......|||....
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC
Confidence 356789999999999999999999854 456666443333 38999999999999999999997664
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.70 E-value=0.001 Score=58.50 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+.-+|||+||...+..+-+..+...||-|..++... |+|+.|.....+..|+..|+-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 567899999999999999999999999999887752 9999999999999999999988999998887664
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.70 E-value=0.0022 Score=55.35 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh--hcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC--cccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~--~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~ 79 (270)
..-|.|+|.-||..+..++|+.||. .|-++++|.+-. ..-=||+|++..||+.|+..|.. +.|.|++|...+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3457899999999999999999997 578899998832 12459999999999999988765 567788776544
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0082 Score=48.05 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=53.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceE-EEEEc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL-RVELA 80 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i-~v~~~ 80 (270)
.=|.|-++|+.-. .-|..+|++||+|...... ..-.+-+|.|.+.-+|.+||. .||+.|+|..+ =|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 4467777777654 4577899999999877554 334689999999999999999 89999987754 45543
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.58 E-value=0.025 Score=34.41 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhc---CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (270)
..|+|.|+. +++.++|+.+|..| .....|..+.|. .|.|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 588999985 57889999999998 234566666664 5889999999999999865
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.37 E-value=0.019 Score=41.38 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 123 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.+|.+.|..||.+.-+.+..+ .-+|+|.+-..|.+|+. ++|..++|+..+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 467888899999998888776 67999999999999999 9999999955443
No 194
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.21 E-value=0.0089 Score=48.50 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=13.9
Q ss_pred CCCceEEEEecCHHHHHHHHHhcCC
Q 024221 43 RPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 43 ~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
..+.-.||-|....-|..++. |-+
T Consensus 171 slRT~v~vry~pe~iACaciy-LaA 194 (367)
T KOG0835|consen 171 SLRTDVFVRYSPESIACACIY-LAA 194 (367)
T ss_pred ccccceeeecCHHHHHHHHHH-HHH
Confidence 345567777776555555554 443
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.20 E-value=0.0019 Score=52.50 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEeecCC------CCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
+-+||-+|+..+-.+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888887665554 588999999999885432 11235899999999999999999999999999777
Q ss_pred EEcc
Q 024221 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6554
No 196
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=96.17 E-value=0.0025 Score=51.50 Aligned_cols=12 Identities=0% Similarity=0.221 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcC
Q 024221 122 WQDLKDHMRRAG 133 (270)
Q Consensus 122 ~~~l~~~f~~~g 133 (270)
+.+|.+-|.++-
T Consensus 226 qkqId~~ie~r~ 237 (453)
T KOG2888|consen 226 QKQIDEKIEERK 237 (453)
T ss_pred HHHHHHHHHhcc
Confidence 445555555443
No 197
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.008 Score=47.03 Aligned_cols=75 Identities=28% Similarity=0.370 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCccc----CCceEEEEEc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF----DGHRLRVELA 80 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~i~v~~~ 80 (270)
..|||.||+..+.-+.|.+-|..||+|..-.+ ...++..+-++|+|...-.|.+|+..++-.-| .+.+.-|..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999976555 33577788999999999999999987743333 3555555544
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.92 E-value=0.049 Score=33.72 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.++.++|+..+..|+- ..|... ..|| ||.|.+.++|++++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999964 334443 2345 89999999999999999999888777664
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.81 E-value=0.0082 Score=51.00 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=53.3
Q ss_pred cEEEecCCCCCC-CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 109 YRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 109 ~~~~v~~l~~~~-t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
..+.+...+... +..+|...|.+||.|..|.+-.. ..-|.|+|.+..+|-+|.. .++..|++ ..|.+.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecC----ceeEEEEecC
Confidence 344444455554 67899999999999999988766 2368999999999977765 78888888 4555554433
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.54 E-value=0.47 Score=38.29 Aligned_cols=162 Identities=12% Similarity=0.166 Sum_probs=96.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCC----------CCCceEEEEecCHHHHHHHHHh----cCC--cc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RDG--YD 69 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~A~~~----l~g--~~ 69 (270)
++.|.+.||..+++--.+...|-+||+|..|.+.... .....+.+.|-+.+.|...+.. |+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999995433 3346888999999988766543 222 34
Q ss_pred cCCceEEEEEccCCCCCCCC-CCCCCCC-----CCCC-CCCCCCcccEEEecCCCCCCCHHH-HHH---HHHhcCC----
Q 024221 70 FDGHRLRVELAHGGRGRSSS-DRHSSHS-----SGRG-RGVSRRSEYRVLVTGLPSSASWQD-LKD---HMRRAGD---- 134 (270)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~-~~~~~~~-----~~~~-~~~~~~~~~~~~v~~l~~~~t~~~-l~~---~f~~~g~---- 134 (270)
+.-..|.|.+..-.-..... ....... ..-. ..........|.|.= ...+..++ +.+ ++..-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 66777877776531111110 0000000 0000 111112223344432 23332332 222 2233332
Q ss_pred ceEEEEEecC------CCCEEEEEecCHHHHHHHHHHcCC
Q 024221 135 VCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDD 168 (270)
Q Consensus 135 i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g 168 (270)
++.|.++... +..||.+.|-+..-|.+.++.+.-
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 4566776542 224999999999999999987763
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.36 E-value=0.3 Score=33.75 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=48.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCC--EEEEEecCHHHHHHHHHHcCCccccc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
..+.+...|+.++..+|..+...+- .|..+.+.++.... .+.+.|.+..+|.+-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555555566667766666555 56678888886544 78899999999999999999999975
No 202
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.095 Score=45.95 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEeecC-------------CC---------------------
Q 024221 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~-~t~~~l~~~F~~~----G~v~~~~~~~~-------------~~--------------------- 43 (270)
+-+++.|-|.||.|. +...+|..+|..| |.|..|.|..+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 457889999999997 8999999999977 58888888331 11
Q ss_pred ----------------CCceEEEEecCHHHHHHHHHhcCCcccC--CceEEEEEcc
Q 024221 44 ----------------PPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (270)
Q Consensus 44 ----------------~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~~~ 81 (270)
.--||.|+|.+.+.|...+..|+|..|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0128899999999999999999999997 5555555544
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.087 Score=45.96 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHh--c
Q 024221 55 ARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR--A 132 (270)
Q Consensus 55 ~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~--~ 132 (270)
.+-...++....+..++.+-++|.... .-+.|++..||..+-.++++.+|+. +
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~-------------------------kRcIvilREIpettp~e~Vk~lf~~enc 201 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNH-------------------------KRCIVILREIPETTPIEVVKALFKGENC 201 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCc-------------------------ceeEEEEeecCCCChHHHHHHHhccCCC
Confidence 333445666666777777766664332 3457888999999999999999975 6
Q ss_pred CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC
Q 024221 133 GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (270)
Q Consensus 133 g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (270)
-+++.|.+..+. .=||+|++..||+.|...|.
T Consensus 202 Pk~iscefa~N~---nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 202 PKVISCEFAHND---NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CCceeeeeeecC---ceEEEeecchhHHHHHHHHH
Confidence 677888776654 35899999999999987753
No 204
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.87 E-value=0.032 Score=45.69 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=56.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcC--CceEEEEEec----CCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g--~i~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
....+||+||-+.+|.++|.+.+...| .+..+++..+ ..+|||+|........++.++.|-.++|.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 446899999999999999999998877 3445555544 3457999999999999999999999999884
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.048 Score=41.24 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=47.0
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHh-cCCc---eEEEEEecCCC------CEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~-~g~i---~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
....|.|.+||+.+|++++.+.+.. ++.. .++........ .-|||.|.+.+++..-...++|..+-+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999887776 6655 23331122111 269999999999999999999988765443
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.44 E-value=0.03 Score=51.07 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc--CCceEEEEEccCCC
Q 024221 13 NLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVELAHGGR 84 (270)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~i~v~~~~~~~ 84 (270)
|.+-+.+-.-|-.+|..||.|.+.+.. ..-..|.|+|...+.|..|+..|+|+.+ -|-+.+|.+++...
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtl---r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTL---RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheec---ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 333456677788999999999999874 3356899999999999999999999886 48889999887443
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.33 E-value=0.068 Score=35.13 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=45.2
Q ss_pred EEEEecCHHHHHHHHHhc-CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHH
Q 024221 48 AFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~ 126 (270)
|+|+|.++.-|+..+..- +...+++..+.|............ ..-....+..+|.|.|||....++.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k----------~qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK----------FQVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE----------EEEEEcccCCEEEEeCCCCCCChhhhe
Confidence 689999999999888732 223456666666654322211000 000122345689999999999999887
Q ss_pred HHH
Q 024221 127 DHM 129 (270)
Q Consensus 127 ~~f 129 (270)
+.+
T Consensus 71 D~L 73 (88)
T PF07292_consen 71 DKL 73 (88)
T ss_pred eeE
Confidence 754
No 208
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.31 E-value=0.0016 Score=54.41 Aligned_cols=78 Identities=17% Similarity=0.332 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
-++.+.|.|||+...++.|-.|+..||.|..|....+.......-|+|...+.+..|+..|||..|....++|.|...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 356688999999999999999999999999998855544444556889999999999999999999999999988664
No 209
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=93.93 E-value=0.13 Score=42.08 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHH
Q 024221 119 SASWQDLKDHMR 130 (270)
Q Consensus 119 ~~t~~~l~~~f~ 130 (270)
++++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 456666666554
No 210
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.90 E-value=0.41 Score=35.74 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHH-----HHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc-eEEEE
Q 024221 5 ASRTLYVGNLPGDIRER-----EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~-----~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~i~v~ 78 (270)
-.+++++.+|...+-.+ ....+|.+|-+.....+. .+.+..-|.|.+++.|..|..++++..|.|. .++..
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34668888887764222 234566666555555444 4456778999999999999999999999988 89998
Q ss_pred EccCCCC
Q 024221 79 LAHGGRG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 8875543
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.87 E-value=0.33 Score=41.45 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=58.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCC--EEEEEecCHHHHHHHHHHcCCccccc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
...|+|-.+|..++-.+|..++..+- .|..+.++++..+. .+.|.|.+..+|..-.+.+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998766 67889999875544 78999999999999999999999975
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=0.53 Score=38.10 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=54.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
+.-|-|.++++... ..|..+|.+||.|...... .++.+-+|.|....+|.+|+. .||+.|+|. ..|-|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~---vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD---VMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc---eEEeeeec
Confidence 55677778877644 4567889999999876555 555689999999999999999 789999885 44555543
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.41 E-value=0.09 Score=38.70 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=76.8
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhhc-CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 024221 9 LYVGNL-P-GDIREREVEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (270)
Q Consensus 9 v~v~nl-~-~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~ 85 (270)
..|+.+ . ...+...|.+.+... +....+.+.. ...++..+.|.+++++..++. .....+.|..|.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 344555 2 346677777766642 4333444421 125799999999999999888 555667787777766543221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCC-CHHHHHHHHHhcCCceEEEEEecC
Q 024221 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDG 144 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-t~~~l~~~f~~~g~i~~~~~~~~~ 144 (270)
.... .......-|.|.|||... +++-|..+.+..|.+..++.....
T Consensus 95 ~~~~-------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV-------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc-------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1100 011123457788999984 788889999999999888776553
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.79 E-value=0.072 Score=43.59 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred cccEEEecCCCCCCCHHHHH---HHHHhcCCceEEEEEecCC--C---C--EEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 107 SEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS--G---T--TGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~---~~f~~~g~i~~~~~~~~~~--~---~--~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
...-+||.+|+..+..+.+. +.|.+||.|..|.+..+.. . + .++|+|+..++|..|+...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 33567888888887655553 4788999999998887652 1 1 6899999999999999999999888854
No 215
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.92 E-value=0.79 Score=32.91 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=44.4
Q ss_pred cccEEEecCCCCCC----CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcc
Q 024221 107 SEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (270)
Q Consensus 107 ~~~~~~v~~l~~~~----t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (270)
+..+|.|.=|..++ +...+...++.||.|..|...-- ..|.|.|++...|-.|+.++....
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcCCC
Confidence 44577776544443 44556667789999988866432 379999999999999999887743
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.96 E-value=0.65 Score=41.67 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=56.3
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.++..++||+|+...+..+-++.+...+|-|..+.... |||..|....-+..|+..++...++|.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34567999999999999999999999999887765544 899999999999999999888888764
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.76 E-value=2 Score=32.78 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC--Ccccccceee
Q 024221 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSR 177 (270)
Q Consensus 121 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~ 177 (270)
..+.|.++|..++.+........-. -..|.|.+.+.|..|...|+ +..+.|....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 5688999999999887665555432 57899999999999999999 8999985433
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.10 E-value=0.36 Score=44.52 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc
Q 024221 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (270)
Q Consensus 113 v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (270)
+.|.+-..+..-|..+|.+||.|..++...+-. .|.|+|...+.|..|++.++|+++-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 344455567778899999999999999977755 7999999999999999999999874
No 219
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=85.73 E-value=5.1 Score=35.98 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCCCcccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEec
Q 024221 101 RGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 143 (270)
Q Consensus 101 ~~~~~~~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~ 143 (270)
.+.-+.....+.|.+++.+ ++...-.+.+.++|++..|.+...
T Consensus 54 eG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 54 EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred ccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 3455556678889888875 555666677788998888777554
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.36 E-value=0.76 Score=32.13 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=30.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHH-HHHH
Q 024221 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAE-DAIR 63 (270)
Q Consensus 8 ~v~v~nl~~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~-~A~~ 63 (270)
++.|-|++.. ++-+.|.+.|..|.++.-..+.......|+++|+|...-..- .|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4566788553 466789999999998875555434456789999997654443 3544
No 221
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=83.44 E-value=3.1 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.8
Q ss_pred HHHHHHHhhcCCeeEEEee
Q 024221 21 REVEDLFYKYGPIAHIDLK 39 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~ 39 (270)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999988873
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.56 E-value=3.1 Score=35.23 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHh
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
...|-|.++|.....+||...|+.|+.- .++|++-. ...||-.|.....|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEee--cceeEEeecchHHHHHHhhc
Confidence 4578899999999999999999999742 23332211 24899999999999999983
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.46 E-value=8.5 Score=25.14 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.|+-.++..++..+|++.++.+ | .|..|.........--|||.+.....|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444688999999999999964 4 4566655444445568999999988888765543
No 224
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=80.93 E-value=1.6 Score=36.73 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=49.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-C-----CCCCceEEEEecCHHHHHHHHHhcCCccc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-P-----PRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
.-+.|.|.+||+.+++.+|.+-+..|-+-....... . .+..+.|||-|..++++......++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346788999999999999998888765433222211 1 23357899999999999888888888665
No 225
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.85 E-value=8.3 Score=32.86 Aligned_cols=80 Identities=18% Similarity=0.371 Sum_probs=59.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEeecC-------------CC--------------------
Q 024221 2 SSRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR-------------------- 43 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~-~t~~~l~~~F~~~----G~v~~~~~~~~-------------~~-------------------- 43 (270)
++.+++.|-|-||.|. +...+|..+|+.| |+|..|.|..+ |.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3578899999999996 8999999999876 56776766211 10
Q ss_pred ----------------CC-------------------ceEEEEecCHHHHHHHHHhcCCcccC--CceEEEEEcc
Q 024221 44 ----------------PP-------------------GYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (270)
Q Consensus 44 ----------------~~-------------------g~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~~~ 81 (270)
-. -||.|++.+.+.+...+..++|..+. +..+-+.|..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 01 17889999999999999999998886 4444454443
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=79.56 E-value=13 Score=24.34 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=43.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCC-CEEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 166 (270)
+.|+..++..++..+|++.+.. || .|..|....-+.+ .-|||.+....+|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4555566888999999999976 66 6777777666544 37999999998888876654
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=79.54 E-value=13 Score=23.81 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=42.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCC-CEEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 166 (270)
.-|+..++..++..+|+..+.. || .|..|....-+.. .-|||.+..-..|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566667889999999999976 56 6677766655544 27999999888888776654
No 228
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=79.14 E-value=4.6 Score=33.81 Aligned_cols=56 Identities=21% Similarity=0.171 Sum_probs=39.2
Q ss_pred EEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHH
Q 024221 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~ 127 (270)
|||+|.++.+|..|.+.+.... +..+.|..|.+ ...|...||.....+..++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe-------------------------P~DI~W~NL~~~~~~r~~R~ 53 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE-------------------------PDDIIWENLSISSKQRFLRR 53 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC-------------------------cccccccccCCChHHHHHHH
Confidence 7999999999999999654433 35557766643 23677888877666666665
Q ss_pred HHH
Q 024221 128 HMR 130 (270)
Q Consensus 128 ~f~ 130 (270)
.+.
T Consensus 54 ~~~ 56 (325)
T PF02714_consen 54 IIV 56 (325)
T ss_pred HHH
Confidence 444
No 229
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.03 E-value=11 Score=23.79 Aligned_cols=53 Identities=8% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhcCCc-----eEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 118 SSASWQDLKDHMRRAGDV-----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 118 ~~~t~~~l~~~f~~~g~i-----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
..++..+|..++...+.+ -.+.+... |+||+-.. +.|..++..|++..+.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk~ 68 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGKK 68 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS--
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCee
Confidence 357888999999877544 45666655 88887664 4788899999999999844
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.23 E-value=4.1 Score=32.85 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCH
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
.+-|+|+||+.++...||+..+.+.|-+ -+.+-+.| +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec-CCcceeEecCCc
Confidence 3559999999999999999999877643 23333333 367999999764
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.03 E-value=0.33 Score=42.49 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC---CCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
-+|+|||.||+++++..+|..++..+--+..+.+-.. .....+++|+|.---....|+..||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4688999999999999999999988755555544211 2234578899988777888888888876643
No 232
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=75.78 E-value=7.5 Score=25.51 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEec
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
...-|||+|++..+-+.-...+.+..++-.-+-+..+....||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3456999999999887666666665655555555445557899998873
No 233
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=75.41 E-value=1.2 Score=41.23 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=5.4
Q ss_pred ccEEEecCCC
Q 024221 108 EYRVLVTGLP 117 (270)
Q Consensus 108 ~~~~~v~~l~ 117 (270)
....|++++.
T Consensus 145 ~qR~f~gvvt 154 (1194)
T KOG4246|consen 145 PQRRFAGVVT 154 (1194)
T ss_pred cceeeehhhh
Confidence 3456666543
No 234
>PF14893 PNMA: PNMA
Probab=70.51 E-value=6.2 Score=33.14 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=44.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEe----ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDL----KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~-~G~v~~~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
-++-+.|.|.+||.+|++++|.+.+.. +-++-...| ........-|+|+|...-+-...=..+. -.|...+|
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~---g~gg~W~V 91 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIP---GKGGPWRV 91 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcC---CCCCceEE
Confidence 356788999999999999999988763 333333333 1122334588888875332211111122 23566676
Q ss_pred EEcc
Q 024221 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
-+-.
T Consensus 92 v~~p 95 (331)
T PF14893_consen 92 VFKP 95 (331)
T ss_pred EecC
Confidence 5544
No 235
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=70.24 E-value=4.5 Score=31.75 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
....++|+-|||..+|++.|..+..++|-+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 46789999999999999999999999997766655
No 236
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.81 E-value=11 Score=30.33 Aligned_cols=66 Identities=21% Similarity=0.448 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEeec--------CCCC-----CceE---------EE
Q 024221 5 ASRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLKI--------PPRP-----PGYA---------FV 50 (270)
Q Consensus 5 ~~~~v~v~nl~~~------------~t~~~l~~~F~~~G~v~~~~~~~--------~~~~-----~g~a---------fV 50 (270)
-..||++.+||-. -+++.|...|+.||.|..|.|+. ++.. .||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3568888888752 36778999999999999998843 2322 3333 35
Q ss_pred EecCHHHHHHHHHhcCCccc
Q 024221 51 EFEEARDAEDAIRGRDGYDF 70 (270)
Q Consensus 51 ~f~~~~~a~~A~~~l~g~~~ 70 (270)
+|-....-..|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55555555566666666543
No 237
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.70 E-value=1.1 Score=38.37 Aligned_cols=75 Identities=8% Similarity=-0.113 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+..-|+..+|...+++++..+|+-||.|..+.+ ..++...-.+||.-.+ .+|..+|..+--..++|-.++|.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 455678899999999999999999999988887 2345556678887766 45666666666667778888887776
No 238
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.52 E-value=3.4 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFY 28 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~ 28 (270)
-..++|.|.|||..+.+++|.+.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4678999999999999999997664
No 239
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=64.76 E-value=15 Score=24.75 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCH
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
..-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45699999988887655444555554433333334455569999888654
No 240
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=23 Score=30.26 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=45.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCc-eEEEEEecCCCCEEEEEecCHHHHHHHHHH
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (270)
...|-|.++|.....++|...|..|+.- ..|.++.+. .||..|.....|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 4589999999999999999999999854 456666554 688899999999999873
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.60 E-value=70 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHH
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYD 157 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~ 157 (270)
......+.|+++||+-++.-.+|+..+.+.|-+- +.+.....-+-||+.|.+..
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 3444556799999999999999999998877432 23333444457999998643
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.56 E-value=36 Score=21.83 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc-C-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 8 TLYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-|+-.++..+|..+|++.++.+ | .|..|.........--|||++.....|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 34555789999999999999864 3 4555554333344568999998888877654433
No 243
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.69 E-value=13 Score=31.18 Aligned_cols=6 Identities=67% Similarity=0.661 Sum_probs=2.4
Q ss_pred CCCCCc
Q 024221 255 PRSLSR 260 (270)
Q Consensus 255 ~rs~~~ 260 (270)
+|++++
T Consensus 88 sRs~sr 93 (426)
T KOG2812|consen 88 SRSPSR 93 (426)
T ss_pred ccCCCc
Confidence 344433
No 244
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.18 E-value=39 Score=20.94 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 119 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.++-++|+..+..|+-. .|..+.. --||.|.+..+|+++....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t--GfYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT--GFYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC--EEEEEECChHHHHHHHHhcCCCEEEE
Confidence 46888999999988733 2333433 24799999999999999999998865
No 245
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=59.97 E-value=13 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=22.9
Q ss_pred ceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+++|.|.+..+|.+|-..|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999987765554433
No 246
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.35 E-value=76 Score=28.77 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=53.6
Q ss_pred cccEEEecCCCCC-CCHHHHHHHHHhc----CCceEEEEEec--------------C------------CC---------
Q 024221 107 SEYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------G------------SG--------- 146 (270)
Q Consensus 107 ~~~~~~v~~l~~~-~t~~~l~~~f~~~----g~i~~~~~~~~--------------~------------~~--------- 146 (270)
....|-|.||.+. +...+|.-+|+.| |.|..|.|... + ..
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4568999999997 6788888888754 47888877642 1 00
Q ss_pred ----------------CEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 147 ----------------TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 147 ----------------~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
-||.|+|.+.+.|......++|.++...
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1799999999999999999999999864
No 247
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.12 E-value=15 Score=27.64 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=32.3
Q ss_pred CCHHHHHHHHh-hcCCeeEEEeec--CC--CCCceEEEEecCHHHHHHHHH
Q 024221 18 IREREVEDLFY-KYGPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 18 ~t~~~l~~~F~-~~G~v~~~~~~~--~~--~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+++|..+.. .-|.+..|.+.. .+ ..+|-.||+|.+.++|.+.+.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 45555555443 127888888833 23 557999999999999988776
No 248
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=58.39 E-value=5 Score=37.44 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.5
Q ss_pred eEEEEe
Q 024221 47 YAFVEF 52 (270)
Q Consensus 47 ~afV~f 52 (270)
|+.+.+
T Consensus 61 y~~t~~ 66 (1194)
T KOG4246|consen 61 YGSTSL 66 (1194)
T ss_pred ccccch
Confidence 444443
No 249
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=57.35 E-value=55 Score=23.87 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCC-CEEEEEecCHHHHHHHHHH
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 165 (270)
.+.|+..++..++..+|.+.+.. |+ .|..|....-+.+ --|||.+....+|.+...+
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 35667777889999999999986 55 5566666554443 2799999877776655443
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=56.41 E-value=46 Score=20.68 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=39.6
Q ss_pred HHHHHHHhhcC-CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
++|.+-|...| +|..+.-+. +..+....||+.....+... .++=+.+++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56778888777 566555432 35566788888877655333 3445678899999987653
No 251
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=52.59 E-value=33 Score=22.57 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEeecCCCCCceEEEEecC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
...-|||++++..+-+.--..+-+. .++=.-+-+..+....||+|-++-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456999999888765443333333 3333333334455567888887765
No 252
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.43 E-value=35 Score=27.94 Aligned_cols=55 Identities=5% Similarity=0.097 Sum_probs=44.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----------CCCEEEEEecCHHHHHHH
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----------SGTTGIVDYTNYDDMKHA 162 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-----------~~~~~fv~f~~~~~a~~a 162 (270)
...|.+.|+...++--.+...|.+||.|+.|+++.+. ......+.|-+.+.+..-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 3468888999999999999999999999999999775 112678888888777643
No 253
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.55 E-value=21 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=47.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCC------CEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
..+.|.+||+..+.++|.+....+-. +....+.....+ +.|||.|..+++...-...++|..+-.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 57889999999999999888877653 333334322111 268999999999888888888887754
No 254
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=50.44 E-value=63 Score=20.45 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC
Q 024221 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (270)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (270)
-.++.+.+..+| +..+.+.-...+++.|+-+.+.+.+.++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356677778888 444444444335588888889999888887663
No 255
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=50.12 E-value=45 Score=21.65 Aligned_cols=35 Identities=37% Similarity=0.492 Sum_probs=24.4
Q ss_pred CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc
Q 024221 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (270)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
.|.++.. ....+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEE--eCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3444433 3457999999999999999999977663
No 256
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=49.45 E-value=50 Score=19.03 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHHHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHH
Q 024221 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
.+|..+|...| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45566677665 6777776444445667778888888777665
No 257
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.05 E-value=15 Score=27.78 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=42.0
Q ss_pred cEEEecCCCCCCC-----HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 109 YRVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 109 ~~~~v~~l~~~~t-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
+++.++++...+- ......+|.+|-+....++... -+..-|.|.+++.|..|..++++..+.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs--frrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS--FRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh--hceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 4577777776652 2233445555544333333222 22567899999999999999999999986
No 258
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.38 E-value=15 Score=19.61 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhcCC
Q 024221 16 GDIREREVEDLFYKYGP 32 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (270)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 259
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=48.09 E-value=5.8 Score=33.10 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc
Q 024221 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (270)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
...|.+++.+.|.|..-.|..+ -+.|.+||.+-.++++.+++..|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4678888889998876666322 34789999999999999999988864
No 260
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.08 E-value=62 Score=20.22 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=39.2
Q ss_pred HHHHHHHhhcC-CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+|.+-|..+| ++..+.-+. +..+...-||+.....+... .|+=+.|+|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 566666533 24556678888876544333 455677899999998654
No 261
>PF15063 TC1: Thyroid cancer protein 1
Probab=48.07 E-value=13 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCee
Q 024221 10 YVGNLPGDIREREVEDLFYKYGPIA 34 (270)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~G~v~ 34 (270)
-+.||-.+++.++|..||..-|...
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccchh
Confidence 3678999999999999999988653
No 262
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=47.08 E-value=82 Score=20.81 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHHHc
Q 024221 122 WQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 122 ~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (270)
.+.+.+++...| ++..+++..+.......+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456677777776 788888888877778888999988888776544
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=46.61 E-value=77 Score=23.13 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHH
Q 024221 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+-.+...++..+|.+.++.+-.|.-..+ .......--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 444467889999999999997544444444 3333344589999987777654433
No 264
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=45.32 E-value=78 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=14.4
Q ss_pred EEEecCHHHHHHHHHhcCC-cccCCceEEEE
Q 024221 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVE 78 (270)
Q Consensus 49 fV~f~~~~~a~~A~~~l~g-~~~~g~~i~v~ 78 (270)
+|-|++...++-.+.+|.. +.++-+.|+|.
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 3455555444444554444 34444444443
No 265
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=44.68 E-value=16 Score=32.47 Aligned_cols=41 Identities=41% Similarity=0.578 Sum_probs=35.6
Q ss_pred CCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 44 PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
...|+++.|+++..+.+|+..++|..+.+..+.|..+....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 35699999999999999999999999999988888776443
No 266
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=44.53 E-value=67 Score=20.22 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=26.6
Q ss_pred HhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc
Q 024221 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
+.+||.|..+-=. ..|+ |-|-|.++++..+..|....
T Consensus 17 L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 17 LRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 4589999877432 3465 55778899999998877643
No 267
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=44.36 E-value=1.1e+02 Score=22.41 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.9
Q ss_pred eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 024221 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
|.++.++ ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 34689999999988888888887665
No 268
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=44.14 E-value=90 Score=20.93 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=33.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEe--------ecCCCCCc-eEEEEecCHHHHHHHHH
Q 024221 8 TLYVGNLPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~--------G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
++|| |.++++++++..+.+.+ |.|..+.. ...+...| |.++.|.-..++...+.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4444 56777888766655443 46666654 12344455 67788887777766665
No 269
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=42.05 E-value=1.5e+02 Score=24.35 Aligned_cols=7 Identities=0% Similarity=-0.111 Sum_probs=2.7
Q ss_pred CHHHHHH
Q 024221 54 EARDAED 60 (270)
Q Consensus 54 ~~~~a~~ 60 (270)
.+..+..
T Consensus 46 kPWItkr 52 (354)
T KOG2146|consen 46 KPWITKR 52 (354)
T ss_pred hHHHHHH
Confidence 3333333
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.16 E-value=57 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=24.5
Q ss_pred EEecCCCCEEEEEecCHHHHHHHHHHcCCccc
Q 024221 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 140 ~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
+..+.-+||-||+-.+..+..+|+..+.+...
T Consensus 38 ~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 38 FAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp EE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred EEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 44556778999999999999999987766543
No 271
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=40.61 E-value=44 Score=27.12 Aligned_cols=45 Identities=22% Similarity=0.125 Sum_probs=30.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHh
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
....|+|||++++-.-|..+++..-.+..+ |.+...|-|+..+..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~-------------v~M~QkEva~Rl~A~ 140 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM-------------VLMVQKEVAERLVAK 140 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE-------------EEEeHHHHHHHHhCC
Confidence 467899999999999999999765443222 333345666666653
No 272
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=1.1e+02 Score=20.25 Aligned_cols=65 Identities=11% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHh-hcC-CeeEEEeecCCCC----CceEEEEecCHHHHHHHHHhcCC
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFY-KYG-PIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~-~~G-~v~~~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g 67 (270)
.++++++||+ +|...++-..|.+.|+ .-| ...++.+..+|.. +.=+=+-|++-+..+...+++-|
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3577888887 8999999999999998 445 4566666444321 22334566776666666665554
No 273
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=39.86 E-value=2.9e+02 Score=25.81 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=33.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEeecCCCCCceEE-EEecCHHHHHHHHH
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKY---GPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIR 63 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~ 63 (270)
.++|.|+-||+.++.+.|.+..... |.+. |.-..+....+..| |++.....+...+.
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~ 280 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIE 280 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHH
Confidence 4689999999999999998865532 4443 22112222234555 44554444444444
No 274
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=39.70 E-value=68 Score=21.66 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 024221 16 GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
.+-++++|..+...=|.|.+|.+..+.-+.=.|.+...+..++...+..|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3445778888888778999999954443344667788999999999998764
No 275
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=39.57 E-value=1.4e+02 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=33.3
Q ss_pred CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+.++..+++..++.-. +-|+.++...|-+-+...+.++|..|+..+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 6778888888776433 445556655566677779999999998874
No 276
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=39.17 E-value=1.3e+02 Score=20.91 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=57.8
Q ss_pred cCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc--cCCceEEEEEccCCCCCCCC
Q 024221 12 GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAHGGRGRSSS 89 (270)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~i~v~~~~~~~~~~~~ 89 (270)
.-||+.++ .|-+.|+.=|+|..|... -.|.+ . .|+-.++|.. ++|. |.+.-...
T Consensus 9 qVlPPYTn--KLSDYfeSPGKI~svItv----------tqypd-n---dal~~~~G~lE~vDg~-i~IGs~q~------- 64 (145)
T TIGR02542 9 QVLPPYTN--KLSDYFESPGKIQSVITV----------TQYPD-N---DALLYVHGTLEQVDGN-IRIGSGQT------- 64 (145)
T ss_pred EecCCccc--hhhHHhcCCCceEEEEEE----------eccCC-c---hhhheeeeehhhccCc-EEEccCCC-------
Confidence 34777775 488999999999988553 12222 2 2344456632 4455 55432221
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEecC---------CCCCCCHHHHHHHHHh---cCCceEEEEEec--CCCC--EEEEEe
Q 024221 90 DRHSSHSSGRGRGVSRRSEYRVLVTG---------LPSSASWQDLKDHMRR---AGDVCFSQVFRD--GSGT--TGIVDY 153 (270)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~---------l~~~~t~~~l~~~f~~---~g~i~~~~~~~~--~~~~--~~fv~f 153 (270)
...+.|.+ .|+.+|-.+++++|.. |..|..-.+..+ +.+. .||.-|
T Consensus 65 ------------------~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~ 126 (145)
T TIGR02542 65 ------------------PASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLF 126 (145)
T ss_pred ------------------cccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEe
Confidence 01222222 3667899999999984 444544344433 2222 678877
Q ss_pred cCH
Q 024221 154 TNY 156 (270)
Q Consensus 154 ~~~ 156 (270)
...
T Consensus 127 ~~~ 129 (145)
T TIGR02542 127 NAT 129 (145)
T ss_pred ccc
Confidence 654
No 277
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.06 E-value=1e+02 Score=19.39 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+|.+.+..+| +....+.-.| .-++.|+.+.+.+.+.+++..+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 5555554332 1358888888999988887765
No 278
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.34 E-value=23 Score=27.92 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEE
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~ 140 (270)
.++|+.|+|..+|++.|..+.++.|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 48999999999999999999999997655444
No 279
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=37.09 E-value=1.5e+02 Score=21.06 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~---~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+...|.|...... .+...|.+.+..-| .++.+... .+...|.|.+.++-.+|...|....-.+-.|-+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4566777766444 56677888888776 34555443 347889999999999999887765444555555544
No 280
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.41 E-value=1.2e+02 Score=28.16 Aligned_cols=72 Identities=7% Similarity=0.045 Sum_probs=51.8
Q ss_pred EEEcCC--CCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 9 LYVGNL--PGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 9 v~v~nl--~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+|| |+ ...++..+|..++..-+.|..-.|=.-.....|.||+... ..|...+..|++..+.|+.|.|+.+..
T Consensus 489 ~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 489 YRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred EEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 455 55 4468999999999877655443330001114599999986 578888888999999999999998853
No 281
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.32 E-value=84 Score=28.21 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=42.8
Q ss_pred EEcCCCCCC---CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceE
Q 024221 10 YVGNLPGDI---REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (270)
Q Consensus 10 ~v~nl~~~~---t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i 75 (270)
+||||+.-. ....|..+=.+||+|-.+++= ..-.|...+.+.|.+|+. -|+..|.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 466664432 334455666699999988772 123688889999999999 67888988886
No 282
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=36.05 E-value=78 Score=21.35 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=28.0
Q ss_pred eEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEe-----ecCCCCCceEEEEec
Q 024221 8 TLYVGNLPGDIREREVE---DLFYKYGPIAHIDL-----KIPPRPPGYAFVEFE 53 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~---~~F~~~G~v~~~~~-----~~~~~~~g~afV~f~ 53 (270)
..|+.|||.++-+.++. ..|..+++-..|.. .....+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 35889999999888765 45555555455554 234456666665543
No 283
>PRK11901 hypothetical protein; Reviewed
Probab=35.93 E-value=1.5e+02 Score=24.84 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCCCEEEE--EecCHHHHHHHHHHcCCccc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIV--DYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~~~~fv--~f~~~~~a~~a~~~l~g~~~ 171 (270)
.++|-|..+ -.++.|..+..+++ +..++++.. ...+|..| .|.+.++|..|+..|-....
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 345555443 35777888877776 333444433 33345554 78999999999998866543
No 284
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.50 E-value=3.3e+02 Score=25.19 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=59.4
Q ss_pred CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC--Cccc------CCceEEEEEccCCCCCCCCC
Q 024221 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSSD 90 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~------~g~~i~v~~~~~~~~~~~~~ 90 (270)
-.++|.+.|..-+-|..|.+. +.||-++.+....-+......+. +..+ .|+.|.|++..+...
T Consensus 59 iA~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt----- 129 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT----- 129 (577)
T ss_pred HHHHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC-----
Confidence 344555556554456666664 23566665554444444434333 2222 478999999865332
Q ss_pred CCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEec
Q 024221 91 RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 143 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~ 143 (270)
..++|+-+=..+--+-|..++...| .|+....+.|
T Consensus 130 ------------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 ------------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ------------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 3567777777777788888888888 5666655555
No 285
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=33.91 E-value=52 Score=21.45 Aligned_cols=17 Identities=12% Similarity=0.222 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHhcCC
Q 024221 118 SSASWQDLKDHMRRAGD 134 (270)
Q Consensus 118 ~~~t~~~l~~~f~~~g~ 134 (270)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 34577888888877653
No 286
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=31.66 E-value=1.1e+02 Score=22.46 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=35.4
Q ss_pred eEEEcCCC-CCCCHHHHHHHHhhc-CCe-eEEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 8 TLYVGNLP-GDIREREVEDLFYKY-GPI-AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 8 ~v~v~nl~-~~~t~~~l~~~F~~~-G~v-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+|+|+|. ...+-++|+..+... ++. .++++ ......+.+.|+|.-+..|..-+..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~-~~~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKV-RKVEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhccccccee-eccccCceEEEEEechHHHHHHHHHHh
Confidence 35777875 223445566555533 332 33333 233456799999999999988777654
No 287
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=31.44 E-value=2.8e+02 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh
Q 024221 7 RTLYVGNLPGDIREREVEDLFYK 29 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~ 29 (270)
++|.|+.||+.++.+.+.+.+..
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~ 248 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAE 248 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHH
Confidence 68999999999999998887653
No 288
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.42 E-value=1.1e+02 Score=17.91 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCH----HHHHHHHHh
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIRG 64 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+.|.||.=.--...|.+.+...-.|..+.+.. ..+.+-|.|... +...+++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~---~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL---ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC---CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567777776667778888898888898888853 346888998754 455556553
No 289
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=31.35 E-value=1.1e+02 Score=20.32 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=33.9
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCee-EEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 11 VGNLPGDIREREVEDLFYKYGPIA-HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 11 v~nl~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
|..+.+.++...|..-|-.-|.-. --.+. ...=+.+|.|.|.+.+.+..|+..|-
T Consensus 17 lYS~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 17 LYSQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EEecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHHH
Confidence 345566777777776665444211 00010 01114699999999999999988764
No 290
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.08 E-value=82 Score=18.44 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v 33 (270)
..++|.+.....+.++|.+++..+|--
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467788877788899999999998863
No 291
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=30.87 E-value=2.1e+02 Score=20.67 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cCCCCCceEEEEecCHHHHHHHHHhcCC
Q 024221 40 IPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 40 ~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
.+...+||.||++....+...++..+.|
T Consensus 33 vp~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 33 APESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred ccCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 3446789999999988888888876766
No 292
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=30.49 E-value=1.6e+02 Score=25.13 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=28.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEeecC--------CCCCceEEEEecCHH
Q 024221 8 TLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIP--------PRPPGYAFVEFEEAR 56 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~-G~v~~~~~~~~--------~~~~g~afV~f~~~~ 56 (270)
|+++ .|...++.++|.++|..| ..-.-|+|... -....||.|-|...+
T Consensus 248 Ti~~-~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 248 TIYL-KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 3444 455569999999999855 43344444221 133567777776554
No 293
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=30.32 E-value=2.1e+02 Score=20.61 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=28.1
Q ss_pred CCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 44 PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
...+-++.+.+.. ...++..|.+..+.|++|.|....
T Consensus 25 ~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 25 SSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 4457777777765 445677789999999999998663
No 294
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=30.26 E-value=1.5e+02 Score=23.06 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.6
Q ss_pred CCHHHHHHHHhhcCC---eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
.+.+++.+....+|. |....+...+..++=+...-.++++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467888888877764 444555556666764433446789999888888787775
No 295
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=29.62 E-value=64 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.3
Q ss_pred EEEcCCCCC-CCHHHHHHHHhhcCCeeEEEeec
Q 024221 9 LYVGNLPGD-IREREVEDLFYKYGPIAHIDLKI 40 (270)
Q Consensus 9 v~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~ 40 (270)
|.|.|||.. .+++-|..+-+.+|++..+....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 667899988 68888999999999999998743
No 296
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.49 E-value=44 Score=27.03 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh
Q 024221 6 SRTLYVGNLPGDIREREVEDLFY 28 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~ 28 (270)
...++|+|||++++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 56789999999999999999987
No 297
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.25 E-value=1.9e+02 Score=26.05 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred CHHHHHHHHh----hcCCeeEEEeecC--CCCCceEEEEecCHHHHHHHHHhcC
Q 024221 19 REREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 19 t~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+--+|..+|. .+|-|..+.+... .......++.|.+.++|..|+..+-
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456777765 6888998888432 2334577889999999999988753
No 298
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.16 E-value=1.9e+02 Score=19.76 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHH
Q 024221 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..++..+|--..-.+.......-||++++.|.+....++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 3577888888744333333333456699999996665555554
No 299
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.86 E-value=11 Score=33.66 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=49.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
..+.+++.|++++.+-.+|..+|+.+-.+..+.+-.... ..+++|.|.---....|+..||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456789999999999999999999887766655544321 1268899987777777777777766553
No 300
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.55 E-value=30 Score=29.64 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCH--------HHHHHHHhh--cCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHH
Q 024221 6 SRTLYVGNLPGDIRE--------REVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~--------~~l~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+.+|+.++...-+. +++...|.. .+++..+.+.. .....|..|++|.....|+.+..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345666666665444 489999998 67777777722 45678899999999999988774
No 301
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=28.43 E-value=20 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=17.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFY 28 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~ 28 (270)
..+++||||+||...-.+.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3578999999999776555333333
No 302
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=28.33 E-value=14 Score=22.02 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=18.7
Q ss_pred CCCceEEEEecC-HHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 43 RPPGYAFVEFEE-ARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 43 ~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+|||||...+ .++.--.-..|++. ++|=.+.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 457999999987 33333333445543 344455555443
No 303
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=28.04 E-value=49 Score=29.61 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=4.3
Q ss_pred eEEEcCCC
Q 024221 8 TLYVGNLP 15 (270)
Q Consensus 8 ~v~v~nl~ 15 (270)
.|.|.++.
T Consensus 120 ~v~i~t~~ 127 (538)
T KOG1049|consen 120 NVTIRTVK 127 (538)
T ss_pred eeeecccc
Confidence 45555554
No 304
>PHA01632 hypothetical protein
Probab=27.32 E-value=71 Score=18.84 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 024221 9 LYVGNLPGDIREREVEDLFYK 29 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~ 29 (270)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999876643
No 305
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.13 E-value=2.7e+02 Score=20.86 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=40.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++-| +|+..+.++-|.++-+-+|-|....- ..-.+.|-+.+..+.|+..+.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Efee-------~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEFEE-------DDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEecC-------CcEEEEeccHHHHHHHHHHHH
Confidence 4445 89999999999999999998877622 133788999999999998653
No 306
>PRK02886 hypothetical protein; Provisional
Probab=27.12 E-value=1.7e+02 Score=19.24 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=26.5
Q ss_pred HhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc
Q 024221 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
+.+||.|..+-=. ..|+ |-|-|.++|+..+..|....
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 4599999876432 3354 55788899999998877643
No 307
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=26.96 E-value=25 Score=21.69 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEeecCCCCCceEEE-EecCHHHHHHHHHhcC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKIPPRPPGYAFV-EFEEARDAEDAIRGRD 66 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~~~~~~~g~afV-~f~~~~~a~~A~~~l~ 66 (270)
.|.|+.+...-..+.+..-+...|.-.. +.+. .+...-..+| .|.+.++|..++..|.
T Consensus 6 ~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~-~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 6 YVQVGSFSSEENAERLLAKLKKKGPDAYVVQVS-KGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHT-----EEEE-EETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEe-cCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 4556555544444445555554454333 2222 1222222333 6899999999988876
No 308
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.67 E-value=2.6e+02 Score=20.50 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=21.8
Q ss_pred EecCCCCEEEEEecCHHHHHHHHHHcCC
Q 024221 141 FRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (270)
Q Consensus 141 ~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (270)
....-+||.||+....+++..++..+.+
T Consensus 41 vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 41 APPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred ccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 3444678999999988888888877654
No 309
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=26.53 E-value=37 Score=31.08 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=53.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
+||+-|-...-+..-+...+..++++...++.. .+...+-|+++|..+..+..|.. |.++.+....+.+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 788888888888888888899888888777732 34556689999999988877766 7777777666654
No 310
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=2e+02 Score=19.34 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.3
Q ss_pred CCCceEEEEecCHHHHHHHHH
Q 024221 43 RPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 43 ~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+.....|+|.+.+.|..++.
T Consensus 51 ~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 51 RPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred CcccEEEEEcCCHHHHHHHhc
Confidence 335689999999998877654
No 311
>PRK02302 hypothetical protein; Provisional
Probab=26.23 E-value=1.8e+02 Score=19.30 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=26.5
Q ss_pred HhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc
Q 024221 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
+.+||.|..+-=. ..|+ |-|-+.++|+..+..|....
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 4599999876432 3355 55788899999998877643
No 312
>PRK11901 hypothetical protein; Reviewed
Probab=26.03 E-value=2e+02 Score=24.17 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEE--EecCHHHHHHHHHhcCC
Q 024221 17 DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFV--EFEEARDAEDAIRGRDG 67 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV--~f~~~~~a~~A~~~l~g 67 (270)
.-.++.|..|...++ +..+.+.. .|+.. |..| .|.+.++|..|+..|-.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 355778888888775 34455533 23332 3333 48999999999998764
No 313
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=25.24 E-value=63 Score=19.71 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.6
Q ss_pred CHHHHHHHHhhcCCeeEE
Q 024221 19 REREVEDLFYKYGPIAHI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~ 36 (270)
|--||.+++.+||-+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345889999999976543
No 314
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.92 E-value=3e+02 Score=25.32 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEEEecCHHHHHHHHHhcCCcccCCceEE--------------EEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEe
Q 024221 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLR--------------VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLV 113 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~g~~~~g~~i~--------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (270)
|||++.++..-+-...+|+-..+.+-.|. |.|+....-+---+ |+......+|+
T Consensus 239 C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlE------------PEGl~~~evY~ 306 (621)
T COG0445 239 CYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLE------------PEGLDTDEVYP 306 (621)
T ss_pred eeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEec------------CCCCCCceEec
Q ss_pred cCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 114 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 114 ~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.+|+..+.++.-.++....-..+.+.|.+. ||..-.+.-+..+....|--+.+.|
T Consensus 307 nGlSTSlP~dVQ~~~irsipGlEna~i~rp-----gYAIEYD~v~p~qL~~tLEtK~I~G 361 (621)
T COG0445 307 NGLSTSLPEDVQEQIIRSIPGLENAEILRP-----GYAIEYDYVDPRQLKPTLETKKIKG 361 (621)
T ss_pred CcccccCCHHHHHHHHHhCcccccceeecc-----ceeeeecccChhhcccchhhceecc
No 315
>PF14893 PNMA: PNMA
Probab=24.88 E-value=58 Score=27.50 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=20.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHh
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRR 131 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~ 131 (270)
...|.|.++|.++++.+|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 357899999999999999998764
No 316
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=24.72 E-value=3.6e+02 Score=22.84 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFV 50 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV 50 (270)
++|..++|+|-+-.+---+.|.+....-|--....+..++ +.|.|-|
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~-~TGtCav 124 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDG-PTGTCAV 124 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCC-CCceEEE
Confidence 4577999999888777667777776666633333333332 3344433
No 317
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.65 E-value=1.5e+02 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHhcCCceE
Q 024221 117 PSSASWQDLKDHMRRAGDVCF 137 (270)
Q Consensus 117 ~~~~t~~~l~~~f~~~g~i~~ 137 (270)
...+|.++|.++|.+|+.-..
T Consensus 106 ~hgcT~e~I~~~F~~ys~~~~ 126 (175)
T PF12993_consen 106 KHGCTLEDILELFHKYSDNVH 126 (175)
T ss_pred cCCcCHHHHHHHHHHhcCCeE
Confidence 357899999999999997433
No 318
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.50 E-value=22 Score=22.10 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
++|.+.|..++....+. +-.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHh
Confidence 57777776543322221 227899999999988777654
No 319
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=2.3e+02 Score=19.83 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHhhcCCe-----eEEEe---ecCCCCCceEEEEecCHHHHH
Q 024221 16 GDIREREVEDLFYKYGPI-----AHIDL---KIPPRPPGYAFVEFEEARDAE 59 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~v-----~~~~~---~~~~~~~g~afV~f~~~~~a~ 59 (270)
++++.+||++-+++.-.. .-+.+ .-.|.+.|||.| |.+.+.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 358889998877644221 11112 114667778866 66655544
No 320
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=23.99 E-value=2.2e+02 Score=18.83 Aligned_cols=73 Identities=15% Similarity=0.336 Sum_probs=38.8
Q ss_pred HHHHHhhcCCeeEEEeecCCCCCceEE-EEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCC
Q 024221 23 VEDLFYKYGPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGR 101 (270)
Q Consensus 23 l~~~F~~~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (270)
|+-+|-.+|.|.+ ..++|.+ +.+.+.+.|+.....|+...+.-+.+..
T Consensus 5 lrG~Fl~~Gsi~~-------P~~~YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r------------------------ 53 (93)
T PF14527_consen 5 LRGAFLACGSISD-------PKKSYHLEIRFNDEEFAEQLKELLNKFGINAKIIKR------------------------ 53 (93)
T ss_dssp HHHHHHHHEEE---------TTT---EEEEES-HHHHHHHHHHHHHH----EEEEE------------------------
T ss_pred HHHHHHCCeeccC-------CCCceEEEEecCCHHHHHHHHHHHHHcCCCceeeee------------------------
Confidence 5666777776543 1233444 6778888888888877754443333322
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCce
Q 024221 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (270)
Q Consensus 102 ~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~ 136 (270)
.....+||. ..++|.+++.-.|...
T Consensus 54 ----~~~~~vYlK------~~e~I~dfL~~iGA~~ 78 (93)
T PF14527_consen 54 ----KNKYVVYLK------DSEQISDFLKLIGAHK 78 (93)
T ss_dssp ----SSEEEEEE--------HHHHHHHHHHTT--C
T ss_pred ----cCceEEEEc------CHHHHHHHHHHcChHH
Confidence 123577777 4678888888887653
No 321
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.91 E-value=1.7e+02 Score=17.47 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHH
Q 024221 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (270)
Q Consensus 121 t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (270)
.-.++-++|.+.| .|.++........+..-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 5677888888877 6777776555444444455666666666665
No 322
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=23.29 E-value=5e+02 Score=23.27 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=33.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh---cCCeeEEEeecCCCCCceEE-EEecCHHHHHHHHHh
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIRG 64 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~ 64 (270)
.++|.|+.||+.++.+.|.+.+.. -|.|.-..+ .+....+..| |++....+++..+..
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~I~~i-~D~s~~~v~i~I~Lk~~~~~~~vl~~ 281 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIKIDSI-QDFSTDLPHIEIKLPKGIYAKDLLRP 281 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCcccee-eccCCCCceEEEEECCCCCHHHHHHH
Confidence 468999999999999999886553 355531112 2211123444 455555555554443
No 323
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=23.25 E-value=2.1e+02 Score=18.21 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=38.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-------CCeeEEEee-cCCCCCceEEEEecCHHHHHHHHHhcCCcc
Q 024221 9 LYVGNLPGDIREREVEDLFYKY-------GPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~-------G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
|...+||..+|.++|......- ..|.-+.-. .....+-||+.+=.+++.+.++-. -.|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCC
Confidence 5677899999999988766433 344444442 223446677777788777776665 33543
No 324
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=23.25 E-value=2.6e+02 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 143 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~ 143 (270)
++......+|+.++...+.++...++|.....++.+.|++.
T Consensus 296 peg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~ 336 (618)
T PRK05192 296 PEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRP 336 (618)
T ss_pred cCCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeec
Confidence 55556789999999999999999999998888888888766
No 325
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=22.92 E-value=1.1e+02 Score=28.31 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI 40 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~ 40 (270)
+..+..+|+.+|..++.++.-.++|...--+..+.|..
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r 335 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILR 335 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEee
Confidence 46788999999999999999999999887788888853
No 326
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.71 E-value=98 Score=24.80 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 024221 8 TLYVGNLPGDIREREVEDLFYKY 30 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~ 30 (270)
.+.|+|||++++...|.+++..+
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~ 118 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKP 118 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccC
Confidence 47899999999999999999643
No 327
>PHA03075 glutaredoxin-like protein; Provisional
Probab=22.43 E-value=1.8e+02 Score=20.33 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=13.8
Q ss_pred HHHHHhhcCCeeEEEeecCCCCCceEEEEe
Q 024221 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEF 52 (270)
Q Consensus 23 l~~~F~~~G~v~~~~~~~~~~~~g~afV~f 52 (270)
|-++|+.+|.-.-.-++++......|||-|
T Consensus 59 Inn~~~~lgne~v~lfKydp~t~qmA~V~i 88 (123)
T PHA03075 59 INNFFKHLGNEYVSLFKYDPETKQMAFVDI 88 (123)
T ss_pred HHHHHHhhcccEEEEEEEcCCCCcEEEEeh
Confidence 444555555322223344444455566554
No 328
>KOG4066 consensus Cell growth regulatory protein CGR11 [Function unknown]
Probab=22.18 E-value=1.8e+02 Score=21.62 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=35.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.+.=.+=.|-+|+|..+ |-+-|.+|| .+.++.....|.|.+.-+-+.+.+.|. ..+.|.++..
T Consensus 71 tRtL~sE~ilsLSP~~n---ISdAf~kFg--------I~~~st~Ii~vk~d~~~dke~~~e~l~-k~VeG~~Vef 133 (177)
T KOG4066|consen 71 TRTLHSEVILSLSPKTN---ISDAFRKFG--------ITKKSTNIIVVKIDSKLDKEEEFERLD-KLVEGNRVEF 133 (177)
T ss_pred eccccceeEEEeCCCcc---hHHHHHHhC--------cccCCccEEEEEecCCccHHHHHHHHH-HHhcCCcccc
Confidence 33333445667877765 556677887 233455566677766444455555443 3455665543
No 329
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=22.15 E-value=73 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=16.9
Q ss_pred cCCCCCCCHHHHHHHHhhcCCe
Q 024221 12 GNLPGDIREREVEDLFYKYGPI 33 (270)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G~v 33 (270)
|.|...+++++|.+++.....-
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~~ 96 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISEQ 96 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCCC
T ss_pred CCCCCCcCHHHHHHHHHHHhhc
Confidence 6788999999999999987543
No 330
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=22.06 E-value=1.1e+02 Score=27.71 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024221 199 RSYSRGRSESRSRSRSRGRSYSRSRSQSKSPKAKSSRRSPDRSRSRSASRSRSG 252 (270)
Q Consensus 199 rs~~~~r~rsrsr~r~rsr~r~r~rsrsrs~~~r~~~r~~~r~r~r~r~r~rs~ 252 (270)
+.+.+...+.+.+.+.|...+.+.|.+-|.++++.+.+.+...|.+.+.|.+..
T Consensus 6 ~RrRr~W~~rrrrr~Rr~~rrrrrr~~~RRRrr~r~~rrR~~~Rr~r~rr~r~~ 59 (525)
T PF02956_consen 6 RRRRRRWRRRRRRRRRRRWRRRRRRRRVRRRRRRRRRRRRRRRRRRRRRRKRKK 59 (525)
T ss_pred hhhhccccccccCcCccccCCcCCcccccccccccccccCcceecccccccccc
No 331
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.85 E-value=1.8e+02 Score=20.52 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=5.6
Q ss_pred ceEEEEecCH
Q 024221 46 GYAFVEFEEA 55 (270)
Q Consensus 46 g~afV~f~~~ 55 (270)
||-||.|.++
T Consensus 98 GFLYi~Ys~e 107 (121)
T PTZ00380 98 GFLYVSVRTE 107 (121)
T ss_pred CeEEEEEccc
Confidence 4556666554
No 332
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=21.73 E-value=1.7e+02 Score=22.99 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=25.9
Q ss_pred EEcCCCCCCCHHH--------HHHHHhhcCCeeEEEeecCCCCCceEEEEecCH
Q 024221 10 YVGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 10 ~v~nl~~~~t~~~--------l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+-.||..+|.++ +.++|..+|-+.++-|..++.....|-|-|.+-
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R 124 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTR 124 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecC
Confidence 4458999999888 334466678888888864444455777777553
No 333
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=21.64 E-value=2.7e+02 Score=22.28 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCeEEEcCCCCCCC-H---HHHHHHHhhcC-CeeEEEeecCCCCCceEEEEe-cCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 6 SRTLYVGNLPGDIR-E---REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEF-EEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 6 ~~~v~v~nl~~~~t-~---~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
...||||+|...+- . +.|-..+-+.+ .+..+.+. ....||+.-.. .+.++-..++..+.+..+--..+-|.+
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~--Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~Gh 114 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLR--SSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGH 114 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecc--ccccccccccccccHHHHHHHHHHhhccCcccceEEEec
Confidence 45799999976532 2 22333332222 23333331 12233443333 466777778887777766666666665
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 115 ST 116 (299)
T KOG4840|consen 115 ST 116 (299)
T ss_pred Cc
Confidence 55
No 334
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=21.40 E-value=68 Score=19.67 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=16.2
Q ss_pred HHhhcCCeeEEEeecCCCCCceEEEEecC
Q 024221 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (270)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
+|+.=|+|.+++ -.||+|.|.-
T Consensus 31 ife~~GEvl~ik-------gdYa~vr~~~ 52 (67)
T PF11910_consen 31 IFEGPGEVLDIK-------GDYAQVRFRV 52 (67)
T ss_pred eecCCCeEEEec-------CCEEEEEecC
Confidence 577778887775 2499999953
No 335
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.22 E-value=1.1e+02 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh
Q 024221 8 TLYVGNLPGDIREREVEDLFYK 29 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~ 29 (270)
.+.|+|||++++...|..+++.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999999988864
No 336
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=91 Score=20.94 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=16.5
Q ss_pred ceEEEEecCHHHHHHHHHhc
Q 024221 46 GYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l 65 (270)
-|.+++|.+.+.+..|+..+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48899999998888887753
No 337
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=20.83 E-value=3e+02 Score=26.43 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCeEEEcCCC--CCCCHHHHHHHHhhcC-CeeEEEeecCC-CCCceEEEEecCHHHHHHHHHhcCCcccCCceE
Q 024221 6 SRTLYVGNLP--GDIREREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (270)
Q Consensus 6 ~~~v~v~nl~--~~~t~~~l~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i 75 (270)
..-|+|.+-. +.++.....++|..|| +|+-+.+.+++ +.+.-+.+ .++-..|+..||.....-..|
T Consensus 309 KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~IL----~~eF~~ai~yLNqflp~e~rl 378 (868)
T KOG1888|consen 309 KPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESIL----REEFENAIDYLNQFLPPENRL 378 (868)
T ss_pred CCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHHH----HHHHHHHHHHHhccCCCccee
Confidence 3346666653 5688889999999998 56666676655 22222221 234456777777433333333
No 338
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=20.83 E-value=2.1e+02 Score=17.29 Aligned_cols=45 Identities=7% Similarity=0.144 Sum_probs=39.1
Q ss_pred CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHH
Q 024221 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 121 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (270)
..+++.+.+.....|..|+...+...-...|.+.+.++....+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 467888899999999999999998877889999999999988654
No 339
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.37 E-value=1.3e+02 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.2
Q ss_pred EEEEecCHHHHHHHHHHcCCccc
Q 024221 149 GIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
|||+|++..+|..|.+.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999996655543
No 340
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=20.17 E-value=1.1e+02 Score=29.07 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 43 RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 43 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+.+.|||+|+++..|+.|.+..-+..+.+..
T Consensus 355 t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~ 386 (827)
T COG5594 355 TPTKSGFITFKSQASAQIAAQSQIYSRVLGKL 386 (827)
T ss_pred CccccEEEEEehhHHHHHHHHhhhhhhhhcce
Confidence 33569999999999999988854344444443
Done!