Query 024221
Match_columns 270
No_of_seqs 305 out of 2665
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 100.0 1.4E-34 4.7E-39 224.2 20.0 178 4-183 2-202 (205)
2 4f02_A Polyadenylate-binding p 100.0 3.6E-35 1.2E-39 229.7 16.2 163 4-187 13-180 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 1.5E-33 5.1E-38 212.1 19.5 158 7-185 1-164 (166)
4 3pgw_A U1-A; protein-RNA compl 100.0 1.5E-32 5E-37 224.2 23.7 178 3-185 6-280 (282)
5 1fxl_A Paraneoplastic encephal 100.0 6E-33 2.1E-37 209.0 19.5 152 5-175 1-159 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 5E-33 1.7E-37 214.9 19.0 166 4-188 11-183 (196)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-32 3.7E-37 207.9 20.1 150 5-173 2-158 (168)
8 2adc_A Polypyrimidine tract-bi 100.0 2.7E-32 9.2E-37 215.7 21.4 177 3-186 31-226 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 1.2E-31 4.1E-36 207.5 23.0 177 4-188 2-194 (198)
10 1qm9_A Polypyrimidine tract-bi 100.0 4.6E-32 1.6E-36 209.9 19.8 174 5-185 2-194 (198)
11 2qfj_A FBP-interacting repress 100.0 8.7E-32 3E-36 211.1 21.5 171 5-187 27-204 (216)
12 3nmr_A Cugbp ELAV-like family 100.0 2.9E-32 9.8E-37 206.8 17.5 151 5-173 2-163 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 1.1E-31 3.8E-36 203.1 19.1 153 4-183 2-169 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 4.8E-33 1.6E-37 211.3 11.2 162 3-187 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 3.3E-32 1.1E-36 205.0 12.4 158 4-187 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 1.9E-30 6.5E-35 209.1 17.7 155 5-187 21-178 (261)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.7E-30 5.9E-35 212.9 17.4 166 5-187 116-290 (292)
18 3smz_A Protein raver-1, ribonu 100.0 5.3E-30 1.8E-34 209.2 19.3 165 4-188 93-264 (284)
19 3smz_A Protein raver-1, ribonu 100.0 9.5E-30 3.2E-34 207.7 20.2 151 4-187 20-174 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 7.3E-30 2.5E-34 209.2 18.3 152 4-186 39-195 (292)
21 4f25_A Polyadenylate-binding p 99.9 4.5E-25 1.5E-29 155.2 9.6 109 5-124 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.2E-22 4.2E-27 173.7 19.5 81 4-84 100-183 (437)
23 3pgw_S U1-70K; protein-RNA com 99.9 6.2E-23 2.1E-27 175.5 12.2 157 13-176 4-174 (437)
24 4fxv_A ELAV-like protein 1; RN 99.9 6.6E-23 2.3E-27 139.9 9.4 78 5-82 18-98 (99)
25 3lqv_A PRE-mRNA branch site pr 99.9 4.5E-23 1.5E-27 145.2 8.4 105 3-134 5-109 (115)
26 2hvz_A Splicing factor, argini 99.9 4.6E-22 1.6E-26 136.6 9.7 100 7-117 1-100 (101)
27 2wbr_A GW182, gawky, LD47780P; 99.9 9.7E-22 3.3E-26 127.6 10.6 74 4-80 5-78 (89)
28 1x4a_A Splicing factor, argini 99.9 1.9E-21 6.5E-26 135.4 11.9 83 3-85 19-101 (109)
29 1sjq_A Polypyrimidine tract-bi 99.9 9.6E-22 3.3E-26 133.8 9.7 81 2-85 12-94 (105)
30 2fy1_A RNA-binding motif prote 99.9 5E-21 1.7E-25 134.5 13.6 86 1-86 2-89 (116)
31 2lxi_A RNA-binding protein 10; 99.9 4.8E-22 1.6E-26 133.5 7.7 79 6-84 1-84 (91)
32 3s8s_A Histone-lysine N-methyl 99.9 9E-22 3.1E-26 136.7 9.2 79 4-82 4-85 (110)
33 2i2y_A Fusion protein consists 99.9 2.3E-21 7.8E-26 142.9 11.7 138 41-187 9-147 (150)
34 3r27_A HnRNP L, heterogeneous 99.9 2.3E-21 7.9E-26 130.6 10.0 77 4-83 19-97 (100)
35 1whw_A Hypothetical protein ri 99.9 8.5E-21 2.9E-25 129.8 12.7 83 3-85 5-90 (99)
36 2a3j_A U1 small nuclear ribonu 99.9 4.1E-21 1.4E-25 136.4 11.2 81 3-83 26-110 (127)
37 2kn4_A Immunoglobulin G-bindin 99.9 1.8E-20 6.2E-25 139.3 14.6 143 36-188 3-150 (158)
38 2x1f_A MRNA 3'-END-processing 99.9 5.4E-21 1.8E-25 130.0 10.6 80 5-84 1-83 (96)
39 2dnz_A Probable RNA-binding pr 99.9 1.6E-20 5.5E-25 127.4 13.0 82 4-85 3-87 (95)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.2E-21 1.4E-25 127.5 9.6 79 3-81 4-85 (85)
41 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-20 5.3E-25 129.4 12.7 82 3-84 12-94 (103)
42 2lkz_A RNA-binding protein 5; 99.8 1.5E-21 5.1E-26 131.6 7.2 79 4-82 7-94 (95)
43 2cpf_A RNA binding motif prote 99.8 5.5E-21 1.9E-25 130.5 10.1 83 3-85 2-90 (98)
44 2dnm_A SRP46 splicing factor; 99.8 9.4E-21 3.2E-25 130.5 11.0 82 4-85 11-95 (103)
45 2ad9_A Polypyrimidine tract-bi 99.8 7.6E-21 2.6E-25 132.7 10.5 81 3-86 28-110 (119)
46 2d9p_A Polyadenylate-binding p 99.8 1E-20 3.5E-25 130.3 11.0 83 3-85 12-95 (103)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.4E-21 2.9E-25 130.5 10.5 82 4-85 10-94 (102)
48 2dgs_A DAZ-associated protein 99.8 2.1E-20 7.1E-25 127.8 12.4 82 3-85 7-91 (99)
49 2dgx_A KIAA0430 protein; RRM d 99.8 9.9E-21 3.4E-25 128.6 10.7 81 4-84 7-91 (96)
50 2dgv_A HnRNP M, heterogeneous 99.8 8.5E-21 2.9E-25 128.0 10.2 83 3-85 5-88 (92)
51 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-20 4.7E-25 129.5 11.4 82 4-85 10-94 (102)
52 2cq1_A PTB-like protein L; RRM 99.8 1.7E-20 6E-25 127.7 11.7 80 3-85 12-93 (101)
53 1x5u_A Splicing factor 3B subu 99.8 2E-20 7E-25 129.3 12.2 81 4-84 13-96 (105)
54 1nu4_A U1A RNA binding domain; 99.8 2.9E-21 9.9E-26 131.6 7.6 83 1-83 3-89 (97)
55 1x4d_A Matrin 3; structural ge 99.8 5.4E-21 1.8E-25 130.1 8.9 79 3-84 12-93 (102)
56 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.2E-25 127.7 10.6 78 4-81 14-94 (94)
57 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-20 8.2E-25 131.1 12.5 83 4-86 13-98 (115)
58 1x5t_A Splicing factor 3B subu 99.8 1.2E-20 4.2E-25 128.2 10.6 81 4-84 3-87 (96)
59 3md1_A Nuclear and cytoplasmic 99.8 9.2E-21 3.1E-25 125.3 9.6 77 6-82 1-80 (83)
60 2do4_A Squamous cell carcinoma 99.8 1.5E-20 5.2E-25 128.8 10.9 81 4-84 15-97 (100)
61 1wex_A Hypothetical protein (r 99.8 2E-20 6.8E-25 128.3 11.4 79 4-85 13-93 (104)
62 2cq3_A RNA-binding protein 9; 99.8 3.5E-20 1.2E-24 127.6 12.7 83 3-85 12-95 (103)
63 2div_A TRNA selenocysteine ass 99.8 8.4E-21 2.9E-25 129.8 9.5 83 2-84 5-95 (99)
64 2dgu_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 127.5 12.6 78 4-86 9-86 (103)
65 2cq0_A Eukaryotic translation 99.8 8.6E-21 2.9E-25 130.7 9.4 81 4-84 13-96 (103)
66 3bs9_A Nucleolysin TIA-1 isofo 99.8 8E-21 2.7E-25 126.7 8.8 79 4-82 4-85 (87)
67 2cph_A RNA binding motif prote 99.8 3.5E-20 1.2E-24 128.6 12.3 82 3-84 12-98 (107)
68 4a8x_A RNA-binding protein wit 99.8 1.5E-20 5.2E-25 125.6 10.1 80 4-83 2-85 (88)
69 2do0_A HnRNP M, heterogeneous 99.8 4.2E-20 1.5E-24 129.6 12.6 83 3-85 12-96 (114)
70 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-20 5.6E-25 132.0 10.1 82 4-85 23-107 (115)
71 2dnq_A RNA-binding protein 4B; 99.8 4.4E-20 1.5E-24 123.9 11.7 78 3-85 5-82 (90)
72 2cqd_A RNA-binding region cont 99.8 8.2E-20 2.8E-24 128.6 13.7 81 3-84 14-97 (116)
73 1x4c_A Splicing factor, argini 99.8 6.2E-20 2.1E-24 127.4 12.8 78 4-85 13-95 (108)
74 1p27_B RNA-binding protein 8A; 99.8 1.5E-20 5E-25 130.3 9.3 80 4-83 21-103 (106)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-20 1E-24 128.4 10.8 81 4-84 13-98 (105)
76 2dgp_A Bruno-like 4, RNA bindi 99.8 4.1E-20 1.4E-24 128.0 11.3 82 3-84 10-97 (106)
77 2dgt_A RNA-binding protein 30; 99.8 5E-20 1.7E-24 124.1 11.4 78 3-85 7-84 (92)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 3.4E-20 1.2E-24 127.9 10.8 80 3-84 12-95 (104)
79 1x4h_A RNA-binding protein 28; 99.8 6.4E-20 2.2E-24 128.1 12.2 81 4-84 13-102 (111)
80 2dnp_A RNA-binding protein 14; 99.8 4.7E-20 1.6E-24 123.7 11.0 77 3-84 6-82 (90)
81 1s79_A Lupus LA protein; RRM, 99.8 2E-20 6.8E-25 128.3 9.3 77 4-81 9-87 (103)
82 2ywk_A Putative RNA-binding pr 99.8 1.5E-20 5.1E-25 127.6 8.5 79 3-81 13-93 (95)
83 2cqc_A Arginine/serine-rich sp 99.8 1.5E-20 5.1E-25 127.5 8.4 78 4-81 13-93 (95)
84 1x4f_A Matrin 3; structural ge 99.8 1.3E-20 4.6E-25 130.0 8.1 79 3-84 22-103 (112)
85 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-20 7.9E-25 129.2 9.3 78 4-82 26-104 (111)
86 2kxn_B Transformer-2 protein h 99.8 1.7E-20 5.8E-25 134.2 8.9 81 4-84 44-127 (129)
87 3p5t_L Cleavage and polyadenyl 99.8 3.3E-21 1.1E-25 129.4 4.8 78 7-84 2-84 (90)
88 1why_A Hypothetical protein ri 99.8 5E-20 1.7E-24 125.4 10.8 77 4-83 15-93 (97)
89 1whx_A Hypothetical protein ri 99.8 2.7E-20 9.1E-25 129.7 9.5 78 4-84 8-85 (111)
90 3ns6_A Eukaryotic translation 99.8 8.1E-21 2.8E-25 129.9 6.7 78 5-82 5-92 (100)
91 2nlw_A Eukaryotic translation 99.8 4E-20 1.4E-24 127.7 9.9 79 4-82 13-99 (105)
92 1oo0_B CG8781-PA, drosophila Y 99.8 3.1E-20 1.1E-24 129.5 9.4 80 4-83 24-106 (110)
93 3ucg_A Polyadenylate-binding p 99.8 5.3E-20 1.8E-24 123.3 10.2 78 5-83 5-85 (89)
94 2cq2_A Hypothetical protein LO 99.8 5.2E-20 1.8E-24 127.1 10.2 80 2-84 21-107 (114)
95 2krb_A Eukaryotic translation 99.8 2E-20 6.7E-25 123.0 7.7 72 6-77 1-80 (81)
96 2dhg_A TRNA selenocysteine ass 99.8 5.9E-20 2E-24 126.7 10.4 82 3-84 6-91 (104)
97 3ulh_A THO complex subunit 4; 99.8 3.4E-20 1.2E-24 128.6 9.2 78 4-81 27-106 (107)
98 2la6_A RNA-binding protein FUS 99.8 3.6E-20 1.2E-24 126.6 9.2 78 4-81 11-99 (99)
99 2khc_A Testis-specific RNP-typ 99.8 2.7E-20 9.3E-25 131.4 8.8 79 3-81 37-118 (118)
100 3beg_B Splicing factor, argini 99.8 3.8E-20 1.3E-24 129.9 9.4 71 4-78 14-84 (115)
101 2jrs_A RNA-binding protein 39; 99.8 2.9E-20 9.9E-25 128.9 8.7 79 4-82 24-105 (108)
102 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-19 3.8E-24 126.4 11.7 78 4-84 23-100 (109)
103 2ytc_A PRE-mRNA-splicing facto 99.8 4.4E-20 1.5E-24 122.5 9.3 76 3-81 9-85 (85)
104 2cpe_A RNA-binding protein EWS 99.8 6E-20 2E-24 128.7 10.3 82 4-85 13-105 (113)
105 2err_A Ataxin-2-binding protei 99.8 4.2E-20 1.4E-24 128.4 9.4 79 4-82 27-106 (109)
106 3ex7_B RNA-binding protein 8A; 99.8 4.7E-20 1.6E-24 131.8 9.8 82 4-85 20-104 (126)
107 2dng_A Eukaryotic translation 99.8 7.3E-20 2.5E-24 126.0 10.4 80 3-84 12-94 (103)
108 2cpj_A Non-POU domain-containi 99.8 7.6E-20 2.6E-24 125.0 10.3 78 4-84 13-90 (99)
109 3s7r_A Heterogeneous nuclear r 99.8 6.5E-20 2.2E-24 122.3 9.6 77 3-80 8-87 (87)
110 2xnq_A Nuclear polyadenylated 99.8 1E-19 3.5E-24 123.7 10.7 75 3-82 19-94 (97)
111 2kt5_A RNA and export factor-b 99.8 1.4E-19 4.9E-24 128.8 12.0 82 4-85 33-116 (124)
112 2cpx_A Hypothetical protein FL 99.8 7.4E-20 2.5E-24 128.6 10.3 81 4-85 23-107 (115)
113 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.6E-24 131.7 11.8 83 4-86 40-125 (139)
114 2kvi_A Nuclear polyadenylated 99.8 5.4E-20 1.9E-24 124.9 9.0 77 4-85 8-85 (96)
115 2dis_A Unnamed protein product 99.8 2.1E-19 7.2E-24 125.0 12.2 83 3-85 5-94 (109)
116 2cpi_A CCR4-NOT transcription 99.8 3.2E-20 1.1E-24 129.5 8.0 81 4-84 13-102 (111)
117 2fc9_A NCL protein; structure 99.8 7.7E-20 2.6E-24 125.4 9.8 80 4-84 13-92 (101)
118 2jvo_A Nucleolar protein 3; nu 99.8 7.8E-20 2.7E-24 126.7 9.6 76 4-84 29-104 (108)
119 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-19 5.6E-24 125.3 11.1 80 4-84 23-105 (109)
120 2cpd_A Apobec-1 stimulating pr 99.8 2.5E-19 8.7E-24 122.3 11.7 76 4-84 13-90 (99)
121 2dh8_A DAZ-associated protein 99.8 6.2E-20 2.1E-24 126.8 8.5 82 3-85 13-97 (105)
122 2lea_A Serine/arginine-rich sp 99.8 7E-20 2.4E-24 132.1 8.8 82 4-85 45-129 (135)
123 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-19 3.7E-24 123.7 9.2 78 4-83 17-94 (97)
124 3n9u_C Cleavage and polyadenyl 99.8 8.7E-20 3E-24 134.6 9.3 77 5-81 54-135 (156)
125 2mss_A Protein (musashi1); RNA 99.8 6.2E-20 2.1E-24 118.8 7.5 72 8-80 1-75 (75)
126 1x4e_A RNA binding motif, sing 99.8 1.4E-20 4.9E-25 124.9 4.4 78 3-80 2-82 (85)
127 2la4_A Nuclear and cytoplasmic 99.8 8.4E-20 2.9E-24 125.2 8.2 76 4-82 25-100 (101)
128 2cqh_A IGF-II mRNA-binding pro 99.8 1.1E-19 3.6E-24 122.8 8.6 78 3-84 5-84 (93)
129 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-19 8.8E-24 133.1 11.4 82 4-85 68-152 (158)
130 1p1t_A Cleavage stimulation fa 99.8 8E-20 2.7E-24 126.1 8.1 81 4-84 6-89 (104)
131 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-19 6.6E-24 133.4 10.6 82 4-85 37-121 (156)
132 2m2b_A RNA-binding protein 10; 99.8 1.2E-19 4E-24 130.4 9.0 81 3-84 20-109 (131)
133 2cqp_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 126.0 6.4 79 4-82 13-94 (98)
134 2cq4_A RNA binding motif prote 99.8 1.3E-19 4.3E-24 127.2 8.9 77 5-82 24-103 (114)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.6E-20 2.6E-24 125.1 7.4 77 4-82 17-97 (100)
136 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.9E-20 2.7E-24 118.9 6.8 73 7-80 1-76 (77)
137 1wf1_A RNA-binding protein RAL 99.8 2.5E-19 8.5E-24 124.8 9.7 75 5-84 26-101 (110)
138 2ek1_A RNA-binding protein 12; 99.8 3.6E-20 1.2E-24 125.7 5.2 77 5-81 14-93 (95)
139 1fjc_A Nucleolin RBD2, protein 99.8 6.9E-20 2.4E-24 124.5 6.5 78 4-83 14-91 (96)
140 2cqg_A TDP-43, TAR DNA-binding 99.8 6.3E-19 2.1E-23 121.3 11.3 81 3-85 12-95 (103)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-19 1.2E-23 129.7 10.4 77 4-80 61-140 (140)
142 1wg5_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 121.6 11.0 80 4-84 13-95 (104)
143 2diu_A KIAA0430 protein; struc 99.8 6.7E-19 2.3E-23 115.3 10.6 74 4-84 6-85 (96)
144 2ki2_A SS-DNA binding protein 99.8 4.4E-20 1.5E-24 123.9 5.2 77 7-84 2-81 (90)
145 2fc8_A NCL protein; structure 99.8 2.4E-19 8.1E-24 123.2 9.0 81 4-84 13-93 (102)
146 3egn_A RNA-binding protein 40; 99.8 1.1E-19 3.8E-24 132.7 7.6 82 3-84 42-131 (143)
147 2dgw_A Probable RNA-binding pr 99.8 4.1E-19 1.4E-23 119.4 9.7 78 4-83 8-87 (91)
148 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-19 7.8E-24 134.2 9.0 81 4-84 70-153 (165)
149 2jwn_A Embryonic polyadenylate 99.8 4.3E-19 1.5E-23 126.4 10.0 79 5-84 35-116 (124)
150 1x4b_A Heterogeneous nuclear r 99.8 6.8E-19 2.3E-23 123.8 10.8 79 5-84 26-107 (116)
151 2cpy_A RNA-binding protein 12; 99.8 2.1E-19 7.2E-24 125.9 8.0 78 4-82 13-93 (114)
152 3beg_B Splicing factor, argini 99.8 1.2E-19 4.2E-24 127.3 6.8 79 106-187 14-93 (115)
153 1wg1_A KIAA1579 protein, homol 99.8 2.4E-19 8.1E-24 119.7 7.5 77 3-83 2-78 (88)
154 1x5o_A RNA binding motif, sing 99.8 4.5E-19 1.5E-23 124.4 9.3 79 4-82 23-111 (114)
155 2i2y_A Fusion protein consists 99.8 5E-19 1.7E-23 130.3 9.9 78 4-83 71-148 (150)
156 1x5p_A Negative elongation fac 99.8 1.9E-18 6.4E-23 117.5 11.8 76 4-84 13-88 (97)
157 2e5g_A U6 snRNA-specific termi 99.8 1.2E-18 4E-23 117.8 10.5 78 4-84 6-83 (94)
158 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-19 7.7E-24 116.1 6.7 72 8-80 1-75 (75)
159 1fj7_A Nucleolin RBD1, protein 99.8 7.7E-20 2.7E-24 125.4 4.7 80 4-84 15-96 (101)
160 2e44_A Insulin-like growth fac 99.8 9.4E-19 3.2E-23 118.8 9.9 79 4-83 13-92 (96)
161 1wez_A HnRNP H', FTP-3, hetero 99.8 3.9E-19 1.3E-23 121.8 8.0 79 4-84 13-93 (102)
162 2hgl_A HNRPF protein, heteroge 99.8 4.6E-19 1.6E-23 127.3 8.7 77 4-81 42-123 (136)
163 2db1_A Heterogeneous nuclear r 99.8 2.5E-19 8.7E-24 126.2 7.0 77 4-81 15-96 (118)
164 2f3j_A RNA and export factor b 99.8 9.8E-19 3.4E-23 131.8 10.1 80 4-83 86-167 (177)
165 1wel_A RNA-binding protein 12; 99.8 5.7E-19 1.9E-23 125.7 7.6 77 4-81 23-102 (124)
166 1x4c_A Splicing factor, argini 99.8 9.6E-18 3.3E-22 116.3 13.6 82 103-187 10-92 (108)
167 3q2s_C Cleavage and polyadenyl 99.8 6.3E-19 2.2E-23 138.3 8.5 77 5-81 67-148 (229)
168 1sjr_A Polypyrimidine tract-bi 99.8 4.4E-18 1.5E-22 124.6 11.9 77 7-84 47-125 (164)
169 2dnn_A RNA-binding protein 12; 99.8 2E-18 6.9E-23 119.2 9.3 74 6-81 16-91 (109)
170 2lmi_A GRSF-1, G-rich sequence 99.8 5.1E-19 1.7E-23 122.5 6.1 78 3-81 8-90 (107)
171 2hzc_A Splicing factor U2AF 65 99.8 2E-18 7E-23 114.9 8.6 73 3-79 3-86 (87)
172 3zzy_A Polypyrimidine tract-bi 99.8 3.2E-18 1.1E-22 120.8 9.7 75 8-84 30-107 (130)
173 2dha_A FLJ20171 protein; RRM d 99.8 4.8E-19 1.6E-23 124.9 5.3 77 4-81 21-103 (123)
174 2e5i_A Heterogeneous nuclear r 99.8 6.1E-18 2.1E-22 118.9 10.4 77 5-84 22-103 (124)
175 2pe8_A Splicing factor 45; RRM 99.8 5.8E-18 2E-22 116.2 9.8 81 2-82 4-93 (105)
176 2hgn_A Heterogeneous nuclear r 99.8 8.4E-19 2.9E-23 126.3 5.8 79 4-84 44-124 (139)
177 3d2w_A TAR DNA-binding protein 99.7 6.1E-18 2.1E-22 112.8 9.3 73 4-82 9-83 (89)
178 2hgm_A HNRPF protein, heteroge 99.7 3.3E-18 1.1E-22 120.8 8.2 76 4-81 40-119 (126)
179 2lcw_A RNA-binding protein FUS 99.6 9.6E-20 3.3E-24 128.2 0.0 82 3-84 4-96 (116)
180 1wf0_A TDP-43, TAR DNA-binding 99.7 4.3E-18 1.5E-22 113.6 7.9 78 3-84 2-79 (88)
181 2bz2_A Negative elongation fac 99.7 8.1E-18 2.8E-22 118.8 9.5 76 4-84 37-112 (121)
182 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.5E-17 5.1E-22 124.3 11.0 135 50-188 11-152 (165)
183 2xs2_A Deleted in azoospermia- 99.7 2.5E-18 8.6E-23 118.1 5.6 78 4-83 7-86 (102)
184 2dnl_A Cytoplasmic polyadenyla 99.7 3.6E-17 1.2E-21 114.5 11.0 74 4-80 6-85 (114)
185 2qfj_A FBP-interacting repress 99.7 2.4E-17 8.3E-22 128.7 10.6 81 4-84 123-206 (216)
186 3md3_A Nuclear and cytoplasmic 99.7 2E-17 6.9E-22 123.6 9.4 78 4-81 85-165 (166)
187 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.7E-22 129.3 9.2 78 5-82 102-180 (213)
188 4fxv_A ELAV-like protein 1; RN 99.7 6.6E-17 2.3E-21 110.0 10.7 77 107-187 18-98 (99)
189 2j8a_A Histone-lysine N-methyl 99.7 1.2E-17 4E-22 115.7 6.9 75 7-81 3-94 (136)
190 3u1l_A PRE-mRNA-splicing facto 99.7 1.5E-17 5.1E-22 129.9 8.1 77 4-83 132-229 (240)
191 2jvr_A Nucleolar protein 3; RN 99.7 3.3E-17 1.1E-21 113.3 8.7 78 106-187 26-104 (111)
192 2lea_A Serine/arginine-rich sp 99.7 2.4E-17 8.3E-22 118.7 7.9 119 46-188 5-127 (135)
193 2dit_A HIV TAT specific factor 99.7 1.1E-16 3.7E-21 111.6 10.8 79 4-83 13-102 (112)
194 2fy1_A RNA-binding motif prote 99.7 3.7E-16 1.3E-20 109.5 13.3 79 106-188 5-86 (116)
195 2g4b_A Splicing factor U2AF 65 99.7 3.4E-17 1.2E-21 123.2 8.3 76 5-80 93-171 (172)
196 2yh0_A Splicing factor U2AF 65 99.7 7E-17 2.4E-21 124.3 9.6 81 4-84 112-195 (198)
197 1fje_B Nucleolin RBD12, protei 99.7 4E-17 1.4E-21 123.2 8.1 77 4-82 97-173 (175)
198 2cjk_A Nuclear polyadenylated 99.7 4.8E-17 1.7E-21 121.8 8.2 77 5-82 86-165 (167)
199 1sjq_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 106.7 10.9 77 106-188 14-92 (105)
200 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.9E-21 119.8 9.3 77 4-80 87-168 (168)
201 3nmr_A Cugbp ELAV-like family 99.7 1E-16 3.5E-21 120.8 8.9 76 5-80 94-174 (175)
202 3v4m_A Splicing factor U2AF 65 99.7 1.6E-16 5.4E-21 109.0 8.6 79 3-81 2-95 (105)
203 1x4a_A Splicing factor, argini 99.7 1.5E-15 5.1E-20 105.4 13.7 82 103-188 17-99 (109)
204 2wbr_A GW182, gawky, LD47780P; 99.7 4.2E-16 1.4E-20 101.1 9.6 73 107-185 6-78 (89)
205 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.3E-21 121.1 9.3 76 6-82 109-186 (193)
206 1l3k_A Heterogeneous nuclear r 99.7 1.8E-16 6E-21 121.8 9.2 80 5-85 103-185 (196)
207 4f25_A Polyadenylate-binding p 99.7 3.6E-16 1.2E-20 109.5 9.9 76 108-187 5-82 (115)
208 1fxl_A Paraneoplastic encephal 99.7 2.3E-16 7.9E-21 117.9 9.2 76 5-80 87-167 (167)
209 2dnm_A SRP46 splicing factor; 99.7 6.7E-16 2.3E-20 106.0 10.7 82 103-188 8-93 (103)
210 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.6E-15 8.7E-20 103.1 13.6 81 104-188 11-93 (103)
211 3ex7_B RNA-binding protein 8A; 99.7 4.6E-16 1.6E-20 110.9 10.0 81 104-188 18-102 (126)
212 3pgw_A U1-A; protein-RNA compl 99.7 4.3E-16 1.5E-20 126.6 10.9 76 4-81 205-281 (282)
213 2d9p_A Polyadenylate-binding p 99.7 8.3E-16 2.9E-20 105.5 10.6 82 103-188 10-93 (103)
214 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-15 4.9E-20 104.1 11.8 80 105-188 9-92 (102)
215 2cq3_A RNA-binding protein 9; 99.7 2.6E-15 8.7E-20 103.1 13.1 82 103-188 10-93 (103)
216 2dgs_A DAZ-associated protein 99.7 1.5E-15 5.1E-20 103.5 11.8 81 103-188 5-89 (99)
217 2dnq_A RNA-binding protein 4B; 99.7 2E-15 7E-20 100.9 12.1 76 106-189 6-81 (90)
218 1whw_A Hypothetical protein ri 99.7 1.7E-15 5.9E-20 103.2 11.9 81 106-190 6-90 (99)
219 3s8s_A Histone-lysine N-methyl 99.7 9.6E-16 3.3E-20 106.2 10.7 76 107-186 5-84 (110)
220 2e5j_A Methenyltetrahydrofolat 99.7 1.7E-15 5.7E-20 102.8 11.6 79 104-187 15-93 (97)
221 2dnz_A Probable RNA-binding pr 99.7 1.9E-15 6.5E-20 102.1 11.5 78 107-188 4-85 (95)
222 2dgt_A RNA-binding protein 30; 99.6 2.5E-15 8.6E-20 100.9 11.8 77 104-188 6-82 (92)
223 1qm9_A Polypyrimidine tract-bi 99.6 4.4E-16 1.5E-20 119.9 9.1 77 4-82 118-196 (198)
224 4a8x_A RNA-binding protein wit 99.6 1.1E-15 3.8E-20 101.8 9.7 76 108-187 4-84 (88)
225 1x5u_A Splicing factor 3B subu 99.6 2.8E-15 9.6E-20 103.2 11.9 82 103-188 10-95 (105)
226 2cpz_A CUG triplet repeat RNA- 99.6 6.6E-15 2.3E-19 103.1 13.8 81 104-188 21-105 (115)
227 1x4h_A RNA-binding protein 28; 99.6 3.4E-15 1.2E-19 103.9 12.2 82 104-189 11-102 (111)
228 2adc_A Polypyrimidine tract-bi 99.6 9.9E-16 3.4E-20 120.6 10.5 76 5-82 150-227 (229)
229 2dgx_A KIAA0430 protein; RRM d 99.6 2.4E-15 8.1E-20 101.8 10.9 79 106-188 7-90 (96)
230 2cpf_A RNA binding motif prote 99.6 2.3E-15 7.7E-20 102.4 10.8 78 107-188 4-88 (98)
231 2dgo_A Cytotoxic granule-assoc 99.6 9.5E-15 3.2E-19 102.3 14.3 82 103-188 10-95 (115)
232 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 103.8 11.7 78 106-189 23-100 (109)
233 1wf1_A RNA-binding protein RAL 99.6 1.8E-15 6E-20 105.2 10.4 73 107-187 26-99 (110)
234 2cph_A RNA binding motif prote 99.6 3.7E-15 1.3E-19 103.0 12.0 82 103-188 10-97 (107)
235 2cq0_A Eukaryotic translation 99.6 3E-15 1E-19 102.7 11.4 81 104-188 11-95 (103)
236 1x4d_A Matrin 3; structural ge 99.6 8.9E-16 3E-20 104.3 8.5 76 106-187 13-91 (102)
237 2dgu_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 101.5 12.5 75 106-188 9-83 (103)
238 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.3E-20 103.6 10.1 80 106-189 10-93 (102)
239 2dgp_A Bruno-like 4, RNA bindi 99.6 3.5E-15 1.2E-19 102.9 11.6 81 104-188 9-96 (106)
240 3tyt_A Heterogeneous nuclear r 99.6 4.5E-16 1.5E-20 120.2 7.6 76 5-80 122-204 (205)
241 3r27_A HnRNP L, heterogeneous 99.6 2.2E-15 7.5E-20 101.3 10.0 75 106-186 19-95 (100)
242 1wi8_A EIF-4B, eukaryotic tran 99.6 3.1E-15 1.1E-19 102.8 11.0 80 103-188 10-94 (104)
243 1why_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 100.9 11.4 77 106-188 15-93 (97)
244 2cq1_A PTB-like protein L; RRM 99.6 5E-15 1.7E-19 100.6 11.7 78 104-187 11-90 (101)
245 2dnp_A RNA-binding protein 14; 99.6 3.2E-15 1.1E-19 99.9 10.6 75 106-188 7-81 (90)
246 2div_A TRNA selenocysteine ass 99.6 5.9E-15 2E-19 100.5 11.9 83 106-188 7-94 (99)
247 1x5t_A Splicing factor 3B subu 99.6 3E-15 1E-19 101.3 10.4 78 107-188 4-86 (96)
248 2hvz_A Splicing factor, argini 99.6 1.9E-15 6.5E-20 103.3 9.5 75 109-188 1-75 (101)
249 2cqc_A Arginine/serine-rich sp 99.6 6.2E-15 2.1E-19 99.6 11.8 79 103-185 10-92 (95)
250 2ad9_A Polypyrimidine tract-bi 99.6 2.8E-15 9.6E-20 104.4 10.1 78 104-187 27-106 (119)
251 2e5h_A Zinc finger CCHC-type a 99.6 3.4E-15 1.2E-19 100.7 10.2 78 103-184 11-92 (94)
252 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.3E-15 1.1E-19 98.8 9.9 75 106-184 5-83 (85)
253 2dng_A Eukaryotic translation 99.6 8.4E-15 2.9E-19 100.5 12.2 80 103-188 10-93 (103)
254 3bs9_A Nucleolysin TIA-1 isofo 99.6 4E-15 1.4E-19 98.8 10.2 76 107-186 5-84 (87)
255 2dgv_A HnRNP M, heterogeneous 99.6 4.5E-15 1.5E-19 99.7 10.5 78 106-187 6-85 (92)
256 2x1f_A MRNA 3'-END-processing 99.6 3.4E-15 1.2E-19 101.1 9.9 76 108-187 2-81 (96)
257 2do0_A HnRNP M, heterogeneous 99.6 1.8E-14 6.2E-19 100.7 13.9 80 104-187 11-93 (114)
258 2jvo_A Nucleolar protein 3; nu 99.6 3.5E-15 1.2E-19 103.1 10.1 76 105-188 28-103 (108)
259 1p27_B RNA-binding protein 8A; 99.6 4.3E-15 1.5E-19 102.5 10.3 78 106-187 21-102 (106)
260 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-14 4E-19 98.3 12.1 76 5-84 9-91 (100)
261 2do4_A Squamous cell carcinoma 99.6 1.3E-14 4.3E-19 99.0 12.4 80 105-188 14-96 (100)
262 1u6f_A Tcubp1, RNA-binding pro 99.6 1.7E-14 5.8E-19 104.5 13.8 82 103-188 37-122 (139)
263 3tht_A Alkylated DNA repair pr 99.6 1.8E-15 6.1E-20 124.4 9.6 77 2-81 14-97 (345)
264 2cpx_A Hypothetical protein FL 99.6 9.4E-15 3.2E-19 102.3 11.9 80 106-189 23-106 (115)
265 2cpd_A Apobec-1 stimulating pr 99.6 1.6E-14 5.4E-19 98.3 12.7 76 105-188 12-89 (99)
266 2ywk_A Putative RNA-binding pr 99.6 5E-15 1.7E-19 100.0 10.0 79 103-185 11-92 (95)
267 2kxn_B Transformer-2 protein h 99.6 4.1E-15 1.4E-19 106.1 10.0 81 104-188 42-126 (129)
268 3md1_A Nuclear and cytoplasmic 99.6 6.8E-15 2.3E-19 96.7 10.4 75 109-187 2-80 (83)
269 2cpj_A Non-POU domain-containi 99.6 7.3E-15 2.5E-19 100.0 10.8 78 105-188 12-89 (99)
270 1wex_A Hypothetical protein (r 99.6 4.4E-15 1.5E-19 101.5 9.6 77 105-187 12-90 (104)
271 2ytc_A PRE-mRNA-splicing facto 99.6 6.8E-15 2.3E-19 97.2 10.2 75 104-184 8-83 (85)
272 2dhg_A TRNA selenocysteine ass 99.6 1.8E-14 6.2E-19 99.0 12.6 81 104-188 5-90 (104)
273 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.1E-19 107.4 12.1 79 106-188 37-119 (156)
274 2cqh_A IGF-II mRNA-binding pro 99.6 4.8E-15 1.7E-19 99.7 9.1 76 107-189 7-84 (93)
275 2la6_A RNA-binding protein FUS 99.6 1.2E-14 4.2E-19 98.9 11.1 73 103-175 8-92 (99)
276 1jmt_A Splicing factor U2AF 35 99.6 3.5E-16 1.2E-20 107.2 3.3 69 12-80 21-103 (104)
277 2cpi_A CCR4-NOT transcription 99.6 4.4E-15 1.5E-19 103.3 9.0 80 105-188 12-101 (111)
278 2la4_A Nuclear and cytoplasmic 99.6 8.3E-15 2.8E-19 100.1 10.2 74 107-186 26-99 (101)
279 2lxi_A RNA-binding protein 10; 99.6 2.1E-15 7E-20 100.9 6.8 76 109-188 2-83 (91)
280 3ue2_A Poly(U)-binding-splicin 99.6 3.4E-15 1.2E-19 104.2 8.1 78 4-81 18-107 (118)
281 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-14 3.9E-19 106.5 11.1 79 107-187 45-123 (164)
282 2cpe_A RNA-binding protein EWS 99.6 1.6E-14 5.5E-19 100.8 11.5 81 104-188 11-103 (113)
283 2khc_A Testis-specific RNP-typ 99.6 1.3E-14 4.4E-19 102.1 11.1 72 103-174 35-110 (118)
284 2dh8_A DAZ-associated protein 99.6 2.4E-14 8.4E-19 98.5 12.2 81 103-188 11-95 (105)
285 2kt5_A RNA and export factor-b 99.6 3.7E-14 1.3E-18 100.6 13.4 80 103-186 30-112 (124)
286 2jrs_A RNA-binding protein 39; 99.6 1.4E-14 4.7E-19 100.1 10.8 79 105-187 23-105 (108)
287 1oo0_B CG8781-PA, drosophila Y 99.6 1.1E-14 3.6E-19 101.2 10.3 81 104-188 22-106 (110)
288 2kvi_A Nuclear polyadenylated 99.6 5.7E-15 1.9E-19 99.9 8.7 74 106-187 8-82 (96)
289 2err_A Ataxin-2-binding protei 99.6 6.6E-15 2.3E-19 102.0 9.2 79 104-186 25-105 (109)
290 2xnq_A Nuclear polyadenylated 99.6 1.2E-14 4.2E-19 98.4 10.2 76 103-186 17-93 (97)
291 2e44_A Insulin-like growth fac 99.6 9.6E-15 3.3E-19 98.8 9.6 78 106-187 13-91 (96)
292 2dnh_A Bruno-like 5, RNA bindi 99.6 2.3E-14 7.7E-19 98.7 11.6 82 106-188 13-97 (105)
293 2fc9_A NCL protein; structure 99.6 5.9E-15 2E-19 100.9 8.6 81 104-188 11-91 (101)
294 3p5t_L Cleavage and polyadenyl 99.6 3.7E-15 1.3E-19 99.6 7.2 75 109-187 2-82 (90)
295 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.4E-19 99.4 10.9 73 103-175 24-99 (107)
296 2m2b_A RNA-binding protein 10; 99.6 1.4E-14 4.7E-19 103.9 10.6 78 106-188 21-108 (131)
297 2lkz_A RNA-binding protein 5; 99.6 4.7E-15 1.6E-19 99.7 7.6 77 106-186 7-93 (95)
298 3s6e_A RNA-binding protein 39; 99.6 9.4E-15 3.2E-19 101.3 9.1 77 4-81 5-91 (114)
299 1whx_A Hypothetical protein ri 99.6 4.6E-15 1.6E-19 103.1 7.5 74 107-186 9-82 (111)
300 1x4e_A RNA binding motif, sing 99.6 2.8E-15 9.7E-20 99.1 6.1 68 107-174 4-75 (85)
301 1s79_A Lupus LA protein; RRM, 99.6 1.1E-14 3.8E-19 99.5 9.0 70 106-176 9-81 (103)
302 1x4b_A Heterogeneous nuclear r 99.6 3.4E-14 1.2E-18 99.6 11.6 79 106-189 25-107 (116)
303 2a3j_A U1 small nuclear ribonu 99.6 1.7E-14 5.9E-19 102.2 10.1 78 106-187 27-109 (127)
304 2cqp_A RNA-binding protein 12; 99.6 1.3E-14 4.4E-19 98.6 9.2 78 105-186 12-93 (98)
305 1x4f_A Matrin 3; structural ge 99.6 1.1E-14 3.8E-19 100.3 8.7 77 105-187 22-101 (112)
306 2dgw_A Probable RNA-binding pr 99.6 3.1E-14 1.1E-18 95.3 10.8 78 104-187 6-86 (91)
307 2cqd_A RNA-binding region cont 99.6 8.3E-14 2.8E-18 97.6 13.0 80 103-187 12-95 (116)
308 1x5p_A Negative elongation fac 99.6 8.7E-14 3E-18 94.2 12.5 76 106-189 13-88 (97)
309 3lqv_A PRE-mRNA branch site pr 99.6 2.5E-14 8.7E-19 100.1 9.9 77 106-186 6-83 (115)
310 2e5i_A Heterogeneous nuclear r 99.6 1.4E-13 4.6E-18 96.7 13.5 75 109-187 26-101 (124)
311 3ucg_A Polyadenylate-binding p 99.6 2.9E-14 9.9E-19 95.0 9.6 75 108-187 6-84 (89)
312 2krb_A Eukaryotic translation 99.6 8.1E-15 2.8E-19 95.9 6.6 66 109-174 2-75 (81)
313 2e5g_A U6 snRNA-specific termi 99.6 5.8E-14 2E-18 94.5 11.0 73 107-186 7-80 (94)
314 3s7r_A Heterogeneous nuclear r 99.6 3.2E-14 1.1E-18 94.4 9.6 69 105-174 8-80 (87)
315 3sde_A Paraspeckle component 1 99.6 1.2E-14 4.2E-19 116.6 9.0 80 4-83 94-179 (261)
316 2cq2_A Hypothetical protein LO 99.5 1.5E-14 5.3E-19 99.6 8.2 64 106-171 23-88 (114)
317 3n9u_C Cleavage and polyadenyl 99.5 3.8E-14 1.3E-18 104.4 10.4 75 107-185 54-134 (156)
318 1p1t_A Cleavage stimulation fa 99.5 2.1E-14 7.1E-19 98.7 8.5 77 107-187 7-87 (104)
319 2cqg_A TDP-43, TAR DNA-binding 99.5 2E-13 7E-18 93.5 13.3 79 104-188 11-93 (103)
320 2cq4_A RNA binding motif prote 99.5 1.1E-14 3.9E-19 101.7 7.1 76 106-186 23-102 (114)
321 2nlw_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 97.6 9.1 77 107-186 14-98 (105)
322 3ns6_A Eukaryotic translation 99.5 2E-14 6.7E-19 98.0 7.7 69 107-175 5-84 (100)
323 2diu_A KIAA0430 protein; struc 99.5 5.1E-14 1.7E-18 92.2 9.3 71 108-188 9-84 (96)
324 2jwn_A Embryonic polyadenylate 99.5 4.8E-14 1.6E-18 100.1 10.1 76 107-187 35-114 (124)
325 2hgn_A Heterogeneous nuclear r 99.5 5E-15 1.7E-19 106.5 4.9 117 46-186 2-121 (139)
326 1nu4_A U1A RNA binding domain; 99.5 1.8E-14 6.1E-19 97.7 7.4 80 104-187 4-88 (97)
327 2ek1_A RNA-binding protein 12; 99.5 1.7E-14 5.7E-19 97.4 7.1 75 106-184 13-91 (95)
328 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.9E-15 3.1E-19 99.7 5.8 77 104-186 15-96 (100)
329 1wg5_A Heterogeneous nuclear r 99.5 6E-14 2E-18 96.3 9.9 78 103-185 10-91 (104)
330 2rs2_A Musashi-1, RNA-binding 99.5 4.4E-14 1.5E-18 97.8 9.3 78 106-188 23-104 (109)
331 2mss_A Protein (musashi1); RNA 99.5 1.8E-14 6.3E-19 92.7 6.7 65 110-175 1-69 (75)
332 1fjc_A Nucleolin RBD2, protein 99.5 2.1E-14 7.3E-19 97.1 7.1 79 105-188 13-91 (96)
333 2dnn_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 97.1 9.0 75 105-185 13-90 (109)
334 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.1E-13 3.7E-18 100.4 11.3 72 103-174 58-133 (140)
335 1x5o_A RNA binding motif, sing 99.5 1.7E-13 5.7E-18 95.8 11.6 81 106-186 23-110 (114)
336 1wez_A HnRNP H', FTP-3, hetero 99.5 7.9E-14 2.7E-18 95.2 9.6 77 103-185 10-89 (102)
337 3zzy_A Polypyrimidine tract-bi 99.5 9.8E-14 3.3E-18 97.8 10.1 78 107-187 27-105 (130)
338 2dis_A Unnamed protein product 99.5 8.7E-14 3E-18 96.4 9.6 78 107-188 7-92 (109)
339 2cpy_A RNA-binding protein 12; 99.5 4.4E-14 1.5E-18 98.6 7.8 75 106-185 13-91 (114)
340 2f3j_A RNA and export factor b 99.5 2.1E-13 7.1E-18 102.6 11.9 73 104-176 84-159 (177)
341 2hzc_A Splicing factor U2AF 65 99.5 9.6E-14 3.3E-18 92.0 9.0 67 106-175 4-81 (87)
342 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.9E-14 9.9E-19 92.3 6.0 66 109-175 1-70 (77)
343 3d2w_A TAR DNA-binding protein 99.5 8.8E-14 3E-18 92.5 8.2 77 104-187 7-83 (89)
344 1wg1_A KIAA1579 protein, homol 99.5 4.4E-14 1.5E-18 93.9 6.5 73 107-186 4-76 (88)
345 2hgl_A HNRPF protein, heteroge 99.5 6.8E-14 2.3E-18 100.3 7.8 77 103-184 39-121 (136)
346 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-13 4.4E-18 94.1 8.9 76 107-188 16-95 (101)
347 2ki2_A SS-DNA binding protein 99.5 2.1E-14 7.3E-19 95.9 4.9 73 109-186 2-78 (90)
348 2fc8_A NCL protein; structure 99.5 3.1E-13 1E-17 92.4 10.7 79 104-189 11-93 (102)
349 2db1_A Heterogeneous nuclear r 99.5 1.2E-13 4.3E-18 96.9 8.9 77 103-184 12-94 (118)
350 1wel_A RNA-binding protein 12; 99.5 7.5E-14 2.6E-18 99.0 7.5 71 104-175 21-95 (124)
351 2lmi_A GRSF-1, G-rich sequence 99.5 5.3E-14 1.8E-18 97.1 6.1 71 104-175 7-83 (107)
352 3egn_A RNA-binding protein 40; 99.5 1.9E-13 6.6E-18 99.4 9.3 79 106-188 43-130 (143)
353 3q2s_C Cleavage and polyadenyl 99.5 1.2E-13 4.2E-18 108.2 8.7 74 107-184 67-146 (229)
354 1iqt_A AUF1, heterogeneous nuc 99.5 8.6E-14 2.9E-18 89.5 5.8 65 110-175 1-69 (75)
355 2bz2_A Negative elongation fac 99.5 3.6E-13 1.2E-17 94.8 9.3 75 106-188 37-111 (121)
356 1wf0_A TDP-43, TAR DNA-binding 99.4 1.7E-13 5.7E-18 91.1 6.2 73 107-188 4-78 (88)
357 2dha_A FLJ20171 protein; RRM d 99.4 3.1E-13 1.1E-17 95.1 7.7 69 106-175 21-96 (123)
358 2lcw_A RNA-binding protein FUS 99.1 1.1E-14 3.9E-19 102.0 0.0 79 106-188 5-95 (116)
359 2hgm_A HNRPF protein, heteroge 99.4 2.9E-13 1E-17 95.4 7.0 70 104-175 38-112 (126)
360 1owx_A Lupus LA protein, SS-B, 99.4 1.1E-12 3.8E-17 90.9 9.6 75 4-81 16-94 (121)
361 2xs2_A Deleted in azoospermia- 99.4 7.6E-13 2.6E-17 90.4 7.4 67 106-174 7-76 (102)
362 2dnl_A Cytoplasmic polyadenyla 99.4 5.2E-13 1.8E-17 93.2 6.2 64 107-171 7-80 (114)
363 2j8a_A Histone-lysine N-methyl 99.4 1.7E-12 6E-17 89.9 8.4 73 109-185 3-93 (136)
364 2dit_A HIV TAT specific factor 99.4 6.7E-12 2.3E-16 87.2 11.5 78 106-187 13-101 (112)
365 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-12 5.3E-17 101.6 7.8 77 105-187 131-228 (240)
366 2pe8_A Splicing factor 45; RRM 99.4 5.2E-12 1.8E-16 86.4 9.5 70 106-175 6-85 (105)
367 2dnr_A Synaptojanin-1; RRM dom 99.3 5.2E-12 1.8E-16 81.9 8.5 75 3-83 4-86 (91)
368 2voo_A Lupus LA protein; RNA-b 99.3 2E-11 6.9E-16 93.1 13.2 117 54-185 63-184 (193)
369 3tht_A Alkylated DNA repair pr 99.3 9.3E-12 3.2E-16 102.4 7.6 66 105-172 15-82 (345)
370 3v4m_A Splicing factor U2AF 65 99.2 3.4E-11 1.2E-15 82.3 7.6 70 107-176 4-89 (105)
371 3s6e_A RNA-binding protein 39; 99.2 9.5E-11 3.3E-15 81.1 8.9 71 107-177 6-86 (114)
372 3ue2_A Poly(U)-binding-splicin 99.2 8.1E-11 2.8E-15 82.0 7.9 71 107-177 19-102 (118)
373 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.3E-10 8E-15 77.1 9.9 65 117-188 26-90 (100)
374 1ufw_A Synaptojanin 2; RNP dom 99.2 9.1E-11 3.1E-15 76.4 7.0 72 3-80 12-92 (95)
375 1owx_A Lupus LA protein, SS-B, 99.2 1.5E-10 5E-15 80.2 8.2 71 103-175 13-87 (121)
376 1jmt_A Splicing factor U2AF 35 99.1 1.5E-11 5.2E-16 83.9 3.0 63 113-175 20-97 (104)
377 3dxb_A Thioredoxin N-terminall 99.0 4.6E-10 1.6E-14 87.6 7.6 76 6-81 124-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 3.8E-09 1.3E-13 68.5 6.5 70 107-185 6-83 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2.3E-08 7.9E-13 66.4 8.8 71 5-78 20-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 2.9E-08 1E-12 64.6 7.4 69 107-184 14-91 (95)
381 1wey_A Calcipressin 1; structu 98.7 2.4E-07 8.2E-12 61.4 9.6 76 4-82 3-83 (104)
382 2dhx_A Poly (ADP-ribose) polym 98.6 5.8E-07 2E-11 59.3 10.8 88 5-121 7-99 (104)
383 3dxb_A Thioredoxin N-terminall 98.4 6E-07 2.1E-11 69.8 7.4 58 120-177 141-206 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.4 3.5E-06 1.2E-10 56.0 8.7 67 108-176 21-92 (117)
385 1uw4_A UPF3X; nonsense mediate 98.2 9.8E-06 3.4E-10 52.8 8.7 76 7-82 2-87 (91)
386 1wwh_A Nucleoporin 35, nucleop 98.2 1.1E-05 3.9E-10 55.0 8.1 71 5-80 23-94 (119)
387 1whv_A Poly(A)-specific ribonu 98.0 2.5E-05 8.6E-10 50.8 6.7 54 6-65 16-69 (100)
388 3ctr_A Poly(A)-specific ribonu 97.8 3.1E-05 1E-09 50.6 5.0 54 7-66 7-60 (101)
389 1whv_A Poly(A)-specific ribonu 97.7 0.00021 7.4E-09 46.5 7.6 56 107-167 15-70 (100)
390 2l08_A Regulator of nonsense t 97.7 0.00013 4.6E-09 47.7 6.5 76 6-81 9-94 (97)
391 1uw4_A UPF3X; nonsense mediate 97.7 0.00035 1.2E-08 45.5 8.3 69 109-177 2-76 (91)
392 1wey_A Calcipressin 1; structu 97.6 0.00018 6.1E-09 47.7 6.4 69 109-179 6-79 (104)
393 3p3d_A Nucleoporin 53; structu 97.5 0.00014 4.9E-09 50.3 5.3 75 5-81 6-97 (132)
394 1wwh_A Nucleoporin 35, nucleop 97.4 0.00083 2.8E-08 45.8 7.6 65 106-174 22-86 (119)
395 3ctr_A Poly(A)-specific ribonu 97.3 0.00024 8.3E-09 46.4 4.0 54 109-167 7-60 (101)
396 2dhx_A Poly (ADP-ribose) polym 97.2 0.0026 8.8E-08 42.0 8.0 54 108-165 8-66 (104)
397 3pq1_A Poly(A) RNA polymerase; 97.0 0.00033 1.1E-08 59.7 3.3 56 5-63 52-107 (464)
398 2l08_A Regulator of nonsense t 96.7 0.0017 5.9E-08 42.5 4.0 71 108-178 9-85 (97)
399 3p3d_A Nucleoporin 53; structu 96.0 0.0095 3.2E-07 41.2 4.7 66 107-174 6-89 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.3 0.012 4E-07 50.3 3.5 55 108-164 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.4 0.094 3.2E-06 45.6 7.1 54 7-66 441-494 (507)
402 2g0c_A ATP-dependent RNA helic 92.5 0.43 1.5E-05 29.5 6.1 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 88.7 1.3 4.3E-05 38.5 7.4 56 108-168 440-495 (507)
404 4eyt_A Telomerase associated p 86.6 4.4 0.00015 25.6 8.3 69 4-79 10-78 (129)
405 4e8u_A Putative uncharacterize 79.0 3.2 0.00011 30.1 4.7 56 8-63 14-81 (172)
406 4eyt_A Telomerase associated p 70.4 17 0.0006 22.9 7.7 56 107-166 11-66 (129)
407 3ts2_A Protein LIN-28 homolog 55.7 1.8 6.2E-05 30.7 -0.7 28 21-53 2-29 (148)
408 3j21_T 50S ribosomal protein L 52.3 41 0.0014 21.2 6.5 57 110-166 24-83 (86)
409 2e5p_A Protein PHF1, PHD finge 49.6 8.4 0.00029 22.8 1.6 20 31-55 28-47 (68)
410 3lpe_A Putative transcription 49.3 48 0.0016 21.0 6.4 33 33-67 40-72 (92)
411 3u5e_X 60S ribosomal protein L 44.3 73 0.0025 22.2 6.0 57 110-166 80-139 (142)
412 2m0o_A PHD finger protein 1; t 44.2 11 0.00038 23.0 1.6 20 31-55 45-64 (79)
413 3h7h_B Transcription elongatio 43.2 34 0.0012 22.5 4.1 35 32-68 40-74 (106)
414 4a17_R RPL23A, 60S ribosomal p 41.9 80 0.0027 22.2 5.9 57 110-166 88-147 (150)
415 3j21_T 50S ribosomal protein L 41.5 64 0.0022 20.3 5.5 55 9-63 25-81 (86)
416 2eqj_A Metal-response element- 39.8 15 0.00052 21.8 1.7 13 43-55 39-51 (66)
417 3fut_A Dimethyladenosine trans 39.2 28 0.00097 27.2 3.8 30 6-36 110-139 (271)
418 2cs4_A Protein C12ORF2; GTP bi 37.5 22 0.00076 22.9 2.4 20 10-29 20-39 (95)
419 1vq8_S 50S ribosomal protein L 36.6 64 0.0022 20.2 4.4 55 9-63 24-80 (85)
420 3uzu_A Ribosomal RNA small sub 35.7 14 0.00049 29.0 1.6 31 6-36 114-144 (279)
421 1nz8_A Transcription antitermi 35.0 98 0.0034 20.5 6.5 24 44-67 61-89 (119)
422 3swz_A Steroid 17-alpha-hydrox 34.3 65 0.0022 27.1 5.6 60 8-74 16-79 (494)
423 3iz5_X 60S ribosomal protein L 33.5 83 0.0028 22.2 4.9 57 110-166 90-149 (152)
424 2od0_A Hypothetical protein VP 33.2 42 0.0014 21.8 3.3 22 18-39 4-25 (105)
425 2f06_A Conserved hypothetical 32.5 1.2E+02 0.004 20.6 14.0 50 121-171 85-135 (144)
426 4hcz_A PHD finger protein 1; p 31.3 25 0.00085 20.2 1.6 11 45-55 31-41 (58)
427 2ns6_A Mobilization protein A; 31.1 84 0.0029 23.0 5.0 45 11-55 75-127 (185)
428 1eij_A Hypothetical protein MT 29.0 42 0.0014 20.8 2.5 20 12-31 50-69 (80)
429 1qyr_A KSGA, high level kasuga 26.6 46 0.0016 25.6 3.0 24 7-30 91-114 (252)
430 3p8b_B Transcription antitermi 26.5 58 0.002 22.8 3.3 34 33-68 33-66 (152)
431 1fme_A FSD-EY peptide; beta-BE 26.5 45 0.0015 15.2 1.7 12 19-30 14-25 (28)
432 3fry_A Probable copper-exporti 26.3 99 0.0034 17.8 5.5 56 6-65 6-61 (73)
433 3tbg_A Cytochrome P450 2D6; mo 25.6 61 0.0021 27.0 3.9 56 10-72 20-78 (479)
434 3ftd_A Dimethyladenosine trans 25.2 41 0.0014 25.8 2.5 25 7-31 96-120 (249)
435 3tqs_A Ribosomal RNA small sub 25.1 21 0.00071 27.7 0.8 29 8-36 98-126 (255)
436 1i4w_A Mitochondrial replicati 24.9 49 0.0017 27.0 3.0 22 8-29 144-165 (353)
437 4bby_A Alkyldihydroxyacetoneph 24.9 49 0.0017 29.6 3.3 53 13-65 350-408 (658)
438 2zkr_s 60S ribosomal protein L 24.1 1.9E+02 0.0066 20.4 6.2 56 110-165 94-152 (156)
439 2nn4_A Hypothetical protein YQ 23.5 32 0.0011 20.8 1.2 18 19-36 4-21 (72)
440 3ezj_A General secretion pathw 23.4 65 0.0022 24.5 3.3 115 15-132 10-133 (241)
441 2w7a_A LINE-1 ORF1P; RNA-bindi 23.3 1.4E+02 0.0049 19.3 4.4 73 6-78 3-98 (100)
442 2fh0_A Hypothetical 16.0 kDa p 23.3 49 0.0017 20.6 2.0 19 12-30 48-66 (81)
443 1ytr_A Bacteriocin plantaricin 22.9 50 0.0017 14.8 1.5 12 20-31 14-25 (26)
444 1ik9_C DNA ligase IV; DNA END 22.9 64 0.0022 16.5 2.2 16 15-30 19-34 (37)
445 2ko4_A Mediator of RNA polymer 22.8 48 0.0016 20.4 1.9 19 113-131 29-48 (81)
446 4a17_R RPL23A, 60S ribosomal p 22.5 1.3E+02 0.0045 21.1 4.3 54 10-63 90-145 (150)
447 2nzc_A Hypothetical protein; s 22.3 1E+02 0.0035 19.4 3.4 61 18-80 19-82 (86)
448 2exu_A Transcription initiatio 22.2 73 0.0025 23.7 3.2 34 33-68 139-172 (200)
449 2zkr_s 60S ribosomal protein L 22.0 1.3E+02 0.0046 21.2 4.4 55 10-64 96-152 (156)
450 2cu1_A Mitogen-activated prote 21.8 1.7E+02 0.0058 18.9 6.2 65 13-83 23-88 (103)
451 2e7g_A Putative ribosome-bindi 20.9 1.1E+02 0.0037 20.8 3.7 33 132-164 43-76 (129)
452 3d53_A Inorganic pyrophosphata 20.8 1.9E+02 0.0067 20.8 5.1 38 19-64 131-168 (173)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.4e-34 Score=224.22 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=143.5
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~-~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
-++++|||+||| +.+|+++|+++|++||.|..|+|..+ .+|||||+|.+.++|+.|+..|||..|.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 89999999999999999999999654 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCC--CC------CCCCC---C-------CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCc--eEEEEEe
Q 024221 83 GRGRSSSDR--HS------SHSSG---R-------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 142 (270)
Q Consensus 83 ~~~~~~~~~--~~------~~~~~---~-------~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i--~~~~~~~ 142 (270)
....+.... .. ..... . .......+..+|||+|||+.+++++|.++|++||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 443211100 00 00000 0 000112345789999999999999999999999999 8898887
Q ss_pred cC--CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 143 ~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
+. ..++|||+|.+.++|.+|+..|||..+.|.....++.|+
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 64 347999999999999999999999999997666565554
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.6e-35 Score=229.74 Aligned_cols=163 Identities=23% Similarity=0.353 Sum_probs=141.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.|++||||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4788999999999999999999999999999999954 5778999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--CCEEEEEecCHHH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDD 158 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~ 158 (270)
...... ......+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++
T Consensus 93 ~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSL-----------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHH-----------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cccccc-----------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 643211 111335899999999999999999999999999999988753 4699999999999
Q ss_pred HHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 159 MKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 159 a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
|.+|++.|||..++| ..|.|.....
T Consensus 156 a~~Ai~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 156 AERAIEKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHhCCCEECC----EEEEEEEcCC
Confidence 999999999999999 5666665543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=212.08 Aligned_cols=158 Identities=25% Similarity=0.411 Sum_probs=139.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
++|||+|||+++|+++|.++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999954 46678999999999999999998899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHH
Q 024221 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 160 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~ 160 (270)
. ....+..+|+|+|||..+++++|.++|++||.|..+.+..+.. .|+|||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 2223457999999999999999999999999999999998743 359999999999999
Q ss_pred HHHHHcCCcccccceeeeeeeeecc
Q 024221 161 HAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 161 ~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
+|+..|||..++| ..|.+...
T Consensus 144 ~A~~~l~g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 144 NAMDSMQGQDLNG----RPLRINWA 164 (166)
T ss_dssp HHHHHHTTCEETT----EECEEEES
T ss_pred HHHHHhCCCccCC----cEEEEEec
Confidence 9999999999999 55555543
No 4
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.5e-32 Score=224.15 Aligned_cols=178 Identities=19% Similarity=0.266 Sum_probs=144.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC---C---C-------------------------------------------------------------
Q 024221 79 LAHGGRGRSSS---D---R------------------------------------------------------------- 91 (270)
Q Consensus 79 ~~~~~~~~~~~---~---~------------------------------------------------------------- 91 (270)
++......... . .
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98754320000 0 0
Q ss_pred -CCCCCCCC------------------------CCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC
Q 024221 92 -HSSHSSGR------------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (270)
Q Consensus 92 -~~~~~~~~------------------------~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~ 146 (270)
+......+ .......+..+|||+|||..+++++|.++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 00000000 000122355789999999999999999999999999999999765 4
Q ss_pred CEEEEEecCHHHHHHHHHHcCCcccc-cceeeeeeeeecc
Q 024221 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 185 (270)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~~~~~ 185 (270)
+||||+|.+.++|.+|+..|||..+. | ..|.|.+.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 69999999999999999999999999 7 55555543
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6e-33 Score=208.96 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=137.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999954 56778999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (270)
.... .....+|+|+|||..+++++|.++|++||.|..+.+..+.. .++|||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 22346899999999999999999999999999999988753 369999999999
Q ss_pred HHHHHHHHcCCcccccce
Q 024221 158 DMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~ 175 (270)
+|.+|+..|||..+.|+.
T Consensus 142 ~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHHhcCCccCCCc
Confidence 999999999999999854
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5e-33 Score=214.95 Aligned_cols=166 Identities=14% Similarity=0.288 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999954 46788999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~ 156 (270)
........ ........+|||+|||+.+++++|.++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 75432211 01223457999999999999999999999999999999998753 35999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
++|.+|+.. ++..++| ..|.|....++
T Consensus 157 ~~A~~A~~~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHC-SCCEETT----EECEEEECC--
T ss_pred HHHHHHHHh-CCcEECC----EEEEEEecCCh
Confidence 999999986 7999999 55666665544
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.1e-32 Score=207.88 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=136.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999843 57788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (270)
.... .....+|+|+|||..+++++|.++|++||.|..+.+..+.. .++|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4331 12456999999999999999999999999999999998763 259999999999
Q ss_pred HHHHHHHHcCCccccc
Q 024221 158 DMKHAIKKLDDSEFRN 173 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g 173 (270)
+|.+|+..|||..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999987
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.7e-32 Score=215.75 Aligned_cols=177 Identities=17% Similarity=0.249 Sum_probs=142.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++++|||+|||+ ++|+++|+++|+.||+|..|.|..+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997554 7899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--------------C--CCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecC
Q 024221 82 GGRGRSSSDRHSS--------------H--SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (270)
Q Consensus 82 ~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~ 144 (270)
............. . ...........+..+|||+|||..+++++|.++|.+|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 6532211110000 0 00000011223568999999999999999999999999 9999999654
Q ss_pred CCCEEEEEecCHHHHHHHHHHcCCcccc-cceeeeeeeeeccc
Q 024221 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREYD 186 (270)
Q Consensus 145 ~~~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~~~~~~ 186 (270)
..++|||+|.+.++|.+|+..|||..+. | ..+.+...+
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~ 226 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSK 226 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEec
Confidence 3569999999999999999999999998 7 455555443
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.2e-31 Score=207.51 Aligned_cols=177 Identities=22% Similarity=0.386 Sum_probs=142.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
..+++|||+|||+++|+++|.++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 66666654 66899999999999999999 699999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCC-CCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CC
Q 024221 73 HRLRVELAHGGRGRSSSDRHSS-HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 147 (270)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~ 147 (270)
+.|.|.++.............. ...............+|||+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 9999999876543322111111 111111122335668999999999999999999999999999999998853 35
Q ss_pred EEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
||||+|.+.++|..|+..|||..++| ..+.|....+.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999 66677665543
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4.6e-32 Score=209.91 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 5 ASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+++|||+|||+ .+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 479999999999 99999999999999999999996554 789999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCC--------------C--CCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCC
Q 024221 84 RGRSSSDRHSS--------------H--SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG 146 (270)
Q Consensus 84 ~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~ 146 (270)
........... . ...........+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32211100000 0 00001111224578999999999999999999999999 99999997643 5
Q ss_pred CEEEEEecCHHHHHHHHHHcCCcccc-cceeeeeeeeecc
Q 024221 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 185 (270)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~~~~~ 185 (270)
++|||+|.+.++|.+|+..|||..++ | ..+.+...
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 194 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFS 194 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSC----CSCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCC----CeEEEEee
Confidence 79999999999999999999999998 7 44554443
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8.7e-32 Score=211.11 Aligned_cols=171 Identities=20% Similarity=0.326 Sum_probs=140.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999954 57789999999999999999999999999999999998775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHH
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (270)
.......... ..........+|||+|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.+
T Consensus 107 ~~~~~~~~~~--------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPIID--------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHHH--------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhhh--------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 3221000000 0000112346999999999999999999999999999999998853 469999999999
Q ss_pred HHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 158 DMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
+|.+|+..|||..++| ..|.|.....
T Consensus 179 ~A~~A~~~l~g~~~~g----~~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGG----QYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSS----SBCEEEECSS
T ss_pred HHHHHHHHccCCEeCC----cEEEEEEecC
Confidence 9999999999999999 5566665544
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.9e-32 Score=206.85 Aligned_cols=151 Identities=17% Similarity=0.324 Sum_probs=132.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC---C--CCCceEEEEecCHHHHHHHHHhcCCcccC---CceEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---P--RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~i~ 76 (270)
++++|||+|||+++|+++|+++|++||+|..|.+..+ + .++|||||+|.+.++|.+|+..|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999543 2 67899999999999999999999998876 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEe
Q 024221 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDY 153 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f 153 (270)
+.++..... ......+|||+|||+.+++++|.++|++||.|..+.+..+.. .+||||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 887764331 223557999999999999999999999999999999998854 35999999
Q ss_pred cCHHHHHHHHHHcCCccccc
Q 024221 154 TNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g 173 (270)
.+.++|.+|+..|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999987764
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.1e-31 Score=203.11 Aligned_cols=153 Identities=23% Similarity=0.447 Sum_probs=134.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+++++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 468999999999999999999999999 6 77777775 55899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCE
Q 024221 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTT 148 (270)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~ 148 (270)
+.|.|.++..... .....+|+|+|||..+++++|.++|++||.|..+.+..+.. .|+
T Consensus 78 ~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998754321 12357999999999999999999999999999999998853 359
Q ss_pred EEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
|||+|.+.++|.+|+..|||..++| ..+.|.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 169 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQ 169 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETT----EECEEE
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 9999999999999999999999999 445544
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.8e-33 Score=211.26 Aligned_cols=162 Identities=17% Similarity=0.244 Sum_probs=138.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999998766333 3467889999999999999999995 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~ 160 (270)
..... .......+|||+|||+.+++++|.++|++||.|..+ .......+||||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 75322 222356799999999999999999999999998877 333456689999999999999
Q ss_pred HHHHHcCCcccccceeeeeeeeecccc
Q 024221 161 HAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 161 ~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
+|+..|||..+.| ..|.|....+
T Consensus 151 ~A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 151 KNLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHHhCCCEECC----eEEEEEecCC
Confidence 9999999999999 5566665543
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.3e-32 Score=204.99 Aligned_cols=158 Identities=18% Similarity=0.375 Sum_probs=137.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 578899999999999999999994 57899999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 156 (270)
.... ......+|||+|||+.+++++|.++|++||.|..+.+..+. ..|||||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5321 11234689999999999999999999999999999998764 346999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
++|.+|++ +++..++| ..|.|....+
T Consensus 140 ~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 99999998 89999999 5566665543
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.9e-30 Score=209.06 Aligned_cols=155 Identities=26% Similarity=0.369 Sum_probs=134.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (270)
++++|||+|||+++|+++|.++|+.||.|..|.+. ..+|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 56799999999999999999999999999999996 4589999999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHH
Q 024221 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 161 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~ 161 (270)
..+|||+|||+.+++++|.++|..||.|..|.++.+.. .|||||+|.+.++|..
T Consensus 96 -----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 -----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp -----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred -----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 35899999999999999999999999999999998844 3599999999999999
Q ss_pred HHHHcCCcccccceeeeeeeeecccc
Q 024221 162 AIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 162 a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
|+..||+..+........+.|.....
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHhcCCeEEecCCCceEEEeeccc
Confidence 99999554443111125566655443
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.7e-30 Score=212.90 Aligned_cols=166 Identities=15% Similarity=0.246 Sum_probs=138.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++++|||+|||+.+|+++|.++|+.|| +|..|.+.. .+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999954 35789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEecCC-----CCEEEEEecC
Q 024221 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~~ 155 (270)
+....... ........+|||+|||+. +++++|.++|++||.|..+.++.+.. .+||||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432111 122345679999999999 99999999999999999999987654 5799999999
Q ss_pred HHHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
.++|.+|+ .|||..+.| ..|.|....+
T Consensus 264 ~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 99999999 999999999 6666665543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.3e-30 Score=209.18 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=144.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999999999853 5778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCC-CHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCH
Q 024221 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNY 156 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~ 156 (270)
...... .......+|||+|||+.+ ++++|.++|+.||.|..+.++.+.. .++|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 754321 122345799999999995 9999999999999999999988754 35999999999
Q ss_pred HHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
++|.+|+..|||..++| ..+.|....+.
T Consensus 237 ~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHHHHHhCCCccCC----eEEEEEEecCC
Confidence 99999999999999999 56666665543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=9.5e-30 Score=207.70 Aligned_cols=151 Identities=24% Similarity=0.320 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3689999999999999999999999999 999988 4678999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHH
Q 024221 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDM 159 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a 159 (270)
...+|||+|||+.+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 235999999999999999999999999999999988754 35999999999999
Q ss_pred HHHHHHcCCcccccceeeeeeeeecccc
Q 024221 160 KHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 160 ~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
..|+..|+|..+.| ..+.+.....
T Consensus 151 ~~A~~~l~~~~~~g----~~i~v~~a~~ 174 (284)
T 3smz_A 151 ARAKSDLLGKPLGP----RTLYVHWTDA 174 (284)
T ss_dssp HHHHHHHTTCEETT----EECEEEECCG
T ss_pred HHHHHHhCCCEeCC----cEEEEEECCC
Confidence 99999999999999 5566655443
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.3e-30 Score=209.20 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=132.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 57899999999999999999999999999999999653 3358999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecC---CCCEEEEEecCHHH
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~---~~~~~fv~f~~~~~ 158 (270)
..+|||+|||+.+++++|.++|..|| .|..+.++.+. ..+||||+|.+.++
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 36999999999999999999999999 99999998765 55799999999999
Q ss_pred HHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 159 MKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 159 a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
|..|+..|+|..+.| ..+.+....
T Consensus 172 a~~A~~~l~g~~~~g----~~l~v~~a~ 195 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEG----YTLVTKVSN 195 (292)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECC
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECC
Confidence 999999999999999 556665544
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=4.5e-25 Score=155.16 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+++|||+|||+++|+++|+++|++||+|..|.|.. .+.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999954 3456899999999999999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHH
Q 024221 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~ 124 (270)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~-----------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE-----------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc-----------cccccCCCCceEeCCCCCCccccc
Confidence 321110 111223345799999999998763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.2e-22 Score=173.68 Aligned_cols=81 Identities=36% Similarity=0.644 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999953 6788999999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8544
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=6.2e-23 Score=175.53 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=98.1
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEe----ec-CCCCCceE-----EEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 13 NLPGDIREREVEDLFYKYGPIAHIDL----KI-PPRPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~~~~----~~-~~~~~g~a-----fV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.||++ |.+||.++|+|..|.. +. .....+|+ |+.|.+...+..++..++.....+..........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45655 6899999999988733 11 11233444 7788776666555544433322211000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHH
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 158 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~ 158 (270)
.... ..................+..+|||+|||+.+|+++|.++|.+||.|..|.|+.+. ..+||||+|.+.++
T Consensus 79 ~~~~--~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQEV--ETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HHHH--HHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 0000 00000000000011222345799999999999999999999999999999998764 35699999999999
Q ss_pred HHHHHHHcCCccccccee
Q 024221 159 MKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 159 a~~a~~~l~g~~~~g~~~ 176 (270)
|..||..|||..|.|..+
T Consensus 157 A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRV 174 (437)
T ss_pred HHHHHHHcCCCEECCEEE
Confidence 999999999999999443
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=139.86 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999999999999999954 57889999999999999999999999999999999999986
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.88 E-value=4.5e-23 Score=145.17 Aligned_cols=105 Identities=30% Similarity=0.468 Sum_probs=94.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++++|||+|||+.+|+++|.++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhcCC
Q 024221 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~ 134 (270)
... ..+++...++++|.++|++||.
T Consensus 85 ~~~---------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRA---------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHH---------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred Chh---------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 221 1456677789999999999984
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=136.60 Aligned_cols=100 Identities=43% Similarity=0.640 Sum_probs=82.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (270)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999765 7899999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccEEEecCCC
Q 024221 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 117 (270)
....... ........|||+||+
T Consensus 79 ~~~~~~~---------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPP---------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCC---------CSCCCCSCCCSCCCC
T ss_pred ccCCCCC---------ccccCCCceecCCCC
Confidence 2111111 111235689999986
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.87 E-value=9.7e-22 Score=127.59 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
-.+.-|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.++++|.+|+..|||..|.|+.|.|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3577899999999999999999999999999999973 7999999999999999999999999999999999987
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=135.42 Aligned_cols=83 Identities=60% Similarity=1.066 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++++|||+|||+++|+++|+++|++||+|..|.|..++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred CCC
Q 024221 83 GRG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.6e-22 Score=133.80 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC--CcccCCceEEEEE
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~ 79 (270)
+..+.++|||+|||+++|+++|+++|++||+|..|.|..+ +|||||+|.+.++|..|+..|+ +..|.|+.|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3468899999999999999999999999999999999743 7999999999999999999876 4789999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976543
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=134.53 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 1 ~~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
|...++++|||+|||+++|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999999999999999999999999999955 67889999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 024221 79 LAHGGRGR 86 (270)
Q Consensus 79 ~~~~~~~~ 86 (270)
++......
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99865543
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-22 Score=133.52 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhc-CCcccCCceEEEEEc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELA 80 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~~ 80 (270)
+++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.+.++|++|+..| |+..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899999843 5789999999999999999999877 457799999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7543
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=136.75 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 5788999999999999999999999999999999999998
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 33
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=2.3e-21 Score=142.87 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=108.9
Q ss_pred CCCCCceEEEEecCHHHHHHHHHhc-CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCC
Q 024221 41 PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS 119 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 119 (270)
....+|+++|+|.+.++|++|+..| ||..++| .|.+.++........... ...............+|||+|||+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCC
Confidence 3466899999999999999999999 9999999 999998764221100000 0001111233345679999999999
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 120 ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 120 ~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
+++++|.++|++||.|..|.++.+ ..+||||+|.+.++|..|+..|||..+.| ..+.|....+
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 147 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNG 147 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCC
Confidence 999999999999999999999887 56799999999999999999999999998 5566665544
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=130.58 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc--cCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~i~v~~~~ 81 (270)
.|+++|||+|||..+|+++|.++|++||.|..|.+. ..+|||||+|.+.++|..|+..|||.. |.|+.|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 589999999999999999999999999999999997 358999999999999999999999875 789999999997
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-21 Score=129.77 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986543
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=136.42 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
..++++|||+|||+.+++++|+ ++|++||+|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 799999999999998888999999999999999999999999999999999999
Q ss_pred EccCC
Q 024221 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99753
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.8e-20 Score=139.34 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=102.6
Q ss_pred EEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEec
Q 024221 36 IDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVT 114 (270)
Q Consensus 36 ~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 114 (270)
++|.. ...++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEe
Confidence 44433 336789999999999999999988876444333333321111000000 00000111233456799999
Q ss_pred CCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 115 GLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 115 ~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
|||+.+++++|.++|++||.|..+.++.+. ..|||||+|.+.++|+.|+..|||..+.| ..|.|......
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCC
Confidence 999999999999999999999999998764 45699999999999999999999999999 66777766554
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=5.4e-21 Score=129.97 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
|+++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 689999999999999999999999999999999954 47789999999999999999999999999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=127.38 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4789999999999999999999999999999999955 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=4.2e-21 Score=127.51 Aligned_cols=79 Identities=34% Similarity=0.608 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++++|||+|||+.+++++|+++|++||+|..|.+. .++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3588999999999999999999999999999999984 3567899999999999999999999999999999999999
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 41
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=129.42 Aligned_cols=82 Identities=34% Similarity=0.510 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.++|||+|||+.+|+++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 457899999999999999999999999999999999653 4468999999999999999999999999999999999998
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 644
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=131.62 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCc----ccCCce
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGHR 74 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~----~~~g~~ 74 (270)
..=+||||+|||+.+|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|.+|+..|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 67888743 5889999999999999999999999997 489999
Q ss_pred EEEEEccC
Q 024221 75 LRVELAHG 82 (270)
Q Consensus 75 i~v~~~~~ 82 (270)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999963
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.5e-21 Score=130.48 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec------CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 76 (270)
+.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999954 336789999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 024221 77 VELAHGGRG 85 (270)
Q Consensus 77 v~~~~~~~~ 85 (270)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976543
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.4e-21 Score=130.51 Aligned_cols=82 Identities=37% Similarity=0.579 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 5789999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-21 Score=132.66 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC--cccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..|++ ..|.|+.|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999743 79999999999999999998874 6899999999999
Q ss_pred cCCCCC
Q 024221 81 HGGRGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 865543
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=130.34 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999954 56778999999999999999999999999999999999998
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.4e-21 Score=130.54 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86553
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=127.82 Aligned_cols=82 Identities=24% Similarity=0.531 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999954 47789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986543
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.9e-21 Score=128.55 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.+.++|||+|||+.+++++|+ ++|++||+|..|.|..+...+|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 367899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97543
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=8.5e-21 Score=127.97 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999954 66788999999999999999999999999999999999998
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=129.45 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=127.75 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc--CCcccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~i~v~~~ 80 (270)
..++++|||+|||+.+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|..|+..| ++..|.|+.|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 36889999999999999999999999999999999874 3899999999999999999976 567899999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86543
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=129.30 Aligned_cols=81 Identities=31% Similarity=0.484 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7654
No 54
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=2.9e-21 Score=131.62 Aligned_cols=83 Identities=29% Similarity=0.546 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEE
Q 024221 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (270)
Q Consensus 1 ~~~~~~~~v~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 76 (270)
|...++++|||+|||+++++++|. ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999977777889999999999999999999999999999999
Q ss_pred EEEccCC
Q 024221 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999753
No 55
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.4e-21 Score=130.11 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc--ccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~i~v~~ 79 (270)
..++++|||+|||+ .+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35889999999999 999999999999999999999973 4689999999999999999998864 59999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98543
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=127.73 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4678999999999999999999999999999999954 3678999999999999999999999999999999999997
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.4e-20 Score=131.10 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999954 5777899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024221 81 HGGRGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 866544
No 58
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=128.21 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-Eeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.++++|||+|||+++|+++|.++|+.||+|..+ .|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 478999999999999999999999999999999 8843 577899999999999999999999999999999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97644
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=9.2e-21 Score=125.27 Aligned_cols=77 Identities=25% Similarity=0.479 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+.+|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999953 577899999999999999999999999999999999999975
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=128.76 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5789999999999999999999999999999999954 46778999999999999999999999999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 61
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=128.25 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC--cccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+++++|+++|++||.|..|.|.. .+|||||+|.+.++|.+|+..||+ ..|.|+.|.|.|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5789999999999999999999999999999999874 489999999999999999998875 45999999999998
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6543
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=127.61 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..+.++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 357899999999999999999999999999999999653 3478999999999999999999999999999999999998
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6543
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=129.80 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCce---
Q 024221 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 74 (270)
+..++++|||+|||+++|+++|+++|++||+|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356899999999999999999999999999999 999853 5678899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 024221 75 -LRVELAHGGR 84 (270)
Q Consensus 75 -i~v~~~~~~~ 84 (270)
|+|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997544
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=3.7e-20 Score=127.49 Aligned_cols=78 Identities=24% Similarity=0.503 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|++||+|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 679999999999999999999999999999999999865
Q ss_pred CCC
Q 024221 84 RGR 86 (270)
Q Consensus 84 ~~~ 86 (270)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.6e-21 Score=130.70 Aligned_cols=81 Identities=35% Similarity=0.580 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5689999999999999999999999999999999954 5678899999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=126.73 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999954 5678899999999999999999999999999999999998
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=128.56 Aligned_cols=82 Identities=26% Similarity=0.472 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec----CCCCCceEEEEecCHHHHHHHHHhc-CCcccCCceEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v 77 (270)
..++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 35789999999999999999999999999999999943 5778999999999999999999999 999999999999
Q ss_pred EEccCCC
Q 024221 78 ELAHGGR 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.++....
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998654
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=125.63 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCC---C-CCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~---~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+++|||+|||+++|+++|.++|++||+|..+.+..+. . ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 367899999999999999999999999999999995432 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 024221 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.++
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9654
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=129.64 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
..++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35789999999999999999999999999999999954 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.6e-20 Score=131.96 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999954 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86543
No 71
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=123.88 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
+.+.++|||+|||+++|+++|+++|++||+|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3578999999999999999999999999999999998 78999999999999999999999999999999999986
Q ss_pred CCC
Q 024221 83 GRG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-20 Score=128.55 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
+.+.++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45789999999999999999999999999999999954 478899999999999999999999998 89999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97544
No 73
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=127.40 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC-----ceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~i~v~ 78 (270)
...++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46789999999999999999999999999999999755 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 024221 79 LAHGGRG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9986443
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=130.25 Aligned_cols=80 Identities=28% Similarity=0.517 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4678899999999999999999999999999999954 4777899999999999999999999999999999999999
Q ss_pred cCC
Q 024221 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=3e-20 Score=128.43 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCC---ceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~i~v~ 78 (270)
.++++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999954 56778999999999999999999999999998 999999
Q ss_pred EccCCC
Q 024221 79 LAHGGR 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998654
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=4.1e-20 Score=127.98 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCccc---CCceEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~i~ 76 (270)
..++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45789999999999999999999999999999999955 477899999999999999999999999887 899999
Q ss_pred EEEccCCC
Q 024221 77 VELAHGGR 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997644
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=124.10 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++++|||+|||+++|+++|+++|++||+|..|.+. ++||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999976
Q ss_pred CCC
Q 024221 83 GRG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=127.88 Aligned_cols=80 Identities=25% Similarity=0.495 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC----CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
..+.++|||+|||+++|+++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999553 677999999999999999999 799999999999999
Q ss_pred EccCCC
Q 024221 79 LAHGGR 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 997644
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=128.10 Aligned_cols=81 Identities=22% Similarity=0.478 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcC------CcccCCce
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~------g~~~~g~~ 74 (270)
.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999964 46789999999999999999999999 99999999
Q ss_pred EEEEEccCCC
Q 024221 75 LRVELAHGGR 84 (270)
Q Consensus 75 i~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999997644
No 80
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=123.70 Aligned_cols=77 Identities=32% Similarity=0.579 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..+.++|||+|||+++|+++|+++|++||+|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3578999999999999999999999999999999997 56999999999999999999999999999999999986
Q ss_pred CC
Q 024221 83 GR 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 81 ~~ 82 (90)
T 2dnp_A 81 GQ 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=128.26 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. .+.++|||||+|.+.++|.+|+. +||..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 4678999999999999999999999999999999954 37789999999999999999999 99999999999999876
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=127.56 Aligned_cols=79 Identities=28% Similarity=0.502 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
..+.++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35779999999999999999999999999999999954 3667899999999999999999999999999999999998
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 83
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=127.54 Aligned_cols=78 Identities=36% Similarity=0.580 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 5778999999999999999999999999999999954 3677899999999999999999999999999999999998
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 6
No 84
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=129.96 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC--CcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~ 79 (270)
..++++|||+|||++ +|+++|.++|++||+|..|.|. ..+|||||+|.+.++|..|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 9999999999999999999997 458999999999999999999886 4669999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97544
No 85
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=2.3e-20 Score=129.22 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
...++|||+|||+++|+++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899998843 35789999999999999999999999999999999999864
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.7e-20 Score=134.16 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999999964 4688999999999999999999999999999999999998
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7543
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.3e-21 Score=129.37 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+|||+|||+++|+++|+++|+.|| .|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999854 67889999999999999999999999999999999999987
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 544
No 88
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=125.40 Aligned_cols=77 Identities=26% Similarity=0.486 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC--CceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~~~ 81 (270)
.++++|||+|||+++|+++|+++|++||+|..|.+... +|||||+|.+.++|++|+..|||..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999998633 789999999999999999999999999 9999999997
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 89
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=129.74 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
++.++|||+|||+.+|+++|+++|++||.|..|.|. ..+|||||+|.+.++|..|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 467899999999999999999999999999999986 36799999999999999999999999999999999999864
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 90
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=8.1e-21 Score=129.90 Aligned_cols=78 Identities=24% Similarity=0.425 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC-ce
Q 024221 5 ASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HR 74 (270)
Q Consensus 5 ~~~~v~v~nl~~------~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~ 74 (270)
.+++|||+|||+ ++++++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 578999999999 999999999999999999999953 47889999999999999999999999999999 99
Q ss_pred EEEEEccC
Q 024221 75 LRVELAHG 82 (270)
Q Consensus 75 i~v~~~~~ 82 (270)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999863
No 91
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=127.66 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEee-cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc-eE
Q 024221 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~i 75 (270)
..+++|||+|||+.+ |+++|.++|++||+|..|.|. .++.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 889999999999999999985 4678899999999999999999999999999999 99
Q ss_pred EEEEccC
Q 024221 76 RVELAHG 82 (270)
Q Consensus 76 ~v~~~~~ 82 (270)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999864
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.1e-20 Score=129.47 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999953 5778999999999999999999999999999999999999
Q ss_pred cCC
Q 024221 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 753
No 93
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=5.3e-20 Score=123.26 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999943 5788999999999999999999 799999999999999997
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 94
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=127.06 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc-----CCce
Q 024221 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (270)
Q Consensus 2 ~~~~~~~v~v--~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-----~g~~ 74 (270)
+..|+++||| +||++++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|+..|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 77999999999999999999999998863 479999999999999999999999988 6899
Q ss_pred EEEEEccCCC
Q 024221 75 LRVELAHGGR 84 (270)
Q Consensus 75 i~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987533
No 95
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=122.99 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEee-cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc-eEEE
Q 024221 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (270)
Q Consensus 6 ~~~v~v~nl~~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~i~v 77 (270)
+++|||+|||+.+ |+++|+++|++||+|..|.|. .++.++|||||+|.+.++|.+|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4678899999999999999999999999999999 8876
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=126.74 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcc-cCCceEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~i~v~ 78 (270)
..++++|||+|||+++|+++|.++|+. ||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 357899999999999999999999999 99999999954 57788999999999999999999999999 999999999
Q ss_pred EccCCC
Q 024221 79 LAHGGR 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997544
No 97
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=3.4e-20 Score=128.62 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4688999999999999999999999999999999853 56778999999999999999999999999999999999985
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=126.58 Aligned_cols=78 Identities=29% Similarity=0.459 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.+.++|||+|||+++|+++|+++|+.||.|.. +.+.. ++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88854 47789999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 024221 73 HRLRVELAH 81 (270)
Q Consensus 73 ~~i~v~~~~ 81 (270)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 99
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.7e-20 Score=131.44 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999954 478899999999999999999999999999999999998
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 100
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.82 E-value=3.8e-20 Score=129.88 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
+..++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45789999999999999999999999999999999754 899999999999999999999999999986553
No 101
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=128.91 Aligned_cols=79 Identities=28% Similarity=0.557 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999953 5677899999999999999999999999999999999998
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=126.39 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.|+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46889999999999999999999999999999999754 899999999999999999999999999999999999864
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=122.54 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc-CCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~~~ 81 (270)
+.++++|||+|||+.+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|..|+..| ||..|.|+.|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35789999999999999999999999999999999974 4799999999999999999988 9999999999999974
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=128.66 Aligned_cols=82 Identities=28% Similarity=0.493 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~--------~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.++++|||+|||+.+|+++|+++|+.||.|. .|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 588843 57889999999999999999999999999999
Q ss_pred ceEEEEEccCCCC
Q 024221 73 HRLRVELAHGGRG 85 (270)
Q Consensus 73 ~~i~v~~~~~~~~ 85 (270)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999986543
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=128.38 Aligned_cols=79 Identities=25% Similarity=0.506 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.+.++|||+|||.++|+++|+++|++||+|..|.+.. .+.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999954 345789999999999999999999999999999999999874
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.7e-20 Score=131.78 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999943 5777999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 86543
No 107
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=7.3e-20 Score=126.00 Aligned_cols=80 Identities=29% Similarity=0.543 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+.++|||+|||+.+|+++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999954 4678899999999999999999 7999999999999999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97644
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=124.97 Aligned_cols=78 Identities=35% Similarity=0.551 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+.+|+++|+++|++||+|..|.+. ..+|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE---TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 467899999999999999999999999999999997 34799999999999999999999999999999999999764
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 109
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=6.5e-20 Score=122.26 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+.++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999954 47789999999999999999997 688899999999987
Q ss_pred c
Q 024221 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=1e-19 Score=123.66 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
..++++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 35789999999998 99999999999999999999985 7999999999999999999999999999999999986
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=128.85 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999954 57789999999999999999999999999999999999998
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=128.61 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.++++|||+|||+++|+++|.++|+.||.| ..+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555554 788899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986543
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=131.65 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024221 81 HGGRGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 865443
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-20 Score=124.91 Aligned_cols=77 Identities=25% Similarity=0.514 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.++++|||+|||+ .+|+++|.++|++||+|..|.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 5889999999998 99999999999999999999996 79999999999999999999999999999999999976
Q ss_pred CCC
Q 024221 83 GRG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 115
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=125.02 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEee-c---CCCCCceEEEEecCHHHHHHHHHhcC--CcccCCceE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~i 75 (270)
+.++++|||+|||+.+|+++|+++|+.||. |..|.+. . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 357899999999999999999999999998 9999985 3 45789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 024221 76 RVELAHGGRG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 116
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=129.51 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEeecCC------CCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996532 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024221 75 LRVELAHGGR 84 (270)
Q Consensus 75 i~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997543
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=125.44 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|++||.|.-+ ...++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988322 2346788999999999999999999999999999999999999765
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=7.8e-20 Score=126.67 Aligned_cols=76 Identities=33% Similarity=0.586 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|++||+|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999999754
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=125.34 Aligned_cols=80 Identities=15% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..+ |..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999954 4788999999999999999999965 59999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 120
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=122.34 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999876 7899999999999999999999999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=126.82 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+.++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999954 467789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976543
No 122
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=7e-20 Score=132.07 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=123.69 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
..+++|||+|||+++|+++|+++|+.||.|. +.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3488999999999999999999999999996 5553 3477899999999999999999999999999999999999754
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=134.63 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++|||+|||+++|+++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999953 578899999999999999999999999999999999999
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 125
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=6.2e-20 Score=118.77 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999843 57889999999999999999998 9999999999999875
No 126
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-20 Score=124.88 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35889999999999999999999999999999999854 478899999999999999999999999999999998866
Q ss_pred c
Q 024221 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.4e-20 Score=125.24 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..+++|||+|||.++|+++|+++|+.||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 5689999999999999999999999999999999999863
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=122.78 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC-cccCCceEEEEEc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~i~v~~~ 80 (270)
+.+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 478999999999999999999999 9999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7644
No 129
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.6e-19 Score=133.08 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999954 6789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8e-20 Score=126.06 Aligned_cols=81 Identities=33% Similarity=0.701 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999953 5677899999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=1.9e-19 Score=133.42 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024221 81 HGGRG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86443
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=130.45 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEeec---CCCCCceEEEEecCHHHHHHHHHhcCCc----ccCCc
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~----~~~g~ 73 (270)
+.++++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88843 678899999999999 999999999999 99999
Q ss_pred eEEEEEccCCC
Q 024221 74 RLRVELAHGGR 84 (270)
Q Consensus 74 ~i~v~~~~~~~ 84 (270)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 133
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-20 Score=125.97 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe---ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
...++|||+|||+.+|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45688999999999999999999999999976655 345778999999999999999999999999999999999998
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 134
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=127.20 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999954 4678999999999999999999 799999999999999987
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=125.11 Aligned_cols=77 Identities=27% Similarity=0.540 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec----CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
...++|||+|||+++|+++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999943 5778999999999999999999 7999999999999999
Q ss_pred ccC
Q 024221 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 874
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-20 Score=118.92 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..+| ..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999954 47789999999999999999999998 9999999999987
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=2.5e-19 Score=124.82 Aligned_cols=75 Identities=31% Similarity=0.643 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~v~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
++++|||+|||+. +|+++|+++|++||+|..|.+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999754
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=3.6e-20 Score=125.65 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++++|||+|||+++|+++|+++|++||.|..+.+. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999876663 356788999999999999999999999999999999999875
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-20 Score=124.46 Aligned_cols=78 Identities=28% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467899999999999999999999999999877 567888999999999999999999999999999999999999753
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=121.30 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 35789999999999999999999999999999999954 47788999999999999999999 47799999999999
Q ss_pred ccCCCC
Q 024221 80 AHGGRG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=129.72 Aligned_cols=77 Identities=35% Similarity=0.640 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4788999999999999999999999999999999999875
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=121.58 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|++|+.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46789999999999999999999999999987 77743 678899999999999999999996 999999999999998
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6533
No 143
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.7e-19 Score=115.27 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 4 ~~~~~-v~v~nl~~~~t~~~----l~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.|+.| |||+|||..+++++ |.++|++| |+|.+| ++ |+|||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599988 33 99999999999999999999999999999999
Q ss_pred EEccCCC
Q 024221 78 ELAHGGR 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.+|+...
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998644
No 144
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=4.4e-20 Score=123.91 Aligned_cols=77 Identities=34% Similarity=0.622 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
++|||+|||+++++++|.++|+.||+|..|.+.. ++.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999954 4788999999999999 99999999999999999999999754
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=123.22 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|+.|+.|.-+....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 57899999999999999999999999876554444457788999999999999999999999999999999999999764
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 93 ~ 93 (102)
T 2fc8_A 93 G 93 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=132.72 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
+.++++|||+|||+.+|+++|.++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999999876 555668899999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024221 75 LRVELAHGGR 84 (270)
Q Consensus 75 i~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997544
No 147
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=119.39 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 568999999999999999999999999 999999954 46778999999999999999999 99999999999999997
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 148
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=2.3e-19 Score=134.16 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999953 5778899999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7544
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=4.3e-19 Score=126.41 Aligned_cols=79 Identities=28% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEee---cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|+.||+|..|.|. .++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999994 36788999999999999999999 699999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 150
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.8e-19 Score=123.80 Aligned_cols=79 Identities=19% Similarity=0.390 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999954 477899999999999999999996 9999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=125.91 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578899999999999999999999999999 7788743 678899999999999999999995 999999999999998
Q ss_pred cC
Q 024221 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=1.2e-19 Score=127.26 Aligned_cols=79 Identities=54% Similarity=0.979 Sum_probs=67.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceee-eeeeeec
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVRE 184 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~-~~i~~~~ 184 (270)
....+|||+|||+++++++|+++|.+||.|..|.++.+ +||||+|.+.++|++|++.|||..++|+... .++.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45689999999999999999999999999999999877 7999999999999999999999999996532 4566665
Q ss_pred ccc
Q 024221 185 YDH 187 (270)
Q Consensus 185 ~~~ 187 (270)
...
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.4e-19 Score=119.69 Aligned_cols=77 Identities=32% Similarity=0.429 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
++..++|||+|||+++++++|+++|++| +|..+.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3678999999999999999999999999 99999885 6789999999999999999999999999999999999864
Q ss_pred C
Q 024221 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=124.35 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCccc--------CCc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--------~g~ 73 (270)
.+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999954 567789999999999999999999999999 588
Q ss_pred eEEEEEccC
Q 024221 74 RLRVELAHG 82 (270)
Q Consensus 74 ~i~v~~~~~ 82 (270)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=5e-19 Score=130.30 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.+.++|||+|||+++|+++|+++|+.||+|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999754 6899999999999999999999999999999999998753
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=117.53 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 47789999996 99999999999999999999995 67899999999999999999999999999999999999754
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=117.83 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
+..++|||+|||+++|+++|+++|+.||+|..|.+.. ...+ ||||+|.+.++|.+|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 4678999999999999999999999999999983322 1222 99999999999999999 9999999999999988654
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2.2e-19 Score=116.13 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 47789999999999999999999 6999999999999875
No 159
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-20 Score=125.42 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999999877222 3357889999999999999999999 99999999999999997
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=118.82 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-eecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..+++|||+|||+++|+++|+++|+.||+|..|. +..+ ...+.|||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999995 6433 2345599999999999999999999999999999999975
Q ss_pred C
Q 024221 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=121.78 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.||.| .|.|.. ++.++|||||+|.+.++|++|+. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 467899999999999999999999999955 888843 67789999999999999999996 89999999999999987
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 162
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=4.6e-19 Score=127.25 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. |||..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 88888854 47788999999999999999999 99999999999999
Q ss_pred Ecc
Q 024221 79 LAH 81 (270)
Q Consensus 79 ~~~ 81 (270)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.5e-19 Score=126.17 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. |||..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999999 88888854 47788999999999999999999 99999999999999
Q ss_pred Ecc
Q 024221 79 LAH 81 (270)
Q Consensus 79 ~~~ 81 (270)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 885
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=9.8e-19 Score=131.79 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3578999999999999999999999999999999954 47889999999999999999999999999999999999997
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-19 Score=125.65 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-Ee--ecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||.|..+ .+ ..++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999998763 33 3567889999999999999999999 9999999999999998
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 166
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.6e-18 Score=116.27 Aligned_cols=82 Identities=55% Similarity=0.960 Sum_probs=71.1
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccce-eeeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF-SRAYVR 181 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~-~~~~i~ 181 (270)
+......+|||+|||+.+++++|+++|.+||.|..|.++.+ +||||+|.+.++|++|++.||+..+.|+. ....|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 33456789999999999999999999999999999999887 79999999999999999999999999833 235677
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
|....+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 776654
No 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=6.3e-19 Score=138.34 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++|||+||++++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 678899999999999999999999999999999999999
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=4.4e-18 Score=124.57 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~~~~~~ 84 (270)
.+|||+||++.+|+++|+++|++||+|..|.|.. ...+|||||+|.+.++|+.|+..|||..|.| +.|+|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3478999999999999999999999999999843 3357899999999999999999999999965 999999998654
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=119.19 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|++|+. ||+..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999954 47889999999999999999995 99999999999998875
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-19 Score=122.52 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
..+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|.+|+. |||..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357889999999999999999999999998 88999854 47889999999999999999999 9999999999999
Q ss_pred EEcc
Q 024221 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=2e-18 Score=114.94 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
+++.++|||+|||+++|+++|+++|+.| | +|..+.+.. .+|||||+|.+.++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 999999863 4899999999999999999 89999999
Q ss_pred CceEEEEE
Q 024221 72 GHRLRVEL 79 (270)
Q Consensus 72 g~~i~v~~ 79 (270)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999963
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=3.2e-18 Score=120.79 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCce-EEEEecCHHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~~~~~~ 84 (270)
.|||+||++.+|+++|.++|++||+|..|.+.. ..+|+ |||+|.+.++|..|+..|||..|.| ..|+|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 356999999999999999999999999998854 23677 9999999999999999999999988 899999998654
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=124.91 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEee--cCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v----~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.+.++|||+|||+++|+++|+++|+.||+| ..|.|. .++.++|||||+|.+.++|++|+.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999986 577774 3678899999999999999999994 999999999999
Q ss_pred EEcc
Q 024221 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8774
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.1e-18 Score=118.92 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCce-EEEEecCHHHHHHHHHhcCCcccCC--ceEEEEE
Q 024221 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (270)
Q Consensus 5 ~~~~--v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~ 79 (270)
++++ |||+||++.+|+++|.++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999998532 386 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 024221 80 AHGGR 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=5.8e-18 Score=116.16 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEeecC----CCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 2 ~~~~~~~v~v~nl~~-----~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
...++++|+|.||.. +-++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457999999999963 2478999999999999999999653 5789999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 024221 73 HRLRVELAHG 82 (270)
Q Consensus 73 ~~i~v~~~~~ 82 (270)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999863
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=8.4e-19 Score=126.28 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|++|| |..|.|.. ++.++|||||+|.+.++|++|+ .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3568999999999999999999999999 66888854 4788999999999999999999 599999999999999987
Q ss_pred CCC
Q 024221 82 GGR 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=6.1e-18 Score=112.83 Aligned_cols=73 Identities=23% Similarity=0.478 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcc--cCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~i~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999753 78999999999999883 45544 469999999986
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 83 ~ 83 (89)
T 3d2w_A 83 P 83 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=3.3e-18 Score=120.85 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++|+. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 357899999999999999999999999 677 888853 47889999999999999999999 588999999999988
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.6e-20 Score=128.16 Aligned_cols=82 Identities=28% Similarity=0.430 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
..++++|||+|||+.+++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77743 4778999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 024221 72 GHRLRVELAHGGR 84 (270)
Q Consensus 72 g~~i~v~~~~~~~ 84 (270)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999997544
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=113.56 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++++|||+|||+++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+.. +..+.|..|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 357899999999999999999999999999999998643 789999999999999764331 3455899999999875
Q ss_pred CC
Q 024221 83 GR 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=8.1e-18 Score=118.77 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|+.||+|..|.+. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46799999996 69999999999999999999996 67899999999999999999999999999999999999754
Q ss_pred C
Q 024221 84 R 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 182
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=1.5e-17 Score=124.26 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=70.5
Q ss_pred EEecCHHHHHHHHHhcCCcccC--CceEEEEEccCCCCCCCCCCC-CCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHH
Q 024221 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRH-SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~ 126 (270)
.+|.+.++|..|+..|++.... |+.+.+.+............. .......+......+..+|||+|||+.+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987765 767766654322111000000 0000011122334456799999999999999999
Q ss_pred HHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 127 DHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 127 ~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+..|||..|.| ..|.|.+....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 9999999999999998754 3699999999999999999999999999 56666665543
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=2.5e-18 Score=118.05 Aligned_cols=78 Identities=23% Similarity=0.498 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
.++++|||+|||+++|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. ||..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3578999999999999999999999999999999954 56778999999999999999999 9999999999999987
Q ss_pred CC
Q 024221 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=114.50 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---C---CCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---P---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.++++|||+|||+++|+++|+++|++||+|. +.++. + +.++|||||+|.+.++|++|+..|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 5789999999999999999999999999999 66643 2 57899999999999999999998842 55666655
Q ss_pred EEc
Q 024221 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=2.4e-17 Score=128.65 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=123.62 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.++++|||+|||+.+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4678999999999999999999999999999999953 5778899999999999999999999999999999999998
Q ss_pred c
Q 024221 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.7e-17 Score=129.35 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec-CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
..++|||+|||+.+|+++|+++|+.||.|..|.|.. .+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 467899999999999999999999999999999954 455789999999999999999999999999999999999864
No 188
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=6.6e-17 Score=109.97 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=68.6
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
.+++|||+|||+++|+++|.++|++||.|..+.++.+... |||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 4578999999999999999999999999999999987543 599999999999999999999999999 56777
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
.+.++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 66543
No 189
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=115.67 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecC----HHH----HHHHHH--hcCCcc
Q 024221 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (270)
Q Consensus 7 ~~v~v~nl----~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~----~~~----a~~A~~--~l~g~~ 69 (270)
+.|||+|| |+.+++++|+++|+.||+|..|.+.. |+.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999944 67889999999996 333 788888 789999
Q ss_pred cCCceEEEEEcc
Q 024221 70 FDGHRLRVELAH 81 (270)
Q Consensus 70 ~~g~~i~v~~~~ 81 (270)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999875
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.5e-17 Score=129.90 Aligned_cols=77 Identities=27% Similarity=0.442 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCccc----
Q 024221 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~---------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 70 (270)
.++++|||+||+..+ ++++|+++|++||+|..|.|. ..+|||||+|.+.++|+.|+..|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 799999999999999999997 3589999999999999999999999999
Q ss_pred --------CCceEEEEEccCC
Q 024221 71 --------DGHRLRVELAHGG 83 (270)
Q Consensus 71 --------~g~~i~v~~~~~~ 83 (270)
.|+.|.|.||...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999753
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=3.3e-17 Score=113.31 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=69.7
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
....+|||+|||+.+++++|+++|.+|| .|..+.+......|||||+|.+.++|++|++.|||..+.| ..|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3457999999999999999999999999 8999999766677899999999999999999999999999 6677766
Q ss_pred ccc
Q 024221 185 YDH 187 (270)
Q Consensus 185 ~~~ 187 (270)
...
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 192
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=2.4e-17 Score=118.72 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=71.1
Q ss_pred ceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHH
Q 024221 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l 125 (270)
-++|++|.+...+..|+..++|....|..- +.+ ....+......+|||+|||+.+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp -------------------------------CCS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 478899999999999999998866555421 101 011133345679999999999999999
Q ss_pred HHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 126 KDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 126 ~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
.++|++||.|..|.++.+. ..+||||+|.+.++|++|+..|||..+.| ..|.|......
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 9999999999999998764 35699999999999999999999999999 56666665543
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=111.63 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 4 RASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t-----------~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.++++|+|.||..... +++|+++|++||+|..|.| .+..++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5789999999944432 6899999999999999976 455689999999999999999999999999999
Q ss_pred ceEEEEEccCC
Q 024221 73 HRLRVELAHGG 83 (270)
Q Consensus 73 ~~i~v~~~~~~ 83 (270)
+.|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998753
No 194
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-16 Score=109.53 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=69.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
....+|||+|||..+++++|.++|++||.|..|.+..+. ..+||||+|.+.++|++|++.|||..+.| ..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 345799999999999999999999999999999999875 34699999999999999999999999999 55666
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
......
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 665543
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=3.4e-17 Score=123.22 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
+.++|||+|||+.+|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999943 5677899999999999999999999999999999999987
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=7e-17 Score=124.30 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999953 5677899999999999999999999999999999999999
Q ss_pred cCCC
Q 024221 81 HGGR 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=4e-17 Score=123.21 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999888 66788999999999999999999999999999999999999864
No 198
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4.8e-17 Score=121.75 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++++|||+|||+.+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+. +||..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999953 57889999999999999999998 89999999999999986
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 199
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=106.68 Aligned_cols=77 Identities=8% Similarity=0.121 Sum_probs=67.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC--Ccccccceeeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVRVR 183 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~~i~~~ 183 (270)
.+..+|||+|||+.+++++|+++|++||.|..|.++.+ ++||||+|++.++|+.|++.|+ +..+.| ..|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 45679999999999999999999999999999999876 6799999999999999999886 478888 667777
Q ss_pred ccccC
Q 024221 184 EYDHR 188 (270)
Q Consensus 184 ~~~~~ 188 (270)
....+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 66543
No 200
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.1e-16 Score=119.79 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCC--ceEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999854 56778999999999999999999999999988 999998
Q ss_pred Ec
Q 024221 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 201
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1e-16 Score=120.81 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccC---CceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~i~v~~ 79 (270)
+.++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999954 4667899999999999999999999998776 49999998
Q ss_pred c
Q 024221 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=1.6e-16 Score=109.03 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEeecC-----CCCCceEEEEecCHHHHHHHHHhcCC
Q 024221 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~~~~v~v~nl--~~~~t--------~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
+.|+++|.|.|+ |..+. +++|+++|++||+|..|.|+.+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 44443 3689999999999999999653 35789999999999999999999999
Q ss_pred cccCCceEEEEEcc
Q 024221 68 YDFDGHRLRVELAH 81 (270)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (270)
..|.|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999875
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-15 Score=105.35 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+..+|||+|||+.+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445668999999999999999999999999999999976643 6799999999999999999999999999 6677
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|......
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 7776554
No 204
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=4.2e-16 Score=101.14 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=65.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
....|+|+||++.+|+++|.++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+.| ..|+|...
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 346899999999999999999999999999999876 57899999999999999999999999999 55665543
No 205
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=1.8e-16 Score=121.07 Aligned_cols=76 Identities=17% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccC
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~ 82 (270)
.++|||+|||+.+|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999954 4677899999999999999999855 5699999999998864
No 206
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.8e-16 Score=121.85 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999954 577899999999999999999994 8999999999999997
Q ss_pred CCCC
Q 024221 82 GGRG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6543
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=3.6e-16 Score=109.49 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=67.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
..+|||+|||+.+++++|.++|++||.|..|.++.+.. .|||||+|.+.++|++|++.|+|..+.| ..|.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 45899999999999999999999999999999998754 3699999999999999999999999999 56666655
Q ss_pred cc
Q 024221 186 DH 187 (270)
Q Consensus 186 ~~ 187 (270)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 208
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.3e-16 Score=117.91 Aligned_cols=76 Identities=32% Similarity=0.607 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec---CCCCCceEEEEecCHHHHHHHHHhcCCcccCCce--EEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--LRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--i~v~~ 79 (270)
+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999854 5667899999999999999999999999999965 88877
Q ss_pred c
Q 024221 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=106.01 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
+...+..+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|||..+.| .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG----R 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----B
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 3445568999999999999999999999999999999987643 4699999999999999999999999999 5
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.|.|......
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dnm_A 84 ELRVQVARYG 93 (103)
T ss_dssp CCEEEECSSC
T ss_pred EEEEEECCcC
Confidence 6666666544
No 210
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-15 Score=103.08 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
......+|||+|||+.+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|+..||+..+.| ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 344568999999999999999999999999999999988643 4799999999999999999999999999 6677
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|......
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 7766554
No 211
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=4.6e-16 Score=110.92 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=69.6
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
......+|||+|||+.+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|||..+.| ..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 334567999999999999999999999999999999987742 5699999999999999999999999999 55
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
|.|......
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 666655443
No 212
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=4.3e-16 Score=126.58 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997433 589999999999999999999999999 9999999985
No 213
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.3e-16 Score=105.54 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec--CCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
....+..+|||+|||+.+++++|.++|.+||.|..|.+..+ ...+||||+|.+.++|.+|+..|||..+.| ..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 33446789999999999999999999999999999999987 334699999999999999999999999999 566
Q ss_pred eeeccccC
Q 024221 181 RVREYDHR 188 (270)
Q Consensus 181 ~~~~~~~~ 188 (270)
.|......
T Consensus 86 ~V~~a~~~ 93 (103)
T 2d9p_A 86 YVALAQRK 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEEeccc
Confidence 66666554
No 214
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-15 Score=104.14 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=69.6
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
..+..+|||+|||+.+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.||+..+.| ..|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQI 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 3456799999999999999999999999999999998874 34699999999999999999999999999 556
Q ss_pred eeeccccC
Q 024221 181 RVREYDHR 188 (270)
Q Consensus 181 ~~~~~~~~ 188 (270)
.|......
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 66655443
No 215
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-15 Score=103.08 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=71.6
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC--CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.......+|||+|||+.+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|+..||+..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3344568999999999999999999999999999999997743 5799999999999999999999999999 667
Q ss_pred eeeccccC
Q 024221 181 RVREYDHR 188 (270)
Q Consensus 181 ~~~~~~~~ 188 (270)
.|......
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cq3_A 86 EVNNATAR 93 (103)
T ss_dssp EEEECCSS
T ss_pred EEEEcccC
Confidence 77766554
No 216
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=103.45 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=70.1
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
....+..+|||+|||..+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|++ |++..+.| .
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~ 79 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----K 79 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----e
Confidence 334556799999999999999999999999999999998764 35799999999999999999 99999999 5
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.+.|......
T Consensus 80 ~l~V~~a~~~ 89 (99)
T 2dgs_A 80 KVEVKRAEPR 89 (99)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 6666666554
No 217
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-15 Score=100.90 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=67.9
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.+..+|||+|||..+++++|.++|.+||.|..+.+. .+||||+|.+.++|++|+..||+..+.| ..+.|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEEC
Confidence 456799999999999999999999999999999998 4699999999999999999999999999 66777766
Q ss_pred ccCC
Q 024221 186 DHRR 189 (270)
Q Consensus 186 ~~~~ 189 (270)
....
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5543
No 218
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-15 Score=103.16 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=70.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|+.|+..|||..+.| ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 355799999999999999999999999999999998775 44699999999999999999999999999 6677
Q ss_pred eeccccCCC
Q 024221 182 VREYDHRRD 190 (270)
Q Consensus 182 ~~~~~~~~~ 190 (270)
|........
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 776665433
No 219
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=9.6e-16 Score=106.19 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=67.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
+..+|||+|||+.+++++|.++|++||.|..|.++.+.. .|||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 456999999999999999999999999999999998865 3599999999999999999999999999 55666
Q ss_pred eccc
Q 024221 183 REYD 186 (270)
Q Consensus 183 ~~~~ 186 (270)
....
T Consensus 81 ~~a~ 84 (110)
T 3s8s_A 81 QLDI 84 (110)
T ss_dssp EECS
T ss_pred EECC
Confidence 5543
No 220
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=102.81 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=69.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
......+|||+|||+.+++++|.++|.+||.|. +.++.+...+||||+|.+.++|+.|+..|||..+.| ..+.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 344567999999999999999999999999997 677778888999999999999999999999999999 556666
Q ss_pred cccc
Q 024221 184 EYDH 187 (270)
Q Consensus 184 ~~~~ 187 (270)
...+
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 5544
No 221
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=102.14 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
+..+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|||..+.| ..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 457999999999999999999999999999999998753 4699999999999999999999999999 56666
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
......
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 666554
No 222
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-15 Score=100.89 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=68.9
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
......+|||+|||+.+++++|.++|++||.|..+.+..+ ||||+|.+.++|.+|+..||+..+.| ..+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3445689999999999999999999999999999999865 99999999999999999999999999 667777
Q ss_pred ccccC
Q 024221 184 EYDHR 188 (270)
Q Consensus 184 ~~~~~ 188 (270)
.....
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 66554
No 223
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=119.87 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.|| .|..|.+..+ .+|+|||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999998543 3799999999999999999999999999 9999999987
Q ss_pred C
Q 024221 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 224
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=101.78 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=67.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
..+|||+|||+.+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|+..|||..+.| ..+.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 4699999999999999999999999999999998775 56799999999999999999999999999 55666
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
....+
T Consensus 80 ~~a~~ 84 (88)
T 4a8x_A 80 TAVLA 84 (88)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 55543
No 225
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-15 Score=103.25 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=71.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
....+..+|||+|||+.+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|+..||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 344566899999999999999999999999999999998875 34699999999999999999999999999 6
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.+.|......
T Consensus 86 ~l~v~~a~~~ 95 (105)
T 1x5u_A 86 PIRVNKASAH 95 (105)
T ss_dssp BCEEEETTTT
T ss_pred EEEEEECCCC
Confidence 6667665543
No 226
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=6.6e-15 Score=103.11 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
......+|||+|||+.+++++|.++|.+||.|..|.++.+... +||||+|.+.++|++|++.||+..+.| ..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3345679999999999999999999999999999999987643 599999999999999999999999999 66
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
|.|......
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 777776554
No 227
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-15 Score=103.89 Aligned_cols=82 Identities=11% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcC------Cccccc
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD------DSEFRN 173 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~------g~~~~g 173 (270)
...+..+|||+|||+.+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456799999999999999999999999999999998774 35699999999999999999999 999999
Q ss_pred ceeeeeeeeeccccCC
Q 024221 174 AFSRAYVRVREYDHRR 189 (270)
Q Consensus 174 ~~~~~~i~~~~~~~~~ 189 (270)
..+.|.......
T Consensus 91 ----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 ----RQLKVDLAVTRD 102 (111)
T ss_dssp ----CEEEEECCCCCC
T ss_pred ----EEEEEEECCCCc
Confidence 667777765543
No 228
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=9.9e-16 Score=120.62 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC-CceEEEEEccC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~~~~ 82 (270)
++++|||+|||+.+++++|+++|+.|| .|..|.+.. ..+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 579999999999999999999999999 999999953 24789999999999999999999999999 99999999874
No 229
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=101.80 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=69.8
Q ss_pred CcccEEEecCCCCCCCHHHHH----HHHHhcCCceEEEEEecCC-CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~----~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
....+|||+|||+.+++++|+ ++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|||..+.| ..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 355799999999999999999 9999999999999986643 5799999999999999999999999999 667
Q ss_pred eeeccccC
Q 024221 181 RVREYDHR 188 (270)
Q Consensus 181 ~~~~~~~~ 188 (270)
.|....+.
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 77766543
No 230
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=102.37 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=69.1
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-------CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
+..+|||+|||+.+++++|.++|++||.|..+.+..+.. .+||||+|.+.++|++|+..|||..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 456999999999999999999999999999999987644 3699999999999999999999999999 66
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
+.|......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 777766554
No 231
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=9.5e-15 Score=102.30 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=71.8
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.......+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----R 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3445678999999999999999999999999999999998753 3599999999999999999999999999 6
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.|.|......
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 6777766554
No 232
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-15 Score=103.80 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=69.9
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
....+|||+|||..+++++|.++|.+||.|..|.++.+ .+||||+|.+.++|..|+..|+|..+.| ..+.|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 35679999999999999999999999999999999877 6799999999999999999999999999 66777776
Q ss_pred ccCC
Q 024221 186 DHRR 189 (270)
Q Consensus 186 ~~~~ 189 (270)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 233
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1.8e-15 Score=105.17 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=65.5
Q ss_pred cccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 107 SEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 107 ~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
...+|||+|||+. +++++|.++|.+||.|..|.+ ..+||||+|.+.++|++|+..||+..+.| ..|.|...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEC
Confidence 4579999999999 999999999999999999999 45699999999999999999999999999 56666665
Q ss_pred cc
Q 024221 186 DH 187 (270)
Q Consensus 186 ~~ 187 (270)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 234
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-15 Score=103.00 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CCCEEEEEecCHHHHHHHHHHc-CCccccccee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~ 176 (270)
.......+|||+|||..+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|+..| |+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---
Confidence 344566899999999999999999999999999999998772 3569999999999999999999 9999999
Q ss_pred eeeeeeeccccC
Q 024221 177 RAYVRVREYDHR 188 (270)
Q Consensus 177 ~~~i~~~~~~~~ 188 (270)
..+.|......
T Consensus 87 -~~l~v~~a~~~ 97 (107)
T 2cph_A 87 -RRLVLEWADSE 97 (107)
T ss_dssp -CBCEEEECCCC
T ss_pred -CEEEEEeCCCC
Confidence 56666666554
No 235
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-15 Score=102.71 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
...+..+|||+|||..+++++|.++|++||.|..|.++.+.. .+||||+|.+.++|++|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 345678999999999999999999999999999999998753 3599999999999999999999999999 66
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
|.|......
T Consensus 87 l~v~~a~~~ 95 (103)
T 2cq0_A 87 LNVEWAKPS 95 (103)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 777766554
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-16 Score=104.28 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=66.2
Q ss_pred CcccEEEecCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCc--ccccceeeeeeee
Q 024221 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (270)
Q Consensus 106 ~~~~~~~v~~l~~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~~ 182 (270)
.+..+|||+|||+ .+++++|.++|.+||.|..|.++.+. +||||+|++.++|..|++.|++. .+.| ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 3567999999999 99999999999999999999998764 69999999999999999999864 4888 66677
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
.....
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 66654
No 237
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=5.3e-15 Score=101.47 Aligned_cols=75 Identities=9% Similarity=0.194 Sum_probs=67.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.+..+|||+|||+.+++++|.++|.+||.|..+.++.+ ||||+|.+.++|++|++.||+..+.| ..+.|...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 34579999999999999999999999999999999854 99999999999999999999999999 56777766
Q ss_pred ccC
Q 024221 186 DHR 188 (270)
Q Consensus 186 ~~~ 188 (270)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 238
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=103.59 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=70.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 456799999999999999999999999999999998763 35699999999999999999999999999 6677
Q ss_pred eeccccCC
Q 024221 182 VREYDHRR 189 (270)
Q Consensus 182 ~~~~~~~~ 189 (270)
|.......
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 77665543
No 239
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=3.5e-15 Score=102.93 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=69.5
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCccc---cccee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFS 176 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~---~g~~~ 176 (270)
......+|||+|||..+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|++.||+..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 33456799999999999999999999999999999998864 357999999999999999999999987 66
Q ss_pred eeeeeeeccccC
Q 024221 177 RAYVRVREYDHR 188 (270)
Q Consensus 177 ~~~i~~~~~~~~ 188 (270)
..+.|......
T Consensus 86 -~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 -RPIQVKPADSE 96 (106)
T ss_dssp -SCCEEEECCCC
T ss_pred -ceEEEEECCcc
Confidence 55666665544
No 240
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=4.5e-16 Score=120.20 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEeecC-CCCCceEEEEecCHHHHHHHHHhcCCcccCCc----eEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLRV 77 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~i~v 77 (270)
++++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|+|||+|.+.++|.+|+..|||..|.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 57899999999999999999999999999 88888543 45569999999999999999999999999877 6777
Q ss_pred EEc
Q 024221 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 665
No 241
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=101.33 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=65.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcc--cccceeeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAFSRAYVRVR 183 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~--~~g~~~~~~i~~~ 183 (270)
.+..+|||+|||+.+++++|.++|++||.|..+.++.. +++|||+|++.++|..|++.|++.. +.| ..|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45679999999999999999999999999999998753 5799999999999999999999876 668 556665
Q ss_pred ccc
Q 024221 184 EYD 186 (270)
Q Consensus 184 ~~~ 186 (270)
..+
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 543
No 242
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-15 Score=102.81 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=69.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-----CCEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
.+..+..+|||+|||+.+++++|.++|.+|| |..|.++.+.. .+||||+|.+.++|++|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3345568999999999999999999999999 99999987754 469999999999999999 999999999
Q ss_pred eeeeeeccccC
Q 024221 178 AYVRVREYDHR 188 (270)
Q Consensus 178 ~~i~~~~~~~~ 188 (270)
..|.|......
T Consensus 84 ~~l~V~~a~~~ 94 (104)
T 1wi8_A 84 KRIRVDVADQA 94 (104)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEEccCC
Confidence 66677766554
No 243
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-15 Score=100.89 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc--cceeeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFSRAYVRVR 183 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~--g~~~~~~i~~~ 183 (270)
.+..+|||+|||+.+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|++|++.||+..+. | ..+.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 34579999999999999999999999999999999876 569999999999999999999999999 7 556666
Q ss_pred ccccC
Q 024221 184 EYDHR 188 (270)
Q Consensus 184 ~~~~~ 188 (270)
.....
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 65543
No 244
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5e-15 Score=100.63 Aligned_cols=78 Identities=9% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc--CCcccccceeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL--DDSEFRNAFSRAYVR 181 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l--~g~~~~g~~~~~~i~ 181 (270)
...+..+|||+|||+.+++++|.++|.+||.|..+.++.+ ++||||+|++.++|..|++.| ++..+.| ..+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEE
Confidence 3345679999999999999999999999999999988875 679999999999999999987 4677888 5666
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
|.....
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 666554
No 245
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=99.91 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=67.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.+..+|||+|||+.+++++|.++|++||.|..+.+..+ ||||+|.+.++|+.|+..|||..+.| ..+.|...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEC
Confidence 45679999999999999999999999999999999865 99999999999999999999999999 66777766
Q ss_pred ccC
Q 024221 186 DHR 188 (270)
Q Consensus 186 ~~~ 188 (270)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 246
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.9e-15 Score=100.49 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=72.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCce-EEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.+..+|||+|||+.+++++|.++|.+||.|. .+.++.+... +||||+|.+.++|++|++.|||..+.|......+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999999 9999988643 5999999999999999999999999996544447
Q ss_pred eeeccccC
Q 024221 181 RVREYDHR 188 (270)
Q Consensus 181 ~~~~~~~~ 188 (270)
.+.+....
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 77766554
No 247
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=101.34 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=68.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEE-EEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~-~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
+..+|||+|||+.+++++|.++|.+||.|..+ .++.+. ..+||||+|.+.++|++|+..|||..+.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 45799999999999999999999999999999 888763 34699999999999999999999999999 6677
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|......
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 7766544
No 248
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=103.35 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=67.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
++|||+|||+.+++++|.++|++||.|..+.+..+ ..+||||+|.+.++|++|++.|||..+.| ..+.|......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 37999999999999999999999999999999988 67899999999999999999999999999 55666666544
No 249
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-15 Score=99.57 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
....+..+|||+|||+.+++++|.++|.+||.|..+.++.+... +||||+|.+.++|++|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 44456789999999999999999999999999999999987543 599999999999999999999999999 5
Q ss_pred eeeeecc
Q 024221 179 YVRVREY 185 (270)
Q Consensus 179 ~i~~~~~ 185 (270)
.+.|...
T Consensus 86 ~l~v~~a 92 (95)
T 2cqc_A 86 RIRVSGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 5666544
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-15 Score=104.44 Aligned_cols=78 Identities=8% Similarity=0.111 Sum_probs=67.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCC--cccccceeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 181 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~ 181 (270)
...+..+|||+|||+.+++++|+++|++||.|..|.++.+ ++||||+|++.++|.+|++.|++ ..+.| ..|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEE
Confidence 3345679999999999999999999999999999999876 57999999999999999999874 67888 5566
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
|.....
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 666544
No 251
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=100.67 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
....+..+|||+|||+.+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 86 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG----R 86 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----c
Confidence 4445668999999999999999999999999999999988644 4699999999999999999999999999 4
Q ss_pred eeeeec
Q 024221 179 YVRVRE 184 (270)
Q Consensus 179 ~i~~~~ 184 (270)
.+.|..
T Consensus 87 ~l~v~~ 92 (94)
T 2e5h_A 87 VIKASI 92 (94)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555543
No 252
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=3.3e-15 Score=98.78 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=65.9
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++.|||..+.| ..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 356799999999999999999999999999999998764 34699999999999999999999999999 4455
Q ss_pred eec
Q 024221 182 VRE 184 (270)
Q Consensus 182 ~~~ 184 (270)
+..
T Consensus 81 v~~ 83 (85)
T 3mdf_A 81 VNL 83 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 253
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=8.4e-15 Score=100.45 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.+..+..+|||+|||+.+++++|.++|.+|| |..|.++.+.. .+||||+|.+.++|++|+ .||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3445668999999999999999999999997 99999998864 359999999999999999 899999999 6
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.|.|......
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dng_A 84 SLRVDIAEGR 93 (103)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 6777766554
No 254
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=98.81 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=66.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
+..+|||+|||..+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|+.|+..|||..+.| ..+.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 457999999999999999999999999999999998753 3599999999999999999999999999 55555
Q ss_pred eccc
Q 024221 183 REYD 186 (270)
Q Consensus 183 ~~~~ 186 (270)
....
T Consensus 81 ~~a~ 84 (87)
T 3bs9_A 81 NWAT 84 (87)
T ss_dssp EEEC
T ss_pred EecC
Confidence 5543
No 255
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=4.5e-15 Score=99.66 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=68.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
.+..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|+..||+..+.| ..+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 456799999999999999999999999999999998753 34699999999999999999999999999 556666
Q ss_pred cccc
Q 024221 184 EYDH 187 (270)
Q Consensus 184 ~~~~ 187 (270)
....
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 256
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=3.4e-15 Score=101.08 Aligned_cols=76 Identities=11% Similarity=0.237 Sum_probs=67.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
..+|||+|||..+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..++| ..+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 46999999999999999999999999999999987743 5799999999999999999999999999 566666
Q ss_pred cccc
Q 024221 184 EYDH 187 (270)
Q Consensus 184 ~~~~ 187 (270)
....
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 257
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-14 Score=100.69 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=69.6
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
...+..+|||+|||+.+++++|.++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..||+..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 3345679999999999999999999999999999999988653 599999999999999999999999999 556
Q ss_pred eeecccc
Q 024221 181 RVREYDH 187 (270)
Q Consensus 181 ~~~~~~~ 187 (270)
.|.....
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 6665443
No 258
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=3.5e-15 Score=103.09 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=68.2
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
.....+|||+|||..+++++|.++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.| ..+.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3456799999999999999999999999999999998 5799999999999999999999999999 6677776
Q ss_pred cccC
Q 024221 185 YDHR 188 (270)
Q Consensus 185 ~~~~ 188 (270)
....
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 6554
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=102.51 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=68.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+|||+|||..+++++|.++|++||.|..|.++.+.. .+||||+|.+.++|++|+..|||..+.| ..+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEEE
Confidence 4567999999999999999999999999999999998765 3699999999999999999999999999 4555
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
|.....
T Consensus 97 V~~a~~ 102 (106)
T 1p27_B 97 VDWCFV 102 (106)
T ss_dssp EEESEE
T ss_pred EEeecC
Confidence 555443
No 260
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=98.35 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=64.5
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 5 ASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 5 ~~~~v~v~nl~-------~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
..+.|.|.-.. ..+|+++|+++|++||+|..|.|. +.++|||||+|.+.++|..|+..+++ +.|+.|+|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45667776554 458999999999999999999997 47799999999999999999997655 67999999
Q ss_pred EEccCCC
Q 024221 78 ELAHGGR 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987544
No 261
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=99.00 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=70.2
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
..+..+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.| ..+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 34567999999999999999999999999999999998763 2599999999999999999999999999 5677
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|....+.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7666544
No 262
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-14 Score=104.52 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=71.7
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.......+|||+|||..+++++|.++|+.||.|..|.++.+.. .+||||+|.+.++|.+|++.|||..+.| .
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 3444567999999999999999999999999999999998865 4599999999999999999999999999 5
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.|.|......
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 6777766554
No 263
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.8e-15 Score=124.37 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccC---Cc--e
Q 024221 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (270)
Q Consensus 2 ~~~~~~~v~v~n--l~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~--~ 74 (270)
++.|+++|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|+..|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 467999999999 578999999999999999999988753 5899999999999999999999998873 45 5
Q ss_pred EEEEEcc
Q 024221 75 LRVELAH 81 (270)
Q Consensus 75 i~v~~~~ 81 (270)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 264
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-15 Score=102.32 Aligned_cols=80 Identities=8% Similarity=0.103 Sum_probs=69.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCc----eEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|+..|||..+.| ..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 456799999999999999999999999998 67777766777899999999999999999999999998 5677
Q ss_pred eeccccCC
Q 024221 182 VREYDHRR 189 (270)
Q Consensus 182 ~~~~~~~~ 189 (270)
|.......
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 77665543
No 265
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-14 Score=98.32 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
..+..+|||+|||+.+++++|.++|.+| |.|..+.+.. +||||+|.+.++|++|+..|||..+.| ..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3456799999999999999999999999 8999888764 499999999999999999999999998 66777
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
......
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 776554
No 266
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=5e-15 Score=100.03 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=68.7
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
.......+|||+|||+.+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..||+..+.| ..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CE
Confidence 3445678999999999999999999999999999999998764 3599999999999999999999999999 55
Q ss_pred eeeecc
Q 024221 180 VRVREY 185 (270)
Q Consensus 180 i~~~~~ 185 (270)
+.|...
T Consensus 87 l~V~~a 92 (95)
T 2ywk_A 87 INVSGP 92 (95)
T ss_dssp CEEECC
T ss_pred EEEEEc
Confidence 555543
No 267
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=4.1e-15 Score=106.10 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=70.5
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
...+..+|||+|||+.+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|+..|||..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34456799999999999999999999999999999998764 45699999999999999999999999999 56
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
|.|......
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 666665543
No 268
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=6.8e-15 Score=96.75 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=66.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
.+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|+.|+..|||..+.| ..+.+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998754 3599999999999999999999999999 5666665
Q ss_pred ccc
Q 024221 185 YDH 187 (270)
Q Consensus 185 ~~~ 187 (270)
..+
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 269
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.3e-15 Score=100.02 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
..+..+|||+|||+.+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|||..+.| ..+.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 345679999999999999999999999999999999865 5799999999999999999999999999 5566666
Q ss_pred cccC
Q 024221 185 YDHR 188 (270)
Q Consensus 185 ~~~~ 188 (270)
....
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 5543
No 270
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-15 Score=101.54 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=65.5
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCc--ccccceeeeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~~ 182 (270)
..+..+|||+|||+.+++++|.++|.+||.|..+.++.+ ++||||+|++.++|.+|++.|++. .+.| ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345679999999999999999999999999999988764 679999999999999999988764 4788 55666
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
.....
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 65543
No 271
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=97.21 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc-CCcccccceeeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRAYVRV 182 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~~ 182 (270)
......+|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| ++..+.| ..+.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEE
Confidence 3345679999999999999999999999999999999875 569999999999999999999 9999999 44555
Q ss_pred ec
Q 024221 183 RE 184 (270)
Q Consensus 183 ~~ 184 (270)
.+
T Consensus 82 ~~ 83 (85)
T 2ytc_A 82 KW 83 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 272
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-14 Score=98.96 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHh-cCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcc-cccceeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSRA 178 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~-~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~-~~g~~~~~ 178 (270)
+..+..+|||+|||+.+++++|.++|.+ ||.|..+.++.+.. .+||||+|.+.++|.+|+..|++.. +.| .
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----K 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----S
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----E
Confidence 3445679999999999999999999999 99999999998753 3599999999999999999999999 998 5
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.+.|......
T Consensus 81 ~l~v~~a~~~ 90 (104)
T 2dhg_A 81 PVRLSVAIPK 90 (104)
T ss_dssp CCCCCBCCCC
T ss_pred eEEEEEccCC
Confidence 5666665443
No 273
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.2e-14 Score=107.43 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=70.3
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||..+++++|.++|++||.|..|.|+.+... +||||+|.+.++|++|+..||+..|.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 35679999999999999999999999999999999988643 599999999999999999999999999 6677
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|.+....
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 7766543
No 274
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=99.69 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=65.3
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCC-cccccceeeeeeeeec
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVRE 184 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g-~~~~g~~~~~~i~~~~ 184 (270)
...+|||+|||+.+++++|.++|.+||. |..+.+. ..+||||+|.+.++|++|++.||| ..+.| ..+.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEEE
Confidence 4579999999999999999999999999 6666553 357999999999999999999999 99999 6677777
Q ss_pred cccCC
Q 024221 185 YDHRR 189 (270)
Q Consensus 185 ~~~~~ 189 (270)
.....
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 66543
No 275
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=98.90 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=65.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcc
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE 170 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (270)
....+..+|||+|||..+++++|.++|++||.|.. +.++.+.. .|||||+|.+.++|+.|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456689999999999999999999999999999 99988754 3599999999999999999999999
Q ss_pred cccce
Q 024221 171 FRNAF 175 (270)
Q Consensus 171 ~~g~~ 175 (270)
+.|+.
T Consensus 88 ~~g~~ 92 (99)
T 2la6_A 88 FSGNP 92 (99)
T ss_dssp SSSSB
T ss_pred eCCcE
Confidence 99943
No 276
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=3.5e-16 Score=107.16 Aligned_cols=69 Identities=23% Similarity=0.443 Sum_probs=58.7
Q ss_pred cCCCCCCCHHHHHHHH------------hhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEE
Q 024221 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (270)
Q Consensus 12 ~nl~~~~t~~~l~~~F------------~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 77 (270)
.||++.+++++|+++| ++||+|..|.|.. ++.++|||||+|.++++|.+|+..|||..|.|+.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455677666655 9999999999954 3577999999999999999999999999999999999
Q ss_pred EEc
Q 024221 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 987
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=103.26 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCcccEEEecCCCCCCCHHHHH---HHHHhcCCceEEEEEecCC-------CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 105 RRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~---~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.....+|||+|||+.+++++|. ++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456799999999999999999 9999999999999987753 2699999999999999999999999999
Q ss_pred eeeeeeeeeccccC
Q 024221 175 FSRAYVRVREYDHR 188 (270)
Q Consensus 175 ~~~~~i~~~~~~~~ 188 (270)
..|.|.....+
T Consensus 91 ---r~l~V~~a~~k 101 (111)
T 2cpi_A 91 ---RTLKASLGTTK 101 (111)
T ss_dssp ---EEEEEESCCCC
T ss_pred ---EEEEEEecccc
Confidence 66777776554
No 278
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=8.3e-15 Score=100.13 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=66.3
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
...+|||+|||..+++++|.++|.+||.|..+.+. ...+||||+|.+.++|..|+..|||..++| ..+.|.+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEecc
Confidence 45799999999999999999999999999999988 456799999999999999999999999999 556665544
No 279
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=100.94 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=65.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcC-CceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcC-Ccccccceeeeeeee
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 182 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g-~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~-g~~~~g~~~~~~i~~ 182 (270)
.+|||+|||+.+|+++|.++|++|| .|..|.++.+. ..|||||+|.+.++|++|++.++ +..++| ..|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 89999998764 45799999999999999999874 567888 66777
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
....++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 765543
No 280
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=3.4e-15 Score=104.25 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHHhhcCCeeEEEeecC-------CCCCceEEEEecCHHHHHHHHHhcCCcccC
Q 024221 4 RASRTLYVGNLPG--D---IREREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (270)
Q Consensus 4 ~~~~~v~v~nl~~--~---~t~~~l~~~F~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
.++++|+|.|+-. . --+++|+++|++||+|..|.|..+ +.++|+|||+|.+.++|.+|+..|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999932 2 247899999999999999999542 345699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 024221 72 GHRLRVELAH 81 (270)
Q Consensus 72 g~~i~v~~~~ 81 (270)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999985
No 281
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=1.2e-14 Score=106.46 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=68.4
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
....|||+||++.+++++|.++|++||.|..|.+.....++||||+|.+.++|+.|++.|||..|.|.. ..++|.+.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEec
Confidence 346899999999999999999999999999999987776789999999999999999999999996521 456666655
Q ss_pred c
Q 024221 187 H 187 (270)
Q Consensus 187 ~ 187 (270)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 282
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-14 Score=100.81 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=70.4
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCce--------EEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCccc
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
......+|||+|||+.+++++|.++|.+||.|. .|.++.+.. .+||||+|.+.++|++|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 334567999999999999999999999999998 688887743 46999999999999999999999999
Q ss_pred ccceeeeeeeeeccccC
Q 024221 172 RNAFSRAYVRVREYDHR 188 (270)
Q Consensus 172 ~g~~~~~~i~~~~~~~~ 188 (270)
.| ..|.|......
T Consensus 91 ~g----~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QG----SKLKVSLARKK 103 (113)
T ss_dssp TT----EECEEECSSCC
T ss_pred CC----CEEEEEECCCC
Confidence 99 66777766554
No 283
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.3e-14 Score=102.09 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=64.9
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445668999999999999999999999999999999987643 56999999999999999999999999994
No 284
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=98.49 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=70.5
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.......+|||+|||+.+++++|.++|.+||.|..|.++.+... +||||+|.+.++|++|+.. ++..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34456689999999999999999999999999999999988543 5999999999999999998 9999999 6
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.|.|......
T Consensus 86 ~l~V~~a~~~ 95 (105)
T 2dh8_A 86 NIDPKPCTPR 95 (105)
T ss_dssp EEBCCCSCCS
T ss_pred EEEEEEccCC
Confidence 6777766554
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=3.7e-14 Score=100.62 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
.......+|||+|||..+++++|.++|.+||.|..|.+..+. ..+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 344567899999999999999999999999999999998875 45699999999999999999999999999 45
Q ss_pred eeeeccc
Q 024221 180 VRVREYD 186 (270)
Q Consensus 180 i~~~~~~ 186 (270)
+.|....
T Consensus 106 l~V~~a~ 112 (124)
T 2kt5_A 106 MDIQLVA 112 (124)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 5555443
No 286
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=100.13 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.....+|||+|||+.+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|+.|++.|+|..+.| ..+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 34567999999999999999999999999999999998754 3599999999999999999999999999 556
Q ss_pred eeecccc
Q 024221 181 RVREYDH 187 (270)
Q Consensus 181 ~~~~~~~ 187 (270)
.|....+
T Consensus 99 ~V~~a~~ 105 (108)
T 2jrs_A 99 KVGHVTE 105 (108)
T ss_dssp EEECSCS
T ss_pred EEEEccc
Confidence 6665544
No 287
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=1.1e-14 Score=101.23 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
...+..+|||+|||..+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|..|+..|||..+.| ..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 334567999999999999999999999999999999987743 4699999999999999999999999999 56
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
+.|......
T Consensus 98 l~V~~a~~~ 106 (110)
T 1oo0_B 98 IQVDWCFVK 106 (110)
T ss_dssp CEEEESEES
T ss_pred EEEEEcccC
Confidence 666665543
No 288
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.7e-15 Score=99.93 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=64.8
Q ss_pred CcccEEEecCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 106 ~~~~~~~v~~l~~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
.+..+|||+|||+ .+++++|.++|++||.|..+.+. .+||||+|.+.++|..|+..|||..+.| ..+.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG----KKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT----TTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEEE
Confidence 4567999999999 99999999999999999999996 5699999999999999999999999999 4455555
Q ss_pred ccc
Q 024221 185 YDH 187 (270)
Q Consensus 185 ~~~ 187 (270)
...
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 443
No 289
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.6e-15 Score=101.98 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC--CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
......+|||+|||..+++++|.++|++||.|..+.+..+. ..+||||+|.+.++|++|+..|||..++| ..+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 34456799999999999999999999999999999998764 35799999999999999999999999999 5566
Q ss_pred eeccc
Q 024221 182 VREYD 186 (270)
Q Consensus 182 ~~~~~ 186 (270)
|....
T Consensus 101 V~~a~ 105 (109)
T 2err_A 101 VNNAT 105 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65544
No 290
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=1.2e-14 Score=98.37 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=65.8
Q ss_pred CCCCcccEEEecCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 103 VSRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+..+|||+|||+ .+++++|.++|++||.|..+.+. .+||||+|.+.++|.+|+..|||..+.| ..+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 3445678999999998 99999999999999999999984 5699999999999999999999999998 5566
Q ss_pred eeccc
Q 024221 182 VREYD 186 (270)
Q Consensus 182 ~~~~~ 186 (270)
|....
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 65544
No 291
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=98.84 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=69.0
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEE-EEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
....+|||+|||+.+++++|.++|.+||.|..+ .++.+...+.|||+|.+.++|..|+..|||..+.| ..+.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 456799999999999999999999999999999 58888777789999999999999999999999999 5566655
Q ss_pred ccc
Q 024221 185 YDH 187 (270)
Q Consensus 185 ~~~ 187 (270)
..+
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 544
No 292
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=2.3e-14 Score=98.66 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=68.6
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
....+|||+|||+.+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.|||..+.|.. ...+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 3567999999999999999999999999999999998864 369999999999999999999999988721 134555
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
......
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 555443
No 293
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=100.86 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=65.7
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
...+..+|||+|||+.+++++|+++|.+||.|..+........+||||+|.+.++|++|+..||+..+.| ..|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEE
Confidence 3345689999999999999999999999998732222222445799999999999999999999999999 667777
Q ss_pred ccccC
Q 024221 184 EYDHR 188 (270)
Q Consensus 184 ~~~~~ 188 (270)
.....
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 66554
No 294
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=3.7e-15 Score=99.58 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=63.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcC--CceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
.+|||+|||+.+++++|.++|++|| .|..+.++.+.. .|||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 999999998854 3599999999999999999999999999 55666
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
....+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 55443
No 295
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=1.9e-14 Score=99.45 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
....+..+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|||..+.|+.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999999999999999998853 359999999999999999999999999943
No 296
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=103.86 Aligned_cols=78 Identities=6% Similarity=0.126 Sum_probs=67.6
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceE--EEEEecC----CCCEEEEEecCHHHHHHHHHHcCCc----ccccce
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDS----EFRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~--~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~----~~~g~~ 175 (270)
....+|||+|||+.+++++|.++|.+||.|.. |.++.+. ..|||||+|.+. +|.+|+..|||. .+.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-- 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-- 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--
Confidence 45679999999999999999999999999966 8998876 346999999999 999999999999 9999
Q ss_pred eeeeeeeeccccC
Q 024221 176 SRAYVRVREYDHR 188 (270)
Q Consensus 176 ~~~~i~~~~~~~~ 188 (270)
..|.|....+.
T Consensus 98 --r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 --KTINVEFAKGS 108 (131)
T ss_dssp --CCCCCEECCCS
T ss_pred --EEEEEEECCCC
Confidence 55666665543
No 297
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=99.67 Aligned_cols=77 Identities=8% Similarity=0.092 Sum_probs=65.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCC--ceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcc----cccce
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE----FRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~--i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~----~~g~~ 175 (270)
....+|||+|||+.+|+++|.++|++||. +..|.++.++. .|||||+|.+.++|++|++.|||.. ++|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 34569999999999999999999999995 67888887743 4699999999999999999999974 677
Q ss_pred eeeeeeeeccc
Q 024221 176 SRAYVRVREYD 186 (270)
Q Consensus 176 ~~~~i~~~~~~ 186 (270)
..|.|...+
T Consensus 85 --r~i~V~~Ak 93 (95)
T 2lkz_A 85 --KTIGVDFAK 93 (95)
T ss_dssp --EEEEEEECC
T ss_pred --EEEEEEEcc
Confidence 566666543
No 298
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=9.4e-15 Score=101.30 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCC--CC--------CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 4 RASRTLYVGNLPG--DI--------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 4 ~~~~~v~v~nl~~--~~--------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
-++++|.|.|+-. .. .+++|+++|++||.|..|.|..+ .++|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4789999999933 21 24578999999999999998544 3589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 024221 74 RLRVELAH 81 (270)
Q Consensus 74 ~i~v~~~~ 81 (270)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 299
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=103.08 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=65.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
...+|||+|||+.+++++|.++|.+||.|..|.+.. ..+||||+|.+.++|+.|+..|||..+.| ..+.|.+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEEECC
Confidence 467999999999999999999999999999988874 45799999999999999999999999999 445555443
No 300
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=99.08 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=62.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
+..+|||+|||+.+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|..|++.|||..+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 457999999999999999999999999999999987743 56999999999999999999999999984
No 301
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=99.52 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=63.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
....+|||+|||+.+|+++|.++|++||.|..|.++.+. ..|||||+|.+.++|..|+. +++..++|+..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 355799999999999999999999999999999999865 45799999999999999999 99999999543
No 302
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-14 Score=99.60 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=69.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+|||+|||+.+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+.. ++..+.| ..|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 3457999999999999999999999999999999998743 46999999999999999997 9999999 6777
Q ss_pred eeccccCC
Q 024221 182 VREYDHRR 189 (270)
Q Consensus 182 ~~~~~~~~ 189 (270)
|.....+.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 77766543
No 303
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=102.17 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=66.5
Q ss_pred CcccEEEecCCCCCCCHHHHH----HHHHhcCCceEEEEEec-CCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.+..+|||+|||+.+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+.| ..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CEE
Confidence 456799999999999998876 69999999999888653 556899999999999999999999999999 456
Q ss_pred eeecccc
Q 024221 181 RVREYDH 187 (270)
Q Consensus 181 ~~~~~~~ 187 (270)
.|.....
T Consensus 103 ~V~~a~~ 109 (127)
T 2a3j_A 103 VITFSET 109 (127)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6665543
No 304
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=98.59 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
.....+|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.| ..+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eEE
Confidence 34567999999999999999999999999998777666543 3699999999999999999999999999 556
Q ss_pred eeeccc
Q 024221 181 RVREYD 186 (270)
Q Consensus 181 ~~~~~~ 186 (270)
.|....
T Consensus 88 ~V~~a~ 93 (98)
T 2cqp_A 88 KLVLGS 93 (98)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 665544
No 305
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=100.28 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCcccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCC--cccccceeeeeee
Q 024221 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 181 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~ 181 (270)
..+..+|||+|||++ +++++|.++|.+||.|..|.++.. ++||||+|++.++|..|++.|++ ..+.| ..|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 446789999999998 999999999999999999999753 67999999999999999998864 56888 5566
Q ss_pred eecccc
Q 024221 182 VREYDH 187 (270)
Q Consensus 182 ~~~~~~ 187 (270)
|.....
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 655543
No 306
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-14 Score=95.26 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
......+|||+|||+.+++++|.++|..| .|..+.++.+.. .+||||+|.+.++|.+|+. |||..+.| ..|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEE
Confidence 34456799999999999999999999999 999999998743 3599999999999999999 99999999 566
Q ss_pred eeecccc
Q 024221 181 RVREYDH 187 (270)
Q Consensus 181 ~~~~~~~ 187 (270)
.|.....
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 6666544
No 307
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-14 Score=97.61 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
.......+|||+|||+.+++++|.++|.+||.|..|.++.+. ..+||||+|.+.++|++|+..+++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 344566899999999999999999999999999999998874 346999999999999999999998 8888 5
Q ss_pred eeeeecccc
Q 024221 179 YVRVREYDH 187 (270)
Q Consensus 179 ~i~~~~~~~ 187 (270)
.|.|.....
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 666666543
No 308
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-14 Score=94.23 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.+..+|||+|| .+++++|.++|.+||.|..|.+. ...+||||+|.+.++|.+|+..|||..+.| ..+.|...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEEC
Confidence 45679999996 89999999999999999999885 556799999999999999999999999998 66777776
Q ss_pred ccCC
Q 024221 186 DHRR 189 (270)
Q Consensus 186 ~~~~ 189 (270)
....
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5543
No 309
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=2.5e-14 Score=100.11 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=67.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
.+..+|||+|||+.+++++|.++|++||.|..+.++.+. ..+||||+|.+.++|..|+..|||..+.| ..+.|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 345799999999999999999999999999999998764 35799999999999999999999999999 4555554
Q ss_pred cc
Q 024221 185 YD 186 (270)
Q Consensus 185 ~~ 186 (270)
..
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 44
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.4e-13 Score=96.72 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=64.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCE-EEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecccc
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (270)
..|||+||++.+++++|.++|++||.|..|.+... .|| |||+|.+.++|..|++.|||..|.|.. ..++|...+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEecC
Confidence 46789999999999999999999999999999764 375 999999999999999999999998732 3556665544
No 311
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=2.9e-14 Score=95.02 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=66.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
..+|||+|||+.+++++|.++|++||.|..+.+..+. ..+||||+|.+.++|++|+ .|||..+.| ..+.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 4689999999999999999999999999999999874 3469999999999999999 999999999 666666
Q ss_pred cccc
Q 024221 184 EYDH 187 (270)
Q Consensus 184 ~~~~ 187 (270)
..+.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 6543
No 312
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=95.91 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=59.9
Q ss_pred cEEEecCCCCCC------CHHHHHHHHHhcCCceEEEEEec--CCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 109 ~~~~v~~l~~~~------t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.+|||+|||..+ ++++|.++|++||.|..+.+... ...|||||+|.+.++|.+|+..|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 78999999999999999998743 3457999999999999999999999999984
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.8e-14 Score=94.55 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=61.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC-CEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
...+|||+|||+.+++++|.++|.+||.|..| +.+... .||||+|.+.++|.+|+. |||..+.| ..+.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 34699999999999999999999999999987 333322 299999999999999999 99999999 55666544
Q ss_pred c
Q 024221 186 D 186 (270)
Q Consensus 186 ~ 186 (270)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 314
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=3.2e-14 Score=94.41 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=61.4
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
..+..+|||+|||+.+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|.+|++ +++..+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 80 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR 80 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence 34567999999999999999999999999999999998754 4599999999999999996 578888883
No 315
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.2e-14 Score=116.62 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhcCC-cccC---CceEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~---g~~i~v 77 (270)
.++++|||+|||+.+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..||+ ..+. |++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999843 577799999999999999999999954 4444 999999
Q ss_pred EEccCC
Q 024221 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=99.64 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=58.3
Q ss_pred CcccEEEe--cCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccc
Q 024221 106 RSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 106 ~~~~~~~v--~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
.+..+||| +||++.+++++|+++|++||.|..|.++.+ .+||||+|.+.++|++|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34578999 779999999999999999999999888653 67999999999999999999999988
No 317
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=104.37 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=65.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
...+|||+|||+.+++++|.++|..|| .|..|.++.+... |||||+|.+.++|++|+..|||..+.| ..|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 9999999988543 599999999999999999999999999 555
Q ss_pred eeecc
Q 024221 181 RVREY 185 (270)
Q Consensus 181 ~~~~~ 185 (270)
.|...
T Consensus 130 ~V~~a 134 (156)
T 3n9u_C 130 DVRPA 134 (156)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55543
No 318
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=98.67 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=67.8
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
+..+|||+|||..+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.| ..+.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 457999999999999999999999999999999998754 3599999999999999999999999999 55666
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
.....
T Consensus 83 ~~a~~ 87 (104)
T 1p1t_A 83 DNAAS 87 (104)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 65443
No 319
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-13 Score=93.49 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=67.0
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
...+..+|||+|||+.+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|+. ++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 334567999999999999999999999999999999998754 3599999999999999999 3667887 66
Q ss_pred eeeeccccC
Q 024221 180 VRVREYDHR 188 (270)
Q Consensus 180 i~~~~~~~~ 188 (270)
+.|......
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 777766554
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=101.71 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=67.0
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|++|+ .|||..+.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 3557999999999999999999999999999999987653 469999999999999999 999999999 5566
Q ss_pred eeccc
Q 024221 182 VREYD 186 (270)
Q Consensus 182 ~~~~~ 186 (270)
|....
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 66544
No 321
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=97.63 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=65.6
Q ss_pred cccEEEecCCCCCC------CHHHHHHHHHhcCCceEEEEEec--CCCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 107 SEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 107 ~~~~~~v~~l~~~~------t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
...+|||+|||+.+ ++++|.++|++||.|..|.++.. ...|||||+|.+.++|..|+..|||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~---~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ---H 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT---C
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC---c
Confidence 45799999999999 78999999999999999998832 3457999999999999999999999999993 1
Q ss_pred eeeeeccc
Q 024221 179 YVRVREYD 186 (270)
Q Consensus 179 ~i~~~~~~ 186 (270)
.+.|....
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 55555543
No 322
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.54 E-value=2e-14 Score=97.97 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=63.4
Q ss_pred cccEEEecCCCC------CCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCccccc-ce
Q 024221 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (270)
Q Consensus 107 ~~~~~~v~~l~~------~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g-~~ 175 (270)
...+|||+|||. .+++++|.++|++||.|..|.++.+.. .|||||+|.+.++|++|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356999999999 999999999999999999999998764 4699999999999999999999999998 54
No 323
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=92.19 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=61.0
Q ss_pred ccEEEecCCCCCCCHHH----HHHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 108 EYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
.+.|||.|||..+++++ |.++|.+|| +|..| .+|+|||.|.+.++|..|++.|+|..+.| ..|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEE
Confidence 34599999999999887 558999995 99888 24899999999999999999999999999 66777
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
...+..
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 766554
No 324
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=4.8e-14 Score=100.07 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=67.1
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
...+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+ .|||..+.| ..+.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 457999999999999999999999999999999987743 459999999999999999 899999999 66676
Q ss_pred ecccc
Q 024221 183 REYDH 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
...+.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 66543
No 325
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=5e-15 Score=106.50 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=63.6
Q ss_pred ceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHH
Q 024221 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l 125 (270)
++||.+|.-++.+..++..+... +.|...--... ............+|||+|||+++|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-----------------~~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-----------------DSEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-----------------CcccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 57888888887777766654322 22222210000 0001122334579999999999999999
Q ss_pred HHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 126 KDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 126 ~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
+++|++|| |..|.|+.+.. .+||||+|.+.++|++|+ .+|+..+.| ..|.|....
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i~V~~a~ 121 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYIELFLNS 121 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCCCCEECC
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEEEEEECC
Confidence 99999999 77999887753 469999999999999999 799999999 455555443
No 326
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.8e-14 Score=97.71 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCcccEEEecCCCCCCCHHHHH----HHHHhcCCceEEEEEec-CCCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
...+..+|||+|||..+++++|. ++|.+||.|..+.+... ...+||||+|.+.++|..|+..|||..+.| .
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----K 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----c
Confidence 34456799999999999999999 99999999999988743 345799999999999999999999999998 5
Q ss_pred eeeeecccc
Q 024221 179 YVRVREYDH 187 (270)
Q Consensus 179 ~i~~~~~~~ 187 (270)
.+.+.....
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 666665544
No 327
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=1.7e-14 Score=97.43 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=64.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEE
Confidence 3457999999999999999999999999998877776543 3599999999999999999999999999 5555
Q ss_pred eec
Q 024221 182 VRE 184 (270)
Q Consensus 182 ~~~ 184 (270)
|..
T Consensus 89 v~~ 91 (95)
T 2ek1_A 89 LSG 91 (95)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 328
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=8.9e-15 Score=99.73 Aligned_cols=77 Identities=18% Similarity=0.370 Sum_probs=64.1
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC-----CCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
......+|||+|||..+++++|.++|++|| |..+.++.+. ..|||||+|.+.++|.+|+ .|||..++| .
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g----~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----R 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----B
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----e
Confidence 344568999999999999999999999999 9999998775 3579999999999999999 899999999 4
Q ss_pred eeeeeccc
Q 024221 179 YVRVREYD 186 (270)
Q Consensus 179 ~i~~~~~~ 186 (270)
.+.|....
T Consensus 89 ~l~V~~a~ 96 (100)
T 2j76_E 89 RIRVDVAD 96 (100)
T ss_dssp CCCCEECC
T ss_pred EEEEEecc
Confidence 55555544
No 329
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6e-14 Score=96.29 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceE-EEEEecC---CCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~-~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
+......+|||+|||+.+++++|.++|.+||.|.. +.|+.+. ..|||||+|.+.++|++|+.. ++..++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---- 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR---- 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc----
Confidence 34456689999999999999999999999999987 7777653 357999999999999999997 99999994
Q ss_pred eeeeecc
Q 024221 179 YVRVREY 185 (270)
Q Consensus 179 ~i~~~~~ 185 (270)
.|.|...
T Consensus 85 ~i~v~~~ 91 (104)
T 1wg5_A 85 YIEIFKS 91 (104)
T ss_dssp CCEEEEE
T ss_pred EEEEEEC
Confidence 4555443
No 330
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=4.4e-14 Score=97.79 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=65.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
....+|||+|||..+++++|.++|+.||.|..|.++.+.. .|||||+|.+.++|.+|+..+ +..++| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 3567999999999999999999999999999999988753 469999999999999999976 488888 5666
Q ss_pred eeccccC
Q 024221 182 VREYDHR 188 (270)
Q Consensus 182 ~~~~~~~ 188 (270)
|.....+
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 6665544
No 331
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=1.8e-14 Score=92.74 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=59.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+|||+|||+.+++++|.++|++||.|..+.++.+.. .+||||+|.+.++|++|++ +|+..++|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 489999999999999999999999999999987753 4699999999999999998 9999999943
No 332
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=97.12 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=66.8
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
..+..+|||+|||+.+++++|.++|.+||.|..+ .......|||||+|.+.++|.+|+..|+|..+.| ..+.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3456899999999999999999999999998877 3333455799999999999999999999999999 5677766
Q ss_pred cccC
Q 024221 185 YDHR 188 (270)
Q Consensus 185 ~~~~ 188 (270)
....
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 5443
No 333
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=97.13 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=64.5
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.....+|||+|||+.+++++|+++|..| .|..|.|+.+.. .|||||+|.+.++|++|+ .+|+..++| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 3456799999999999999999999999 899999987643 579999999999999999 699999999 4555
Q ss_pred eecc
Q 024221 182 VREY 185 (270)
Q Consensus 182 ~~~~ 185 (270)
|...
T Consensus 87 V~~a 90 (109)
T 2dnn_A 87 VSPA 90 (109)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
No 334
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=100.36 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=65.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
....+..+|||+|||+.+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.|||..+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 444567899999999999999999999999999999998763 357999999999999999999999999994
No 335
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-13 Score=95.75 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=68.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce----eee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF----SRA 178 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~----~~~ 178 (270)
....+|||+|||+.+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|||..+.+.. ...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4567999999999999999999999999999999998863 359999999999999999999999997644 234
Q ss_pred eeeeeccc
Q 024221 179 YVRVREYD 186 (270)
Q Consensus 179 ~i~~~~~~ 186 (270)
.+.+....
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 55555544
No 336
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.9e-14 Score=95.19 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
.......+|||+|||+.+++++|+++|.+||. ..|.|+.+.. .+||||+|.+.++|++|++ +|+..+.|+ .
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr----~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR----Y 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc----E
Confidence 33455679999999999999999999999995 4999988763 3599999999999999995 799999994 4
Q ss_pred eeeecc
Q 024221 180 VRVREY 185 (270)
Q Consensus 180 i~~~~~ 185 (270)
|.|...
T Consensus 84 i~V~~~ 89 (102)
T 1wez_A 84 VELFLN 89 (102)
T ss_dssp CEEEEE
T ss_pred EEEEEC
Confidence 555443
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=9.8e-14 Score=97.84 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=66.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCE-EEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.-..|||+||++.+|+++|.++|++||.|..|.+.... +++ |||+|.+.++|+.|++.|||..+.|.. +.+++...
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~--~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTE--EEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCC--cEEEEEec
Confidence 34578899999999999999999999999999888765 455 999999999999999999999998843 44555554
Q ss_pred cc
Q 024221 186 DH 187 (270)
Q Consensus 186 ~~ 187 (270)
+.
T Consensus 104 k~ 105 (130)
T 3zzy_A 104 KL 105 (130)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 338
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.7e-14 Score=96.37 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=66.9
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCC-ceEEEEE-ec----CCCCEEEEEecCHHHHHHHHHHcC--Ccccccceeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RD----GSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRA 178 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~-i~~~~~~-~~----~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~ 178 (270)
+..+|||+|||+.+++++|.++|.+||. |..+.++ .+ ...+||||+|.+.++|..|+..|+ +..+.| .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g----~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG----H 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----B
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----C
Confidence 4579999999999999999999999998 9999887 44 345799999999999999999996 589998 5
Q ss_pred eeeeeccccC
Q 024221 179 YVRVREYDHR 188 (270)
Q Consensus 179 ~i~~~~~~~~ 188 (270)
.+.|....+.
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 6666666544
No 339
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=98.64 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=65.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCc-eEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i-~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (270)
.+..+|||+|||+.+++++|.++|..||.| ..|.|+.+. ..+||||+|.+.++|++|+.. |+..+.| ..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEEE
Confidence 456799999999999999999999999999 889998765 346999999999999999997 9999999 5555
Q ss_pred eecc
Q 024221 182 VREY 185 (270)
Q Consensus 182 ~~~~ 185 (270)
|...
T Consensus 88 v~~a 91 (114)
T 2cpy_A 88 VHVV 91 (114)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
No 340
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=2.1e-13 Score=102.61 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=65.6
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
......+|||+|||+.+++++|.++|.+||.|..|.+..+. ..+||||+|.+.++|++|+..|||..+.|+..
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34556899999999999999999999999999999998865 34699999999999999999999999999543
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=9.6e-14 Score=92.05 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhc----C-------CceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.+..+|||+|||+.+++++|.++|.+| | .|..+.+..+ .+||||+|.+.++|.+|+ .|||..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 346799999999999999999999999 8 8888888765 679999999999999999 9999999994
Q ss_pred e
Q 024221 175 F 175 (270)
Q Consensus 175 ~ 175 (270)
.
T Consensus 81 ~ 81 (87)
T 2hzc_A 81 S 81 (87)
T ss_dssp E
T ss_pred E
Confidence 3
No 342
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=92.29 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=60.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
++|||+|||+.+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|++|+..++ ..++|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 3799999999999999999999999999999987753 4699999999999999999999 8898843
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=8.8e-14 Score=92.50 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (270)
...+.++|||+|||+++++++|.++|++||.|..|.++.+ ..|||||+|.+.++|++ +++..+.+. ...+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~--g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIK--GISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEET--TEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccC--CEEEEEE
Confidence 3456689999999999999999999999999999999876 67899999999999883 566655421 1556665
Q ss_pred cccc
Q 024221 184 EYDH 187 (270)
Q Consensus 184 ~~~~ 187 (270)
...+
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 5544
No 344
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=4.4e-14 Score=93.88 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=64.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (270)
...+|||+|||+.+++++|+++|.+| .|..+.+. ...+||||+|.+.++|++|++.|||..+.| ..+.|....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 34689999999999999999999999 99999885 566799999999999999999999999999 556666543
No 345
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=6.8e-14 Score=100.25 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=66.8
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
+......+|||+|||+.+|+++|.++|++||. |..|.++.+.. .|||||+|.+.++|++|++ +|+..++|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 44456689999999999999999999999999 88999988755 3599999999999999999 99999999
Q ss_pred eeeeeeec
Q 024221 177 RAYVRVRE 184 (270)
Q Consensus 177 ~~~i~~~~ 184 (270)
..|.|..
T Consensus 115 -r~i~V~~ 121 (136)
T 2hgl_A 115 -RYIEVFK 121 (136)
T ss_dssp -SEEEEEE
T ss_pred -EEEEEEE
Confidence 4555543
No 346
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=94.11 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=63.9
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEE----ecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (270)
...+|||+|||+.+++++|.++|.+||.|.. .++ .....+||||+|.+.++|++|++ |||..+.| ..|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEE
Confidence 5679999999999999999999999998866 222 23567899999999999999999 99999998 56666
Q ss_pred eccccC
Q 024221 183 REYDHR 188 (270)
Q Consensus 183 ~~~~~~ 188 (270)
......
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 665543
No 347
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.49 E-value=2.1e-14 Score=95.88 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=63.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeec
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (270)
.+|||+|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.+ |.+|+..|||..+.| ..+.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEE
Confidence 4799999999999999999999999999999987643 569999999999 999999999999999 4455554
Q ss_pred cc
Q 024221 185 YD 186 (270)
Q Consensus 185 ~~ 186 (270)
..
T Consensus 77 a~ 78 (90)
T 2ki2_A 77 AN 78 (90)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 348
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-13 Score=92.42 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC----CCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
...+..+|||+|||+.+++++|.++|..|+ .+.++.+.. .+||||+|.+.++|++|+..||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 334567999999999999999999999774 455665543 3699999999999999999999999999 66
Q ss_pred eeeeccccCC
Q 024221 180 VRVREYDHRR 189 (270)
Q Consensus 180 i~~~~~~~~~ 189 (270)
|.|.......
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 7777766543
No 349
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=96.89 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=66.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
+......+|||+|||+.+++++|.++|..||. |..|.++.+.. .|||||+|.+.++|++|+. +|+..++|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 33445679999999999999999999999999 89999988755 3599999999999999999 99999999
Q ss_pred eeeeeeec
Q 024221 177 RAYVRVRE 184 (270)
Q Consensus 177 ~~~i~~~~ 184 (270)
..|.|..
T Consensus 88 -r~i~V~~ 94 (118)
T 2db1_A 88 -RYIEVFK 94 (118)
T ss_dssp -EEEEEEE
T ss_pred -eEEEEEE
Confidence 4455543
No 350
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=99.01 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=60.1
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec-C---CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-G---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~-~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+.....+|||+|||+.+++++|.++|..||.|..+.++.+ . ..|||||+|.+.++|++|+. ||+..++|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 3445689999999999999999999999999987444433 2 24699999999999999999 9999999954
No 351
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=97.08 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
......+|||+|||+.+++++|.++|..||. |..|.++.+.. .|||||+|.+.++|++|+. +|+..++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 3345679999999999999999999999888 89999987754 4699999999999999999 9999999843
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=99.39 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=66.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceE--------EEEE-ecCCCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~--------~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
.+..+|||+|||+.+++++|.++|.+||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 34579999999999999999999999999875 3333 34566799999999999999999999999999
Q ss_pred eeeeeeeccccC
Q 024221 177 RAYVRVREYDHR 188 (270)
Q Consensus 177 ~~~i~~~~~~~~ 188 (270)
..|.|......
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 66777766544
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=1.2e-13 Score=108.23 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=64.9
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCC----CEEEEEecCHHHHHHHHHHcCCcccccceeeeee
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (270)
..++|||+||++.+++++|+++|.+|| .|..|.|+.+... +||||+|.+.++|++||+.||+..|.|+ .|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr----~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----NP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB----CC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE----Ee
Confidence 456899999999999999999999999 9999999988543 5999999999999999999999999994 45
Q ss_pred eeec
Q 024221 181 RVRE 184 (270)
Q Consensus 181 ~~~~ 184 (270)
.|..
T Consensus 143 ~V~~ 146 (229)
T 3q2s_C 143 VVTP 146 (229)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=8.6e-14 Score=89.54 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=58.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecC----CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+|||+|||+.+++++|.++|++||.|..+.+..+. ..+||||+|.+.++|.+|+.. ++..+.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 58999999999999999999999999999998764 357999999999999999995 888898843
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=3.6e-13 Score=94.82 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=65.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
.+..+|||+|+ ++++++|.++|++||.|..|.+. ...+||||+|.+.++|+.|+..|||..+.| ..+.|...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEe
Confidence 45679999996 69999999999999999999886 556799999999999999999999999998 56666665
Q ss_pred ccC
Q 024221 186 DHR 188 (270)
Q Consensus 186 ~~~ 188 (270)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=91.08 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=59.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccc--ccceeeeeeeeec
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~--~g~~~~~~i~~~~ 184 (270)
...+|||+|||+.+++++|.++|.+||.|..+.++.+ ..+||||+|.+.++|++ +++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC----EEEEEEe
Confidence 3579999999999999999999999999999999876 56799999999999975 344444 44 5666666
Q ss_pred cccC
Q 024221 185 YDHR 188 (270)
Q Consensus 185 ~~~~ 188 (270)
..+.
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6554
No 357
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=95.06 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=60.3
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCc----eEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i----~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
....+|||+|||+.+|+++|+++|++||.| ..|.|+.+.. .|||||+|.+.++|++|+.. |+..+.|+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeE
Confidence 345799999999999999999999999975 6888887743 36999999999999999996 999999843
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=102.03 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=68.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceE--------EEEEecC----CCCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~--------~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
.+..+|||+|||..+++++|.++|.+||.|.. +.++.+. ..+||||+|.+.++|++|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34579999999999999999999999999988 7887763 34699999999999999999999999998
Q ss_pred ceeeeeeeeeccccC
Q 024221 174 AFSRAYVRVREYDHR 188 (270)
Q Consensus 174 ~~~~~~i~~~~~~~~ 188 (270)
..+.|......
T Consensus 85 ----~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ----NPIKVSFATRR 95 (116)
Confidence 56666665544
No 359
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=2.9e-13 Score=95.44 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=60.0
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHhcCCce--EEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 104 ~~~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~--~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
......+|||+|||+.+++++|+++|++| .|. .|.|+.+.. .|||||+|.+.++|++|+.. ++..++|+.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 33456789999999999999999999999 676 888887643 57999999999999999985 779999843
No 360
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-12 Score=90.90 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecC-HHHHHHHHHhcC--CcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~~~g~~i~v~~ 79 (270)
.+.+.|||+||++. ++.++|+++|+.||+|..|.+..+ ...|||.|.+ +++|..|+..|| +..|.|..+++++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 999999999999999999999643 3379999999 899999999995 7889999999987
Q ss_pred cc
Q 024221 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 361
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.39 E-value=7.6e-13 Score=90.44 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=60.2
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
....+|||+|||+.+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|++|+. ++..++|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 3567999999999999999999999999999999998763 2599999999999999999 77778773
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=93.18 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=55.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEec-------CCCCEEEEEecCHHHHHHHHHHc---CCccc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------GSGTTGIVDYTNYDDMKHAIKKL---DDSEF 171 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~-------~~~~~~fv~f~~~~~a~~a~~~l---~g~~~ 171 (270)
...+|||+|||+.+++++|.++|.+||.|. +.++.+ ...|||||+|.+.++|++|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 457999999999999999999999999999 777654 34579999999999999999998 55533
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.7e-12 Score=89.90 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=62.4
Q ss_pred cEEEecCC----CCCCCHHHHHHHHHhcCCceEEEEEecCCCC----EEEEEecC----HHH----HHHHHH--HcCCcc
Q 024221 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN----YDD----MKHAIK--KLDDSE 170 (270)
Q Consensus 109 ~~~~v~~l----~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~----~~~----a~~a~~--~l~g~~ 170 (270)
..|||+|| |+.+++.+|+++|+.||+|..+.++.|+.+| ||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999998774 99999996 433 888988 789999
Q ss_pred cccceeeeeeeeecc
Q 024221 171 FRNAFSRAYVRVREY 185 (270)
Q Consensus 171 ~~g~~~~~~i~~~~~ 185 (270)
|+| +.|+|...
T Consensus 83 I~G----r~irV~ln 93 (136)
T 2j8a_A 83 IMG----FKFEVILN 93 (136)
T ss_dssp ETT----EEEEEEEC
T ss_pred ecC----cEEEEEEC
Confidence 999 55555533
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.7e-12 Score=87.18 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=64.4
Q ss_pred CcccEEEecCCCCCCC-----------HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 106 RSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.+..+|+|.||..... +++|.++|.+||.|..|.|......|||||+|.+.++|.+|+..|||..+.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG- 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 4567999999944332 5899999999999999977544567899999999999999999999999999
Q ss_pred eeeeeeeeecccc
Q 024221 175 FSRAYVRVREYDH 187 (270)
Q Consensus 175 ~~~~~i~~~~~~~ 187 (270)
..|.+....+
T Consensus 92 ---r~l~v~~a~~ 101 (112)
T 2dit_A 92 ---RQITAQAWDG 101 (112)
T ss_dssp ---EECEEEECCS
T ss_pred ---cEEEEEEeCC
Confidence 5666666544
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=1.5e-12 Score=101.58 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCcccEEEecCCCCCC---------CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccc----
Q 024221 105 RRSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF---- 171 (270)
Q Consensus 105 ~~~~~~~~v~~l~~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~---- 171 (270)
.....+|||+||+..+ ++++|.++|++||.|..|.++.. .+||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4456799999999998 79999999999999999999864 57999999999999999999999999
Q ss_pred --------ccceeeeeeeeecccc
Q 024221 172 --------RNAFSRAYVRVREYDH 187 (270)
Q Consensus 172 --------~g~~~~~~i~~~~~~~ 187 (270)
.| ..|.|.+...
T Consensus 209 ~~e~~~~~~g----r~L~V~wA~~ 228 (240)
T 3u1l_A 209 DKEWDDRREG----TGLLVKWANE 228 (240)
T ss_dssp STTGGGGGGS----CCCEEEECC-
T ss_pred cccccccCCC----CEEEEEEccC
Confidence 55 5667776654
No 366
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=5.2e-12 Score=86.37 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=59.8
Q ss_pred CcccEEEecCCCC-----CCCHHHHHHHHHhcCCceEEEEEecC-----CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 106 RSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 106 ~~~~~~~v~~l~~-----~~t~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
.+..+|+|.||.. +.++++|+++|++||.|..+.++.++ ..|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456899999863 23789999999999999999999763 3579999999999999999999999999944
No 367
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.2e-12 Score=81.94 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 3 SRASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 3 ~~~~~~v~v~nl~----~~~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
+-|.-||+|.-.+ .+.-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3467788887766 23434 66889999999999999973 459999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 024221 75 LRVELAHGG 83 (270)
Q Consensus 75 i~v~~~~~~ 83 (270)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998753
No 368
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2e-11 Score=93.06 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhc--CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHh
Q 024221 54 EARDAEDAIRGR--DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR 131 (270)
Q Consensus 54 ~~~~a~~A~~~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~ 131 (270)
+.+.+..|+... ....+.+....|..... .+.+... ..........+|||+|||+.+++++|.++|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-~p~p~~~---------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 132 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-KPLPEVT---------DEYKNDVKNRSVYIKGFPTDATLDDIKEWLED 132 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-SCCCCCC---------HHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-CCCcccc---------hhhhhccccCEEEecCCCCcCCHHHHHHHHhc
Confidence 667788888866 45555555455543311 0000000 00001123569999999999999999999999
Q ss_pred cCCceEEEEEecCC---CCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeecc
Q 024221 132 AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (270)
Q Consensus 132 ~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (270)
||.|..|.+..+.. .|||||+|.+.++|..|+..++ ..+.| ..+.|.+.
T Consensus 133 ~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~~ 184 (193)
T 2voo_A 133 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILFK 184 (193)
T ss_dssp SCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEET
T ss_pred CCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEEh
Confidence 99999999998654 3699999999999999998665 48888 44555443
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=9.3e-12 Score=102.36 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCcccEEEecC--CCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccc
Q 024221 105 RRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (270)
Q Consensus 105 ~~~~~~~~v~~--l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (270)
..+..+|||+| |+..+++++|.++|++||.|..|.+.. .++||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 44567999999 578999999999999999999887754 5689999999999999999999999884
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=3.4e-11 Score=82.28 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=58.2
Q ss_pred cccEEEecCC--CCCC--------CHHHHHHHHHhcCCceEEEEEecC------CCCEEEEEecCHHHHHHHHHHcCCcc
Q 024221 107 SEYRVLVTGL--PSSA--------SWQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (270)
Q Consensus 107 ~~~~~~v~~l--~~~~--------t~~~l~~~f~~~g~i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (270)
+...|.+.|+ +..+ ..++|+++|++||.|..+.|+.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457888886 3233 247899999999999999998764 35799999999999999999999999
Q ss_pred ccccee
Q 024221 171 FRNAFS 176 (270)
Q Consensus 171 ~~g~~~ 176 (270)
++|+..
T Consensus 84 f~GR~i 89 (105)
T 3v4m_A 84 FANRVV 89 (105)
T ss_dssp ETTEEC
T ss_pred eCCCEE
Confidence 999543
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=9.5e-11 Score=81.07 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=58.6
Q ss_pred cccEEEecCCCCCC----------CHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 107 SEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 107 ~~~~~~v~~l~~~~----------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
+...|.+.|+=... .+++|.++|++||.|..|.+..+...|+|||+|.+.++|.+|+..|||..++|+..
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44577787752211 24688999999999999999888778999999999999999999999999999544
Q ss_pred e
Q 024221 177 R 177 (270)
Q Consensus 177 ~ 177 (270)
.
T Consensus 86 ~ 86 (114)
T 3s6e_A 86 T 86 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.18 E-value=8.1e-11 Score=82.00 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=59.0
Q ss_pred cccEEEecCCCC-----CCCHHHHHHHHHhcCCceEEEEEecCC--------CCEEEEEecCHHHHHHHHHHcCCccccc
Q 024221 107 SEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (270)
Q Consensus 107 ~~~~~~v~~l~~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (270)
+..+|++.|+-. +-.+++|.++|++||.|..|.|+.+.. .|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456888888732 124789999999999999999988753 2699999999999999999999999999
Q ss_pred ceee
Q 024221 174 AFSR 177 (270)
Q Consensus 174 ~~~~ 177 (270)
+...
T Consensus 99 R~i~ 102 (118)
T 3ue2_A 99 RKVV 102 (118)
T ss_dssp EECE
T ss_pred cEEE
Confidence 5543
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-10 Score=77.14 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeeeeeeeccccC
Q 024221 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (270)
Q Consensus 117 ~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (270)
+..+++++|.++|.+||.|..|.++ ....|||||+|.+.++|+.|+..+++ +.| ..+.|.+....
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 3568999999999999999999998 45678999999999999999998655 345 55667666544
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=9.1e-11 Score=76.44 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 3 SRASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 3 ~~~~~~v~v~nl~~~-----~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
+-|.-||+|.-++.. .-+ .+|.+.|..||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 357789999877643 223 568899999999999999733 49999999999999999 999999999
Q ss_pred eEEEEEc
Q 024221 74 RLRVELA 80 (270)
Q Consensus 74 ~i~v~~~ 80 (270)
.|+|.+-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999865
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.5e-10 Score=80.21 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCCCcccEEEecCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecC-HHHHHHHHHHcC--Ccccccce
Q 024221 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNAF 175 (270)
Q Consensus 103 ~~~~~~~~~~v~~l~~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--g~~~~g~~ 175 (270)
...+++..|+|+||+.. ++.++|+++|++||.|.+|.+..+.. .|||.|.+ ..+|..|+..++ +..|.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 45567789999999999 99999999999999999999988877 79999999 899999999994 67777743
No 376
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.15 E-value=1.5e-11 Score=83.93 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=53.0
Q ss_pred ecCCCCCCCHHHHHHHH------------HhcCCceEEEEEecC---CCCEEEEEecCHHHHHHHHHHcCCcccccce
Q 024221 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (270)
Q Consensus 113 v~~l~~~~t~~~l~~~f------------~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (270)
+.||+..+++++|.+.| ++||.|..|.++.+. ..|||||+|.+.++|.+|+..|||..++|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45667777777776655 999999999998775 3579999999999999999999999999944
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=4.6e-10 Score=87.65 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEeec-------CCCCCceEEEEecCHHHHHHHHHhcCCcccCCc
Q 024221 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (270)
Q Consensus 6 ~~~v~v~nl~~-----~~t~~~l~~~F~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
+..+.+.|+-. .-.+++|.+.|++||+|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555522 245678999999999999999942 237789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 024221 74 RLRVELAH 81 (270)
Q Consensus 74 ~i~v~~~~ 81 (270)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=3.8e-09 Score=68.53 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=55.2
Q ss_pred cccEEEecCCCC----CCCH----HHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 107 SEYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 107 ~~~~~~v~~l~~----~~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
+..+|+|.-++. ++.. .+|.+.|.+||.|..+.++.+ .+||+|.+.++|.+|+. |||..+.| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 345666666552 2333 678999999999999999988 49999999999999998 99999999 4
Q ss_pred eeeeecc
Q 024221 179 YVRVREY 185 (270)
Q Consensus 179 ~i~~~~~ 185 (270)
.++|...
T Consensus 77 ~LkV~lk 83 (91)
T 2dnr_A 77 TITIALK 83 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 4555443
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.3e-08 Score=66.40 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
..++|-|-|||..+++..|+.|++.+ |.|..|.+..+ .+=|+|+|.+...|.+|.-.|||..|.|+.|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 47899999999999999999999999 99999999633 4689999999999999987899999999999996
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2.9e-08 Score=64.64 Aligned_cols=69 Identities=10% Similarity=0.195 Sum_probs=56.3
Q ss_pred cccEEEecCCCCC-----CCH----HHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 107 SEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 107 ~~~~~~v~~l~~~-----~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
+..+|+|.-++.. +.. .+|.+.|.+||.|..+.+..+ -+||+|.+.++|.+|+. |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G---- 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG---- 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT----
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC----
Confidence 4568888877643 222 568999999999999999998 49999999999999999 99999999
Q ss_pred eeeeeec
Q 024221 178 AYVRVRE 184 (270)
Q Consensus 178 ~~i~~~~ 184 (270)
+.++|..
T Consensus 85 r~L~V~~ 91 (95)
T 1ufw_A 85 RAVKISG 91 (95)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 4555543
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.4e-07 Score=61.43 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEE
Q 024221 4 RASRTLYVGNLPGDI-R----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~-t----~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 78 (270)
.-.++|+|+||+..+ + .+.+.++|..|+++...... ++-.-..|.|.++++|.+|-..||+..|.|..|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---CcceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 357899999998865 3 25678999999999888876 344578999999999999999999999999999999
Q ss_pred EccC
Q 024221 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
++..
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9984
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=5.8e-07 Score=59.29 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..++|.|.|||+.+.++.|.-+|+.- |+|..+... .+-|+|+|.+.+.|+..+. -....|.|..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 46899999999999999999999972 689999886 2789999999999999998 446788899999976
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCC
Q 024221 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t 121 (270)
.... ....+++.+|++.++
T Consensus 81 ~~~~-----------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPR-----------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCCC-----------------------CCCCCCCCSCCCCCC
T ss_pred CCCC-----------------------CcceEeeecCCCCCC
Confidence 4322 234677788877654
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=6e-07 Score=69.81 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCC--------CCEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 120 ASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 120 ~t~~~l~~~f~~~g~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
-.+++|.+.|++||.|..+.+..+.. .|++||+|.+.++|.+|+..|||..++|+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 35789999999999999999985533 26999999999999999999999999996543
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.5e-06 Score=56.00 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=60.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhc-----CCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccccccee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (270)
..+|-+-|||..++...|..+..++ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|.|+..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 4688999999999999999999999 9999998888765 69999999999999999999999998543
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.23 E-value=9.8e-06 Score=52.83 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-----CCCCceEEEEecCHHHHHHHHHhcCCcccC---Cc--eEE
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--RLR 76 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~--~i~ 76 (270)
+.|.|.+||+.+|++++.+.+..+..+....+... .....-|||.|.+.+++......++|..|. |. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999988877666332 233468999999999999999999998874 22 224
Q ss_pred EEEccC
Q 024221 77 VELAHG 82 (270)
Q Consensus 77 v~~~~~ 82 (270)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=1.1e-05 Score=54.97 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC-ceEEEEEc
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~i~v~~~ 80 (270)
..+.|.|-+.|+.. ...|...|++||+|...... ...++..|.|.+..+|++||. .||..|.| --|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35678999999985 67788899999999988772 345799999999999999999 89999985 55666654
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=2.5e-05 Score=50.85 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
...++| ++|+.+...||.++|+.||.|.--.|. -..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhc
Confidence 345666 999999999999999999966544443 349999999999999999976
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.81 E-value=3.1e-05 Score=50.61 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
..++| ++|+.+.-.||.++|+.||.|.--.|. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999944333333 2489999999999999999764
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.70 E-value=0.00021 Score=46.48 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (270)
....++| ++|+.+...||.++|+.||.|..-.+... .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT----EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 3456667 99999999999999999996654444322 89999999999999999764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.68 E-value=0.00013 Score=47.73 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecC-----CCCCceEEEEecCHHHHHHHHHhcCCcccCCc-----eE
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RL 75 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~i 75 (270)
+-.|.|..||+.+|++++.+.+..+-++....+... .....-|||.|.+.+++......++|..|.+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457899999999999998887776655433332211 12235899999999999999999999887432 33
Q ss_pred EEEEcc
Q 024221 76 RVELAH 81 (270)
Q Consensus 76 ~v~~~~ 81 (270)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 456653
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00035 Score=45.46 Aligned_cols=69 Identities=14% Similarity=0.360 Sum_probs=58.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC------CEEEEEecCHHHHHHHHHHcCCcccccceee
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (270)
++|.|.+||+.+|++++.+.+.....+.......++.. .-|||.|.+.+++..-.+.++|..+-+....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 47899999999999999999999988877777666432 2799999999999999999999988765443
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=0.00018 Score=47.68 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=56.0
Q ss_pred cEEEecCCCCCC-C----HHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccceeeee
Q 024221 109 YRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (270)
Q Consensus 109 ~~~~v~~l~~~~-t----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (270)
++|+|+||+..+ . ++.++++|..|+.+........-. -..|.|.++++|.+|...||+..+.|...+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 589999998866 2 367899999999988766665533 57899999999999999999999999644433
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.53 E-value=0.00014 Score=50.25 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-eec---------------CC-CCCceEEEEecCHHHHHHHHHhcCC
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
...-|.|-+.|+..+ ..|.+.|++||.|.+-. +.. +. ...+...|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 455677888876655 56778899999997722 110 11 135688999999999999999 999
Q ss_pred cccCCceEEEEEcc
Q 024221 68 YDFDGHRLRVELAH 81 (270)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (270)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877787653
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00083 Score=45.79 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=53.9
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCcccccc
Q 024221 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (270)
Q Consensus 106 ~~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (270)
.....|.|.+.|+.. ...|...|++||.|..... ......-.|.|.+..+|++|+. .||..++|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 456789999999885 6778899999999988776 3344589999999999999999 699998853
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00024 Score=46.38 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=43.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcC
Q 024221 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (270)
Q Consensus 109 ~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (270)
..++| ++|+.+...+|.++|+.||.|. |..+.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999443 3333332 79999999999999999764
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.0026 Score=41.97 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHh---c--CCceEEEEEecCCCCEEEEEecCHHHHHHHHHH
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (270)
..+|.|.|||+.+.++.|.-+|.. - |.|..+.... ..|+|+|.+.+.|+..+.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 468999999999999999999986 2 4677776655 4899999999999999885
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.03 E-value=0.00033 Score=59.66 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHH
Q 024221 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 5 ~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
..++|||. .|..+++.+|.++|++||+|..+.+..+. .-||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789996 89999999999999999999999985432 3699999999999987776
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.71 E-value=0.0017 Score=42.46 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=53.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC------CEEEEEecCHHHHHHHHHHcCCcccccceeee
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (270)
..+|.|..||+.+|++++.+.+...-.+.......+... .-|||.|.+.++...-.+.++|..+-+...+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 358999999999999998887776555433333222211 26899999999999999999999987755443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.03 E-value=0.0095 Score=41.18 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=47.5
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEE-EEe--------------cC---CCCEEEEEecCHHHHHHHHHHcCC
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-VFR--------------DG---SGTTGIVDYTNYDDMKHAIKKLDD 168 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~-~~~--------------~~---~~~~~fv~f~~~~~a~~a~~~l~g 168 (270)
....|.|.+.|+..+ ..+.+.|++||.|..-. ... -+ ......|.|.+..+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 345788888876654 45678899999986621 110 01 23477999999999999999 899
Q ss_pred cccccc
Q 024221 169 SEFRNA 174 (270)
Q Consensus 169 ~~~~g~ 174 (270)
..++|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 999983
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.27 E-value=0.012 Score=50.27 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=41.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHH
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (270)
...|+|. .|..+++.+|.++|++||.|..+.+..+. +.||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 3578887 68899999999999999999999887643 3599999999999887754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.43 E-value=0.094 Score=45.58 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
..++|+ +|+.+...+|.++|+.||.|.-..+. ...|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 467776 99999999999999999966443332 3589999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.54 E-value=0.43 Score=29.52 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=45.6
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhcC-----CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEcc
Q 024221 8 TLYVGNL-PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (270)
Q Consensus 8 ~v~v~nl-~~~~t~~~l~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~ 81 (270)
++||..- ...+++.+|..++..-+ .|-.|.+. ..|.||+-.. +.|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5677422 44588889999888655 35556664 4599999987 56888899999999999999998763
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.71 E-value=1.3 Score=38.53 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=43.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCC
Q 024221 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (270)
Q Consensus 108 ~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (270)
...++|+ +|..+...+|.++|+.||.+. |..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 4566665 888999999999999999543 333333 2799999999999999998753
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.64 E-value=4.4 Score=25.62 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=52.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEE
Q 024221 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (270)
Q Consensus 4 ~~~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 79 (270)
..+|-|.|-|||..+-..++.-.....|---.|... -|.|+|.|.+.+.-..|+..|-+. ....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 457888999999999988888778888877777765 579999999999988888764221 244555544
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.99 E-value=3.2 Score=30.08 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=39.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEeecCCCCCceEEEEecCHHHHH-HHHH
Q 024221 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEARDAE-DAIR 63 (270)
Q Consensus 8 ~v~v~nl~~-~--------~t~~~l~~~F--~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~-~A~~ 63 (270)
++.|-|+|. . ....+|.+.| ..|.++.-..+.......|+|.|+|..--..- .|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456778887 2 4557899977 89999886666544556789999997654443 3444
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.45 E-value=17 Score=22.88 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=47.4
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCEEEEEecCHHHHHHHHHHc
Q 024221 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 107 ~~~~~~v~~l~~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (270)
..+-+.|-|+|..+-..++.-...-.|---+|..+.+ -|.+.|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 4567889999999999999888888887777777655 7899999999999888876
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=55.70 E-value=1.8 Score=30.68 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCCeeEEEeecCCCCCceEEEEec
Q 024221 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+|+.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4666778888888766543 899999986
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.34 E-value=41 Score=21.16 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=41.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCCC-EEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (270)
+.++..+...++..+|++.+.. |+ .|..+....-+.+. -|+|.+..-.+|.+...++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4455566788999999999976 56 56677666554433 7999999888887766544
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.64 E-value=8.4 Score=22.82 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=13.4
Q ss_pred CCeeEEEeecCCCCCceEEEEecCH
Q 024221 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|.|..|.. .++.|||.|.|-
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 45555442 367999999874
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=49.33 E-value=48 Score=21.01 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=25.5
Q ss_pred eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCC
Q 024221 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
|..+.++ ...+||.||++...+++..++..+.|
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 5555543 34789999999999998888887766
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=44.28 E-value=73 Score=22.17 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=40.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCCC-EEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (270)
+.|+..+...++.-+|++.+.. |+ .|..|..+.-+.+. -|||.+..-.+|.+...++
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 5666667889999999998865 56 56666666554433 6999998877777665543
No 412
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.22 E-value=11 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=13.3
Q ss_pred CCeeEEEeecCCCCCceEEEEecCH
Q 024221 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|.|..|. ..++.|||.|.+.
T Consensus 45 GTI~kV~-----~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVD-----SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE-----TTTTEEEEEETTS
T ss_pred EEEEEec-----cCCCEEEEEEcCC
Confidence 4555443 3367999999874
No 413
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=43.23 E-value=34 Score=22.49 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred CeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc
Q 024221 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (270)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
.|.++... ...+||-|||=.++.++..|+..+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35555443 456999999999999999999976654
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=41.90 E-value=80 Score=22.18 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=40.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCCC-EEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (270)
+.|+..+...++.-+|++.+.. |+ .|..|..+.-+.+. -|||.+....+|.+...++
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 4566667888999999998865 56 56666666554433 7999998877777665543
No 415
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.45 E-value=64 Score=20.26 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCC--eeEEEeecCCCCCceEEEEecCHHHHHHHHH
Q 024221 9 LYVGNLPGDIREREVEDLFYKYGP--IAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~G~--v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+-.+...+|..+|++.++.+-. |..|.........--|||++....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344467889999999999986544 4444443333344579999988777776444
No 416
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=39.83 E-value=15 Score=21.77 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.2
Q ss_pred CCCceEEEEecCH
Q 024221 43 RPPGYAFVEFEEA 55 (270)
Q Consensus 43 ~~~g~afV~f~~~ 55 (270)
...+.|+|.|.+-
T Consensus 39 ~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 39 ILKQSCFIIFEDS 51 (66)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3478999999873
No 417
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=39.23 E-value=28 Score=27.22 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~ 36 (270)
...+.|+|||++++..-|..++.. +.+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 346789999999999999999987 555433
No 418
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.52 E-value=22 Score=22.85 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=15.3
Q ss_pred EEcCCCCCCCHHHHHHHHhh
Q 024221 10 YVGNLPGDIREREVEDLFYK 29 (270)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~ 29 (270)
+|.+|.+.+|..||...+.+
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~ 39 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQ 39 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHHHHh
Confidence 35588899999999885544
No 419
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=36.65 E-value=64 Score=20.20 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CeeEEEeecCCCCCceEEEEecCHHHHHHHHH
Q 024221 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 9 v~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+-.+...+|..+|++.++.+ | .|..|.........--|||++....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 3444678899999999998854 3 44444443333334579999988776655443
No 420
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=35.68 E-value=14 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=24.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~ 36 (270)
...+.|+|||++++..-|..+++....+..+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~ 144 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQ 144 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEE
Confidence 3567899999999999999999865444443
No 421
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=35.03 E-value=98 Score=20.49 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=19.4
Q ss_pred CCceEEEEecCHH-----HHHHHHHhcCC
Q 024221 44 PPGYAFVEFEEAR-----DAEDAIRGRDG 67 (270)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~A~~~l~g 67 (270)
.+||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6799999998776 77777877766
No 422
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=34.28 E-value=65 Score=27.14 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=41.2
Q ss_pred eEEEcCCCCCC----CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCce
Q 024221 8 TLYVGNLPGDI----REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (270)
Q Consensus 8 ~v~v~nl~~~~----t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
--+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|..++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34788875422 235677888899999888773 345677889999998886 3455555443
No 423
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=33.50 E-value=83 Score=22.17 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCCC-EEEEEecCHHHHHHHHHHc
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (270)
+.|+..+...++.-+|++.+.. |+ .|..|..+.-+.+. -|||.+..-.+|.+....+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
No 424
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=33.16 E-value=42 Score=21.81 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCHHHHHHHHhhcCCeeEEEee
Q 024221 18 IREREVEDLFYKYGPIAHIDLK 39 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~ 39 (270)
.+++.|.++|+.+|+|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4677899999999999988875
No 425
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=32.47 E-value=1.2e+02 Score=20.64 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhcC-CceEEEEEecCCCCEEEEEecCHHHHHHHHHHcCCccc
Q 024221 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (270)
Q Consensus 121 t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (270)
.-..+.+.+...| .|..+..........+.+.+++.+.|.+++.. .|..+
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 4456667777766 55454443222334566788888888888875 44443
No 426
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=31.35 E-value=25 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.0
Q ss_pred CceEEEEecCH
Q 024221 45 PGYAFVEFEEA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
...|+|.|.+.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56999999874
No 427
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=31.12 E-value=84 Score=22.96 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=30.8
Q ss_pred EcCCCCCCCHHH--------HHHHHhhcCCeeEEEeecCCCCCceEEEEecCH
Q 024221 11 VGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (270)
Q Consensus 11 v~nl~~~~t~~~--------l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+=-||..++.++ +.++|..+|-|.++-|..++.....|-|-|.+-
T Consensus 75 ~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 75 EFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 338999999888 445666678888888865444445677766553
No 428
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=28.96 E-value=42 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.8
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 024221 12 GNLPGDIREREVEDLFYKYG 31 (270)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G 31 (270)
|.|+..+|+++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 68899999999999999864
No 429
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=26.64 E-value=46 Score=25.63 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKY 30 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~ 30 (270)
..+.|+|||++++...|..+++..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 358899999999999988888754
No 430
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.47 E-value=58 Score=22.75 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=26.1
Q ss_pred eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc
Q 024221 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
|..+.++ ...+||.||++...+++..++..+.|.
T Consensus 33 i~~v~vp--~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAP--SRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEee--cCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5555553 246899999999998888899877763
No 431
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=26.46 E-value=45 Score=15.21 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=10.3
Q ss_pred CHHHHHHHHhhc
Q 024221 19 REREVEDLFYKY 30 (270)
Q Consensus 19 t~~~l~~~F~~~ 30 (270)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 432
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.33 E-value=99 Score=17.80 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=40.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhc
Q 024221 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..++.|.++.-.-=...|...+.. ..|..+.+.. ..+.+.|+|.+.+....++..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---cCCEEEEEECCHHHHHHHHHHc
Confidence 356788888776667888888888 8888888852 2457788888666666777643
No 433
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=25.57 E-value=61 Score=27.04 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=35.1
Q ss_pred EEcCCCC---CCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCC
Q 024221 10 YVGNLPG---DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (270)
Q Consensus 10 ~v~nl~~---~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+|||+.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcC
Confidence 4566532 22345577888999999887762 233566678888877765 34444433
No 434
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.17 E-value=41 Score=25.81 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC
Q 024221 7 RTLYVGNLPGDIREREVEDLFYKYG 31 (270)
Q Consensus 7 ~~v~v~nl~~~~t~~~l~~~F~~~G 31 (270)
..+.|+|||++++..-|..+++...
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 4588999999999999999997543
No 435
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.08 E-value=21 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 024221 8 TLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~~G~v~~~ 36 (270)
...|+|||++++...|..+++..+.+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 45899999999999999999865555433
No 436
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.94 E-value=49 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh
Q 024221 8 TLYVGNLPGDIREREVEDLFYK 29 (270)
Q Consensus 8 ~v~v~nl~~~~t~~~l~~~F~~ 29 (270)
..+|+|||++++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999999998875
No 437
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.88 E-value=49 Score=29.63 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHh----hcCCeeEEEeec--CCCCCceEEEEecCHHHHHHHHHhc
Q 024221 13 NLPGDIREREVEDLFY----KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGR 65 (270)
Q Consensus 13 nl~~~~t~~~l~~~F~----~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..+.+.+--||..+|- .+|-|..+.|.. -.....++++.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555567888883 788999998843 2333467889999999999988765
No 438
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.07 E-value=1.9e+02 Score=20.40 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=39.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHh-cC-CceEEEEEecCCCC-EEEEEecCHHHHHHHHHH
Q 024221 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (270)
Q Consensus 110 ~~~v~~l~~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~ 165 (270)
+.|+..+...++.-+|.+.+.. || .|..|..+.-..+. -|||.+..-.+|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4566667889999999998865 66 66667666544332 699999877665555443
No 439
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.46 E-value=32 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=13.8
Q ss_pred CHHHHHHHHhhcCCeeEE
Q 024221 19 REREVEDLFYKYGPIAHI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~ 36 (270)
|--||.+++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 556899999999977543
No 440
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=23.44 E-value=65 Score=24.51 Aligned_cols=115 Identities=10% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEec---CHHHHHHH---HHhcCCccc---CCceEEEEEccCCCC
Q 024221 15 PGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE---EARDAEDA---IRGRDGYDF---DGHRLRVELAHGGRG 85 (270)
Q Consensus 15 ~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~---~~~~a~~A---~~~l~g~~~---~g~~i~v~~~~~~~~ 85 (270)
..++...+|.++|..++.+..+.+..+..-+|..-+.+. +.+++..+ +-..+|..+ .|..+.|..+.....
T Consensus 10 sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~~~ 89 (241)
T 3ezj_A 10 TANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKV 89 (241)
T ss_dssp CCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-----
T ss_pred EEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHhhh
Confidence 334455567777777777777777555555676666664 45555544 334788654 589999887653322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHhc
Q 024221 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~t~~~l~~~f~~~ 132 (270)
....... ...............+.+.+....--...|..++...
T Consensus 90 ~~~~~~~---~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 90 EPLPLVG---EGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp -----------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred cCCcccc---CCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 1110000 0000000111122345555555555566777777766
No 441
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=23.32 E-value=1.4e+02 Score=19.29 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCeEEEcCCCCCCCHHH--HHHHH----hh----cC-----CeeEEEeec---C--CCCCceEEEEecCHHH---HHHHH
Q 024221 6 SRTLYVGNLPGDIRERE--VEDLF----YK----YG-----PIAHIDLKI---P--PRPPGYAFVEFEEARD---AEDAI 62 (270)
Q Consensus 6 ~~~v~v~nl~~~~t~~~--l~~~F----~~----~G-----~v~~~~~~~---~--~~~~g~afV~f~~~~~---a~~A~ 62 (270)
-+.|.|-+||....+.. +..+| .. .+ .|..+.-.. + ........|.|....+ ..+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36788999999743222 33333 22 22 233333211 1 1234467777766554 45555
Q ss_pred HhcCCcccCCceEEEE
Q 024221 63 RGRDGYDFDGHRLRVE 78 (270)
Q Consensus 63 ~~l~g~~~~g~~i~v~ 78 (270)
...+...+.|.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5566678899999874
No 442
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.25 E-value=49 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=17.0
Q ss_pred cCCCCCCCHHHHHHHHhhc
Q 024221 12 GNLPGDIREREVEDLFYKY 30 (270)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~ 30 (270)
|.|+..+++++|.++++..
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999999876
No 443
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.88 E-value=50 Score=14.78 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcC
Q 024221 20 EREVEDLFYKYG 31 (270)
Q Consensus 20 ~~~l~~~F~~~G 31 (270)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 356788888876
No 444
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.86 E-value=64 Score=16.54 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHHhhc
Q 024221 15 PGDIREREVEDLFYKY 30 (270)
Q Consensus 15 ~~~~t~~~l~~~F~~~ 30 (270)
..+++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3468999999999865
No 445
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.83 E-value=48 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.629 Sum_probs=15.7
Q ss_pred ecCCCCCC-CHHHHHHHHHh
Q 024221 113 VTGLPSSA-SWQDLKDHMRR 131 (270)
Q Consensus 113 v~~l~~~~-t~~~l~~~f~~ 131 (270)
|-|||+.+ ||.+|.+++.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 55788887 89999999875
No 446
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.52 E-value=1.3e+02 Score=21.08 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=35.0
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCC--eeEEEeecCCCCCceEEEEecCHHHHHHHHH
Q 024221 10 YVGNLPGDIREREVEDLFYKYGP--IAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (270)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~G~--v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+--+...++..+|++.++.+-. |..|.........--|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 34457788999999988885533 4444443333334579999987766665433
No 447
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=22.26 E-value=1e+02 Score=19.37 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCHHHHHHHHhhcCCeeEEEe--ecCCCCCceEEEEecCHHHHHHHHHh-cCCcccCCceEEEEEc
Q 024221 18 IREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELA 80 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~i~v~~~ 80 (270)
.....+.+++..||.+.-.++ +......+.-.|...-..+...|+.. |+ .+.|-.++.-+.
T Consensus 19 ~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg--~i~GV~vKt~~~ 82 (86)
T 2nzc_A 19 KAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLG--QISGVRVKTVPL 82 (86)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHH--TSTTEEEEEEEC
T ss_pred hhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhC--CCCCEEEEEEEe
Confidence 344579999999999988888 44444556666777777777777653 32 345555554443
No 448
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=22.17 E-value=73 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.8
Q ss_pred eeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCc
Q 024221 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
|.++.. ....+||.|||=.++.++..|+..+.+.
T Consensus 139 I~Si~~--~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQ--RDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEEC--CTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEe--cCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 444443 2357899999999999999999988775
No 449
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.01 E-value=1.3e+02 Score=21.21 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=36.1
Q ss_pred EEcCCCCCCCHHHHHHHHhhc-C-CeeEEEeecCCCCCceEEEEecCHHHHHHHHHh
Q 024221 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (270)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
|+-.+...+|..+|++.++.+ | .|..|.........--|||++....+|......
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 444678899999999988854 3 445554433222345799999887666655443
No 450
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.83 E-value=1.7e+02 Score=18.93 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024221 13 NLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (270)
Q Consensus 13 nl~~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (270)
.++..+.-++|..-.. .||.-.++... ..-+.|-..++++-.+|++.|+-. -.-+.|+|-+..+.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-----n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-----NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-----SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-----cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 3466778888776554 78887666654 224678999999999999976542 44445566555443
No 451
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.90 E-value=1.1e+02 Score=20.77 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=20.0
Q ss_pred cCCceEEEEEecCCCCEEEEE-ecCHHHHHHHHH
Q 024221 132 AGDVCFSQVFRDGSGTTGIVD-YTNYDDMKHAIK 164 (270)
Q Consensus 132 ~g~i~~~~~~~~~~~~~~fv~-f~~~~~a~~a~~ 164 (270)
+-.|..|.+-.|-.-..+||. |.+.++.+.++.
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~ 76 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEA 76 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHH
Confidence 457788888777665566776 555444333333
No 452
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.85 E-value=1.9e+02 Score=20.79 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.2
Q ss_pred CHHHHHHHHhhcCCeeEEEeecCCCCCceEEEEecCHHHHHHHHHh
Q 024221 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
.-++|..+|+.|-... ..+...+-.|.+.+.|.+.+..
T Consensus 131 ~l~~i~~fF~~YK~le--------~gK~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE--------KGKWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHHHTTTTS--------TTCCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc--------CCCcEEEccCcCHHHHHHHHHH
Confidence 4567888999983321 1345777889999999888764
Done!