Query 024224
Match_columns 270
No_of_seqs 285 out of 2660
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02296 carbonate dehydratase 100.0 4.8E-46 1E-50 324.3 27.8 263 1-263 1-263 (269)
2 COG0663 PaaY Carbonic anhydras 100.0 1.8E-34 3.9E-39 232.4 19.3 167 46-218 5-171 (176)
3 PRK13627 carnitine operon prot 100.0 6.3E-30 1.4E-34 214.0 21.8 165 46-216 4-168 (196)
4 PLN02472 uncharacterized prote 100.0 1.7E-29 3.6E-34 217.7 24.0 188 32-219 39-226 (246)
5 TIGR02287 PaaY phenylacetic ac 100.0 6.6E-29 1.4E-33 207.2 20.9 165 46-216 2-166 (192)
6 cd04745 LbH_paaY_like paaY-lik 100.0 1.5E-26 3.3E-31 187.3 19.8 154 53-212 1-154 (155)
7 PRK12461 UDP-N-acetylglucosami 99.9 2E-26 4.3E-31 200.5 19.4 201 47-251 24-248 (255)
8 cd04650 LbH_FBP Ferripyochelin 99.9 2.6E-25 5.6E-30 179.9 19.8 153 53-211 1-153 (154)
9 PRK05289 UDP-N-acetylglucosami 99.9 1E-25 2.2E-30 197.3 18.4 200 48-251 28-252 (262)
10 COG1043 LpxA Acyl-[acyl carrie 99.9 4.2E-26 9.2E-31 190.3 12.5 199 46-252 9-254 (260)
11 cd04645 LbH_gamma_CA_like Gamm 99.9 3.9E-24 8.4E-29 172.8 18.3 151 55-211 2-152 (153)
12 cd04646 LbH_Dynactin_6 Dynacti 99.9 5.7E-24 1.2E-28 173.7 17.8 136 54-189 1-136 (164)
13 TIGR01852 lipid_A_lpxA acyl-[a 99.9 1.4E-23 3.1E-28 183.1 20.4 141 47-189 23-188 (254)
14 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 1.4E-23 3E-28 183.2 18.6 192 47-251 24-249 (254)
15 PRK09527 lacA galactoside O-ac 99.9 5.9E-23 1.3E-27 172.4 18.2 164 19-199 26-192 (203)
16 cd03359 LbH_Dynactin_5 Dynacti 99.9 1.4E-22 3E-27 165.1 18.3 152 55-206 4-159 (161)
17 COG1043 LpxA Acyl-[acyl carrie 99.9 2.4E-23 5.2E-28 173.8 12.3 167 46-212 27-225 (260)
18 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.9 2.1E-22 4.6E-27 172.8 16.2 128 54-196 82-218 (231)
19 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 2.3E-21 5.1E-26 174.3 17.0 53 137-191 254-306 (324)
20 TIGR03308 phn_thr-fam phosphon 99.9 2.9E-21 6.3E-26 162.9 14.7 62 135-198 107-169 (204)
21 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 1.1E-20 2.3E-25 171.7 18.2 99 91-191 203-315 (343)
22 PRK10502 putative acyl transfe 99.9 1.6E-20 3.5E-25 155.8 16.9 132 45-193 46-179 (182)
23 PRK12461 UDP-N-acetylglucosami 99.9 8.1E-21 1.8E-25 165.3 15.4 148 47-198 6-180 (255)
24 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 1E-20 2.2E-25 159.8 15.4 139 49-192 16-204 (205)
25 PRK10092 maltose O-acetyltrans 99.9 1.3E-20 2.8E-25 156.2 15.3 123 57-192 58-183 (183)
26 cd00710 LbH_gamma_CA Gamma car 99.9 7E-20 1.5E-24 150.1 19.4 154 52-213 2-164 (167)
27 cd03357 LbH_MAT_GAT Maltose O- 99.8 2E-20 4.4E-25 153.6 11.8 122 55-189 45-169 (169)
28 PRK09677 putative lipopolysacc 99.8 6.1E-20 1.3E-24 153.7 14.1 145 49-199 40-191 (192)
29 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 1.6E-19 3.5E-24 158.8 15.7 59 47-108 124-182 (338)
30 cd03358 LbH_WxcM_N_like WcxM-l 99.8 2.2E-19 4.7E-24 138.5 13.8 119 55-190 1-119 (119)
31 PRK00892 lpxD UDP-3-O-[3-hydro 99.8 2.2E-18 4.7E-23 156.7 19.9 125 66-194 144-300 (343)
32 TIGR01852 lipid_A_lpxA acyl-[a 99.8 1E-18 2.3E-23 152.4 16.2 184 47-234 5-232 (254)
33 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 2E-18 4.4E-23 144.5 15.7 135 49-185 12-191 (193)
34 cd03350 LbH_THP_succinylT 2,3, 99.8 2E-18 4.3E-23 137.2 14.9 128 48-185 9-138 (139)
35 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.8 2E-18 4.4E-23 150.6 15.8 145 47-195 6-178 (254)
36 cd05825 LbH_wcaF_like wcaF-lik 99.8 2E-18 4.4E-23 131.1 13.6 105 70-189 3-107 (107)
37 cd03349 LbH_XAT Xenobiotic acy 99.8 2.4E-18 5.3E-23 137.5 14.7 126 71-200 2-136 (145)
38 COG0110 WbbJ Acetyltransferase 99.8 1.4E-18 3E-23 144.9 13.4 131 55-196 49-182 (190)
39 PRK11132 cysE serine acetyltra 99.8 2.8E-18 6.2E-23 149.5 13.9 116 62-193 133-248 (273)
40 TIGR03570 NeuD_NnaD sugar O-ac 99.8 4.8E-18 1E-22 142.2 14.7 115 57-186 86-201 (201)
41 TIGR01853 lipid_A_lpxD UDP-3-O 99.8 4.4E-18 9.5E-23 153.1 15.4 146 49-195 100-293 (324)
42 TIGR00965 dapD 2,3,4,5-tetrahy 99.8 4.6E-18 1E-22 146.9 14.8 116 56-185 98-237 (269)
43 cd03360 LbH_AT_putative Putati 99.8 5.2E-18 1.1E-22 140.7 14.6 115 56-185 82-197 (197)
44 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 5.4E-18 1.2E-22 149.3 14.8 156 47-212 142-326 (338)
45 TIGR01173 glmU UDP-N-acetylglu 99.8 9.3E-18 2E-22 157.6 16.1 140 49-190 258-442 (451)
46 PLN02739 serine acetyltransfer 99.8 1.6E-17 3.4E-22 147.6 15.0 82 136-219 257-341 (355)
47 PRK14353 glmU bifunctional N-a 99.8 1.6E-17 3.4E-22 156.0 15.9 139 51-191 267-433 (446)
48 cd03350 LbH_THP_succinylT 2,3, 99.8 2.6E-17 5.5E-22 130.9 13.7 120 59-195 2-130 (139)
49 KOG3121 Dynactin, subunit p25 99.7 1.1E-17 2.4E-22 128.9 10.6 151 58-208 19-173 (184)
50 PLN02694 serine O-acetyltransf 99.7 1.4E-17 2.9E-22 145.4 12.6 107 70-192 160-266 (294)
51 COG1207 GlmU N-acetylglucosami 99.7 7.8E-18 1.7E-22 151.6 11.3 139 46-187 262-446 (460)
52 PRK14357 glmU bifunctional N-a 99.7 2.5E-17 5.4E-22 154.8 14.9 142 48-191 251-436 (448)
53 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 4.1E-17 8.8E-22 142.2 14.6 129 60-196 99-261 (272)
54 COG1045 CysE Serine acetyltran 99.7 5.1E-17 1.1E-21 132.7 13.3 109 55-191 64-172 (194)
55 PRK14352 glmU bifunctional N-a 99.7 5.8E-17 1.3E-21 153.7 15.7 144 48-193 267-455 (482)
56 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.7E-16 3.7E-21 129.4 15.7 121 48-182 13-157 (163)
57 PRK09451 glmU bifunctional N-a 99.7 6.6E-17 1.4E-21 152.3 14.9 137 54-192 267-449 (456)
58 PRK14360 glmU bifunctional N-a 99.7 3.7E-17 8.1E-22 153.6 13.1 135 52-191 280-443 (450)
59 PRK14355 glmU bifunctional N-a 99.7 1.2E-16 2.6E-21 150.7 16.0 135 48-188 264-447 (459)
60 cd03352 LbH_LpxD UDP-3-O-acyl- 99.7 2.7E-16 5.9E-21 132.8 15.3 137 54-194 3-189 (205)
61 PRK05289 UDP-N-acetylglucosami 99.7 1.4E-16 3E-21 139.6 12.9 149 46-198 8-184 (262)
62 cd04647 LbH_MAT_like Maltose O 99.7 3E-16 6.6E-21 118.9 12.6 109 70-189 1-109 (109)
63 PLN02296 carbonate dehydratase 99.7 1.2E-15 2.5E-20 133.5 18.0 159 2-172 9-191 (269)
64 TIGR01172 cysE serine O-acetyl 99.7 2.2E-16 4.8E-21 128.6 12.5 51 135-187 112-162 (162)
65 PRK14359 glmU bifunctional N-a 99.7 3E-16 6.4E-21 146.6 15.0 74 117-192 340-422 (430)
66 KOG4750 Serine O-acetyltransfe 99.7 3.6E-17 7.9E-22 135.2 7.3 56 137-194 201-256 (269)
67 PRK14354 glmU bifunctional N-a 99.7 5.3E-16 1.2E-20 146.1 15.9 140 48-189 261-444 (458)
68 PLN02357 serine acetyltransfer 99.7 2.8E-16 6.1E-21 140.7 12.4 86 92-192 247-332 (360)
69 cd04646 LbH_Dynactin_6 Dynacti 99.7 1.4E-15 3E-20 124.2 14.7 112 50-172 15-137 (164)
70 cd00710 LbH_gamma_CA Gamma car 99.7 2.5E-15 5.3E-20 123.1 15.1 118 50-180 18-140 (167)
71 cd05636 LbH_G1P_TT_C_like Puta 99.7 2.3E-15 5E-20 122.7 14.2 105 51-170 34-163 (163)
72 KOG4042 Dynactin subunit p27/W 99.7 3.1E-16 6.6E-21 121.9 8.0 162 51-212 7-176 (190)
73 PRK10191 putative acyl transfe 99.6 2.4E-15 5.2E-20 120.0 12.0 52 136-189 92-143 (146)
74 cd04649 LbH_THP_succinylT_puta 99.6 2.2E-15 4.8E-20 118.7 11.0 100 59-175 2-110 (147)
75 PRK14356 glmU bifunctional N-a 99.6 3.5E-15 7.6E-20 140.5 14.6 69 119-189 373-449 (456)
76 COG0663 PaaY Carbonic anhydras 99.6 2.8E-15 6E-20 121.2 11.7 101 52-163 29-134 (176)
77 PRK14358 glmU bifunctional N-a 99.6 1.1E-14 2.4E-19 138.0 15.9 132 50-183 268-444 (481)
78 COG2171 DapD Tetrahydrodipicol 99.6 5.8E-15 1.2E-19 126.0 10.9 113 56-183 106-227 (271)
79 cd03359 LbH_Dynactin_5 Dynacti 99.6 3.1E-14 6.6E-19 115.9 14.5 110 52-172 21-144 (161)
80 cd03354 LbH_SAT Serine acetylt 99.6 1.8E-14 3.9E-19 108.1 11.9 99 71-185 3-101 (101)
81 TIGR03536 DapD_gpp 2,3,4,5-tet 99.6 1.3E-14 2.8E-19 126.9 11.4 105 55-175 175-287 (341)
82 TIGR03535 DapD_actino 2,3,4,5- 99.6 3.3E-14 7.1E-19 123.8 12.3 103 55-175 150-262 (319)
83 KOG1461 Translation initiation 99.6 1.5E-14 3.3E-19 135.3 10.8 133 20-172 288-420 (673)
84 PRK14359 glmU bifunctional N-a 99.6 4.3E-14 9.3E-19 132.1 13.7 93 92-196 299-408 (430)
85 PRK14360 glmU bifunctional N-a 99.6 3.7E-14 8E-19 133.3 13.1 137 49-196 259-431 (450)
86 cd04650 LbH_FBP Ferripyochelin 99.6 1.5E-13 3.3E-18 111.0 14.8 112 50-172 16-133 (154)
87 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 1.2E-13 2.6E-18 119.6 13.6 115 53-172 107-234 (269)
88 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 8.2E-14 1.8E-18 119.7 11.2 109 73-195 83-200 (231)
89 cd04745 LbH_paaY_like paaY-lik 99.5 3.7E-13 8E-18 108.9 14.4 110 51-171 17-132 (155)
90 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 3.6E-13 7.8E-18 112.7 14.4 144 51-195 8-184 (193)
91 PRK13627 carnitine operon prot 99.5 2E-13 4.4E-18 114.4 12.5 100 72-182 12-116 (196)
92 cd04645 LbH_gamma_CA_like Gamm 99.5 4.6E-13 1E-17 108.0 14.0 110 52-172 17-132 (153)
93 PRK14353 glmU bifunctional N-a 99.5 6.4E-14 1.4E-18 131.6 9.4 151 54-215 264-440 (446)
94 PLN02472 uncharacterized prote 99.5 4.6E-13 1E-17 115.7 13.6 101 52-163 77-188 (246)
95 TIGR02353 NRPS_term_dom non-ri 99.5 2.2E-13 4.8E-18 133.9 12.2 105 69-191 111-215 (695)
96 PRK14355 glmU bifunctional N-a 99.5 6.1E-13 1.3E-17 125.5 14.7 58 137-195 373-437 (459)
97 TIGR02287 PaaY phenylacetic ac 99.5 7.3E-13 1.6E-17 110.7 12.4 101 71-182 9-114 (192)
98 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 1.4E-12 3.1E-17 113.8 14.5 116 53-172 110-237 (272)
99 TIGR01173 glmU UDP-N-acetylglu 99.5 6.9E-13 1.5E-17 124.6 13.5 142 54-196 257-431 (451)
100 PRK14357 glmU bifunctional N-a 99.5 6.9E-13 1.5E-17 124.7 13.1 138 54-196 251-424 (448)
101 PRK14352 glmU bifunctional N-a 99.4 1.7E-12 3.7E-17 123.3 14.5 63 133-196 371-440 (482)
102 PRK14358 glmU bifunctional N-a 99.4 1.6E-12 3.4E-17 123.4 13.8 141 56-197 268-441 (481)
103 cd03360 LbH_AT_putative Putati 99.4 2.5E-12 5.4E-17 106.5 12.7 61 120-180 115-176 (197)
104 TIGR03308 phn_thr-fam phosphon 99.4 3.3E-12 7.1E-17 107.8 13.0 66 55-136 5-70 (204)
105 TIGR03570 NeuD_NnaD sugar O-ac 99.4 6.3E-12 1.4E-16 105.0 13.2 90 93-193 101-191 (201)
106 TIGR02353 NRPS_term_dom non-ri 99.4 2.7E-12 5.8E-17 126.3 11.3 108 61-186 588-695 (695)
107 PRK14354 glmU bifunctional N-a 99.4 7.9E-12 1.7E-16 117.8 13.9 59 137-196 369-434 (458)
108 cd04649 LbH_THP_succinylT_puta 99.4 5.9E-12 1.3E-16 99.4 10.9 103 48-158 9-111 (147)
109 PRK09451 glmU bifunctional N-a 99.4 7.7E-12 1.7E-16 117.9 13.3 140 55-195 262-434 (456)
110 cd05635 LbH_unknown Uncharacte 99.3 2.8E-11 6.1E-16 90.8 11.9 84 70-169 11-94 (101)
111 cd05787 LbH_eIF2B_epsilon eIF- 99.3 3.3E-11 7.2E-16 85.8 10.3 77 73-164 2-78 (79)
112 PRK05293 glgC glucose-1-phosph 99.3 2.3E-11 5E-16 112.0 11.9 103 55-169 273-379 (380)
113 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 4.5E-11 9.8E-16 85.9 10.9 78 73-166 2-79 (81)
114 PRK14356 glmU bifunctional N-a 99.3 2.9E-11 6.4E-16 113.9 12.3 82 53-149 270-352 (456)
115 cd03356 LbH_G1P_AT_C_like Left 99.3 4.7E-11 1E-15 85.2 10.4 77 73-164 2-78 (79)
116 TIGR01172 cysE serine O-acetyl 99.3 2.6E-11 5.7E-16 98.8 9.9 99 55-164 58-157 (162)
117 cd05635 LbH_unknown Uncharacte 99.3 1.4E-10 3.1E-15 86.9 12.3 82 54-151 13-94 (101)
118 PRK10502 putative acyl transfe 99.2 7.6E-11 1.7E-15 97.8 11.5 55 71-134 52-106 (182)
119 COG2171 DapD Tetrahydrodipicol 99.2 5.5E-11 1.2E-15 101.8 10.4 99 71-176 139-240 (271)
120 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.5E-10 3.3E-15 101.6 13.2 112 44-158 170-288 (341)
121 cd00208 LbetaH Left-handed par 99.2 8.4E-11 1.8E-15 83.1 9.4 77 72-170 2-78 (78)
122 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.6E-10 3.4E-15 83.1 10.7 79 55-149 2-80 (81)
123 cd03358 LbH_WxcM_N_like WcxM-l 99.2 1.5E-10 3.4E-15 88.9 10.9 50 74-136 2-51 (119)
124 cd03357 LbH_MAT_GAT Maltose O- 99.2 1.3E-10 2.9E-15 95.2 11.1 100 50-164 60-162 (169)
125 COG1207 GlmU N-acetylglucosami 99.2 7.5E-11 1.6E-15 106.8 10.2 92 60-165 257-349 (460)
126 PRK11132 cysE serine acetyltra 99.2 1.7E-10 3.7E-15 100.8 11.4 99 54-163 137-236 (273)
127 KOG1461 Translation initiation 99.2 5.9E-11 1.3E-15 111.6 8.4 69 69-151 314-382 (673)
128 cd04647 LbH_MAT_like Maltose O 99.2 3.5E-10 7.7E-15 85.4 11.1 98 53-164 2-102 (109)
129 PRK09677 putative lipopolysacc 99.2 5.7E-10 1.2E-14 93.4 13.1 69 60-136 31-102 (192)
130 COG1045 CysE Serine acetyltran 99.2 2.4E-10 5.3E-15 93.7 10.4 88 51-155 66-156 (194)
131 PRK10191 putative acyl transfe 99.2 2.8E-10 6.1E-15 90.8 10.3 60 92-154 68-128 (146)
132 cd05787 LbH_eIF2B_epsilon eIF- 99.2 3.4E-10 7.3E-15 80.5 9.5 74 94-179 2-75 (79)
133 PRK10092 maltose O-acetyltrans 99.2 3.1E-10 6.8E-15 94.1 10.7 100 50-164 71-173 (183)
134 COG1208 GCD1 Nucleoside-diphos 99.1 4.4E-10 9.5E-15 102.8 12.4 96 65-181 256-351 (358)
135 TIGR03535 DapD_actino 2,3,4,5- 99.1 3.7E-10 8.1E-15 98.7 11.2 65 91-158 199-263 (319)
136 cd05824 LbH_M1P_guanylylT_C Ma 99.1 5.3E-10 1.1E-14 80.1 10.1 60 94-164 20-79 (80)
137 PRK09527 lacA galactoside O-ac 99.1 5.7E-10 1.2E-14 93.9 11.8 102 72-182 57-165 (203)
138 PLN02739 serine acetyltransfer 99.1 2.4E-10 5.2E-15 102.1 9.9 105 92-207 232-339 (355)
139 cd05824 LbH_M1P_guanylylT_C Ma 99.1 9.3E-10 2E-14 78.8 10.7 77 55-146 2-79 (80)
140 PLN02694 serine O-acetyltransf 99.1 3.9E-10 8.5E-15 98.8 10.2 68 92-163 187-255 (294)
141 cd03356 LbH_G1P_AT_C_like Left 99.1 1.2E-09 2.6E-14 77.8 10.7 76 55-146 2-78 (79)
142 KOG1462 Translation initiation 99.1 4.1E-10 8.8E-15 100.6 8.7 88 65-168 329-416 (433)
143 cd04651 LbH_G1P_AT_C Glucose-1 99.1 2.6E-09 5.7E-14 80.5 11.9 76 60-152 3-78 (104)
144 cd04651 LbH_G1P_AT_C Glucose-1 99.1 1.5E-09 3.3E-14 81.8 10.4 79 77-172 2-80 (104)
145 KOG3121 Dynactin, subunit p25 99.1 3.2E-10 6.9E-15 87.9 6.2 103 53-166 34-149 (184)
146 cd00208 LbetaH Left-handed par 99.1 2.4E-09 5.2E-14 75.5 10.1 53 54-106 2-59 (78)
147 TIGR01208 rmlA_long glucose-1- 99.0 2.8E-09 6.1E-14 97.3 12.6 106 61-188 245-351 (353)
148 PLN02241 glucose-1-phosphate a 99.0 2.6E-09 5.7E-14 100.3 12.4 100 64-179 310-434 (436)
149 COG1208 GCD1 Nucleoside-diphos 99.0 2.5E-09 5.4E-14 97.9 11.8 99 50-169 259-357 (358)
150 cd03354 LbH_SAT Serine acetylt 99.0 3.3E-09 7.2E-14 79.4 10.5 45 118-164 53-98 (101)
151 cd05825 LbH_wcaF_like wcaF-lik 99.0 6.1E-09 1.3E-13 78.9 11.0 38 90-135 2-39 (107)
152 cd03349 LbH_XAT Xenobiotic acy 99.0 7.7E-09 1.7E-13 82.6 11.3 104 53-164 2-117 (145)
153 PRK02862 glgC glucose-1-phosph 99.0 5E-09 1.1E-13 98.2 11.7 94 70-179 308-427 (429)
154 TIGR01208 rmlA_long glucose-1- 99.0 6.2E-09 1.3E-13 95.0 11.7 101 53-164 249-352 (353)
155 PLN02357 serine acetyltransfer 98.9 2.1E-08 4.6E-13 90.3 13.3 68 92-163 253-321 (360)
156 PLN02241 glucose-1-phosphate a 98.9 1.1E-08 2.4E-13 96.0 11.5 100 54-169 317-436 (436)
157 PRK05293 glgC glucose-1-phosph 98.8 3.7E-08 8E-13 90.8 12.2 90 65-172 271-360 (380)
158 KOG1460 GDP-mannose pyrophosph 98.8 2.9E-08 6.2E-13 86.3 8.6 69 53-136 289-357 (407)
159 COG0448 GlgC ADP-glucose pyrop 98.8 5.1E-08 1.1E-12 88.3 10.5 96 47-154 268-363 (393)
160 TIGR02091 glgC glucose-1-phosp 98.8 6.7E-08 1.5E-12 88.4 11.4 64 93-169 296-359 (361)
161 COG0110 WbbJ Acetyltransferase 98.7 1.1E-07 2.3E-12 79.1 10.8 97 90-195 66-164 (190)
162 KOG1460 GDP-mannose pyrophosph 98.7 1.4E-07 3E-12 82.1 10.0 72 54-151 284-355 (407)
163 PRK00844 glgC glucose-1-phosph 98.7 1.6E-07 3.5E-12 87.4 10.5 68 70-153 315-382 (407)
164 KOG4750 Serine O-acetyltransfe 98.7 6E-08 1.3E-12 81.0 6.6 104 52-162 134-242 (269)
165 TIGR02091 glgC glucose-1-phosp 98.6 2.2E-07 4.7E-12 85.0 10.5 82 54-152 279-360 (361)
166 TIGR02092 glgD glucose-1-phosp 98.6 1.8E-07 3.9E-12 85.9 9.4 66 92-171 290-355 (369)
167 KOG1462 Translation initiation 98.6 9.8E-08 2.1E-12 85.6 7.2 75 91-178 334-408 (433)
168 PRK02862 glgC glucose-1-phosph 98.6 4.2E-07 9.1E-12 85.3 10.8 30 55-86 311-340 (429)
169 KOG4042 Dynactin subunit p27/W 98.6 1.1E-07 2.3E-12 74.6 5.6 112 49-171 23-148 (190)
170 PRK00725 glgC glucose-1-phosph 98.5 3.7E-07 8.1E-12 85.5 9.7 50 120-170 344-393 (425)
171 KOG1322 GDP-mannose pyrophosph 98.5 1.3E-07 2.8E-12 83.4 5.9 99 60-172 254-352 (371)
172 PRK00844 glgC glucose-1-phosph 98.5 5.2E-07 1.1E-11 84.0 9.7 68 92-172 316-383 (407)
173 PF14602 Hexapep_2: Hexapeptid 98.5 1.4E-07 3.1E-12 56.0 3.7 33 137-171 2-34 (34)
174 TIGR02092 glgD glucose-1-phosp 98.5 1.1E-06 2.4E-11 80.6 10.6 79 57-153 277-355 (369)
175 PRK00725 glgC glucose-1-phosph 98.5 7.9E-07 1.7E-11 83.3 9.5 71 70-156 327-397 (425)
176 PF00132 Hexapep: Bacterial tr 98.2 9E-07 1.9E-11 53.2 2.5 34 137-170 2-35 (36)
177 PF14602 Hexapep_2: Hexapeptid 98.2 2.7E-06 5.8E-11 50.6 3.6 31 120-151 2-32 (34)
178 COG0448 GlgC ADP-glucose pyrop 97.9 3.7E-05 7.9E-10 70.0 8.3 53 119-172 311-363 (393)
179 COG4801 Predicted acyltransfer 97.9 0.00018 3.9E-09 60.7 11.3 116 55-192 6-123 (277)
180 KOG1322 GDP-mannose pyrophosph 97.9 1.9E-05 4.2E-10 69.8 5.6 32 54-85 260-291 (371)
181 PF00132 Hexapep: Bacterial tr 97.7 4.3E-05 9.2E-10 45.7 3.3 32 72-106 3-34 (36)
182 COG4801 Predicted acyltransfer 97.4 0.00086 1.9E-08 56.7 8.3 41 137-177 57-97 (277)
183 PF13720 Acetyltransf_11: Udp 96.7 0.0031 6.7E-08 45.4 4.9 75 175-251 2-76 (83)
184 PF07959 Fucokinase: L-fucokin 90.8 0.61 1.3E-05 43.7 6.2 41 119-160 284-324 (414)
185 PF07959 Fucokinase: L-fucokin 86.0 2.1 4.6E-05 40.1 6.4 41 92-143 285-325 (414)
186 PF04519 Bactofilin: Polymer-f 80.4 9.3 0.0002 28.0 6.8 44 59-107 3-46 (101)
187 PF04519 Bactofilin: Polymer-f 68.0 14 0.0003 27.1 4.9 52 119-172 30-81 (101)
188 PRK13412 fkp bifunctional fuco 65.8 7.9 0.00017 40.2 4.2 12 174-185 380-391 (974)
189 PRK13412 fkp bifunctional fuco 39.4 39 0.00084 35.3 4.2 34 119-152 336-370 (974)
190 PF06394 Pepsin-I3: Pepsin inh 37.4 58 0.0013 22.9 3.6 32 179-212 29-60 (76)
191 PRK15313 autotransport protein 34.8 2.8E+02 0.0061 28.9 9.3 10 91-100 185-194 (955)
192 COG1664 CcmA Integral membrane 29.6 2.2E+02 0.0047 22.6 6.2 25 55-79 20-44 (146)
193 KOG2638 UDP-glucose pyrophosph 26.9 1.1E+02 0.0025 28.7 4.7 22 66-87 449-470 (498)
No 1
>PLN02296 carbonate dehydratase
Probab=100.00 E-value=4.8e-46 Score=324.30 Aligned_cols=263 Identities=94% Similarity=1.404 Sum_probs=251.7
Q ss_pred CchhhhHHHHHhHHHHHHHHHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEc
Q 024224 1 MGTLGRAVYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIW 80 (270)
Q Consensus 1 m~~~~~~i~~~g~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~ 80 (270)
|.++.|+++.+|+|+|+.+++|+++++++.+.+.+.+.+++++.++.+.+..+.|+++++|+|++.+.+++.||++|.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~ 80 (269)
T PLN02296 1 MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIW 80 (269)
T ss_pred CchHHHHHHHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCC
Q 024224 81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERH 160 (270)
Q Consensus 81 ~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~ 160 (270)
++|+|.++.+++.||++|.|+++|+|........+..++++||++|+|++++++++|+||++|+||.+|+|.++++|+++
T Consensus 81 ~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~ 160 (269)
T PLN02296 81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH 160 (269)
T ss_pred CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence 99999998888999999999999999865443334456899999999999999999999999999999999999999999
Q ss_pred cEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChH
Q 024224 161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240 (270)
Q Consensus 161 ~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (270)
|+|++||+|.+++.||+++++.|+||++++++++.+...+....+.|.++++.|..++.+.+++++.++.+++++..+++
T Consensus 161 a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
T PLN02296 161 AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240 (269)
T ss_pred CEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccCCCcccCCCCCC
Q 024224 241 EYDSMLGVVRETPQEIIVPDSIK 263 (270)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~ 263 (270)
+|++..+..++.|||..+|++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~ 263 (269)
T PLN02296 241 EYDSMLGVVRETPPELILPDNIL 263 (269)
T ss_pred ccccccCcccCCCCcccCCCccc
Confidence 99999999999999999999764
No 2
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=232.36 Aligned_cols=167 Identities=49% Similarity=0.840 Sum_probs=157.2
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~ 125 (270)
+.+.+..|.|++.++|+|+|.|.|+++||+++.|+++++|+||.+++.||++|+|++||+|+.... .+++||++
T Consensus 5 ~~~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~------~p~~IG~~ 78 (176)
T COG0663 5 YSYEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG------YPVTIGDD 78 (176)
T ss_pred ccccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC------CCeEECCC
Confidence 344567889999999999999999999999999999999999999999999999999999997443 59999999
Q ss_pred cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT 205 (270)
Q Consensus 126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~ 205 (270)
|+||+++++|+|+||++|+||.||+|++|+.||++|+||+||+|+++..+|+++++.|.|+|+++.+++++.++++...+
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~ 158 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAE 158 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 024224 206 NYSNLAQVHAAEN 218 (270)
Q Consensus 206 ~~~~l~~~~~~~~ 218 (270)
.|.++.+.|....
T Consensus 159 ~Yv~~~~~~~~~~ 171 (176)
T COG0663 159 NYVKLADRYLAGL 171 (176)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998776543
No 3
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.97 E-value=6.3e-30 Score=213.99 Aligned_cols=165 Identities=35% Similarity=0.552 Sum_probs=154.5
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~ 125 (270)
+.+.+..+.++++++|+|++.|.+++.||++|.|+++++|+++.+.++||++|.|+++|+|+... ..++.|+++
T Consensus 4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~------~~~siIg~~ 77 (196)
T PRK13627 4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYC------DTDTIVGEN 77 (196)
T ss_pred cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCC------CCCCEECCC
Confidence 45667788899999999999999999999999999999999988889999999999999997543 247999999
Q ss_pred cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT 205 (270)
Q Consensus 126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~ 205 (270)
+.|++++.+++++||++|+||.+++|.++++||++++|++||+|.+++.+|++++|+|+||++++.+++++..+++...+
T Consensus 78 ~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK13627 78 GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKRLNTK 157 (196)
T ss_pred CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 024224 206 NYSNLAQVHAA 216 (270)
Q Consensus 206 ~~~~l~~~~~~ 216 (270)
.|.++.+.|+.
T Consensus 158 ~y~~~~~~~~~ 168 (196)
T PRK13627 158 EYQDLVGRCHA 168 (196)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 4
>PLN02472 uncharacterized protein
Probab=99.97 E-value=1.7e-29 Score=217.73 Aligned_cols=188 Identities=37% Similarity=0.633 Sum_probs=170.4
Q ss_pred cchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCC
Q 024224 32 NYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKS 111 (270)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~ 111 (270)
...+.....+.+.+..+.+..|.++.+++|.|++.+.+++.||+++.|+++++|+++.+.++||++|.|+++|+|+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~ 118 (246)
T PLN02472 39 PDRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWN 118 (246)
T ss_pred ccccccCcCCcceEEecCCcCCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCc
Confidence 44445566666777888889999999999999999999999999999999999999989999999999999999986543
Q ss_pred CCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224 112 NLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK 191 (270)
Q Consensus 112 ~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~ 191 (270)
...+..++++||++|+|++++.+++|+||++|+||.+++|.+++.||++++|+++++|.++..+|+++++.|+||++++.
T Consensus 119 ~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~ 198 (246)
T PLN02472 119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRT 198 (246)
T ss_pred cccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence 22233458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024224 192 LTDEEIAFISQSATNYSNLAQVHAAENA 219 (270)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (270)
+++.+.+.+....+.|.++.+.|..++.
T Consensus 199 ~~~~~~~~l~~~a~~y~~l~k~~~~~~~ 226 (246)
T PLN02472 199 LTNEETLEIPKLAVAINDLSQSHFSEFL 226 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987654
No 5
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.97 E-value=6.6e-29 Score=207.17 Aligned_cols=165 Identities=36% Similarity=0.592 Sum_probs=154.5
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~ 125 (270)
+.+.+..|.|+++++|+|.+.+.+++.||++|.|+++|+|.++.+++.||++|.|+++|+|+... .+++.||++
T Consensus 2 ~~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~------~~~siIg~~ 75 (192)
T TIGR02287 2 YQIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP------GQDTVVEEN 75 (192)
T ss_pred cCcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC------CCCCeECCC
Confidence 34567889999999999999999999999999999999999988899999999999999996432 358999999
Q ss_pred cEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHH
Q 024224 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSAT 205 (270)
Q Consensus 126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~ 205 (270)
+.|++++.|++|+||++|+||.++++.++++||++++|+++++|.+++.+|++++++|+|||+++.+++++..|+.+...
T Consensus 76 ~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~~~~~~~~ 155 (192)
T TIGR02287 76 GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELAWKKQGTH 155 (192)
T ss_pred CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 024224 206 NYSNLAQVHAA 216 (270)
Q Consensus 206 ~~~~l~~~~~~ 216 (270)
.|.++.+.|++
T Consensus 156 ~y~~~~~~~~~ 166 (192)
T TIGR02287 156 EYQVLATRCKQ 166 (192)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 6
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.95 E-value=1.5e-26 Score=187.29 Aligned_cols=154 Identities=40% Similarity=0.694 Sum_probs=142.7
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
|.++++++|+|.+.+.+++.||++|.|+++|+|.++.+.+.||++|.|+++|+|+.. ..++++||++|+|++++
T Consensus 1 ~~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~------~~~~~~Ig~~~~Ig~~~ 74 (155)
T cd04745 1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGF------PGQDTVLEENGHIGHGA 74 (155)
T ss_pred CccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeec------CCCCeEEcCCCEECCCc
Confidence 357889999999999999999999999999999987778999999999999999642 23579999999999999
Q ss_pred EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224 133 VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212 (270)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~ 212 (270)
.+.++.||++|+||.++.|.++++||++++|+++++|.+++.||+++++.|+|++.++.+++++++|.++...+|..|++
T Consensus 75 ~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
T cd04745 75 ILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA 154 (155)
T ss_pred EEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988899999999999999999999999998888888887764
No 7
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.95 E-value=2e-26 Score=200.47 Aligned_cols=201 Identities=17% Similarity=0.287 Sum_probs=149.4
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCC-----
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSN----- 112 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~----- 112 (270)
..++..+.||+++.|++++.|.+++.||++|.|+++++|.+. ...+.||++|.|+++++|+.+...
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~ 103 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTR 103 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEE
Confidence 344566777777777777777788888888888888887642 236899999999999999865421
Q ss_pred ---------CCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 113 ---------LSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 113 ---------~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
+....|++.||++|+|++++.+.+ ++|||+++||.++.|.++++||++++|+++|+|++| |||++++.
T Consensus 104 IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~ 181 (255)
T PRK12461 104 IGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMA 181 (255)
T ss_pred EcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEe
Confidence 122357788888888888887755 999999999999999999999999999999999999 99999999
Q ss_pred ecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224 183 GNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE 251 (270)
Q Consensus 183 G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (270)
|+||++. .+..--+++..-..+....+.++|+..|...+...++.+++.++.+ ..++..+...|+++
T Consensus 182 G~pa~~~-~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~ 248 (255)
T PRK12461 182 GHPTNVH-GLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQF-ESPEVEELIDFIKA 248 (255)
T ss_pred cCcceEe-ccchhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHc
Confidence 9999952 2222111111112233445557777777888877787777776544 45777778877754
No 8
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.94 E-value=2.6e-25 Score=179.87 Aligned_cols=153 Identities=43% Similarity=0.733 Sum_probs=142.3
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
|.+.++++|+|.+.|.+++.||++|.|+++++|.++..+++||++|.|+++|.|.... ..+++||+++.|++++
T Consensus 1 ~~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~------~~~~~Ig~~~~I~~~~ 74 (154)
T cd04650 1 PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH------GYPTEIGDYVTIGHNA 74 (154)
T ss_pred CccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC------CCCeEECCCCEECCCc
Confidence 3578999999999999999999999999999999876779999999999999998521 1369999999999999
Q ss_pred EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHH
Q 024224 133 VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 211 (270)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~ 211 (270)
.+.++.||++|+|+.++.+.+++.||+++++++++.|.++..+|+++++.|+||++++.++++++++++...+.|.+++
T Consensus 75 ~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (154)
T cd04650 75 VVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELA 153 (154)
T ss_pred EEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998889999999999999999999999999999999888764
No 9
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.94 E-value=1e-25 Score=197.30 Aligned_cols=200 Identities=18% Similarity=0.224 Sum_probs=136.8
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC-----
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL----- 113 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~----- 113 (270)
.++..+.||+++.|++++.|.+++.||++|.|+++++|.++ ...+.||++|.|+++|+|.......
T Consensus 28 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~ 107 (262)
T PRK05289 28 VIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTR 107 (262)
T ss_pred EECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeE
Confidence 34556677777777777777777888888888888887642 1258899999999999887653210
Q ss_pred ----------CCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 114 ----------SGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 114 ----------~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
....|++.||++|.+++++.+.+ ++|||+||||.++.|.++++||++++|+++|+|.+| ||++++++
T Consensus 108 IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~ 185 (262)
T PRK05289 108 IGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAE 185 (262)
T ss_pred ECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEe
Confidence 01124455555555555554443 899999999999999999999999999999999999 99999999
Q ss_pred ecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224 183 GNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE 251 (270)
Q Consensus 183 G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (270)
|+|++++. +...-++...-..+....+.++|+..+.......++++++.++.. ..++..+...|+++
T Consensus 186 G~pa~~~~-~n~~g~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~ 252 (262)
T PRK05289 186 GNPARLRG-LNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYP-DSPEVKEILDFIES 252 (262)
T ss_pred cccCeEec-cchhhhhhCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhcc-CCHHHHHHHHHHhc
Confidence 99999852 211111111111223345556666666666666666666655443 45667777777765
No 10
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.94 E-value=4.2e-26 Score=190.25 Aligned_cols=199 Identities=19% Similarity=0.280 Sum_probs=114.4
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEEC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIG 123 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig 123 (270)
.+++.+.+.|++++.|+|+|.|+++++||+++.|+++++|.|. .+||+++.|.+.+.|...+++ |.+....+.||
T Consensus 9 TAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~---T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG 85 (260)
T COG1043 9 TAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGH---TTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG 85 (260)
T ss_pred ceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCC---eEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence 4556677777788888888888877888777777777777643 344444444444444444443 33333334444
Q ss_pred CCcEECcCcEE--------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCc---
Q 024224 124 DNVTVGHSAVL--------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTR--- 174 (270)
Q Consensus 124 ~~v~I~~~~~i--------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~--- 174 (270)
+++.|++++++ |+|+||++|.+.+|+++.++|.|||+++||+.+-|++.++
T Consensus 86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~ 165 (260)
T COG1043 86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGA 165 (260)
T ss_pred CCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcc
Confidence 44444444433 3455555555555555555555555554444444444333
Q ss_pred -------------cCCCcEEeecCceeccCCCHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccC
Q 024224 175 -------------IPSGEVWGGNPAKFLRKLTDEEIAFISQ---SATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARR 238 (270)
Q Consensus 175 -------------I~~~~iv~G~pa~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (270)
||||.++.|+|++.-. ++-.- +++ ..+++..+.++|+..|.....-.|+..++.+..+ .
T Consensus 166 ~amiGg~S~v~~DVpPy~~~~Gn~a~l~G-lN~vG---lkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~-~ 240 (260)
T COG1043 166 HAMIGGLSAVSQDVPPYVIASGNHARLRG-LNIVG---LKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYA-D 240 (260)
T ss_pred hheeccccccccCCCCeEEecCCcccccc-cceee---eeccCCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhc-C
Confidence 6666666666665431 00000 111 1345556667888888888777777777766655 4
Q ss_pred hHHHhhhccccccC
Q 024224 239 DEEYDSMLGVVRET 252 (270)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (270)
.++......|+...
T Consensus 241 ~~~v~~~~dFi~~s 254 (260)
T COG1043 241 NPEVKEFIDFIASS 254 (260)
T ss_pred ChHHHHHHHHHhhc
Confidence 57777777776543
No 11
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.93 E-value=3.9e-24 Score=172.80 Aligned_cols=151 Identities=58% Similarity=0.981 Sum_probs=141.5
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
++++++|+|.+.|.+++.||++|.|++++.|.++.++++||++|.|+++++|..... ++++||+++.|+.++.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------~~~~Ig~~~~I~~~~~i 75 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG------YPTIIGDNVTVGHGAVL 75 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC------CCeEEcCCcEECCCcEE
Confidence 688999999999999999999999999999998878999999999999999986432 46899999999999999
Q ss_pred eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHH
Q 024224 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 211 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~ 211 (270)
.++.||++++|++++.+.++++|+++|+|++++.|.+++.+|+++++.|.|++++++++..+...+++....|.+|+
T Consensus 76 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
T cd04645 76 HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELA 152 (153)
T ss_pred eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888764
No 12
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.92 E-value=5.7e-24 Score=173.70 Aligned_cols=136 Identities=16% Similarity=0.240 Sum_probs=124.2
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
+|+++++|+|.+.|.+++.||++|.|++++.|.++.++++||++|.|+++|+|......+.+...++.||+++.+..++.
T Consensus 1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~ 80 (164)
T cd04646 1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCK 80 (164)
T ss_pred CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcE
Confidence 37899999999999999999999999999999876678999999999999999875543334456789999999999999
Q ss_pred EeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 134 LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 134 i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
+.+++||++||||++|+|.++++||++|+||++++|.+++.+|+++++.|+|+...
T Consensus 81 i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~ 136 (164)
T cd04646 81 CEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR 136 (164)
T ss_pred EEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEE
Confidence 99999999999999999999999999999999999999999999999999988644
No 13
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.92 E-value=1.4e-23 Score=183.09 Aligned_cols=141 Identities=21% Similarity=0.313 Sum_probs=114.9
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC----
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL---- 113 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~---- 113 (270)
..+...+.|++++.|+|++.|.+++.||++|.|+++++|.+. ..+++||++|.|+++|+|.......
T Consensus 23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~ 102 (254)
T TIGR01852 23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT 102 (254)
T ss_pred CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence 345667788888899999999999999999999999999732 2368999999999999998653211
Q ss_pred -----------CCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224 114 -----------SGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW 181 (270)
Q Consensus 114 -----------~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv 181 (270)
....++++||++|.|++++.+. +++||++|+||+++.|.++++||++++|+++++|+++ ||+++++
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~ 180 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLV 180 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEE
Confidence 0012556666666666666554 4899999999999999999999999999999999998 9999999
Q ss_pred eecCceec
Q 024224 182 GGNPAKFL 189 (270)
Q Consensus 182 ~G~pa~~i 189 (270)
+|+|++..
T Consensus 181 ~G~pa~~~ 188 (254)
T TIGR01852 181 EGNRARLR 188 (254)
T ss_pred ecCcCeec
Confidence 99999983
No 14
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.92 E-value=1.4e-23 Score=183.17 Aligned_cols=192 Identities=19% Similarity=0.263 Sum_probs=129.1
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC---------CCceEECCCCEECCCCEEEcCCCCC----
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISVGSGTNIQDNSLVHVAKSNL---- 113 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~v~IG~~~~I~~~~~I~~~~~~~---- 113 (270)
..+...+.|++++.|+|++.|.+++.||++|.|+++++|.+. ...++||++|.|+++|+|.......
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~ 103 (254)
T cd03351 24 CVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVT 103 (254)
T ss_pred cEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCce
Confidence 344566777888888888888888888888888888888632 2368899999999999987643211
Q ss_pred -----------CCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224 114 -----------SGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW 181 (270)
Q Consensus 114 -----------~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv 181 (270)
....+++.||++|.|+.++.+ ++++||++|+||+++.|.++++||++++|+++|+|.++ ||+++++
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~ 181 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIA 181 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEE
Confidence 001133444444444444433 34899999999999999999999999999999999998 8999999
Q ss_pred eecCceecc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224 182 GGNPAKFLR---------KLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE 251 (270)
Q Consensus 182 ~G~pa~~i~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (270)
+|+|+++.. .++++... ++.+.|+..+.......++..++.++.. ..++..+...|+++
T Consensus 182 ~G~~~~~~~~~~~g~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~ 249 (254)
T cd03351 182 AGNRARLRGLNLVGLKRRGFSREEIR----------ALKRAYRILYRSGLTLEEALEELEEEAP-DSPEVEELVDFIRS 249 (254)
T ss_pred EccCCeEeccceeceeecCCCHHHHH----------HHHHHHHHHHhcCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHh
Confidence 999997542 33333333 3333343333333333444444444322 35666666777764
No 15
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.91 E-value=5.9e-23 Score=172.38 Aligned_cols=164 Identities=18% Similarity=0.334 Sum_probs=123.1
Q ss_pred HHHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECC
Q 024224 19 GQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGS 96 (270)
Q Consensus 19 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~ 96 (270)
......++.+++...... .-.+...+..+++ .+|++++|.|.+.+. .++.||++++|+.+|+|. +.+.++||+
T Consensus 26 ~~~~~~~~~~~n~~~~~~-~~~~~~ll~~~~~---~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~-d~~~I~IGd 100 (203)
T PRK09527 26 RLRGKTLMYEFNHSHPSE-VEKRESLIKEMFA---TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGD 100 (203)
T ss_pred HHHHHHHHHHHcCCCCCC-HHHHHHHHHHhhh---hcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe-cCCCEEECC
Confidence 344445555655432221 1112233444444 489999999998874 689999999999999998 446899999
Q ss_pred CCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc-EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224 97 GTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA-VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175 (270)
Q Consensus 97 ~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~-~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I 175 (270)
+|.|+++|+|.+..|+.... . -..+. ..++++||++||||++++|.++++||++|+|++||+|.++ +
T Consensus 101 ~v~Ig~~v~I~~~~h~~~~~-----~-----r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--v 168 (203)
T PRK09527 101 NVLIAPNVTLSVTGHPVHHE-----L-----RKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--I 168 (203)
T ss_pred CCEECCCCEEEeCCCCCChh-----h-----ccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--C
Confidence 99999999998755432100 0 00111 2356999999999999999999999999999999999998 9
Q ss_pred CCCcEEeecCceeccCCCHHHHHH
Q 024224 176 PSGEVWGGNPAKFLRKLTDEEIAF 199 (270)
Q Consensus 176 ~~~~iv~G~pa~~i~~~~~~~~~~ 199 (270)
|++++++|+||++++.+.+.+..+
T Consensus 169 p~~~v~~G~PAk~i~~~~~~~~~~ 192 (203)
T PRK09527 169 PPNVVAAGVPCRVIREINDRDKQY 192 (203)
T ss_pred CCCcEEEeeCCEEeccCCHHHHHH
Confidence 999999999999999997665444
No 16
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.90 E-value=1.4e-22 Score=165.10 Aligned_cols=152 Identities=19% Similarity=0.376 Sum_probs=134.1
Q ss_pred eCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCC--CccCeEECCCcEECc
Q 024224 55 VDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSG--KVLPTTIGDNVTVGH 130 (270)
Q Consensus 55 i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~--~~~~~~Ig~~v~I~~ 130 (270)
...+..|++.+.|.+ ++.||+++.|++++.|.++.++++||++|.|+++|+|.+..+...+ ...+++||++++|++
T Consensus 4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~ 83 (161)
T cd03359 4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGE 83 (161)
T ss_pred CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECC
Confidence 445678888888865 7999999999999999988778999999999999999975433222 224789999999999
Q ss_pred CcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHH
Q 024224 131 SAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATN 206 (270)
Q Consensus 131 ~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~ 206 (270)
++.+..+.||++++||.++.|.+++.|+++++|+++++|.+++.+|++++++|+||++++++++.+.+++....++
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~~ 159 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETKE 159 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877654443
No 17
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.90 E-value=2.4e-23 Score=173.83 Aligned_cols=167 Identities=18% Similarity=0.215 Sum_probs=135.2
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCC----
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSN---- 112 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~---- 112 (270)
+.++++.+.|++++.|++.++|.+.++||+++.|.+.+.|..++ ..+.||++|.|.++++|+.++..
T Consensus 27 f~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g~ 106 (260)
T COG1043 27 FCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGV 106 (260)
T ss_pred eEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCcee
Confidence 56778889999999999999999999999999999999997443 57999999999999999987643
Q ss_pred -----------CCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecC----CCccC
Q 024224 113 -----------LSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ----NTRIP 176 (270)
Q Consensus 113 -----------~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~----~~~I~ 176 (270)
+....|+|.||++|.+..+++|.+ +.|||++.||..+-|-+-|+||++|+||+.|.|.+ .+.+.
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~ 186 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIAS 186 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeEEec
Confidence 234589999999999999999988 99999999999999999999999999999988744 22111
Q ss_pred -CCcEEeec--CceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224 177 -SGEVWGGN--PAKFLRKLTDEEIAFISQSATNYSNLAQ 212 (270)
Q Consensus 177 -~~~iv~G~--pa~~i~~~~~~~~~~~~~~~~~~~~l~~ 212 (270)
..+...|. -.-..+.++.+++..+++..+.+++-..
T Consensus 187 Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~ 225 (260)
T COG1043 187 GNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGL 225 (260)
T ss_pred CCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCC
Confidence 12222231 1223467899999999988887665544
No 18
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.89 E-value=2.1e-22 Score=172.80 Aligned_cols=128 Identities=32% Similarity=0.555 Sum_probs=118.7
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
.++.++.|+|++.+.+++.||+++.|++++.|.+ ++.||++|.|+++++|.. .+.||++|+|+.++.
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~I~~----------~s~Ig~~~~Ig~~~~ 148 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINI---GAEIGEGTMIDMNAVLGG----------RATVGKNVHIGAGAV 148 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCC---CeEECCCCEEccccccCC----------CcEECCCcEEcCCcE
Confidence 3578899999999999999999999999999984 579999999999999853 789999999999999
Q ss_pred Ee---------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224 134 LH---------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 134 i~---------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
+. ++.||++|+||++++|.++++||++++|+++++|.++ +|++++++|+||++++.+++..
T Consensus 149 I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~~~~ 218 (231)
T TIGR03532 149 LAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVDEKT 218 (231)
T ss_pred EccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCChhH
Confidence 96 4899999999999999999999999999999999998 9999999999999999998754
No 19
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.87 E-value=2.3e-21 Score=174.29 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=49.8
Q ss_pred eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224 137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK 191 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~ 191 (270)
++||++||||.++.|.++++||++++|+++|+|++| +|+++++.|+||+..++
T Consensus 254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~~ 306 (324)
T TIGR01853 254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPPGVYGGIPARPNKE 306 (324)
T ss_pred cEECCCeEEccccccccCCEECCCCEEccCCEeCCc--CCCCcEEEccCccHHHH
Confidence 789999999999999999999999999999999999 99999999999997663
No 20
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.87 E-value=2.9e-21 Score=162.90 Aligned_cols=62 Identities=29% Similarity=0.574 Sum_probs=55.7
Q ss_pred eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC-CCHHHHH
Q 024224 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK-LTDEEIA 198 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~-~~~~~~~ 198 (270)
.++.||++|+||.+++|.++++||++++|+++++|.++ ||++++++|+||++++. ++++..+
T Consensus 107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~Pa~~~~~~~~~~~~~ 169 (204)
T TIGR03308 107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVPAKLIRRRFPPEIAA 169 (204)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecCchHhhhcCCHHHHH
Confidence 46899999999999999999999999999999999998 99999999999999875 4444433
No 21
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.86 E-value=1.1e-20 Score=171.73 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=67.0
Q ss_pred ceEECCCCEECCCCEEEcCCCCCCC------------CccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEE
Q 024224 91 SISVGSGTNIQDNSLVHVAKSNLSG------------KVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVV 157 (270)
Q Consensus 91 ~v~IG~~~~I~~~~~I~~~~~~~~~------------~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~I 157 (270)
.+.||+++.||.+++|..+.....- ..|++.||++|.|+.++.+. +++||++|+||.++.|.++++|
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~i 282 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEI 282 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEE
Confidence 3555556666555555432211110 12333333333333333333 3889999999999999999999
Q ss_pred CCCcEECCCCeecCCCccCC-CcEEeecCceeccC
Q 024224 158 ERHGMVAAGSLVRQNTRIPS-GEVWGGNPAKFLRK 191 (270)
Q Consensus 158 g~~~vIgagsvV~~~~~I~~-~~iv~G~pa~~i~~ 191 (270)
|++++|++++.|.++ +|+ +.++.|+||+.+++
T Consensus 283 g~~~~i~~~s~v~~~--i~~~~~~~~G~pa~~~~~ 315 (343)
T PRK00892 283 GDGVTITAMSGVTKS--IPEPGEYSSGIPAQPNKE 315 (343)
T ss_pred CCCCEEecCCeeCCc--cCCCCeEEEeecCchHHH
Confidence 999999999999998 999 88889999987654
No 22
>PRK10502 putative acyl transferase; Provisional
Probab=99.86 E-value=1.6e-20 Score=155.83 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=109.5
Q ss_pred hhhccCCCceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEE
Q 024224 45 LMNIFDKAPAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTI 122 (270)
Q Consensus 45 ~~~~~~~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~I 122 (270)
++.+++ ..||+++.|++++.|.. ++.||++|.|++++.|. +...++||++|.|+++++|....|++....
T Consensus 46 ~lr~~g--a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~----- 117 (182)
T PRK10502 46 LLRLFG--AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSDPH----- 117 (182)
T ss_pred HHHHhc--cccCCCcEEcCCEEEecCCeEEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcCCC-----
Confidence 344443 46899999999998875 69999999999999998 346799999999999999987665432111
Q ss_pred CCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224 123 GDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT 193 (270)
Q Consensus 123 g~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~ 193 (270)
......+++||++||||++|+|.+|++||++|+|+++++|.++ +|++++++|+||++++++.
T Consensus 118 -------~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~Pa~~ik~r~ 179 (182)
T PRK10502 118 -------FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNPAVPIRPRV 179 (182)
T ss_pred -------cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCcceEecccc
Confidence 0112356899999999999999999999999999999999998 9999999999999998753
No 23
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.86 E-value=8.1e-21 Score=165.30 Aligned_cols=148 Identities=20% Similarity=0.343 Sum_probs=125.1
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEECC
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIGD 124 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig~ 124 (270)
+.+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+ ++.||++|.|+++++|...+++ +.+....+.||+
T Consensus 6 a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 6 AVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILG---PTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeC---CCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 46678889999999999999999999999999999999994 5799999999999999876654 334445677888
Q ss_pred CcEECcCcEE-------------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCc
Q 024224 125 NVTVGHSAVL-------------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGE 179 (270)
Q Consensus 125 ~v~I~~~~~i-------------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~ 179 (270)
++.|+++++| ++|.||++|+|++++.+..+++||++|+|++++.|.++++|++++
T Consensus 83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence 7777777766 346778888888888888899999999999999999999999999
Q ss_pred EEeecCceeccCCCHHHHH
Q 024224 180 VWGGNPAKFLRKLTDEEIA 198 (270)
Q Consensus 180 iv~G~pa~~i~~~~~~~~~ 198 (270)
++.+ -+.+.++++++.+.
T Consensus 163 ~Vg~-gs~V~~dVpp~~i~ 180 (255)
T PRK12461 163 MMAG-GSRISKDVPPYCMM 180 (255)
T ss_pred EECC-CceEeccCCCCeEE
Confidence 9987 48888888887653
No 24
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.86 E-value=1e-20 Score=159.85 Aligned_cols=139 Identities=17% Similarity=0.262 Sum_probs=94.2
Q ss_pred cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----------------
Q 024224 49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN---------------- 112 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~---------------- 112 (270)
++..+.|+++++|+|++.|.++++||++|.|++++.|.. .++||++|.|+++++|.....+
T Consensus 16 i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (205)
T cd03352 16 IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYE---GCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGG 92 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC---CCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcce
Confidence 445556666666666666666666666666666666653 2456666666665555321100
Q ss_pred ---------------------CC------------CCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEEC
Q 024224 113 ---------------------LS------------GKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVE 158 (270)
Q Consensus 113 ---------------------~~------------~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig 158 (270)
.. ...+.+.||+++.|+.++.+ +++.||++|+||+++.|.++++||
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig 172 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIG 172 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEEC
Confidence 00 01123334444444444433 458999999999999999999999
Q ss_pred CCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224 159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192 (270)
Q Consensus 159 ~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~ 192 (270)
++++|+++++|.++ +|++.++.|+||++++++
T Consensus 173 ~~~~i~~~s~v~~~--~~~~~~~~G~pa~~~~~~ 204 (205)
T cd03352 173 DGVVIGAGSGVTSI--VPPGEYVSGTPAQPHREW 204 (205)
T ss_pred CCCEEcCCCEEeeE--CCCCCEEEeecCchhhhc
Confidence 99999999999998 999999999999987654
No 25
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.86 E-value=1.3e-20 Score=156.25 Aligned_cols=123 Identities=25% Similarity=0.449 Sum_probs=103.1
Q ss_pred CCCEECCCcE--EecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 57 KDAFVAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 57 ~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
.+++|.|.+. ++.++.||++++|+.+|+|. +.+.++||++|.|+++|+|.+..|+.+.. ....+..+
T Consensus 58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~----------~~~~~~~~ 126 (183)
T PRK10092 58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPV----------ARNSGAEL 126 (183)
T ss_pred CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChH----------Hcccccee
Confidence 3678888774 46789999999999999997 66789999999999999999876643221 11122222
Q ss_pred -eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224 135 -HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192 (270)
Q Consensus 135 -~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~ 192 (270)
+++.||++||||++|+|.++++||++|+|+++++|.++ ||++++++|+||++++.+
T Consensus 127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~PAr~i~~~ 183 (183)
T PRK10092 127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 183 (183)
T ss_pred cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecCcEEeecC
Confidence 45899999999999999999999999999999999998 999999999999998753
No 26
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.86 E-value=7e-20 Score=150.06 Aligned_cols=154 Identities=29% Similarity=0.505 Sum_probs=121.8
Q ss_pred CceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224 52 APAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~ 130 (270)
.+.|+++++|+|++.|.+++.||++|+|++++.|.++. .++.||++|.|+++++|.... .+.+.||+++.|++
T Consensus 2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~------~~~v~Ig~~~~I~~ 75 (167)
T cd00710 2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE------GYSVWIGKNVSIAH 75 (167)
T ss_pred CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC------CCCEEECCCceECC
Confidence 57899999999999999999999999999999998653 369999999999999997532 24799999999999
Q ss_pred CcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe-------ecCceeccCCCHHHHHHHHH
Q 024224 131 SAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG-------GNPAKFLRKLTDEEIAFISQ 202 (270)
Q Consensus 131 ~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~-------G~pa~~i~~~~~~~~~~~~~ 202 (270)
++.+.+ +.||++|+||.+|.|. +++||++|+|++++.|. +..|++++++. +.|.+.+.++.+...+..+.
T Consensus 76 ~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 153 (167)
T cd00710 76 GAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADALPDVTDSAREFNEK 153 (167)
T ss_pred CCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcccccccCChhHHHHHHH
Confidence 999987 9999999999999996 69999999999999996 34567666653 23333334444444444444
Q ss_pred HHHHHHHHHHH
Q 024224 203 SATNYSNLAQV 213 (270)
Q Consensus 203 ~~~~~~~l~~~ 213 (270)
....|.++.+.
T Consensus 154 i~~~~~~~~~~ 164 (167)
T cd00710 154 VITVNNELAEG 164 (167)
T ss_pred Hhhhhhhhhhh
Confidence 44455555543
No 27
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.84 E-value=2e-20 Score=153.55 Aligned_cols=122 Identities=24% Similarity=0.465 Sum_probs=101.7
Q ss_pred eCCCCEECCCcEE--ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 55 VDKDAFVAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 55 i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
++++++|.+.+.+ ..++.||++++|+++++|. +.+.++||++|.|+++|+|.+..|..... +.. .+.
T Consensus 45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~-------~~~---~~~ 113 (169)
T cd03357 45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDPE-------ERN---RGL 113 (169)
T ss_pred cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCChh-------Hcc---ccc
Confidence 6788888888665 4579999999999999987 44689999999999999999766532211 110 122
Q ss_pred -EEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 133 -VLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 133 -~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
..+++.||++||||++|+|.++++||++|+||++|+|.++ ||++++++|+|||++
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~PAkvi 169 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGNPARVI 169 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEccccEEC
Confidence 2356999999999999999999999999999999999998 999999999999975
No 28
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.84 E-value=6.1e-20 Score=153.66 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=109.8
Q ss_pred cCCCceeCCCCEECCCcEE----ecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224 49 FDKAPAVDKDAFVAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD 124 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~ 124 (270)
.+....+|+++++.+++.+ .+.+.||+++.|++++.|.. ..+++||++|.|++++.|.+..|..... .. .-.
T Consensus 40 ~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~~--~~-~~~ 115 (192)
T PRK09677 40 NDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFKH--SD-DFS 115 (192)
T ss_pred CCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCccccc--cc-ccc
Confidence 4566678888888888877 34688999999999988873 3578899999999999888654421100 00 000
Q ss_pred CcEEC---cCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHH
Q 024224 125 NVTVG---HSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAF 199 (270)
Q Consensus 125 ~v~I~---~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~ 199 (270)
+..+. ......+++||++|+||++++|.++++||++|+|+++|+|.++ +|++++++|+||++++.+.++...|
T Consensus 116 ~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~~~~w 191 (192)
T PRK09677 116 SPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHETKLW 191 (192)
T ss_pred ccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcccccc
Confidence 01111 1123456899999999999999999999999999999999998 9999999999999999988765443
No 29
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.83 E-value=1.6e-19 Score=158.81 Aligned_cols=59 Identities=14% Similarity=0.340 Sum_probs=34.9
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEc
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV 108 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~ 108 (270)
..++.++.||+++.|+++++|++++.||++|+|+++++|. .++.||++|.|++++.|..
T Consensus 124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~---~~~~IG~~v~I~~GavIG~ 182 (338)
T COG1044 124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIY---HNVVIGNNVIIHSGAVIGA 182 (338)
T ss_pred eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEe---cCcEECCceEECCCCEEcc
Confidence 3445555666666666666666666666666666666665 2345666666666666554
No 30
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.82 E-value=2.2e-19 Score=138.54 Aligned_cols=119 Identities=23% Similarity=0.366 Sum_probs=101.9
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+++++.|++.+.|.+++.||++|.|++++.|. .++.||++|.|++++.+..... ....+..++.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~---~~~~Ig~~~~I~~~~~i~~~~~------------~~~~~~~~~~~ 65 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIY---EGVTIEDDVFIGPNVVFTNDLY------------PRSKIYRKWEL 65 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEe---CCeEECCCcEEcCCeEEecCCC------------Ccccccccccc
Confidence 46788888888888899999999999999996 3579999999999999974221 22333346678
Q ss_pred eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceecc
Q 024224 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 190 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~ 190 (270)
.++.||++|+||+++.+.+++.|++++.|+++++|.++ +|+++++.|+|||+++
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~--i~~~~~~~G~pa~~~~ 119 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD--VPPYALVVGNPARIIG 119 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc--CCCCeEEecCcceecC
Confidence 88999999999999999999999999999999999998 9999999999999764
No 31
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.81 E-value=2.2e-18 Score=156.65 Aligned_cols=125 Identities=12% Similarity=0.244 Sum_probs=81.2
Q ss_pred EEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCC---------ccCeEECCCcEECcCcEE--
Q 024224 66 SIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK---------VLPTTIGDNVTVGHSAVL-- 134 (270)
Q Consensus 66 ~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---------~~~~~Ig~~v~I~~~~~i-- 134 (270)
.|++++.||++|.|+++++|. ..+.||++|.|+++++|......+... .+.+.||++|.||++++|
T Consensus 144 ~I~~~~~IG~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~ 220 (343)
T PRK00892 144 VIGDGVKIGADCRLHANVTIY---HAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDR 220 (343)
T ss_pred EEcCCcEECCCCEeCCCeEEc---CCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEec
Confidence 333333344444444444443 235677777777777775432222111 135777777777777765
Q ss_pred ---------------------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224 135 ---------------------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT 193 (270)
Q Consensus 135 ---------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~ 193 (270)
++|+||++|+|++++.|..+++||++|+|++++.|.++++|++++++++. +.+.++++
T Consensus 221 ~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~-s~v~~~i~ 299 (343)
T PRK00892 221 GALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAM-SGVTKSIP 299 (343)
T ss_pred CccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecC-CeeCCccC
Confidence 34677777777777777888999999999999999999999999999875 55555555
Q ss_pred H
Q 024224 194 D 194 (270)
Q Consensus 194 ~ 194 (270)
+
T Consensus 300 ~ 300 (343)
T PRK00892 300 E 300 (343)
T ss_pred C
Confidence 5
No 32
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.81 E-value=1e-18 Score=152.45 Aligned_cols=184 Identities=17% Similarity=0.230 Sum_probs=131.4
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCc-------
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKV------- 117 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~------- 117 (270)
.++.+.+.|++++.|+|++.|.+++.||+++.|+++|.|.+ +++||++|.|+++++|....++ +.+..
T Consensus 5 a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~---~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 5 AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILG---HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred CEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEee---eEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 35577889999999999999999999999999999999984 5899999999999999743221 00000
Q ss_pred ------------------cCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC
Q 024224 118 ------------------LPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG 178 (270)
Q Consensus 118 ------------------~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~ 178 (270)
+.++||+++.|+.++.+ ++|.||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus 82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~ 161 (254)
T TIGR01852 82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY 161 (254)
T ss_pred CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence 34566666666666666 56888999999999999999999999999999999999999999
Q ss_pred cEEeecCceeccCCCHHHHHH-----H--------H---HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 024224 179 EVWGGNPAKFLRKLTDEEIAF-----I--------S---QSATNYSNLAQVHAAENAKSFDEIEFEKVLRKK 234 (270)
Q Consensus 179 ~iv~G~pa~~i~~~~~~~~~~-----~--------~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (270)
+++++ .+.+.+++++....+ . . -..+...++...|+..+....+.-+...++.+.
T Consensus 162 ~~Ig~-~s~V~~~i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (254)
T TIGR01852 162 AMIGG-LSAVSKDVPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSGLPLREAAQQVAEE 232 (254)
T ss_pred CEEee-eeeEeeecCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98876 344555555332211 0 0 012334456666666666555444444444433
No 33
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.80 E-value=2e-18 Score=144.53 Aligned_cols=135 Identities=19% Similarity=0.369 Sum_probs=88.8
Q ss_pred cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCCC---
Q 024224 49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKSN--- 112 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~~--- 112 (270)
+...+.|+++++|+|++.|.+++.||++|.|++++.|.... .++.||+++.|++++.|.....-
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~ 91 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG 91 (193)
T ss_pred EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence 34556677777777777777777777777777777665220 01223333333333322210000
Q ss_pred ---------------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224 113 ---------------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 113 ---------------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
....-.++.||++|.|++++.+. +++||+++|||.++++.++++||++++|
T Consensus 92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i 171 (193)
T cd03353 92 VHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATI 171 (193)
T ss_pred CEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEE
Confidence 00001245666666666666552 4789999999999999999999999999
Q ss_pred CCCCeecCCCccCCCcEEeecC
Q 024224 164 AAGSLVRQNTRIPSGEVWGGNP 185 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv~G~p 185 (270)
+++++|+++ +|+++++.|.|
T Consensus 172 ~~gs~V~~~--v~~~~~v~~~~ 191 (193)
T cd03353 172 AAGSTITKD--VPPGALAIARA 191 (193)
T ss_pred CCCCEEccc--cCCCCEEEecc
Confidence 999999998 99999999975
No 34
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.80 E-value=2e-18 Score=137.24 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=109.6
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
.+++...|++++.|++.+.+..++.||+++.|++++.|.. .++||++|.|+.++.|....+. ...+++.||++++
T Consensus 9 ~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~---~~~IG~~~~I~~~~~igg~~~~--~~~~~v~Ig~~~~ 83 (139)
T cd03350 9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGS---CAQIGKNVHLSAGAVIGGVLEP--LQATPVIIEDDVF 83 (139)
T ss_pred EECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECC---CCEECCCCEECCCCEECCcccc--cccCCeEECCCCE
Confidence 4566777888888888888888888999999999988863 4799999999999999753211 1235799999999
Q ss_pred ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC-cEEeecC
Q 024224 128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG-EVWGGNP 185 (270)
Q Consensus 128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~-~iv~G~p 185 (270)
|++++++. ++.||+++.|+++++|.+++.|+++ +++++|.+| +|++ .+++|+|
T Consensus 84 Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~~~g~~ 138 (139)
T cd03350 84 IGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVVVAGSL 138 (139)
T ss_pred ECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEEecccC
Confidence 99999884 6999999999999999999999999 999999999 9999 8899987
No 35
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.80 E-value=2e-18 Score=150.60 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=113.5
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCc-------
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKV------- 117 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~------- 117 (270)
..+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+ +++||++|.|+++++|...+++ +.+..
T Consensus 6 a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~---~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 6 AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDG---PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeC---CeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 45677889999999999999999999999999999999984 5799999999999999653221 11111
Q ss_pred ------------------cCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCC
Q 024224 118 ------------------LPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSG 178 (270)
Q Consensus 118 ------------------~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~ 178 (270)
+.++||++|.|+.++.| ++|.||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus 83 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~ 162 (254)
T cd03351 83 NNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRH 162 (254)
T ss_pred CCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCC
Confidence 23556666666666655 45777777777777778888999999999999999999999999
Q ss_pred cEEeecCceeccCCCHH
Q 024224 179 EVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 179 ~iv~G~pa~~i~~~~~~ 195 (270)
+++++ -+.+.+++++.
T Consensus 163 ~~Ig~-~s~V~~~i~~~ 178 (254)
T cd03351 163 AMVGG-GSGVVQDVPPY 178 (254)
T ss_pred CEECc-CCEEeeecCCC
Confidence 98876 36666666543
No 36
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.79 E-value=2e-18 Score=131.12 Aligned_cols=105 Identities=22% Similarity=0.338 Sum_probs=88.3
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
++.||+++.|++++.|. +.+.++||++|.|++++.|....|++.. .+.. ....++.||++||||.++
T Consensus 3 ~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~~-------~~~~-----~~~~~v~Ig~~~~ig~~~ 69 (107)
T cd05825 3 NLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYRS-------PAFP-----LITAPIVIGDGAWVAAEA 69 (107)
T ss_pred eEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCCc-------Cccc-----eecCCEEECCCCEECCCC
Confidence 57799999999999998 4467999999999999999876553221 1111 123568999999999999
Q ss_pred EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
.|.++++||++|+|+++++|.++ +|++++++|+||+++
T Consensus 70 ~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 70 FVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAGNPAVPV 107 (107)
T ss_pred EECCCCEECCCCEECCCCEEeCc--CCCCCEEECCccEeC
Confidence 99999999999999999999998 999999999999974
No 37
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.79 E-value=2.4e-18 Score=137.51 Aligned_cols=126 Identities=24% Similarity=0.355 Sum_probs=96.4
Q ss_pred eEECCCCEEcc-CCEEEcCCCceEECCCCEECCCCEEEcC-CCCCCC-CccCeEECCCcE-----ECcCcEEeceEECCC
Q 024224 71 VQVGRGSSIWY-GCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSG-KVLPTTIGDNVT-----VGHSAVLHGCTVEDE 142 (270)
Q Consensus 71 v~IG~~~~I~~-~~~I~~~~~~v~IG~~~~I~~~~~I~~~-~~~~~~-~~~~~~Ig~~v~-----I~~~~~i~~~~Ig~~ 142 (270)
+.||++++|++ .+.+. . ..++||++|.|++++.|... .|++.. ...+..++++.. ........++.||++
T Consensus 2 ~~iG~~s~i~~~~~~~~-~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 79 (145)
T cd03349 2 ISVGDYSYGSGPDCDVG-G-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGND 79 (145)
T ss_pred EEEeCceeeCCCCceEe-C-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCC
Confidence 56888899988 45554 3 57999999999999999887 665432 122333443332 122234467999999
Q ss_pred cEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC-CHHHHHHH
Q 024224 143 AFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL-TDEEIAFI 200 (270)
Q Consensus 143 ~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~-~~~~~~~~ 200 (270)
||||++++|.++++||++|+|+++|+|.++ +|++++++|+||++++.+ +++..+.+
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~Pa~~i~~~~~~~~~~~~ 136 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFDEETIERL 136 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEecCCEeehhhCCHHHHHHH
Confidence 999999999999999999999999999998 999999999999999874 44444443
No 38
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=144.88 Aligned_cols=131 Identities=21% Similarity=0.334 Sum_probs=103.6
Q ss_pred eCCCCEECCCcEE--e-cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224 55 VDKDAFVAPSASI--I-GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS 131 (270)
Q Consensus 55 i~~~~~I~~~~~i--~-~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~ 131 (270)
....+.+.+...+ + ..+.+|.+|.++.++.+. ....++||+++.++++|.|.+..|..+.... ..+..
T Consensus 49 ~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~--------~~~~~ 119 (190)
T COG0110 49 IGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFVTA--------NIGAL 119 (190)
T ss_pred cCCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChhhc--------ccCCc
Confidence 4444566666544 3 578999999999999975 5568999999999999999986553221110 01112
Q ss_pred cEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224 132 AVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 132 ~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
....+++||++||||++|+|++|++||++++||++|+|++| +|++++++|+||++++++.+..
T Consensus 120 ~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd--vp~~~iv~G~Pa~vir~~~~~~ 182 (190)
T COG0110 120 VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNPARVIRKRDVVA 182 (190)
T ss_pred eecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--cCCCeEEeCCcceEEEecchhh
Confidence 33356999999999999999999999999999999999999 9999999999999998876554
No 39
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.78 E-value=2.8e-18 Score=149.47 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=87.4
Q ss_pred CCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECC
Q 024224 62 APSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVED 141 (270)
Q Consensus 62 ~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~ 141 (270)
...+.+..++.|+.++.|++++.|... ..++||++|.||++|+|.. +++||... ..+....++||+
T Consensus 133 ~~~~~~~~gidI~~~a~IG~g~~I~h~-~givIG~~a~IGdnv~I~~----------~VtiGg~~---~~~~~~~p~IGd 198 (273)
T PRK11132 133 QNQISVAFQVDIHPAAKIGRGIMLDHA-TGIVIGETAVIENDVSILQ----------SVTLGGTG---KTSGDRHPKIRE 198 (273)
T ss_pred hhcceeeeeeEecCcceECCCeEEcCC-CCeEECCCCEECCCCEEcC----------CcEEecCc---ccCCCcCCEECC
Confidence 334444455666666666666666532 3578888888888888853 45555321 112223479999
Q ss_pred CcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCC
Q 024224 142 EAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLT 193 (270)
Q Consensus 142 ~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~ 193 (270)
+|+||+||.|.++++||++|+||+||+|.++ ||++++++|+||++++...
T Consensus 199 ~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G~PArvi~~~~ 248 (273)
T PRK11132 199 GVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVGKPE 248 (273)
T ss_pred CcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCcEEeCccc
Confidence 9999999999999999999999999999998 9999999999999987653
No 40
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.78 E-value=4.8e-18 Score=142.15 Aligned_cols=115 Identities=30% Similarity=0.573 Sum_probs=104.0
Q ss_pred CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-
Q 024224 57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH- 135 (270)
Q Consensus 57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~- 135 (270)
..+.+++.+.+.+++.||+++.|+++++|.+ +++||++|.|+.++.|.. ++.||++++|+.++.+.
T Consensus 86 ~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~ 152 (201)
T TIGR03570 86 FATLIHPSAIVSPSASIGEGTVIMAGAVINP---DVRIGDNVIINTGAIVEH----------DCVIGDYVHIAPGVTLSG 152 (201)
T ss_pred ceEEecCCeEECCCCEECCCCEECCCCEECC---CCEECCCcEECCCCEEcC----------CCEECCCCEECCCCEEeC
Confidence 3457778888888888999999999999873 479999999999999953 78999999999999887
Q ss_pred ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCc
Q 024224 136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA 186 (270)
Q Consensus 136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa 186 (270)
++.||++|+||.++.+.+++.||++|+|+++++|.++ +|++++|.|+||
T Consensus 153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~pa 201 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVPA 201 (201)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEeccC
Confidence 5999999999999999999999999999999999998 999999999997
No 41
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.78 E-value=4.4e-18 Score=153.12 Aligned_cols=146 Identities=15% Similarity=0.297 Sum_probs=91.8
Q ss_pred cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC---------------CceEECCCCEECCCCEEEcCCCCC
Q 024224 49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV---------------NSISVGSGTNIQDNSLVHVAKSNL 113 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------------~~v~IG~~~~I~~~~~I~~~~~~~ 113 (270)
+.+.+.|+++++|+|++.|++++.||++|.|+++++|.++. .+++||++|.|+++|+|......+
T Consensus 100 i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~ 179 (324)
T TIGR01853 100 VDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGY 179 (324)
T ss_pred eCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccc
Confidence 34444455555555555555544555554444444443211 245666666666666665322211
Q ss_pred CC----------CccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCC
Q 024224 114 SG----------KVLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERH 160 (270)
Q Consensus 114 ~~----------~~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~ 160 (270)
.. ..+.++||++|.||.++++ ++|.||++|.|++++.|.++++||++
T Consensus 180 ~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~ 259 (324)
T TIGR01853 180 AHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRN 259 (324)
T ss_pred eeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCC
Confidence 10 0135778888888887766 34666677777777777778888999
Q ss_pred cEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224 161 GMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 161 ~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~ 195 (270)
|++|+++.|.++++|++++++++. +.+.+++++.
T Consensus 260 ~~ig~~~~I~~~v~Ig~~~~ig~~-s~V~~~v~~~ 293 (324)
T TIGR01853 260 VIIGGQVGVAGHLEIGDNVTIGAK-SGVTKSIPPP 293 (324)
T ss_pred eEEccccccccCCEECCCCEEccC-CEeCCcCCCC
Confidence 999999999999999999988874 6666666553
No 42
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.78 E-value=4.6e-18 Score=146.91 Aligned_cols=116 Identities=24% Similarity=0.404 Sum_probs=85.9
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-
Q 024224 56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL- 134 (270)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i- 134 (270)
..+++|.|++.+..++.||+++.|+++ .+.. ++.||++|.|..+++|.. ++.||++|+|..++.+
T Consensus 98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vni---ga~IGeGt~I~~~a~IG~----------~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 98 KAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNI---GAYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG 163 (269)
T ss_pred cCCEEECCCcEECCCcEECCCCEEeee-EEcC---CcEECCCCEECCCcEECC----------CCEECCCCEEcCCcccC
Confidence 446677777777777777777777765 3331 256777777777777753 7788888888888877
Q ss_pred --------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEe-e-cC
Q 024224 135 --------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWG-G-NP 185 (270)
Q Consensus 135 --------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~-G-~p 185 (270)
++++|||+|+||++|.|.+|++||++|+||+|++|.+++ .||+++++. | .|
T Consensus 164 G~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~p 237 (269)
T TIGR00965 164 GVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLP 237 (269)
T ss_pred CCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCee
Confidence 447888888888888888888888888888888886643 489999997 3 56
No 43
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.78 E-value=5.2e-18 Score=140.73 Aligned_cols=115 Identities=30% Similarity=0.574 Sum_probs=104.8
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224 56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH 135 (270)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~ 135 (270)
...+.+++.+.+.+++.+|.+|.|+++++|.+ +++||++|.|++++.|.. ++.||++|+|+.++.+.
T Consensus 82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~ 148 (197)
T cd03360 82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINP---DARIGDNVIINTGAVIGH----------DCVIGDFVHIAPGVVLS 148 (197)
T ss_pred ccceEECCCeEECCCCEECCCCEEcCCCEECC---CCEECCCeEECCCCEECC----------CCEECCCCEECCCCEEc
Confidence 44567888888888899999999999999974 479999999999999953 78999999999999886
Q ss_pred c-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224 136 G-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP 185 (270)
Q Consensus 136 ~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p 185 (270)
+ ++||++|+||.+++|.+++.||++++|+++++|.++ +|+++++.|+|
T Consensus 149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g~p 197 (197)
T cd03360 149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVGNP 197 (197)
T ss_pred CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEecC
Confidence 5 999999999999999999999999999999999998 99999999998
No 44
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.78 E-value=5.4e-18 Score=149.27 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=90.1
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC----------------CceEECCCCEECCCCEEEcCC
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISVGSGTNIQDNSLVHVAK 110 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~v~IG~~~~I~~~~~I~~~~ 110 (270)
.++++++.||++++|+++++|..++.||++|.|+++++|..+. ++++||++|.||.+++|..+.
T Consensus 142 ~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga 221 (338)
T COG1044 142 AVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGA 221 (338)
T ss_pred CEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceecccc
Confidence 4555566666666666666666667777777777777775432 456777777777777776653
Q ss_pred CCCCC------------CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224 111 SNLSG------------KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177 (270)
Q Consensus 111 ~~~~~------------~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~ 177 (270)
.+.+- .+|++.||.+|.|..++-|.+ +.||++|.||..+.|.++..|+|++.|++.+.|.++ |++
T Consensus 222 ~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~--i~~ 299 (338)
T COG1044 222 LDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMAS--ITE 299 (338)
T ss_pred ccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccc--cCC
Confidence 33111 123333333333333332222 566666666666666677777777777777777776 666
Q ss_pred CcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224 178 GEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212 (270)
Q Consensus 178 ~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~ 212 (270)
..++.|.|+...+ .|.+....+..+.+
T Consensus 300 ~~~~gg~P~~p~k--------~w~k~~a~~~~l~~ 326 (338)
T COG1044 300 PGYSGGIPAQPIK--------EWLKTAALIRRLPE 326 (338)
T ss_pred CceeccCCCchHH--------HHHHHHHHHhhCHH
Confidence 6666666666443 44444444444444
No 45
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.77 E-value=9.3e-18 Score=157.57 Aligned_cols=140 Identities=21% Similarity=0.356 Sum_probs=98.3
Q ss_pred cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCC----
Q 024224 49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKS---- 111 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~---- 111 (270)
+...+.|++++.|++++.|.+++.||++|.|+++|.|.... .+..||++|.|++++.|.....
T Consensus 258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~ 337 (451)
T TIGR01173 258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG 337 (451)
T ss_pred ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC
Confidence 45566788889999999998888899998888888776210 0122333333333333221100
Q ss_pred --CC-----------C-------CCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224 112 --NL-----------S-------GKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 112 --~~-----------~-------~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
-. . ..-+++.||++|.|+.++++. +++||++||||.++.|.++++||++|+|
T Consensus 338 ~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 417 (451)
T TIGR01173 338 VHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI 417 (451)
T ss_pred cEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence 00 0 001236677777777777663 4899999999999999999999999999
Q ss_pred CCCCeecCCCccCCCcEEeecCceecc
Q 024224 164 AAGSLVRQNTRIPSGEVWGGNPAKFLR 190 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv~G~pa~~i~ 190 (270)
++|++|.++ ||+++++.|.|+++..
T Consensus 418 ~~g~~v~~~--v~~~~~~~~~~~~~~~ 442 (451)
T TIGR01173 418 AAGSTVTKD--VPEGALAISRARQRNI 442 (451)
T ss_pred ccCCEECcc--CCCCcEEEccCceeec
Confidence 999999999 9999999997776553
No 46
>PLN02739 serine acetyltransferase
Probab=99.76 E-value=1.6e-17 Score=147.63 Aligned_cols=82 Identities=27% Similarity=0.390 Sum_probs=64.8
Q ss_pred ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHH---HHHHHHHHHHHHHHH
Q 024224 136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEI---AFISQSATNYSNLAQ 212 (270)
Q Consensus 136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~---~~~~~~~~~~~~l~~ 212 (270)
.++||++|+||+||+|.++++||++|+||+||+|.++ ||++++++|+||++++.....+- .......+.+..+..
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~~~~~p~~~m~~DaT~e~~~~Ia~ 334 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFVDEQDPSLTMEYDATREFFQNVAV 334 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccCCccchhhhhhhhhhHHHHHHHHH
Confidence 4789999999999999999999999999999999998 99999999999999987653321 111222345556666
Q ss_pred HHHHHhc
Q 024224 213 VHAAENA 219 (270)
Q Consensus 213 ~~~~~~~ 219 (270)
.|+..+.
T Consensus 335 ay~~lf~ 341 (355)
T PLN02739 335 AYRETIP 341 (355)
T ss_pred HHHhhcc
Confidence 6665544
No 47
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=1.6e-17 Score=156.02 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=91.8
Q ss_pred CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC-----C---------CceEECCCCEECCCCEEEcCCCC----
Q 024224 51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD-----V---------NSISVGSGTNIQDNSLVHVAKSN---- 112 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----~---------~~v~IG~~~~I~~~~~I~~~~~~---- 112 (270)
....|++++.|+|++.|++++.||++|.|++++.|.+. . .++.||++|.|++++.|....-.
T Consensus 267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~ 346 (446)
T PRK14353 267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAK 346 (446)
T ss_pred CceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCE
Confidence 34455555566665555555555555555554443210 0 12344444444444444210000
Q ss_pred --CCCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 113 --LSGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 113 --~~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
......++.||++|.|+.++++ +++.||++|+||++++|.+++.||++++||++++|.++ +|+++++.
T Consensus 347 i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~~~~~ 424 (446)
T PRK14353 347 VNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDDALAL 424 (446)
T ss_pred ECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCCCEEE
Confidence 0001235678888888888765 25899999999999999999999999999999999998 99999999
Q ss_pred ecCceeccC
Q 024224 183 GNPAKFLRK 191 (270)
Q Consensus 183 G~pa~~i~~ 191 (270)
|.|....+.
T Consensus 425 g~~~~~~~~ 433 (446)
T PRK14353 425 GRARQETKP 433 (446)
T ss_pred ecCceEecc
Confidence 998876543
No 48
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.75 E-value=2.6e-17 Score=130.85 Aligned_cols=120 Identities=24% Similarity=0.371 Sum_probs=100.9
Q ss_pred CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe---
Q 024224 59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH--- 135 (270)
Q Consensus 59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~--- 135 (270)
..|+|.+.+++++.|++++.|.+++.+.. .+.||++|.|+.+++|.. .++||++|.|++++.+.
T Consensus 2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~---~~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~igg~~ 68 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNI---GAYVDEGTMVDSWATVGS----------CAQIGKNVHLSAGAVIGGVL 68 (139)
T ss_pred cccCCCcEECCCCEECCCCEECCCCEEcc---CCEECCCeEEcCCCEECC----------CCEECCCCEECCCCEECCcc
Confidence 35677777777777888888888888763 357888888888888853 78899999999999885
Q ss_pred ------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224 136 ------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 136 ------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~ 195 (270)
+++||++|+||++++|.++++||++++|+++++|.+++.|.++ |.-+-++++.++.
T Consensus 69 ~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~~~v~~~~~~~ 130 (139)
T cd03350 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETGEIYYGRVPPG 130 (139)
T ss_pred cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----CcccEEecccCCC
Confidence 4899999999999999999999999999999999999999887 7677777877654
No 49
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.75 E-value=1.1e-17 Score=128.94 Aligned_cols=151 Identities=17% Similarity=0.321 Sum_probs=130.1
Q ss_pred CCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCC--ccCeEECCCcEECcCcE
Q 024224 58 DAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGK--VLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 58 ~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~--~~~~~Ig~~v~I~~~~~ 133 (270)
+..+.....+-+ ++.+...+.+..+++|+||..++.||.+|.+++++.|....+.|+.. -.+..||++|.|+++|+
T Consensus 19 GNKVsr~~vlcGsQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cV 98 (184)
T KOG3121|consen 19 GNKVSRKHVLCGSQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECV 98 (184)
T ss_pred CCcccceeEeeccceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceE
Confidence 334444455543 67788889999999999999999999999999999999866554432 25789999999999999
Q ss_pred EeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHHHHHHHHHHHHHH
Q 024224 134 LHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYS 208 (270)
Q Consensus 134 i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~ 208 (270)
+....||..+.+|.+++|+.+|++.|.|.|-.++++.+++.+|+++.+.|+|+.+....|...+..+-...+.|+
T Consensus 99 VnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~lMi~~tksyY 173 (184)
T KOG3121|consen 99 VNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCTQNLMIEATKSYY 173 (184)
T ss_pred eehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888887777666555444
No 50
>PLN02694 serine O-acetyltransferase
Probab=99.75 E-value=1.4e-17 Score=145.37 Aligned_cols=107 Identities=23% Similarity=0.371 Sum_probs=84.1
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
++.|+.++.|++++.|.. ...++||++|.||++|+|.. ++++|.. +..+....++||++|+||+++
T Consensus 160 gvdI~p~A~IG~gv~Idh-~tGVVIGe~a~IGdnv~I~~----------~VtLGg~---g~~~~~r~piIGd~V~IGagA 225 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDH-ATGVVIGETAVIGNNVSILH----------HVTLGGT---GKACGDRHPKIGDGVLIGAGA 225 (294)
T ss_pred eEEeCCcceecCCEEEeC-CCCeEECCCcEECCCCEEee----------cceeCCc---ccccCCCccEECCCeEECCee
Confidence 344555555555555542 23578888888888888863 5566553 334445679999999999999
Q ss_pred EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224 150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192 (270)
Q Consensus 150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~ 192 (270)
+|.++++||++|+||+|++|.++ ||++++++|+||++++..
T Consensus 226 ~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v~G~PAkiv~~~ 266 (294)
T PLN02694 226 TILGNVKIGEGAKIGAGSVVLID--VPPRTTAVGNPARLVGGK 266 (294)
T ss_pred EECCCCEECCCCEECCCCEECCc--CCCCcEEEccCcEEEccC
Confidence 99999999999999999999998 999999999999999753
No 51
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=7.8e-18 Score=151.55 Aligned_cols=139 Identities=19% Similarity=0.357 Sum_probs=104.4
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--------------CceEECCCCEECCCCEEEcCCC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--------------NSISVGSGTNIQDNSLVHVAKS 111 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--------------~~v~IG~~~~I~~~~~I~~~~~ 111 (270)
.-++...+.|+.++.|.|++.+.+++.||++|.|+++|+|. +. ....||++|.||+.+.+.+++.
T Consensus 262 t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~ 340 (460)
T COG1207 262 TTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAV 340 (460)
T ss_pred eEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCc
Confidence 44667788999999999999999999999999999998875 21 1234444444444444433221
Q ss_pred C------------------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECC
Q 024224 112 N------------------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVER 159 (270)
Q Consensus 112 ~------------------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~ 159 (270)
- +...-+++.||.+|.||.|++.. .++||++++||+|+.+...++||+
T Consensus 341 L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd 420 (460)
T COG1207 341 LGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGD 420 (460)
T ss_pred ccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecC
Confidence 0 11123566777777888877652 389999999999999999999999
Q ss_pred CcEECCCCeecCCCccCCCcEEeecCce
Q 024224 160 HGMVAAGSLVRQNTRIPSGEVWGGNPAK 187 (270)
Q Consensus 160 ~~vIgagsvV~~~~~I~~~~iv~G~pa~ 187 (270)
++.|++||+|++| ||++++..+.+-.
T Consensus 421 ~a~iaAGStIT~D--Vp~~aLai~RarQ 446 (460)
T COG1207 421 GATIAAGSTITKD--VPEGALAISRARQ 446 (460)
T ss_pred CcEEcccceEccc--CCCCceeEeecce
Confidence 9999999999999 9999999875433
No 52
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=2.5e-17 Score=154.76 Aligned_cols=142 Identities=17% Similarity=0.288 Sum_probs=101.6
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CCC--------c------------------eEECCC
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DVN--------S------------------ISVGSG 97 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~~--------~------------------v~IG~~ 97 (270)
+++..+.|++++.|+|++.|.+++.||++|.|++++.|.. +.. + +.||++
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~ 330 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS 330 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence 4455677888888888888888888888888888876531 100 1 222222
Q ss_pred CEECCCCEEEc-----CCCC-CCCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 98 TNIQDNSLVHV-----AKSN-LSGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 98 ~~I~~~~~I~~-----~~~~-~~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
|.|++++.+.. .... ......++.||++|.||.++++ ++++|||+++||.+++|.++++||++++|
T Consensus 331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i 410 (448)
T PRK14357 331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI 410 (448)
T ss_pred cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEE
Confidence 22232222211 0000 0001235788899999988876 35999999999999999999999999999
Q ss_pred CCCCeecCCCccCCCcEEeecCceeccC
Q 024224 164 AAGSLVRQNTRIPSGEVWGGNPAKFLRK 191 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv~G~pa~~i~~ 191 (270)
++|++|.++ ||++++++|.|.++++.
T Consensus 411 ~ag~~v~~~--v~~~~~~~g~~~~~~~~ 436 (448)
T PRK14357 411 GAGSVITED--VPPYSLALGRARQIVKE 436 (448)
T ss_pred cCCCEECCc--CCCCcEEEccccEEecc
Confidence 999999999 99999999999998753
No 53
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.74 E-value=4.1e-17 Score=142.18 Aligned_cols=129 Identities=26% Similarity=0.419 Sum_probs=68.0
Q ss_pred EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec---
Q 024224 60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG--- 136 (270)
Q Consensus 60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~--- 136 (270)
++.+++.+.++++|+.+++|++++.|.+ ..|+.++.|+++|.|..... .++.+.||++|+|++++.+++
T Consensus 99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~p----~~V~iGa~Ig~gt~I~~~a~----IG~~a~IG~nv~I~~gv~I~g~~~ 170 (272)
T PRK11830 99 FKEAGVRVVPGAVVRRGAYIAPNVVLMP----SYVNIGAYVDEGTMVDTWAT----VGSCAQIGKNVHLSGGVGIGGVLE 170 (272)
T ss_pred hccCCcEEcCCeEECCCCEECCCcEEEE----EEECCCCEECCCcEEccccE----ECCCCEECCCcEECCCccCCCCcc
Confidence 3444444444555555555555555541 12222223333332222110 122455566666665555532
Q ss_pred ------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCC-------------ccCCCcEEe-e-----------cC
Q 024224 137 ------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT-------------RIPSGEVWG-G-----------NP 185 (270)
Q Consensus 137 ------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~-------------~I~~~~iv~-G-----------~p 185 (270)
++||++|+||++++|..++.||++|+|+++++|.+++ .||+++++. | .|
T Consensus 171 ~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~ 250 (272)
T PRK11830 171 PLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYC 250 (272)
T ss_pred ccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecCcccccCCCcCCcC
Confidence 5666666666666666666666666666655555422 278899887 6 48
Q ss_pred ceeccCCCHHH
Q 024224 186 AKFLRKLTDEE 196 (270)
Q Consensus 186 a~~i~~~~~~~ 196 (270)
|++++.+.+..
T Consensus 251 ~~i~~~~~~~~ 261 (272)
T PRK11830 251 AVIVKKVDAKT 261 (272)
T ss_pred cEEEEEccccc
Confidence 88888775543
No 54
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.73 E-value=5.1e-17 Score=132.71 Aligned_cols=109 Identities=20% Similarity=0.349 Sum_probs=76.4
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+-.++.|+|.|.|+.++.|..+. .++||+.+.||++|+|.. .++||..-.= +--
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg~-------------GvVIgeta~IGddv~I~~----------gVTLGgtg~~---~g~ 117 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHGT-------------GVVIGETAVIGDDVTIYH----------GVTLGGTGKE---SGK 117 (194)
T ss_pred hhcceeeCCCCeECCceEEcCCc-------------eEEEcceeEECCCeEEEc----------ceEecCCCCc---CCC
Confidence 34445566655544433343322 245666666666666652 3444432111 111
Q ss_pred eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK 191 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~ 191 (270)
...+||++|.||+||.|+++++||+|+.|||||||.++ ||++++++|.||+++..
T Consensus 118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd--VP~~~tvvGvPArii~~ 172 (194)
T COG1045 118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD--VPPNATVVGVPARVIGR 172 (194)
T ss_pred CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccC--CCCCceEecCcceEecc
Confidence 23789999999999999999999999999999999999 99999999999999973
No 55
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=5.8e-17 Score=153.71 Aligned_cols=144 Identities=17% Similarity=0.323 Sum_probs=107.9
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC------------CCceEECCCCEECCCCEEEcC------
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD------------VNSISVGSGTNIQDNSLVHVA------ 109 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~------------~~~v~IG~~~~I~~~~~I~~~------ 109 (270)
++...+.|++++.|+|++.|.+++.||++|.|+++|+|.+. ..++.||++|.|++++.|...
T Consensus 267 ~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~ 346 (482)
T PRK14352 267 WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEE 346 (482)
T ss_pred EEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCC
Confidence 34456678999999999999999999999999988887620 012334444555444444321
Q ss_pred CC--C----------------CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224 110 KS--N----------------LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 110 ~~--~----------------~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
.+ . +...-+++.||++|.||.++++. ++.||++|+||.+++|.++++||++++|
T Consensus 347 ~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i 426 (482)
T PRK14352 347 GKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT 426 (482)
T ss_pred CEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence 10 0 00011356888999999998774 3899999999999999999999999999
Q ss_pred CCCCeecCCCccCCCcEE-eecCceeccCCC
Q 024224 164 AAGSLVRQNTRIPSGEVW-GGNPAKFLRKLT 193 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv-~G~pa~~i~~~~ 193 (270)
++|++|.++ +|+++++ .|.|++.++.+.
T Consensus 427 gags~v~~~--v~~~~~~~~~~p~~~~~~~~ 455 (482)
T PRK14352 427 GAGTVIRED--VPPGALAVSEGPQRNIEGWV 455 (482)
T ss_pred CCCCEEcCC--CCCCcEEEeccccccccccc
Confidence 999999999 9999976 489999988754
No 56
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.73 E-value=1.7e-16 Score=129.38 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=101.5
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
.+...+.|++++.|++++.+.+++.||++|.|++++.|.+ ++.||++|.|++++.|. ++.|++++.
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~-----------~siig~~~~ 78 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRG---YTVLGDGCVVGNSVEVK-----------NSIIMDGTK 78 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcC---CCEECCCCEECCCcEEe-----------eeEecCCCE
Confidence 3345678999999999999999999999999999999984 46999999999999996 578888888
Q ss_pred ECcCcEEeceEECCCcEECCccEECC------------------------CcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 128 VGHSAVLHGCTVEDEAFVGMGATLLD------------------------GVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~------------------------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
|++++.+.++.|++++.|++++.+.. ++.|+++++||+++.+.+++.|++++++.
T Consensus 79 I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ 157 (163)
T cd05636 79 VPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY 157 (163)
T ss_pred eccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence 88888888888888888888887732 57888888888888888887888777665
No 57
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=6.6e-17 Score=152.31 Aligned_cols=137 Identities=23% Similarity=0.371 Sum_probs=96.9
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-------------CceEECCCCEECCCCEEEcCCC---------
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKS--------- 111 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~v~IG~~~~I~~~~~I~~~~~--------- 111 (270)
.+++++.|++++.|.+++.||++|.|+++|+|.... .++.||++|.|++++.|.....
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~ 346 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGN 346 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecc
Confidence 467777888888777777777777777777775100 0123334444444443332110
Q ss_pred ---------------CCCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCe
Q 024224 112 ---------------NLSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSL 168 (270)
Q Consensus 112 ---------------~~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsv 168 (270)
+.....+++.||++|.||.++++. +++|||+|+||.+|.|.++++||++++|++||+
T Consensus 347 ~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~ 426 (456)
T PRK09451 347 FVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTT 426 (456)
T ss_pred ceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCE
Confidence 000012356788888888887663 478999999999999999999999999999999
Q ss_pred ecCCCccCCCcEEe-ecCceeccCC
Q 024224 169 VRQNTRIPSGEVWG-GNPAKFLRKL 192 (270)
Q Consensus 169 V~~~~~I~~~~iv~-G~pa~~i~~~ 192 (270)
|++| ||+++++. |.|++.++++
T Consensus 427 v~~~--v~~~~~~~~~~~~~~~~~~ 449 (456)
T PRK09451 427 VTRD--VAENELVISRVPQRHIQGW 449 (456)
T ss_pred Eccc--cCCCCEEEeccCceecccc
Confidence 9999 99999985 5899988764
No 58
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=3.7e-17 Score=153.62 Aligned_cols=135 Identities=19% Similarity=0.299 Sum_probs=101.3
Q ss_pred CceeCCCCEECCCcEEe-----c----------CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----
Q 024224 52 APAVDKDAFVAPSASII-----G----------DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN---- 112 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~-----~----------~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~---- 112 (270)
...||+++.|++++.|. . ++.||++|.|++++.|.+ .+.||++|.|++++.|......
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~~~~i~~~~~ 356 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP---EAQIGSNCRIGNFVEIKKSQLGEGSK 356 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC---CCEEeCceEECCCEEEeccccCCCcE
Confidence 44566666666655543 1 244566777777777763 3578888888887777532111
Q ss_pred --CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 113 --LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 113 --~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
+....+++.||++|.||.++.+. +++||++|+||.++.|.++++||++++|++||+|.++ ||+++++.
T Consensus 357 i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~ 434 (450)
T PRK14360 357 VNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLAI 434 (450)
T ss_pred eccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEEE
Confidence 11112467899999999998774 5899999999999999999999999999999999998 99999999
Q ss_pred ecCceeccC
Q 024224 183 GNPAKFLRK 191 (270)
Q Consensus 183 G~pa~~i~~ 191 (270)
|+|++.+++
T Consensus 435 g~~~~~~~~ 443 (450)
T PRK14360 435 ARSRQVIKE 443 (450)
T ss_pred eccceeecc
Confidence 988887643
No 59
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.72 E-value=1.2e-16 Score=150.67 Aligned_cols=135 Identities=25% Similarity=0.498 Sum_probs=101.7
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC---------------
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--------------- 112 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--------------- 112 (270)
.++..+.|++++.|+|++.|.+++.||++|.|+++++|.+ +.||++|.|+.+++|....-.
T Consensus 264 ~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~ 339 (459)
T PRK14355 264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGT 339 (459)
T ss_pred EECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCC
Confidence 3455667888888888888888899999999999988862 466666666655554321000
Q ss_pred ----------C----------------CCCccCeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEEC
Q 024224 113 ----------L----------------SGKVLPTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVE 158 (270)
Q Consensus 113 ----------~----------------~~~~~~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig 158 (270)
+ ...-+++.||++|.||.++++ +++.||++|+||.++.|.++++||
T Consensus 340 ~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig 419 (459)
T PRK14355 340 ELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVG 419 (459)
T ss_pred EeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEEC
Confidence 0 000124577778888887755 248899999999999999999999
Q ss_pred CCcEECCCCeecCCCccCCCcEEeecCcee
Q 024224 159 RHGMVAAGSLVRQNTRIPSGEVWGGNPAKF 188 (270)
Q Consensus 159 ~~~vIgagsvV~~~~~I~~~~iv~G~pa~~ 188 (270)
++++|+|+|+|.++ ||+++++.|.+...
T Consensus 420 ~~~~i~a~s~v~~~--v~~~~~~~~~~~~~ 447 (459)
T PRK14355 420 RNSLIAAGTTVTKD--VPPDSLAIARSPQV 447 (459)
T ss_pred CCCEECCCCEEccc--CCCCcEEEecccee
Confidence 99999999999998 99999999854443
No 60
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.71 E-value=2.7e-16 Score=132.78 Aligned_cols=137 Identities=17% Similarity=0.276 Sum_probs=82.6
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEE------------cCCCCC-CCC----
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH------------VAKSNL-SGK---- 116 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~------------~~~~~~-~~~---- 116 (270)
.++++++|+|.+.|.+++.||++++|++++.|.+ +++||++|.|+++++|. ....-. +..
T Consensus 3 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~ 79 (205)
T cd03352 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGD---GVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAP 79 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECC---CCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEe
Confidence 3555556666666555555666666666555542 24555555555554443 322100 000
Q ss_pred ----------ccCeEECCCcEECcCcEE-----------------------eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 117 ----------VLPTTIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 117 ----------~~~~~Ig~~v~I~~~~~i-----------------------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
.+.+.|++++.|+.++.+ +++.||++++|++++.+..++.||++|+|
T Consensus 80 ~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i 159 (205)
T cd03352 80 DGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVII 159 (205)
T ss_pred cCCcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEE
Confidence 013455555555554443 23566666667777777788899999999
Q ss_pred CCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224 164 AAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD 194 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv~G~pa~~i~~~~~ 194 (270)
+++++|.++++|++++++.+ .+.+.++.++
T Consensus 160 g~~~~v~~~~~ig~~~~i~~-~s~v~~~~~~ 189 (205)
T cd03352 160 GGQVGIAGHLTIGDGVVIGA-GSGVTSIVPP 189 (205)
T ss_pred cCCCEEeCCcEECCCCEEcC-CCEEeeECCC
Confidence 99999999999999998775 3555565554
No 61
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.70 E-value=1.4e-16 Score=139.62 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=117.1
Q ss_pred hhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC--CCCCccCeEEC
Q 024224 46 MNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN--LSGKVLPTTIG 123 (270)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~--~~~~~~~~~Ig 123 (270)
.+++.+.+.|++++.|+|++.|.++++||++|.|+++++|.+ +++||++|.|+++++|...+++ +.+....+.||
T Consensus 8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g---~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDG---HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcC---ccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 455678889999999999999999999999999999999984 5799999999999999865543 23333356666
Q ss_pred CCcEECcCcEEe--------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224 124 DNVTVGHSAVLH--------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177 (270)
Q Consensus 124 ~~v~I~~~~~i~--------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~ 177 (270)
++|.|+++++|+ +|.||++|++++++.+.++++||++|+||+++.|.++++|++
T Consensus 85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~ 164 (262)
T PRK05289 85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA 164 (262)
T ss_pred CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence 666666666553 355555556666666667788999999999999999999999
Q ss_pred CcEEeecCceeccCCCHHHHH
Q 024224 178 GEVWGGNPAKFLRKLTDEEIA 198 (270)
Q Consensus 178 ~~iv~G~pa~~i~~~~~~~~~ 198 (270)
++++.+ -+.+.+++++....
T Consensus 165 ~~~Ig~-gs~V~~di~~~~~~ 184 (262)
T PRK05289 165 HAMVGG-MSGVSQDVPPYVLA 184 (262)
T ss_pred CCEEee-ecceeccCCCCeEE
Confidence 998886 48888888866543
No 62
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.70 E-value=3e-16 Score=118.88 Aligned_cols=109 Identities=23% Similarity=0.449 Sum_probs=89.6
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
+++||++++|++++.|.++ .++.||++|.|+++|.|....+ ..++..+.+.......++.||++|+|+.++
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~ 71 (109)
T cd04647 1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH--------DIDDPERPIEQGVTSAPIVIGDDVWIGANV 71 (109)
T ss_pred CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC--------CCCccccccccccccCCeEECCCCEECCCC
Confidence 3678888888888888853 4789999999999999986532 223334444445566779999999999999
Q ss_pred EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 150 TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 150 ~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
.+.+++.|+++++|++++.|.++ +|+++++.|.||+++
T Consensus 72 ~i~~~~~ig~~~~i~~~~~v~~~--i~~~~i~~g~pa~~~ 109 (109)
T cd04647 72 VILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPAKVI 109 (109)
T ss_pred EEcCCCEECCCCEECCCCEEeeE--CCCCCEEEccccEeC
Confidence 99999999999999999999986 999999999999974
No 63
>PLN02296 carbonate dehydratase
Probab=99.70 E-value=1.2e-15 Score=133.49 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=115.8
Q ss_pred chhhhHHHHHhHHHHHHHHHHHH-hccc-----------ccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEec
Q 024224 2 GTLGRAVYTVGFWIRETGQALDR-LGCR-----------LQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIG 69 (270)
Q Consensus 2 ~~~~~~i~~~g~~~~~~~~~l~~-~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~ 69 (270)
+++.++++.+|..+..++-.+.. ..++ +.+.......-..... ...+...+.||+++.|++++.|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p-~A~V~G~V~IG~~~~I~~gavI~g 87 (269)
T PLN02296 9 YTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAP-SASVIGDVQVGRGSSIWYGCVLRG 87 (269)
T ss_pred HHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECC-CcEEEcceEECCCCEECCCCEEEc
Confidence 46788999999999888877751 1111 1111111111101111 111223467889999999998887
Q ss_pred C---eEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceE
Q 024224 70 D---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCT 138 (270)
Q Consensus 70 ~---v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~ 138 (270)
+ +.||++|.|+++|+|..+. .+++||++|.|+++|+|+ .++||++|+|+.++++ .+++
T Consensus 88 ~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~-----------g~~Igd~v~IG~ga~I~~gv~ 156 (269)
T PLN02296 88 DVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLH-----------GCTVEDEAFVGMGATLLDGVV 156 (269)
T ss_pred CCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceec-----------CCEECCCcEECCCcEECCCeE
Confidence 5 5999999999999997321 357999999999999985 6899999999999977 4699
Q ss_pred ECCCcEECCccEECCCcEECCCcEE-CCCCeecCC
Q 024224 139 VEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQN 172 (270)
Q Consensus 139 Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~ 172 (270)
||+++.|+++|.|.+++.|++++++ |..+.+.++
T Consensus 157 Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~ 191 (269)
T PLN02296 157 VEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRK 191 (269)
T ss_pred ECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCC
Confidence 9999999999999999999999886 555655554
No 64
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.70 E-value=2.2e-16 Score=128.65 Aligned_cols=51 Identities=29% Similarity=0.510 Sum_probs=48.6
Q ss_pred eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCce
Q 024224 135 HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK 187 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~ 187 (270)
+.++||++|+||++|.|.++++||++|+|+++++|.+| ||++++++|+|||
T Consensus 112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G~Par 162 (162)
T TIGR01172 112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVGVPAR 162 (162)
T ss_pred cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEeecCC
Confidence 45799999999999999999999999999999999998 9999999999986
No 65
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.70 E-value=3e-16 Score=146.64 Aligned_cols=74 Identities=22% Similarity=0.422 Sum_probs=65.4
Q ss_pred ccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee-cCce
Q 024224 117 VLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG-NPAK 187 (270)
Q Consensus 117 ~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G-~pa~ 187 (270)
-++++||++|.||+++++. +++||++|+||.+++|.++++||++++|++|++|.+| +|+++++.| .|++
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~~~~~~ 417 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAISRAPQK 417 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEeccCce
Confidence 4678999999999998774 4899999999999999999999999999999999999 999999986 6776
Q ss_pred eccCC
Q 024224 188 FLRKL 192 (270)
Q Consensus 188 ~i~~~ 192 (270)
..+.+
T Consensus 418 ~~~~~ 422 (430)
T PRK14359 418 NIKNF 422 (430)
T ss_pred ehhhH
Confidence 55543
No 66
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.69 E-value=3.6e-17 Score=135.24 Aligned_cols=56 Identities=32% Similarity=0.626 Sum_probs=53.4
Q ss_pred eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCH
Q 024224 137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTD 194 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~ 194 (270)
..||||||||++++|.++++||+|++|+|||+|.+| ||++++++|+|||.++..++
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~AvGnPAklIg~~~e 256 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTLAVGNPAKLIGKIDE 256 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEEeccceEEec--cCCCceecCCchhhcccccc
Confidence 489999999999999999999999999999999999 99999999999999987654
No 67
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.69 E-value=5.3e-16 Score=146.11 Aligned_cols=140 Identities=19% Similarity=0.317 Sum_probs=99.5
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC----C--------CceEECCCCEECCCCEEEcCCC----
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD----V--------NSISVGSGTNIQDNSLVHVAKS---- 111 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~--------~~v~IG~~~~I~~~~~I~~~~~---- 111 (270)
+++..+.|++++.|++++.|.+++.||++|.|++++.|... . .+..||++|.|++++.|.....
T Consensus 261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~ 340 (458)
T PRK14354 261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE 340 (458)
T ss_pred EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence 45566778888888888888888888888888888877521 0 0123444444444444432100
Q ss_pred ---------------C-----CCCCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEE
Q 024224 112 ---------------N-----LSGKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 112 ---------------~-----~~~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
+ +....++++||++|.|+.++.+. ++.||+++++|.+++|.++++||++++|
T Consensus 341 ~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v 420 (458)
T PRK14354 341 VKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYI 420 (458)
T ss_pred cEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEE
Confidence 0 00011345666667777766552 4889999999999999999999999999
Q ss_pred CCCCeecCCCccCCCcEEeecCceec
Q 024224 164 AAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 164 gagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
+++|+|.++ ||+++++.|.|..+-
T Consensus 421 ~~~~~v~~~--~~~~~~~~~~~~~~~ 444 (458)
T PRK14354 421 AAGSTITKD--VPEDALAIARARQVN 444 (458)
T ss_pred CCCCEECCC--CCCCCEEEeccceec
Confidence 999999998 999999999987753
No 68
>PLN02357 serine acetyltransferase
Probab=99.68 E-value=2.8e-16 Score=140.73 Aligned_cols=86 Identities=20% Similarity=0.372 Sum_probs=66.8
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
++||++|.||++|+|.. +++||... .......++||++|+||+||.|.++++||++++||+|++|.+
T Consensus 247 iVIGe~avIGdnV~I~~----------gVtIGg~g---~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 247 VVIGETAVVGNNVSILH----------NVTLGGTG---KQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred eEECCCCEECCCCEEeC----------CceecCcc---ccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 55666666666666642 34444321 111124589999999999999999999999999999999999
Q ss_pred CCccCCCcEEeecCceeccCC
Q 024224 172 NTRIPSGEVWGGNPAKFLRKL 192 (270)
Q Consensus 172 ~~~I~~~~iv~G~pa~~i~~~ 192 (270)
+ ||++++++|+||+++...
T Consensus 314 d--VP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 314 D--VPPRTTAVGNPARLIGGK 332 (360)
T ss_pred c--cCCCcEEECCCeEEEccC
Confidence 8 999999999999999754
No 69
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.68 E-value=1.4e-15 Score=124.21 Aligned_cols=112 Identities=16% Similarity=0.310 Sum_probs=99.5
Q ss_pred CCCceeCCCCEECCCcEEe---cCeEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224 50 DKAPAVDKDAFVAPSASII---GDVQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLP 119 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~ 119 (270)
.....||+++.|+|++.+. +.+.||++|.|+++++|..+. .++.||++|.|..++.|. .
T Consensus 15 ~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~-----------~ 83 (164)
T cd04646 15 RGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE-----------A 83 (164)
T ss_pred cCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE-----------e
Confidence 4567899999999999986 569999999999999998542 357899999999999987 5
Q ss_pred eEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224 120 TTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 120 ~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
++||++|+|+.++++ .+++||++|+||++|+|.+++.|+++++++++..+.+.
T Consensus 84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~ 137 (164)
T cd04646 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRT 137 (164)
T ss_pred eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEe
Confidence 999999999999988 55999999999999999999999999999999888885
No 70
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.67 E-value=2.5e-15 Score=123.12 Aligned_cols=118 Identities=26% Similarity=0.433 Sum_probs=103.4
Q ss_pred CCCceeCCCCEECCCcEEec----CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECC
Q 024224 50 DKAPAVDKDAFVAPSASIIG----DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD 124 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~ 124 (270)
.....+|++++|++++.|.. ++.||++|.|++++.|.+.. ..+.||++|.|+.++.|.+ ++.||+
T Consensus 18 ~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g----------~~~Ig~ 87 (167)
T cd00710 18 IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG----------PAYIGD 87 (167)
T ss_pred EeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC----------CEEECC
Confidence 34567888999999998876 48999999999999997432 3689999999999999974 799999
Q ss_pred CcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224 125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180 (270)
Q Consensus 125 ~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i 180 (270)
+|+|+.++.+..++||++|+||++|.|. ++.|++++++++++++.++ .+.+.+
T Consensus 88 ~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~--~~~~~~ 140 (167)
T cd00710 88 NCFIGFRSVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQ--TQADAL 140 (167)
T ss_pred CCEECCCCEEECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCC--Cccccc
Confidence 9999999999999999999999999995 6999999999999999988 665543
No 71
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=2.3e-15 Score=122.71 Aligned_cols=105 Identities=23% Similarity=0.376 Sum_probs=84.2
Q ss_pred CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224 51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~ 130 (270)
....|++++.|++++.|.+++.||++|.|++++.|. +..||+++.|++++.+. +++|++++.|++
T Consensus 34 ~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~----~siig~~~~I~~~~~i~-----------~siIg~~~~I~~ 98 (163)
T cd05636 34 GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK----NSIIMDGTKVPHLNYVG-----------DSVLGENVNLGA 98 (163)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe----eeEecCCCEeccCCEEe-----------cCEECCCCEECC
Confidence 345566666666666666677777777777777775 25778888888877775 678999999999
Q ss_pred CcEEe-------------------------ceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224 131 SAVLH-------------------------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170 (270)
Q Consensus 131 ~~~i~-------------------------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~ 170 (270)
++.+. ++.||++++||.++.|.+++.||++++|++|++|.
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV~ 163 (163)
T cd05636 99 GTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR 163 (163)
T ss_pred CcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEeC
Confidence 98773 48999999999999999999999999999999873
No 72
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.66 E-value=3.1e-16 Score=121.89 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=135.1
Q ss_pred CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC---CCCCccCeEECCCcE
Q 024224 51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN---LSGKVLPTTIGDNVT 127 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~---~~~~~~~~~Ig~~v~ 127 (270)
..++|.+++.+.--+.|.|+++|+++|.++|.+++.++.++++||+||.|.+.++|...-.+ ++..+.+..||.+..
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 34678888888888889999999999999999999999999999999999999999763322 334456899999999
Q ss_pred ECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCce--eccCC---CHHHHHHHHH
Q 024224 128 VGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK--FLRKL---TDEEIAFISQ 202 (270)
Q Consensus 128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~--~i~~~---~~~~~~~~~~ 202 (270)
+.-+|......+||+.+|+..+.+.+||.+-++|+|||+..|.....+|+++++.|.-.. ..++. ...++..|++
T Consensus 87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtlQidFLrK 166 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTLQIDFLRK 166 (190)
T ss_pred EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985432 22221 1345667777
Q ss_pred HHHHHHHHHH
Q 024224 203 SATNYSNLAQ 212 (270)
Q Consensus 203 ~~~~~~~l~~ 212 (270)
....|..|.+
T Consensus 167 iLPnYHHL~k 176 (190)
T KOG4042|consen 167 ILPNYHHLYK 176 (190)
T ss_pred Hccchhhhhc
Confidence 7777776654
No 73
>PRK10191 putative acyl transferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=119.99 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=49.4
Q ss_pred ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 136 GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 136 ~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
.+.||++|+||+++.+.+++.||++++|+++++|.++ +|+++++.|.||++.
T Consensus 92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d--v~~~~~v~G~pA~~~ 143 (146)
T PRK10191 92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS--VPDNALVVGEKARVK 143 (146)
T ss_pred CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc--cCCCcEEEccCcEEE
Confidence 3689999999999999999999999999999999998 999999999999864
No 74
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.64 E-value=2.2e-15 Score=118.70 Aligned_cols=100 Identities=12% Similarity=0.223 Sum_probs=76.3
Q ss_pred CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEEC----CCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQ----DNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~----~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
++|.|.+.+...+.||+++.|.+++++.. ++.||++|.|. .+++|. |++.||++|.|. +.+
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~---~a~IG~~~iIn~~ig~~a~Ig----------hd~~IG~~~~I~--~~l 66 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNF---NAGTLGNCMVEGRISSGVIVG----------KGSDVGGGASIM--GTL 66 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEcc---CCEECCCeEECCcccCCEEEC----------CCCEECCCCEEE--EEC
Confidence 45666777777777888888888888774 35777777776 555553 466666666666 333
Q ss_pred -e----ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224 135 -H----GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175 (270)
Q Consensus 135 -~----~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I 175 (270)
. ++.||++||||++|+| ++.||++|+||+|++|.+++.|
T Consensus 67 ~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 67 SGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence 2 2899999999999999 7999999999999999998654
No 75
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.64 E-value=3.5e-15 Score=140.53 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=59.2
Q ss_pred CeEECCCcEECcCcEE--------eceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceec
Q 024224 119 PTTIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFL 189 (270)
Q Consensus 119 ~~~Ig~~v~I~~~~~i--------~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i 189 (270)
+++||+++.|++++++ +++.||+++++|.++.|.++++||++++|+++++|.++ +|+++++.|......
T Consensus 373 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~--~~~~~~~~~~~~~~~ 449 (456)
T PRK14356 373 DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKD--VPDGSLAIARGRQKN 449 (456)
T ss_pred CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEecc--CCCCcEEEEecceee
Confidence 4677777888877654 34899999999999999999999999999999999998 999999998654433
No 76
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=121.25 Aligned_cols=101 Identities=28% Similarity=0.498 Sum_probs=89.8
Q ss_pred CceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 52 APAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
++.|++++.|+|++++.+ .+.||++|.|.++|+|.++. .+++||++|.||+++.|+ .|+||++|.
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH-----------Gc~Ig~~~l 97 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH-----------GCTIGDNVL 97 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE-----------EeEECCCcE
Confidence 468899999999999987 49999999999999999754 579999999999999997 699999999
Q ss_pred ECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
||.++++ +++.||++|+||+||.|.++-.++++.++
T Consensus 98 IGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~ 134 (176)
T COG0663 98 IGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV 134 (176)
T ss_pred EecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence 9999965 55999999999999999998888887765
No 77
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=138.03 Aligned_cols=132 Identities=22% Similarity=0.354 Sum_probs=90.9
Q ss_pred CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcC-----------C--CceEECCCCEECCCCEEEcCCC-----
Q 024224 50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGD-----------V--NSISVGSGTNIQDNSLVHVAKS----- 111 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-----------~--~~v~IG~~~~I~~~~~I~~~~~----- 111 (270)
.....||+++.|++++.|.+++.||++|.|+++|.|... . .++.||++|.|++++.+.....
T Consensus 268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~ 347 (481)
T PRK14358 268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV 347 (481)
T ss_pred cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence 455567788888888888777777777777777665311 0 0123333333333333321110
Q ss_pred --------------CCC-----CCccCeEECCCcEECcCcEEe--------ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 112 --------------NLS-----GKVLPTTIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 112 --------------~~~-----~~~~~~~Ig~~v~I~~~~~i~--------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
... ..-++++||++|.||+++++. ++.||++|+||++|+|.++++||++++|+
T Consensus 348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence 000 012468888888888888774 47999999999999999999999999999
Q ss_pred CCCeecCCCccCCCcEEee
Q 024224 165 AGSLVRQNTRIPSGEVWGG 183 (270)
Q Consensus 165 agsvV~~~~~I~~~~iv~G 183 (270)
++|+|.++ +|+++++.+
T Consensus 428 ~gs~v~~~--v~~~~~~~~ 444 (481)
T PRK14358 428 AGSAVHDD--VPEGAMAVA 444 (481)
T ss_pred CCCEEecc--cCCCCEEEe
Confidence 99999998 999998885
No 78
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.60 E-value=5.8e-15 Score=126.00 Aligned_cols=113 Identities=19% Similarity=0.342 Sum_probs=93.0
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224 56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH 135 (270)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~ 135 (270)
-++++|.|.+.+.-+++||+|+++++.+.|. -+..+++.|.|.-++++.+ ..+||++|+||.|+.|.
T Consensus 106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVN---igA~~~~gtMVd~~as~G~----------~a~VGkn~higgGa~I~ 172 (271)
T COG2171 106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVN---IGAGTGEGTMVDGRASVGS----------CAQVGKNSHIGGGASIG 172 (271)
T ss_pred cCceeecCccEEeeccEECCCcEEcccceEE---ECcccCcceEEeeeeeeec----------cEEECCCcccCCcceEe
Confidence 3458999999999999999999999988876 2346666677766666643 68899999999999884
Q ss_pred ---------ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEee
Q 024224 136 ---------GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGG 183 (270)
Q Consensus 136 ---------~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G 183 (270)
+++|||||+||+||.+..|+.+|++|+|++|++|+++ .|.+....|
T Consensus 173 GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~--tki~~~~~g 227 (271)
T COG2171 173 GVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQD--TKIYDRVAG 227 (271)
T ss_pred EEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCC--cceEEeecc
Confidence 3899999999999999999999999999999999999 444444444
No 79
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.60 E-value=3.1e-14 Score=115.94 Aligned_cols=110 Identities=22% Similarity=0.370 Sum_probs=90.7
Q ss_pred CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCCCCCCccC
Q 024224 52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSNLSGKVLP 119 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~ 119 (270)
...+++++.|+|++.|.++ +.||++|.|+++++|.+.. .++.||++|.|++++++. .
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~-----------~ 89 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN-----------A 89 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE-----------e
Confidence 6689999999999999876 7999999999999998532 468999999999999997 5
Q ss_pred eEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECC-CCeecCC
Q 024224 120 TTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAA-GSLVRQN 172 (270)
Q Consensus 120 ~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIga-gsvV~~~ 172 (270)
+.||+++.|++++.+. ++.|+++++|++++.|.+++.|++++++++ .+.+.++
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~ 144 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGE 144 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEe
Confidence 8899999999988774 477888888888887777777777777754 5555554
No 80
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.60 E-value=1.8e-14 Score=108.10 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=73.7
Q ss_pred eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccE
Q 024224 71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGAT 150 (270)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~ 150 (270)
+.|++++.|++++.|.. ...+.||+++.|+++|.|.. .+.|++++.+ ..+.++.||++|+|+.++.
T Consensus 3 ~~i~~~~~ig~~~~i~~-~~~~~ig~~~~Ig~~~~i~~----------~~~i~~~~~~---~~~~~~~Ig~~~~Ig~~~~ 68 (101)
T cd03354 3 IDIHPGAKIGPGLFIDH-GTGIVIGETAVIGDNCTIYQ----------GVTLGGKGKG---GGKRHPTIGDNVVIGAGAK 68 (101)
T ss_pred eEeCCCCEECCCEEECC-CCeEEECCCCEECCCCEEcC----------CCEECCCccC---CcCCCCEECCCcEEcCCCE
Confidence 44555555555555542 13456777777777777642 3344444332 1357799999999999999
Q ss_pred ECCCcEECCCcEECCCCeecCCCccCCCcEEeecC
Q 024224 151 LLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNP 185 (270)
Q Consensus 151 I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~p 185 (270)
+.++++||++++|+++++|.++ +|+++++.|+|
T Consensus 69 i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~G~P 101 (101)
T cd03354 69 ILGNITIGDNVKIGANAVVTKD--VPANSTVVGVP 101 (101)
T ss_pred EECcCEECCCCEECCCCEECcc--cCCCCEEEeCC
Confidence 9999999999999999999998 99999999998
No 81
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.58 E-value=1.3e-14 Score=126.91 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=84.7
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCE---ECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTN---IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS 131 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~---I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~ 131 (270)
+..+++|++.+.|..+++||++|.|+++++|..+ --++|+++. |..+++|. |++.||++|.| +
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~n--AgtiG~~~IEgrInsGavIG----------hds~IG~gasI--g 240 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFN--AGTEGPSMVEGRISAGVMVG----------KGSDLGGGCST--M 240 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcC--cEecCCceEecccccCCEEC----------CCCEECCCCEE--e
Confidence 5667788888888888888888888888888632 123787777 77777774 57888888888 4
Q ss_pred cEE-ec----eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224 132 AVL-HG----CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175 (270)
Q Consensus 132 ~~i-~~----~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I 175 (270)
+++ .+ +.||++|+||+||.| ++.||++|+|++|++|..++.|
T Consensus 241 ~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 241 GTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred EEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 444 34 899999999999999 8999999999999999998765
No 82
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.57 E-value=3.3e-14 Score=123.81 Aligned_cols=103 Identities=16% Similarity=0.332 Sum_probs=87.9
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCce-EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSI-SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v-~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
+.++++|.+.+.+.-+++||+++.|+++++|.. ++ +||++ .| ++.| .|+++||++|.|++++.
T Consensus 150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~---nAgtIG~~-iI--~g~I----------~HdvvIGd~~~IgpGvs 213 (319)
T TIGR03535 150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNF---NAGTLGAS-MV--EGRI----------SAGVVVGDGSDIGGGAS 213 (319)
T ss_pred CCCccEECCCceeeeccEECCCCEEcCCCEEcc---CceEecCc-eE--EEEE----------ccCCEECCCCEECCCce
Confidence 456888888888888999999999999999874 34 57775 55 3555 46999999999999999
Q ss_pred Eec---------eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCcc
Q 024224 134 LHG---------CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRI 175 (270)
Q Consensus 134 i~~---------~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I 175 (270)
|.+ +.||++|+||+||.| ++.||++|+||+|++|.+++.|
T Consensus 214 I~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 214 IMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred ecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 544 899999999999999 8999999999999999998655
No 83
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-14 Score=135.35 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=103.9
Q ss_pred HHHHHhcccccCcchhhhhhhhhhhhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCE
Q 024224 20 QALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTN 99 (270)
Q Consensus 20 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~ 99 (270)
+.+.||.+.+.....+... ..+.+-..+..-++.+.+.+.+.++.++.||.++.|+.++.|. +.+||.+|.
T Consensus 288 DiI~RW~YP~Vpd~~~~~~-----q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~----NSVIG~~c~ 358 (673)
T KOG1461|consen 288 DIIQRWTYPLVPDINFSGN-----QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS----NSVIGANCR 358 (673)
T ss_pred HHHHhhcccccccccCCCC-----ceeeecccccccCccceehhhccccceEEecccccccCCCeee----cceecCCCE
Confidence 4456777777554433321 1122222333446777888888888999999999999999998 469999999
Q ss_pred ECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224 100 IQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 100 I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
||++|.|. ++.|+++|+||.||.|+.+.|++++.|++++.+.+|+++|.+++++.+-++.++
T Consensus 359 IgsN~~I~-----------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 359 IGSNVRIK-----------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ecCceEEe-----------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 99999998 799999999999999999999999999999999888887777777766666555
No 84
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=4.3e-14 Score=132.08 Aligned_cols=93 Identities=16% Similarity=0.330 Sum_probs=71.4
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc----------EECcCcEEeceEECCCcEECCccEECC-------C
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV----------TVGHSAVLHGCTVEDEAFVGMGATLLD-------G 154 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v----------~I~~~~~i~~~~Ig~~~~Ig~~a~I~~-------g 154 (270)
.+||++|.|++++.|. ++.||++| .|++++.+++|+||++|.||+++++.. +
T Consensus 299 ~~ig~~~~i~~~~~i~-----------~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~ 367 (430)
T PRK14359 299 SDVGPLAHIRPKSEIK-----------NTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHK 367 (430)
T ss_pred CEECCCCEECCCcEEe-----------ccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcC
Confidence 4566666666666664 34444444 677777788899999999999998864 3
Q ss_pred cEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224 155 VVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 155 v~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
++||++|+||+++.|.++++|++++++++ -+.+.+++++..
T Consensus 368 ~~ig~~~~ig~~~~i~~~~~ig~~~~i~~-g~~v~~~v~~~~ 408 (430)
T PRK14359 368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAA-GSTVTKDVPKGS 408 (430)
T ss_pred CEECCCeEEcCCCEEeCCcEECCCCEECC-CCEEccccCCCc
Confidence 89999999999999999999999987764 466677766543
No 85
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=3.7e-14 Score=133.33 Aligned_cols=137 Identities=15% Similarity=0.322 Sum_probs=98.2
Q ss_pred cCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEc----CC--------CceEECCCCEECCCCEEEcCCCCCCCC
Q 024224 49 FDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRG----DV--------NSISVGSGTNIQDNSLVHVAKSNLSGK 116 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~----~~--------~~v~IG~~~~I~~~~~I~~~~~~~~~~ 116 (270)
++..+.+++++.|++++.|.+++.||++|.|++++.|.. +. .+..||++|.|+++|.|..
T Consensus 259 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~-------- 330 (450)
T PRK14360 259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP-------- 330 (450)
T ss_pred EeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC--------
Confidence 344566788888888888888888999999988888751 10 0234556666666666642
Q ss_pred ccCeEECCCcEECcCcE-----------------EeceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCC
Q 024224 117 VLPTTIGDNVTVGHSAV-----------------LHGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 117 ~~~~~Ig~~v~I~~~~~-----------------i~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~ 172 (270)
++.||++|.|+.++. +.++.||++|.||+++++.. +++||++|+||++++|..+
T Consensus 331 --~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~ 408 (450)
T PRK14360 331 --EAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP 408 (450)
T ss_pred --CCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence 344555555554443 34467888999999988743 7899999999999999999
Q ss_pred CccCCCcEEeecCceeccCCCHHH
Q 024224 173 TRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 173 ~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
++|+++++++. .+.+.+++++..
T Consensus 409 ~~ig~~~~v~~-~~~v~~~~~~~~ 431 (450)
T PRK14360 409 ITLGEDVTVAA-GSTITKDVPDNS 431 (450)
T ss_pred cEECCCCEECC-CCEECccCCCCC
Confidence 99999987764 677777777643
No 86
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.56 E-value=1.5e-13 Score=110.99 Aligned_cols=112 Identities=23% Similarity=0.342 Sum_probs=97.1
Q ss_pred CCCceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCC
Q 024224 50 DKAPAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDN 125 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~ 125 (270)
...+.||+++.|++++.|.+. +.||++|.|+++|.|.++. .++.||+++.|++++.+. +++||++
T Consensus 16 ~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~ 84 (154)
T cd04650 16 IGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----------GAKVGNY 84 (154)
T ss_pred EeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----------CcEECCC
Confidence 345678999999999998876 8999999999999998532 358999999999999996 6899999
Q ss_pred cEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcE-ECCCCeecCC
Q 024224 126 VTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGM-VAAGSLVRQN 172 (270)
Q Consensus 126 v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v-IgagsvV~~~ 172 (270)
|+|+.++.+. ++.||+++++++++.+.++..++++++ .|..+.+.++
T Consensus 85 ~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~ 133 (154)
T cd04650 85 VIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRK 133 (154)
T ss_pred CEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEecc
Confidence 9999999875 599999999999999999999999999 4666777665
No 87
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.54 E-value=1.2e-13 Score=119.57 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=76.6
Q ss_pred ceeCCCCEECCCcEEec-----CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 53 PAVDKDAFVAPSASIIG-----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~-----~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
+.+.++++|++++.|.+ ++.||++|.|..++.|.+ .+.||++|.|+.++.|.+... +...++++||++|+
T Consensus 107 a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~---~v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIgDnv~ 181 (269)
T TIGR00965 107 AAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGS---CAQIGKNVHLSGGVGIGGVLE--PLQANPTIIEDNCF 181 (269)
T ss_pred cEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECC---CCEECCCCEEcCCcccCCCcc--cCCCCCeEECCCCE
Confidence 34444455555554443 345666666666666552 356666666666665543211 11247899999999
Q ss_pred ECcCcEEe-ceEECCCcEECCccEECCCcEECCCc-------EECCCCeecCC
Q 024224 128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVRQN 172 (270)
Q Consensus 128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~~~ 172 (270)
||.+|.|. +++||++++||++|+|.+++.|.+.. .|.++++|.++
T Consensus 182 IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g 234 (269)
T TIGR00965 182 IGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSG 234 (269)
T ss_pred ECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecC
Confidence 99999774 69999999999999999999888754 24556666544
No 88
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.52 E-value=8.2e-14 Score=119.69 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=92.8
Q ss_pred ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEE
Q 024224 73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATL 151 (270)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I 151 (270)
++.++.|++++.|.+ ++.||++|.|+.++.|.. ++.||++|.|++++.+. +++||++|+||.++.|
T Consensus 83 vg~~~~I~~~a~I~g---~v~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I 149 (231)
T TIGR03532 83 KNINARIEPGAIIRD---QVIIGDNAVIMMGAVINI----------GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVL 149 (231)
T ss_pred cccccEECCCCEEeC---CeEECCCCEEecCcccCC----------CeEECCCCEEccccccCCCcEECCCcEEcCCcEE
Confidence 678888888888873 589999999999999964 78999999999999996 6999999999999999
Q ss_pred CC--------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224 152 LD--------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 152 ~~--------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~ 195 (270)
.+ ++.||++|+||++++|.+++.|++++++. ..+.+.+++++.
T Consensus 150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Ig-agsvV~~di~~~ 200 (231)
T TIGR03532 150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA-AGAIVTEDVPPN 200 (231)
T ss_pred ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEEC-CCCEEccccCCC
Confidence 74 68999999999999999998999888766 356666665544
No 89
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.52 E-value=3.7e-13 Score=108.87 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=85.8
Q ss_pred CCceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224 51 KAPAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV 126 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v 126 (270)
..+.|++++.|++++.|.+ .+.||++|.|+++|+|.+.. .++.||++|.|++++.+. .+.||++|
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-----------~~~Ig~~~ 85 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH-----------GCTIGRNA 85 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE-----------CCEECCCC
Confidence 3567888888888888876 58899999999999885321 357888888888888886 68899999
Q ss_pred EECcCcEEec-eEECCCcEECCccEECCCcEECCCcEE-CCCCeecC
Q 024224 127 TVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQ 171 (270)
Q Consensus 127 ~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~ 171 (270)
+|+.++.+.+ +.||++++|++++.|.++..|++++++ |.-+.+.+
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~ 132 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIR 132 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEec
Confidence 9999887755 888899888888888888888888776 33344433
No 90
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.52 E-value=3.6e-13 Score=112.69 Aligned_cols=144 Identities=15% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeE
Q 024224 51 KAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTT 121 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~ 121 (270)
....+++.+.|++++.|.+.+.|+.++.|+++|.|.... ....||++|.|++++.|....-. +......+.
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~ 87 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTV 87 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccE
Confidence 345788888888888888888888888888888887433 23467777777776666421100 000011233
Q ss_pred ECCCcEECcCcEE-----------------eceEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCC
Q 024224 122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPS 177 (270)
Q Consensus 122 Ig~~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~ 177 (270)
|++++.|+.++.+ .++.||++|.||+++.+. .++.||++++|++++.+.++++|++
T Consensus 88 Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~ 167 (193)
T cd03353 88 LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGD 167 (193)
T ss_pred ECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECC
Confidence 3333333332222 224555666666665553 2577899999999999988888888
Q ss_pred CcEEeecCceeccCCCHH
Q 024224 178 GEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 178 ~~iv~G~pa~~i~~~~~~ 195 (270)
++++.. -+.+.+++++.
T Consensus 168 ~~~i~~-gs~V~~~v~~~ 184 (193)
T cd03353 168 GATIAA-GSTITKDVPPG 184 (193)
T ss_pred CcEECC-CCEEccccCCC
Confidence 887764 45566666653
No 91
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.51 E-value=2e-13 Score=114.35 Aligned_cols=100 Identities=21% Similarity=0.318 Sum_probs=83.1
Q ss_pred EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-----eEECCCcEEC
Q 024224 72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-----CTVEDEAFVG 146 (270)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-----~~Ig~~~~Ig 146 (270)
.|+++++|++++.|.+ ++.||++|.|+++|+|.+.. +.++||++|.|+++|+|+. ++|+++++||
T Consensus 12 ~i~~~a~I~~~a~I~g---~V~IG~~~~I~~~avIrgd~-------~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig 81 (196)
T PRK13627 12 VVHPTAFVHPSAVLIG---DVIVGAGVYIGPLASLRGDY-------GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIG 81 (196)
T ss_pred ccCCCeEECCCCEEEC---ceEECCCCEECCCCEEecCC-------ccEEECCCCEECCCCEEeCCCCCCCEECCCCEEC
Confidence 4678888889998884 47999999999999998633 2588999999999999865 7899999999
Q ss_pred CccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 147 MGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 147 ~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
.++.+. +++||++|+||++++|..++.|++++++.
T Consensus 82 ~~a~i~-g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg 116 (196)
T PRK13627 82 HGAILH-GCVIGRDALVGMNSVIMDGAVIGEESIVA 116 (196)
T ss_pred CCcEEe-eEEECCCCEECcCCccCCCcEECCCCEEc
Confidence 998774 58888888888888888877777777655
No 92
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.51 E-value=4.6e-13 Score=108.03 Aligned_cols=110 Identities=24% Similarity=0.397 Sum_probs=85.6
Q ss_pred CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
...+++++.|++++.|.++ +.||++|.|+++++|.+.. .++.||++|.|+.++++. .+.||++++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~~~~ 85 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLH-----------GCTIGDNCL 85 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEe-----------eeEECCCCE
Confidence 3567888888888877754 6888888888888887432 147888888888888886 478888888
Q ss_pred ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEE-CCCCeecCC
Q 024224 128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMV-AAGSLVRQN 172 (270)
Q Consensus 128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI-gagsvV~~~ 172 (270)
|+.++.+. +++|+++|+|++++.|.+++.+++++++ +..+.+.++
T Consensus 86 Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~ 132 (153)
T cd04645 86 IGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRE 132 (153)
T ss_pred ECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhccc
Confidence 88888776 5888888888888888888888888877 566565555
No 93
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.50 E-value=6.4e-14 Score=131.58 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=113.8
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcC
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHS 131 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~ 131 (270)
.+++++.|++++.|.+++.||+++.|+++|.|.+.. .++.||++|.|++++.|.. ++.||++|.|+++
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~----------~~~ig~~~~Ig~~ 333 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRP----------GAELGEGAKVGNF 333 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEec----------cceecCCeEEcCc
Confidence 678889999999999999999999999999997443 2578899999998888864 3445555555544
Q ss_pred cE-----------------EeceEECCCcEECCccEE-------CCCcEECCCcEECCCCeecCCCccCCCcEEeecCce
Q 024224 132 AV-----------------LHGCTVEDEAFVGMGATL-------LDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAK 187 (270)
Q Consensus 132 ~~-----------------i~~~~Ig~~~~Ig~~a~I-------~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~ 187 (270)
+. +.++.||++|.||+++++ ..++.||++|+||++++|.++++|++++++ |..+.
T Consensus 334 ~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i-g~~s~ 412 (446)
T PRK14353 334 VEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI-ASGSV 412 (446)
T ss_pred eEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE-CCCCE
Confidence 43 345678888899988877 347999999999999999999999999988 45788
Q ss_pred eccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024224 188 FLRKLTDEEIAFISQSATNYSNLAQVHA 215 (270)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (270)
+.+++++.....-+.....+..+..+|+
T Consensus 413 v~~~v~~~~~~~g~~~~~~~~~~~~~~~ 440 (446)
T PRK14353 413 ITEDVPDDALALGRARQETKPGWAKKLR 440 (446)
T ss_pred ECccCCCCCEEEecCceEecccccccch
Confidence 8888887655443333334444444443
No 94
>PLN02472 uncharacterized protein
Probab=99.50 E-value=4.6e-13 Score=115.75 Aligned_cols=101 Identities=25% Similarity=0.306 Sum_probs=76.3
Q ss_pred CceeCCCCEECCCcEEecC---eEECCCCEEccCCEEEcCC-------CceEECCCCEECCCCEEEcCCCCCCCCccCeE
Q 024224 52 APAVDKDAFVAPSASIIGD---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTT 121 (270)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~ 121 (270)
.+.|++++.|++++++.++ +.||++|.|+++|+|.... ..+.||++|.|+++|+|. +++
T Consensus 77 ~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~-----------~~~ 145 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR-----------SCT 145 (246)
T ss_pred CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-----------CeE
Confidence 4667777788877777765 8888899999998886432 357888888888888885 688
Q ss_pred ECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 122 Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
||++|.||.+++| .+++||++|.|++++.|.++..|+++.++
T Consensus 146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW 188 (246)
T ss_pred EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 8899888888755 34777777777777777666666666555
No 95
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.48 E-value=2.2e-13 Score=133.94 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=85.8
Q ss_pred cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCc
Q 024224 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMG 148 (270)
Q Consensus 69 ~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~ 148 (270)
-+++||+|+.|++ ..+. ..+.++||+||.|+++|.|.+.. +.++ ...++.++||++|+||++
T Consensus 111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~~-----------~~~~-----~l~~g~i~IG~~~~IG~~ 172 (695)
T TIGR02353 111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGYR-----------AERG-----RLHTGPVTLGRDAFIGTR 172 (695)
T ss_pred cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEccc-----------CCCC-----ceeecCcEECCCcEECCC
Confidence 3678888888877 3332 34679999999999999997421 1111 123456899999999999
Q ss_pred cEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccC
Q 024224 149 ATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRK 191 (270)
Q Consensus 149 a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~ 191 (270)
|+|.+|++||++|+|+++|.|.++..||+++++.|+||+.+..
T Consensus 173 s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 173 STLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 9999999999999999999999977799999999999999865
No 96
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.48 E-value=6.1e-13 Score=125.54 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=39.8
Q ss_pred eEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHH
Q 024224 137 CTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~ 195 (270)
+.||++|.||+++++. .++.||++|+||+++.|.++++|+++++++. -+.+.+++++.
T Consensus 373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a-~s~v~~~v~~~ 437 (459)
T PRK14355 373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAA-GTTVTKDVPPD 437 (459)
T ss_pred CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECC-CCEEcccCCCC
Confidence 3555666666666542 2467888888888888888888888887764 35555565543
No 97
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.47 E-value=7.3e-13 Score=110.66 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=84.8
Q ss_pred eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-----ceEECCCcEE
Q 024224 71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-----GCTVEDEAFV 145 (270)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-----~~~Ig~~~~I 145 (270)
-.|+++++|++++.|.+ +++||++|.|+++|+|.+.. ++++||++|.|+++|+|+ +++|++++.|
T Consensus 9 p~i~~~~~I~~~a~I~G---~V~IG~~~~I~~~a~I~gd~-------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~I 78 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIG---DVILGKRCYVGPLASLRGDF-------GRIVLKEGANIQDNCVMHGFPGQDTVVEENGHV 78 (192)
T ss_pred CcCCCCcEECCCCEEEe---eEEECCCCEECCCcEEEccC-------CceEECCCCEECCCeEEeccCCCCCeECCCCEE
Confidence 34789999999999984 58999999999999998632 378999999999999994 4899999999
Q ss_pred CCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 146 GMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 146 g~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
+.++.|. +++|+++|.||+++.|..++.|++++++.
T Consensus 79 g~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vg 114 (192)
T TIGR02287 79 GHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVA 114 (192)
T ss_pred CCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEc
Confidence 9998875 58888888888888887777777776665
No 98
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.46 E-value=1.4e-12 Score=113.76 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=76.8
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCC----CCCCccCeEECCCcEE
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSN----LSGKVLPTTIGDNVTV 128 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~----~~~~~~~~~Ig~~v~I 128 (270)
+.++.+++|+|++.|.+ ..++.+++|+++++|.+ .+.||++|.||++|+|..+..- .....++++||++|+|
T Consensus 110 a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~---~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~I 185 (272)
T PRK11830 110 AVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDT---WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFI 185 (272)
T ss_pred eEECCCCEECCCcEEEE-EEECCCCEECCCcEEcc---ccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEE
Confidence 34556666666666653 44445555556666552 2455555555555555443210 0112347999999999
Q ss_pred CcCcEE-eceEECCCcEECCccEECCCcEECCCc-------EECCCCeecCC
Q 024224 129 GHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHG-------MVAAGSLVRQN 172 (270)
Q Consensus 129 ~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~-------vIgagsvV~~~ 172 (270)
|.++++ .++.||++|.||+++.|.+++.|++.+ .|-++++|.++
T Consensus 186 Ga~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g 237 (272)
T PRK11830 186 GARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPG 237 (272)
T ss_pred CCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecC
Confidence 999987 679999999999999999999999755 35677777644
No 99
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.46 E-value=6.9e-13 Score=124.60 Aligned_cols=142 Identities=10% Similarity=0.161 Sum_probs=94.2
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECC
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGD 124 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~ 124 (270)
.+++.+.|++++.|.+++.|+.++.|+++|.|.... .++.||++|.|++++.|....-. +......++||+
T Consensus 257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~ 336 (451)
T TIGR01173 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGA 336 (451)
T ss_pred EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECC
Confidence 466777777777777777777777777777776432 24667777777766666542211 000112344444
Q ss_pred CcEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcE
Q 024224 125 NVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEV 180 (270)
Q Consensus 125 ~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~i 180 (270)
+|.|++++.+ +++.||++|+||+++++.. ++.||++++||++++|.++++|+++++
T Consensus 337 ~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~ 416 (451)
T TIGR01173 337 GVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGAT 416 (451)
T ss_pred CcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCE
Confidence 4444444322 2367777778888777754 589999999999999999999999988
Q ss_pred EeecCceeccCCCHHH
Q 024224 181 WGGNPAKFLRKLTDEE 196 (270)
Q Consensus 181 v~G~pa~~i~~~~~~~ 196 (270)
+++ -+.+.+++++..
T Consensus 417 i~~-g~~v~~~v~~~~ 431 (451)
T TIGR01173 417 IAA-GSTVTKDVPEGA 431 (451)
T ss_pred Ecc-CCEECccCCCCc
Confidence 775 467777776643
No 100
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=6.9e-13 Score=124.67 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=85.3
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcC----------CC--CCCCCccCeE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA----------KS--NLSGKVLPTT 121 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~----------~~--~~~~~~~~~~ 121 (270)
.+++++.|++++.|.+++.|+.++.|+++|+|... +.|. +|.|+++|.|... .. ++......+.
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ 326 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPM---TRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTV 326 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCC---ceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccc
Confidence 56666666666666666677667777777776632 2221 1333333333210 00 0000112344
Q ss_pred ECCCcEECcCcEE-----------------eceEECCCcEECCccEEC-------CCcEECCCcEECCCCeecCCCccCC
Q 024224 122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVVVERHGMVAAGSLVRQNTRIPS 177 (270)
Q Consensus 122 Ig~~v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~-------~gv~Ig~~~vIgagsvV~~~~~I~~ 177 (270)
||++|.|++++.+ .+++||++|+||+++++. .+++||++++||+++.|.++++|++
T Consensus 327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~ 406 (448)
T PRK14357 327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGK 406 (448)
T ss_pred ccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECC
Confidence 5555555544332 346788888888888764 3589999999999999999999999
Q ss_pred CcEEeecCceeccCCCHHH
Q 024224 178 GEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 178 ~~iv~G~pa~~i~~~~~~~ 196 (270)
++++++ -+.+.+++++..
T Consensus 407 ~~~i~a-g~~v~~~v~~~~ 424 (448)
T PRK14357 407 GALIGA-GSVITEDVPPYS 424 (448)
T ss_pred CCEEcC-CCEECCcCCCCc
Confidence 988775 577777776654
No 101
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.44 E-value=1.7e-12 Score=123.26 Aligned_cols=63 Identities=6% Similarity=0.178 Sum_probs=49.0
Q ss_pred EEeceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224 133 VLHGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
.++++.||++|+||+++++.. ++.||+++.||.++.+.++++|+++++++. -+.+.+++++..
T Consensus 371 ~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~iga-gs~v~~~v~~~~ 440 (482)
T PRK14352 371 YVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGA-GTVIREDVPPGA 440 (482)
T ss_pred eecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECC-CCEEcCCCCCCc
Confidence 344578889999999988863 489999999999999999999999986653 455666665543
No 102
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=123.44 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=88.0
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECCCc
Q 024224 56 DKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGDNV 126 (270)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~~v 126 (270)
.+.+.|++++.|.+++.|..++.|+++|.|.... .+.+||++|.|++++.|.+..-. +......+.||+++
T Consensus 268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~ 347 (481)
T PRK14358 268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV 347 (481)
T ss_pred cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence 4455555555555555555555555555554321 23445555555555544321100 01112346666666
Q ss_pred EECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 127 TVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 127 ~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
.|+.++.+ .+++||++|.||.++++.. ++.||++++||+++.|.++++|+++++++
T Consensus 348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence 66664432 4588999999999998853 57999999999999999999999999886
Q ss_pred ecCceeccCCCHHHH
Q 024224 183 GNPAKFLRKLTDEEI 197 (270)
Q Consensus 183 G~pa~~i~~~~~~~~ 197 (270)
+ -+.+.+++++...
T Consensus 428 ~-gs~v~~~v~~~~~ 441 (481)
T PRK14358 428 A-GSAVHDDVPEGAM 441 (481)
T ss_pred C-CCEEecccCCCCE
Confidence 4 4566677766543
No 103
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.42 E-value=2.5e-12 Score=106.48 Aligned_cols=61 Identities=30% Similarity=0.549 Sum_probs=27.9
Q ss_pred eEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcE
Q 024224 120 TTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEV 180 (270)
Q Consensus 120 ~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~i 180 (270)
++||++|.|++++.|. ++.||++|+|+.++.+.++++||++|+|++++.|.+++.|+++++
T Consensus 115 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~ 176 (197)
T cd03360 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAI 176 (197)
T ss_pred CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCE
Confidence 3344444444444432 244444444444444444444444444444444444444444443
No 104
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.42 E-value=3.3e-12 Score=107.82 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=56.3
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+++++.|++++.|. ++.||+++.|+++|+|. .++||++|.|+.++.+. .+.||++|.|++++.+
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~----~s~IG~~s~I~~~~~i~-----------~~~IG~~~~I~~~v~I 68 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR----EVALGDYSYVMRDCDII-----------YTTIGKFCSIAAMVRI 68 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe----CCEECCCCEECCCcEEe-----------eeEECCCCEECCCCEE
Confidence 56777888888885 57899999999999997 36899999999999997 5889999999999877
Q ss_pred ec
Q 024224 135 HG 136 (270)
Q Consensus 135 ~~ 136 (270)
..
T Consensus 69 ~~ 70 (204)
T TIGR03308 69 NA 70 (204)
T ss_pred CC
Confidence 53
No 105
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.39 E-value=6.3e-12 Score=104.99 Aligned_cols=90 Identities=29% Similarity=0.512 Sum_probs=55.3
Q ss_pred EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 93 SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 93 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
.||++|.|+++++|.. +++||++|.|++++.+. ++.||++++|+.++.+.++++||++|+|+++++|.+
T Consensus 101 ~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 170 (201)
T TIGR03570 101 SIGEGTVIMAGAVINP----------DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ 170 (201)
T ss_pred EECCCCEECCCCEECC----------CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence 4455555555555542 45566666666666554 366777777777777766677777777777777766
Q ss_pred CCccCCCcEEeecCceeccCCC
Q 024224 172 NTRIPSGEVWGGNPAKFLRKLT 193 (270)
Q Consensus 172 ~~~I~~~~iv~G~pa~~i~~~~ 193 (270)
++.|++++++ |.++.+.++++
T Consensus 171 ~~~i~~~~~i-~~~~~v~~~~~ 191 (201)
T TIGR03570 171 GVTIGAGAIV-GAGAVVTKDIP 191 (201)
T ss_pred CCEECCCCEE-CCCCEECCcCC
Confidence 6666666654 33455555444
No 106
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.37 E-value=2.7e-12 Score=126.35 Aligned_cols=108 Identities=27% Similarity=0.430 Sum_probs=85.7
Q ss_pred ECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEEC
Q 024224 61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVE 140 (270)
Q Consensus 61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig 140 (270)
+.+.....-+++||++|.|.....+.. ..++||++|.|+++|.|.++.. .+.+. .+.+++||
T Consensus 588 ~~~~~lr~lGa~IG~~v~i~~~~~~~~--dlv~IGd~~~I~~~~~i~~h~~-----------~~~~~-----~~~~v~IG 649 (695)
T TIGR02353 588 FLPAILRLLGVKIGRGVYIDGTDLTER--DLVTIGDDSTLNEGSVIQTHLF-----------EDRVM-----KSDTVTIG 649 (695)
T ss_pred HHHHHHHHCCCEECCCeEECCeeccCC--CCeEECCCCEECCCCEEEeccc-----------ccccc-----ccCCeEEC
Confidence 333444455788888888877665543 3589999999999999974211 11111 34569999
Q ss_pred CCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCc
Q 024224 141 DEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPA 186 (270)
Q Consensus 141 ~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa 186 (270)
++|+||++|+|.++++||++|+|+++|+|.++..+|+++++.|+||
T Consensus 650 ~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 650 DGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence 9999999999999999999999999999999888999999999996
No 107
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.37 E-value=7.9e-12 Score=117.81 Aligned_cols=59 Identities=7% Similarity=0.236 Sum_probs=43.4
Q ss_pred eEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCCCHHH
Q 024224 137 CTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEE 196 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~~~~~ 196 (270)
++||++|.||+++.+.. +++||+++++|+++.|.++++|+++++++. -+.+.+++++..
T Consensus 369 ~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~-~~~v~~~~~~~~ 434 (458)
T PRK14354 369 AEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAA-GSTITKDVPEDA 434 (458)
T ss_pred cccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECC-CCEECCCCCCCC
Confidence 34555566666665532 578899999999999999999999987764 566777777644
No 108
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.37 E-value=5.9e-12 Score=99.37 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=75.7
Q ss_pred ccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 48 IFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
.+...+.|++++.|.+.+.+..++.||++|.|.. +|. ..++||++|.|++++.|...... +...++.||++|+
T Consensus 9 ~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig---~~a~Ighd~~IG~~~~I~~~l~G--~~~~pV~IG~~~~ 81 (147)
T cd04649 9 RVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RIS---SGVIVGKGSDVGGGASIMGTLSG--GGNNVISIGKRCL 81 (147)
T ss_pred EECCCCEECCCcEECCCCEEccCCEECCCeEECC--ccc---CCEEECCCCEECCCCEEEEECCC--CcccCEEECCCCE
Confidence 3456667777777777777777777777777752 222 23567778888888888732111 1234599999999
Q ss_pred ECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224 128 VGHSAVLHGCTVEDEAFVGMGATLLDGVVVE 158 (270)
Q Consensus 128 I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig 158 (270)
||.++++ ++.||++|.||++++|.+++.|-
T Consensus 82 IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 82 LGANSGI-GISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred ECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence 9999999 89999999999999999887763
No 109
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=7.7e-12 Score=117.94 Aligned_cols=140 Identities=11% Similarity=0.179 Sum_probs=89.3
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC--CceEECCCCEECCCCEEEcCCCC-------CCCCccCeEECCC
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKSN-------LSGKVLPTTIGDN 125 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~~~~~Ig~~ 125 (270)
+...+.+++++.|.+++.|+.++.|++++.|.... .++.||++|.|++++.|....-. .......+.|+++
T Consensus 262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~ 341 (456)
T PRK09451 262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG 341 (456)
T ss_pred ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC
Confidence 34455677777777777777777788888776432 24556666666666666432110 0001122333333
Q ss_pred cEECcCcEE-----------------eceEECCCcEECCccEECC-------CcEECCCcEECCCCeecCCCccCCCcEE
Q 024224 126 VTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVVVERHGMVAAGSLVRQNTRIPSGEVW 181 (270)
Q Consensus 126 v~I~~~~~i-----------------~~~~Ig~~~~Ig~~a~I~~-------gv~Ig~~~vIgagsvV~~~~~I~~~~iv 181 (270)
+.|++++.+ +++.||++|.||+++++.. +++||++|+||++++|.++++|++++++
T Consensus 342 ~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 421 (456)
T PRK09451 342 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421 (456)
T ss_pred ceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence 333333222 2357888888888887742 4789999999999999999999999887
Q ss_pred eecCceeccCCCHH
Q 024224 182 GGNPAKFLRKLTDE 195 (270)
Q Consensus 182 ~G~pa~~i~~~~~~ 195 (270)
++ -+.+.+++++.
T Consensus 422 ~~-gs~v~~~v~~~ 434 (456)
T PRK09451 422 GA-GTTVTRDVAEN 434 (456)
T ss_pred CC-CCEEccccCCC
Confidence 75 56666776654
No 110
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=2.8e-11 Score=90.80 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=59.7
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
.+.|++++.|.+++.|.+ ++.||++|.|++++.|.. +++||++|.|+. .+..+.|++++.++.++
T Consensus 11 ~v~ig~~~~I~~~~~i~g---~v~IG~~~~Ig~~~~I~~----------~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~ 75 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEG---PVYIGPGSRVKMGARIYG----------NTTIGPTCKIGG--EVEDSIIEGYSNKQHDG 75 (101)
T ss_pred CEEECCCCEECCCCEEeC---CCEECCCCEECCCCEEeC----------cCEECCCCEECC--EECccEEcCCCEecCcC
Confidence 577777777777777763 467888888888877764 677777777754 45667777777777777
Q ss_pred EECCCcEECCCcEECCCCee
Q 024224 150 TLLDGVVVERHGMVAAGSLV 169 (270)
Q Consensus 150 ~I~~gv~Ig~~~vIgagsvV 169 (270)
.|. +++||+++.|++++..
T Consensus 76 ~lg-~siIg~~v~ig~~~~~ 94 (101)
T cd05635 76 FLG-HSYLGSWCNLGAGTNN 94 (101)
T ss_pred EEe-eeEECCCCEECCCcee
Confidence 764 5777777777776554
No 111
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.30 E-value=3.3e-11 Score=85.77 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=55.8
Q ss_pred ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224 73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (270)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~ 152 (270)
||+++.|++++.|. +..||++|.|++++.|. ++.|++++.|++++.+.++.|++++.|+.++.+.
T Consensus 2 ig~~~~I~~~~~i~----~s~ig~~~~ig~~~~i~-----------~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 2 IGRGTSIGEGTTIK----NSVIGRNCKIGKNVVID-----------NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred ccCCCEECCCCEEe----ccEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 56666666666665 24677888888888875 5678888888888877777777777777777776
Q ss_pred CCcEECCCcEEC
Q 024224 153 DGVVVERHGMVA 164 (270)
Q Consensus 153 ~gv~Ig~~~vIg 164 (270)
+++.|++++.||
T Consensus 67 ~~~~v~~~~~ig 78 (79)
T cd05787 67 PGSLISFGVVIG 78 (79)
T ss_pred CCCEEeCCcEeC
Confidence 666666666665
No 112
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.29 E-value=2.3e-11 Score=112.05 Aligned_cols=103 Identities=20% Similarity=0.396 Sum_probs=75.8
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+..++.+.+.+.|++++.| .++.|+++|.|.+...+..||++|.|+++|.|. +++|+++|.|++++.+
T Consensus 273 ~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-----------~svi~~~~~i~~~~~i 340 (380)
T PRK05293 273 IYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-----------DSVIMPGAKIGENVVI 340 (380)
T ss_pred eecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------CCEEeCCCEECCCeEE
Confidence 4344445555555555555 356666666665433467899999999999997 6889999999999999
Q ss_pred eceEECCCcEECCccEECCC----cEECCCcEECCCCee
Q 024224 135 HGCTVEDEAFVGMGATLLDG----VVVERHGMVAAGSLV 169 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a~I~~g----v~Ig~~~vIgagsvV 169 (270)
.+++|++++.|+.++.+.++ ..||+++.|..++++
T Consensus 341 ~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 341 ERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred eEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 99999999999999888765 556666666666554
No 113
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.29 E-value=4.5e-11 Score=85.90 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=52.3
Q ss_pred ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224 73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (270)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~ 152 (270)
||+++.|++++.|. + ..||++|.|++++.|. +++|++++.|++++.+.++.|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~-----------~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~ 66 (81)
T cd04652 2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT-----------NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK 66 (81)
T ss_pred ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence 45556666666554 1 4667777777777775 4667777777777777777777777777777773
Q ss_pred CCcEECCCcEECCC
Q 024224 153 DGVVVERHGMVAAG 166 (270)
Q Consensus 153 ~gv~Ig~~~vIgag 166 (270)
++.|++++.|+++
T Consensus 67 -~~ii~~~~~i~~~ 79 (81)
T cd04652 67 -DCLVGSGYRVEAG 79 (81)
T ss_pred -cCEECCCcEeCCC
Confidence 4666666666554
No 114
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=113.91 Aligned_cols=82 Identities=30% Similarity=0.443 Sum_probs=51.2
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
+.+++++.|.+++.+.+++.||++|.|+++|.|. +.+||++|.|++++.|. +++||++|.|++++
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~----~~~i~~~~~I~~~~~i~-----------~~~ig~~~~Ig~~~ 334 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR----DAVVSSGATIHSFSHLE-----------GAEVGDGCSVGPYA 334 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEE----eeEECCCCEEeeeEEEc-----------ccceecccEECCce
Confidence 3444444444444555567777778887777776 25788888888877775 45666666666666
Q ss_pred EEe-ceEECCCcEECCcc
Q 024224 133 VLH-GCTVEDEAFVGMGA 149 (270)
Q Consensus 133 ~i~-~~~Ig~~~~Ig~~a 149 (270)
.+. +++||++|.||.++
T Consensus 335 ~i~~~~~ig~~~~ig~~~ 352 (456)
T PRK14356 335 RLRPGAVLEEGARVGNFV 352 (456)
T ss_pred EECCCCEECCCCEecCCc
Confidence 554 35555555555543
No 115
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=4.7e-11 Score=85.18 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=56.9
Q ss_pred ECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEEC
Q 024224 73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (270)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~ 152 (270)
||+++.|++++.|.. ..||++|.|++++.|. ++.|++++.|++++.+.+++|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~~----s~ig~~~~Ig~~~~i~-----------~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~ 66 (79)
T cd03356 2 IGESTVIGENAIIKN----SVIGDNVRIGDGVTIT-----------NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV 66 (79)
T ss_pred ccCCcEECCCCEEeC----CEECCCCEECCCCEEe-----------CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence 556666666666651 4677788888888776 5778888888888888888888888888888777
Q ss_pred CCcEECCCcEEC
Q 024224 153 DGVVVERHGMVA 164 (270)
Q Consensus 153 ~gv~Ig~~~vIg 164 (270)
.++.+++++.|+
T Consensus 67 ~~~~ig~~~~i~ 78 (79)
T cd03356 67 NLCIIGDDVVVE 78 (79)
T ss_pred CCeEECCCeEEC
Confidence 767777776664
No 116
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.28 E-value=2.6e-11 Score=98.76 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=66.0
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+..++.|++.+.|++++.|+.+ .+++|. ..++||++|.|+++|+|...... ...+.++||++|+|+.++++
T Consensus 58 ~~~~~~I~~~~~Ig~~~~i~~~----~g~~Ig---~~~~IG~~~~I~~~v~ig~~~~~--~~~~~~~Ig~~v~Ig~~a~I 128 (162)
T TIGR01172 58 VLTGVDIHPGARIGRGVFIDHG----TGVVIG---ETAVIGDDVTIYHGVTLGGTGKE--KGKRHPTVGEGVMIGAGAKV 128 (162)
T ss_pred eeeCeEeCCCCEECCCeEECCC----CeEEEC---CCCEECCCCEEcCCCEECCCccc--cCCcCCEECCCcEEcCCCEE
Confidence 3444555555554444444432 123343 12467788888888888754211 01345799999999999977
Q ss_pred ec-eEECCCcEECCccEECCCcEECCCcEEC
Q 024224 135 HG-CTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 135 ~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
.+ ++||++|+||++|+|.++ |++++++.
T Consensus 129 ~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~ 157 (162)
T TIGR01172 129 LGNIEVGENAKIGANSVVLKD--VPPGATVV 157 (162)
T ss_pred ECCcEECCCCEECCCCEECCC--CCCCCEEE
Confidence 55 999999999999999986 57776653
No 117
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=1.4e-10 Score=86.93 Aligned_cols=82 Identities=26% Similarity=0.354 Sum_probs=37.1
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
.+++++.|.+++.+.+++.||+++.|++++.|.+ ++.||++|.|+. .|. .+.|++++.+.+++.
T Consensus 13 ~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~---~v~IG~~~~Ig~--~i~-----------~svi~~~~~i~~~~~ 76 (101)
T cd05635 13 YIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYG---NTTIGPTCKIGG--EVE-----------DSIIEGYSNKQHDGF 76 (101)
T ss_pred EECCCCEECCCCEEeCCCEECCCCEECCCCEEeC---cCEECCCCEECC--EEC-----------ccEEcCCCEecCcCE
Confidence 3444444544444444455555555555554442 234444444432 121 344444444444444
Q ss_pred EeceEECCCcEECCccEE
Q 024224 134 LHGCTVEDEAFVGMGATL 151 (270)
Q Consensus 134 i~~~~Ig~~~~Ig~~a~I 151 (270)
|..++||+++.||+++..
T Consensus 77 lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 77 LGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred EeeeEECCCCEECCCcee
Confidence 444444444444444433
No 118
>PRK10502 putative acyl transferase; Provisional
Probab=99.25 E-value=7.6e-11 Score=97.85 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=35.7
Q ss_pred eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+.||+++.|++++.|.. ..++.||++|.|++++.|... ..++||++|.|++++.|
T Consensus 52 a~iG~~~~I~~~a~i~~-~~~~~IG~~~~Ig~~~~I~~~--------~~v~IG~~~~I~~~~~I 106 (182)
T PRK10502 52 AKIGKGVVIRPSVRITY-PWKLTIGDYAWIGDDVWLYNL--------GEITIGAHCVISQKSYL 106 (182)
T ss_pred cccCCCcEEcCCEEEec-CCeEEECCCeEECCCceeccc--------CceEECCCcEECCCeEE
Confidence 55677777777777663 245777777777777777642 24667777766666655
No 119
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.24 E-value=5.5e-11 Score=101.80 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=70.0
Q ss_pred eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc-EEeceEECCCcEECCcc
Q 024224 71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA-VLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~-~i~~~~Ig~~~~Ig~~a 149 (270)
+.++++|.|.-++++. +.+.||+||.|+-++.|.+.-. .....++.||++|.||.++ .+.|+.+|++|.|++|+
T Consensus 139 A~~~~gtMVd~~as~G---~~a~VGkn~higgGa~I~GVLe--p~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 139 AGTGEGTMVDGRASVG---SCAQVGKNSHIGGGASIGGVLE--PLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred cccCcceEEeeeeeee---ccEEECCCcccCCcceEeEEec--CCCCCCeEECCccEeccccceEeeeEeCCCcEEecce
Confidence 3344444444444433 2478888888888888876222 2235699999999999999 88999999999999999
Q ss_pred EECCCcEECCCc--EECCCCeecCCCccC
Q 024224 150 TLLDGVVVERHG--MVAAGSLVRQNTRIP 176 (270)
Q Consensus 150 ~I~~gv~Ig~~~--vIgagsvV~~~~~I~ 176 (270)
+|.+++.|..-+ -+ ++++|..+ .+|
T Consensus 214 ~I~~~tki~~~~~g~~-~~svv~~~-~lp 240 (271)
T COG2171 214 FITQDTKIYDRVAGRV-AGSVVVAG-TLP 240 (271)
T ss_pred EEeCCcceEEeecccc-ccceEeec-ccC
Confidence 999999876532 23 55655554 355
No 120
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.24 E-value=1.5e-10 Score=101.56 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=86.8
Q ss_pred hhhhccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCE-EEcC------CCceEECCCCEECCCCEEEcCCCCCCCC
Q 024224 44 TLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCV-LRGD------VNSISVGSGTNIQDNSLVHVAKSNLSGK 116 (270)
Q Consensus 44 ~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~-I~~~------~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 116 (270)
.....+..++.|++++.|.+++.|++++.|..+++|+.++. +... ...++||++|.||.+|.|...-.. +.
T Consensus 170 m~dyVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsG--g~ 247 (341)
T TIGR03536 170 MTDYVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSG--GG 247 (341)
T ss_pred hhheEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeC--CC
Confidence 34556677888999999998888888888888888888877 3211 135789999999999999542110 01
Q ss_pred ccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224 117 VLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE 158 (270)
Q Consensus 117 ~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig 158 (270)
...+.||++|+||.++.+ ++.||++|+||+|+.|.+++.|-
T Consensus 248 ~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 248 NIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred ceeEEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence 123999999999999999 99999999999999999988764
No 121
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.23 E-value=8.4e-11 Score=83.06 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=58.8
Q ss_pred EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEE
Q 024224 72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 151 (270)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I 151 (270)
.||+++.|++++.|.+ ++.||++|.|++++.|...... . ...++.||++|+++.++++
T Consensus 2 ~ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~i~~~~~~-----------~--------~~~~~~ig~~~~v~~~~~i 59 (78)
T cd00208 2 FIGEGVKIHPKAVIRG---PVVIGDNVNIGPGAVIGAATGP-----------N--------EKNPTIIGDNVEIGANAVI 59 (78)
T ss_pred EECCCeEECCCCEEeC---cEEECCCCEECCCCEEEeccCC-----------C--------ccCCcEECCCcEECCCCEE
Confidence 5777888888888763 5788888888888888753221 0 2344788889999998999
Q ss_pred CCCcEECCCcEECCCCeec
Q 024224 152 LDGVVVERHGMVAAGSLVR 170 (270)
Q Consensus 152 ~~gv~Ig~~~vIgagsvV~ 170 (270)
.+++.||++++|++++.|.
T Consensus 60 ~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 60 HGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred eCCCEECCCCEECcCcEeC
Confidence 8889999999998888763
No 122
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=1.6e-10 Score=83.09 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=69.4
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
|++++.|++++.+. ++.||++|.|++++.|. +..|+++|.|++++.|. ++.+++++.|++++.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~----~s~i~~~~~ig~~~~l~-----------~svi~~~~~i~~~~~v 65 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT----NCVIMDNVTIEDGCTLE-----------NCIIGNGAVIGEKCKL 65 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEe----CcEEeCCCEECCCCEEe-----------ccEEeCCCEECCCCEE
Confidence 67888888888886 68899999999999997 25899999999999996 6899999999999999
Q ss_pred eceEECCCcEECCcc
Q 024224 135 HGCTVEDEAFVGMGA 149 (270)
Q Consensus 135 ~~~~Ig~~~~Ig~~a 149 (270)
.++.||+++.|++++
T Consensus 66 ~~~ii~~~~~i~~~~ 80 (81)
T cd04652 66 KDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCEECCCcEeCCCC
Confidence 988888888888764
No 123
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.21 E-value=1.5e-10 Score=88.89 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224 74 GRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG 136 (270)
Q Consensus 74 G~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~ 136 (270)
|+++.|++++.|.+ ++.||++|.|++++.|.. .++||++|.|++++.+.+
T Consensus 2 g~~~~I~~~~~i~~---~~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~I~~~~~i~~ 51 (119)
T cd03358 2 GDNCIIGTNVFIEN---DVKIGDNVKIQSNVSIYE----------GVTIEDDVFIGPNVVFTN 51 (119)
T ss_pred CCCCEECCCcEECC---CcEECCCcEECCCcEEeC----------CeEECCCcEEcCCeEEec
Confidence 33444444444432 234444555555544431 344555555554444433
No 124
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.21 E-value=1.3e-10 Score=95.25 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=71.8
Q ss_pred CCCceeCCCCEECCCcEEe--cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 50 DKAPAVDKDAFVAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
+....||++++|++++.+. ++++||++|.|++++.|......+...+.. .+..+ .++++||++|+
T Consensus 60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~---~~~~~----------~~~v~IG~~~~ 126 (169)
T cd03357 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERN---RGLEY----------AKPITIGDNVW 126 (169)
T ss_pred CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHcc---cccee----------cCCcEeCCCEE
Confidence 4466788888888888775 568888888888888887432222111111 12222 35899999999
Q ss_pred ECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
|+.+++| .+++||++|+||++|+|.++ |.+++++.
T Consensus 127 Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~ 162 (169)
T cd03357 127 IGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAA 162 (169)
T ss_pred ECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence 9999976 46999999999999999884 66776653
No 125
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=7.5e-11 Score=106.81 Aligned_cols=92 Identities=29% Similarity=0.443 Sum_probs=77.9
Q ss_pred EECCC-cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceE
Q 024224 60 FVAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCT 138 (270)
Q Consensus 60 ~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~ 138 (270)
.+.|. ..|.+++.||.+|.|.++++|. +++.||++|.||++|.|. ++.||+++.|..++.+.+++
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~---G~t~ig~~v~iGpg~~i~-----------ds~I~~~a~I~~~S~ie~s~ 322 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILE---GNTVIGDNVVIGPGSVIK-----------DSVIGDNAVIKAYSVIEGST 322 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEe---eeEEECCceEECCCcEEE-----------eeEEcCCCEEEecceeeccE
Confidence 44444 4667899999999999999999 468999999999999998 78899999999999998888
Q ss_pred ECCCcEECCccEECCCcEECCCcEECC
Q 024224 139 VEDEAFVGMGATLLDGVVVERHGMVAA 165 (270)
Q Consensus 139 Ig~~~~Ig~~a~I~~gv~Ig~~~vIga 165 (270)
||++|.||+-+.+.|++.+++++.||.
T Consensus 323 vg~~~~VGPfA~LRPg~~L~~~~hIGN 349 (460)
T COG1207 323 VGEGATVGPFARLRPGAVLGADVHIGN 349 (460)
T ss_pred ecCCcccCCccccCCcCcccCCCeEee
Confidence 888888888888888777777666653
No 126
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.19 E-value=1.7e-10 Score=100.83 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=68.7
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
.+..++.|+|.+.|+.++.|+.++ +.+|. ..+.||++|.|..+++|.+..+.. .....+||++|+||.+++
T Consensus 137 ~~~~gidI~~~a~IG~g~~I~h~~----givIG---~~a~IGdnv~I~~~VtiGg~~~~~--~~~~p~IGd~V~IGaga~ 207 (273)
T PRK11132 137 SVAFQVDIHPAAKIGRGIMLDHAT----GIVIG---ETAVIENDVSILQSVTLGGTGKTS--GDRHPKIREGVMIGAGAK 207 (273)
T ss_pred eeeeeeEecCcceECCCeEEcCCC----CeEEC---CCCEECCCCEEcCCcEEecCcccC--CCcCCEECCCcEEcCCCE
Confidence 344455555555555444444432 33444 246889999999999997532210 113579999999999997
Q ss_pred Ee-ceEECCCcEECCccEECCCcEECCCcEE
Q 024224 134 LH-GCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 134 i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
|. +++||++|.||+|++|..+ |.+++++
T Consensus 208 Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v 236 (273)
T PRK11132 208 ILGNIEVGRGAKIGAGSVVLQP--VPPHTTA 236 (273)
T ss_pred EcCCCEECCCCEECCCCEECcc--cCCCcEE
Confidence 65 5999999999999999875 7777666
No 127
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.9e-11 Score=111.56 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=57.0
Q ss_pred cCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCc
Q 024224 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMG 148 (270)
Q Consensus 69 ~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~ 148 (270)
.+++-++.+++.+.+.+. .++.||.++.||.++.|. +++||.+|.||.++.|.++.|+++|+||.|
T Consensus 314 ~~IYk~~dv~~~~~~~v~---~~~~ig~gT~Ig~g~~I~-----------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdn 379 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVG---ANVVIGAGTKIGSGSKIS-----------NSVIGANCRIGSNVRIKNSFIWNNVTIGDN 379 (673)
T ss_pred cccccCccceehhhcccc---ceEEecccccccCCCeee-----------cceecCCCEecCceEEeeeeeecCcEECCC
Confidence 356667777777777766 357889999999999998 799999999999999998888888888888
Q ss_pred cEE
Q 024224 149 ATL 151 (270)
Q Consensus 149 a~I 151 (270)
|.|
T Consensus 380 c~I 382 (673)
T KOG1461|consen 380 CRI 382 (673)
T ss_pred ceE
Confidence 665
No 128
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.18 E-value=3.5e-10 Score=85.37 Aligned_cols=98 Identities=23% Similarity=0.384 Sum_probs=73.6
Q ss_pred ceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECc
Q 024224 53 PAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGH 130 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~ 130 (270)
..|+++++|++++.|.+ ++.||++|.|++++.|... ....++.++.+..... ..+++||++|+|+.
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-~~~~~~~~~~~~~~~~-----------~~~~~Ig~~~~ig~ 69 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-NHDIDDPERPIEQGVT-----------SAPIVIGDDVWIGA 69 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-CCCCCccccccccccc-----------cCCeEECCCCEECC
Confidence 46899999999999988 8999999999999999843 2222222222211211 24789999999999
Q ss_pred CcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 131 SAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 131 ~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
++.+ .++.||++|+|++++.|.. .++++++++
T Consensus 70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~ 102 (109)
T cd04647 70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA 102 (109)
T ss_pred CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence 9987 5699999999999999973 567776663
No 129
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.17 E-value=5.7e-10 Score=93.40 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=55.8
Q ss_pred EECCCcEE--ecCeEECCCCEEccCCEEEc-CCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224 60 FVAPSASI--IGDVQVGRGSSIWYGCVLRG-DVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG 136 (270)
Q Consensus 60 ~I~~~~~i--~~~v~IG~~~~I~~~~~I~~-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~ 136 (270)
+|.|...+ +.++.+|+++.++.++++.. +.+.+.||++|.|++++.|... ..++||++|.|++++.|.+
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~--------~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACI--------ESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccC--------ceEEECCCCEECCCeEEEC
Confidence 56665544 35688999999999999953 3467999999999999999742 3789999999999998864
No 130
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.17 E-value=2.4e-10 Score=93.67 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=66.5
Q ss_pred CCceeCCCCEECCCcEEec--CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEE
Q 024224 51 KAPAVDKDAFVAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTV 128 (270)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I 128 (270)
.+..|++++.|+++..|.- ++.||+.+.| |++|.|..+++|.+...+. + ...-+||++|.|
T Consensus 66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~I---------------Gddv~I~~gVTLGgtg~~~-g-~RhPtIg~~V~I 128 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVI---------------GDDVTIYHGVTLGGTGKES-G-KRHPTIGNGVYI 128 (194)
T ss_pred cceeeCCCCeECCceEEcCCceEEEcceeEE---------------CCCeEEEcceEecCCCCcC-C-CCCCccCCCeEE
Confidence 3557899999999888853 6889887755 5555566777776533221 1 235679999999
Q ss_pred CcCc-EEeceEECCCcEECCccEECCCc
Q 024224 129 GHSA-VLHGCTVEDEAFVGMGATLLDGV 155 (270)
Q Consensus 129 ~~~~-~i~~~~Ig~~~~Ig~~a~I~~gv 155 (270)
|.++ +++++.||+++.||+||+|.+.+
T Consensus 129 GagAkILG~I~IGd~akIGA~sVVlkdV 156 (194)
T COG1045 129 GAGAKILGNIEIGDNAKIGAGSVVLKDV 156 (194)
T ss_pred CCCCEEEcceEECCCCEECCCceEccCC
Confidence 9999 55679999999999999999863
No 131
>PRK10191 putative acyl transferase; Provisional
Probab=99.16 E-value=2.8e-10 Score=90.84 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=42.7
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCC
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG 154 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~g 154 (270)
+.||++|.|+++|+|...... ....+.||++|+|+.++.+.+ +.||++++||++++|.++
T Consensus 68 ~~IGd~~~I~h~v~IG~~~~~---~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 68 VVAGDDFTIRHGVTIGNRGAD---NMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEECCCCEECCCCEECCCCcC---CCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 345555555555555432110 123568999999999998765 999999999999999875
No 132
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.15 E-value=3.4e-10 Score=80.53 Aligned_cols=74 Identities=22% Similarity=0.433 Sum_probs=59.6
Q ss_pred ECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCCC
Q 024224 94 VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNT 173 (270)
Q Consensus 94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~ 173 (270)
||++|.|++++.|. ++.|+++|.|++++.+.++.|++++.|++++.|. ++.|++++.|+.++.+..++
T Consensus 2 ig~~~~I~~~~~i~-----------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 69 (79)
T cd05787 2 IGRGTSIGEGTTIK-----------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGS 69 (79)
T ss_pred ccCCCEECCCCEEe-----------ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCC
Confidence 68899999999986 5789999999999999999999999999988885 57777777777776666655
Q ss_pred ccCCCc
Q 024224 174 RIPSGE 179 (270)
Q Consensus 174 ~I~~~~ 179 (270)
.+.+++
T Consensus 70 ~v~~~~ 75 (79)
T cd05787 70 LISFGV 75 (79)
T ss_pred EEeCCc
Confidence 555444
No 133
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.15 E-value=3.1e-10 Score=94.13 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=65.2
Q ss_pred CCCceeCCCCEECCCcEEecC--eEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 50 DKAPAVDKDAFVAPSASIIGD--VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~~--v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
+.+..||++++|.+++.|... ++||++|.|++++.|.... ...+......+..+ .+++.||++|+
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~---h~~~~~~~~~~~~~----------~~~v~IGd~v~ 137 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTAT---HPLDPVARNSGAEL----------GKPVTIGNNVW 137 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCC---CCCChHHcccccee----------cCCeEECCCcE
Confidence 455566666666666666543 5777777777777776321 11111111122222 24788999999
Q ss_pred ECcCcEEe-ceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 128 VGHSAVLH-GCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 128 I~~~~~i~-~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
||.++++. +++||++|+||++++|... |+++++++
T Consensus 138 IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~ 173 (183)
T PRK10092 138 IGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVG 173 (183)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEE
Confidence 99999775 5999999999999999875 56776663
No 134
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.4e-10 Score=102.80 Aligned_cols=96 Identities=23% Similarity=0.394 Sum_probs=80.3
Q ss_pred cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224 65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF 144 (270)
Q Consensus 65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~ 144 (270)
+.+.+++.||.+|.|++++.|.+ .++||++|.|++++.|. ++.|.++|.|++++.+.+++||++|.
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~---~~~ig~~~~I~~~~~i~-----------~Sii~~~~~i~~~~~i~~sIi~~~~~ 321 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGP---YTVIGEGVTIGNGVEIK-----------NSIIMDNVVIGHGSYIGDSIIGENCK 321 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECC---CcEECCCCEECCCcEEE-----------eeEEEcCCEECCCCEEeeeEEcCCcE
Confidence 78888999999999999999985 46999999999999998 79999999999999999999999999
Q ss_pred ECCccEECCCcEECCCcEECCCCeecCCCccCCCcEE
Q 024224 145 VGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVW 181 (270)
Q Consensus 145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv 181 (270)
||++. . +|+ +.++.++.+.+++++++++++
T Consensus 322 ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~ 351 (358)
T COG1208 322 IGASL-I-----IGD-VVIGINSEILPGVVVGPGSVV 351 (358)
T ss_pred ECCce-e-----ecc-eEecCceEEcCceEeCCCccc
Confidence 99933 2 666 666666666666666655544
No 135
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.15 E-value=3.7e-10 Score=98.67 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=50.6
Q ss_pred ceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEEC
Q 024224 91 SISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVE 158 (270)
Q Consensus 91 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig 158 (270)
.++||++|.|+.++.|.+.-.+ +...++.||++|+||.++.| ++.||++|.||+|++|..++.|-
T Consensus 199 dvvIGd~~~IgpGvsI~G~LsG--g~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 199 GVVVGDGSDIGGGASIMGTLSG--GGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred CCEECCCCEECCCceecceecC--CCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence 3678888888888886541100 01235999999999999999 99999999999999999887663
No 136
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=5.3e-10 Score=80.09 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=36.1
Q ss_pred ECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 94 VGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
||++|.|++++.|. ++.+++++.|++++.+.++.+++++.+++++.+..+..|++++.|+
T Consensus 20 Ig~~~~Ig~~~~i~-----------~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 20 IGPNVTIGDGVRLQ-----------RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred ECCCCEECCCcEEe-----------eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 34445555555554 4555666666666666666666666666666666556666665554
No 137
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.14 E-value=5.7e-10 Score=93.90 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=65.1
Q ss_pred EECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEece----E---ECCCcE
Q 024224 72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGC----T---VEDEAF 144 (270)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~----~---Ig~~~~ 144 (270)
.+|+++.|.+.+.+. ...++.||++|.|+.+|+|.. .+.++||++|.|++++.|... . -..+..
T Consensus 57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d--------~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~ 127 (203)
T PRK09527 57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVD--------DYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM 127 (203)
T ss_pred hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEec--------CCCEEECCCCEECCCCEEEeCCCCCChhhcccccc
Confidence 588999999988885 335799999999999999974 237899999999999988531 0 011222
Q ss_pred ECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEe
Q 024224 145 VGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWG 182 (270)
Q Consensus 145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~ 182 (270)
.+..++|.+++.||.+++|.+++.|..++.|++++++.
T Consensus 128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred ccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 23334444444444444444444444444444555554
No 138
>PLN02739 serine acetyltransferase
Probab=99.14 E-value=2.4e-10 Score=102.07 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=66.5
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC-CCCee
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA-AGSLV 169 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg-agsvV 169 (270)
++||++|.|..+|+|.+.... ...+.++||++|+||.+++| .+++||+++.||+|++|..+ |.+++++. .-+.+
T Consensus 232 avIGdnv~I~~gVTIGg~g~~--~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAri 307 (355)
T PLN02739 232 AVIGDRVSILHGVTLGGTGKE--TGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKL 307 (355)
T ss_pred CEECCCCEEcCCceeCCcCCc--CCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEE
Confidence 456677777777777543211 11346899999999999966 45999999999999999875 67777663 23333
Q ss_pred cCCCccCCCcEEeecCceec-cCCCHHHHHHHHHHHHHH
Q 024224 170 RQNTRIPSGEVWGGNPAKFL-RKLTDEEIAFISQSATNY 207 (270)
Q Consensus 170 ~~~~~I~~~~iv~G~pa~~i-~~~~~~~~~~~~~~~~~~ 207 (270)
.+. .. ...|+... .+.+++....+.......
T Consensus 308 I~~--~~-----~~~p~~~m~~DaT~e~~~~Ia~ay~~l 339 (355)
T PLN02739 308 IGF--VD-----EQDPSLTMEYDATREFFQNVAVAYRET 339 (355)
T ss_pred ecc--CC-----ccchhhhhhhhhhHHHHHHHHHHHHhh
Confidence 222 11 11355433 245566555555544443
No 139
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.13 E-value=9.3e-10 Score=78.81 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=62.3
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
+++++.|++++.+++++.||++|.|++++.|. +..|+++|.|++++.|. ++.+++++.+++++.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~----~sii~~~~~i~~~~~i~-----------~sii~~~~~v~~~~~~ 66 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ----RCVILSNSTVRDHSWVK-----------SSIVGWNSTVGRWTRL 66 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEe----eeEEcCCCEECCCCEEe-----------CCEEeCCCEECCCcEE
Confidence 45667777777777777788888888888887 35889999999999997 6899999999998877
Q ss_pred ec-eEECCCcEEC
Q 024224 135 HG-CTVEDEAFVG 146 (270)
Q Consensus 135 ~~-~~Ig~~~~Ig 146 (270)
.+ +.||+++.|+
T Consensus 67 ~~~~~ig~~~~i~ 79 (80)
T cd05824 67 ENVTVLGDDVTIK 79 (80)
T ss_pred ecCEEECCceEEC
Confidence 66 7777777665
No 140
>PLN02694 serine O-acetyltransferase
Probab=99.12 E-value=3.9e-10 Score=98.82 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=49.7
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
+.||++|.|..++++.+.... ...++++||++|+||.+++| .+++||++|.||++++|.++ |.+++++
T Consensus 187 a~IGdnv~I~~~VtLGg~g~~--~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v 255 (294)
T PLN02694 187 AVIGNNVSILHHVTLGGTGKA--CGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID--VPPRTTA 255 (294)
T ss_pred cEECCCCEEeecceeCCcccc--cCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc--CCCCcEE
Confidence 345566666677776542110 01247899999999999987 66999999999999999875 6666655
No 141
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=1.2e-09 Score=77.81 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=60.0
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL 134 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i 134 (270)
|++++.|++++.+.+ +.||++|.|++++.|. +..|+++|.|++++.+. +++|++++.|++++.+
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~----~svi~~~~~i~~~~~i~-----------~svv~~~~~i~~~~~i 65 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT----NSILMDNVTIGANSVIV-----------DSIIGDNAVIGENVRV 65 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEe----CCEEeCCCEECCCCEEE-----------CCEECCCCEECCCCEE
Confidence 567777877777776 7888999999999887 24899999999999997 5788999888888776
Q ss_pred ec-eEECCCcEEC
Q 024224 135 HG-CTVEDEAFVG 146 (270)
Q Consensus 135 ~~-~~Ig~~~~Ig 146 (270)
.. +.|++++.|+
T Consensus 66 ~~~~~ig~~~~i~ 78 (79)
T cd03356 66 VNLCIIGDDVVVE 78 (79)
T ss_pred cCCeEECCCeEEC
Confidence 55 6666666554
No 142
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.1e-10 Score=100.63 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=74.8
Q ss_pred cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224 65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF 144 (270)
Q Consensus 65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~ 144 (270)
+.++.++.+|++|.|++++.|. ..+||.+|.||+.+.|. ++.+.++++||+|+.|.+|+||+++.
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik----~SviG~nC~Ig~~~~v~-----------nSilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIK----RSVIGSNCDIGERVKVA-----------NSILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred eccchhhccCCCceecccceee----eeeecCCccccCCcEEE-----------eeEeecCcEecCCcceecceecccce
Confidence 5666778888888888888886 45999999999999998 79999999999999999999999999
Q ss_pred ECCccEECCCcEECCCcEECCCCe
Q 024224 145 VGMGATLLDGVVVERHGMVAAGSL 168 (270)
Q Consensus 145 Ig~~a~I~~gv~Ig~~~vIgagsv 168 (270)
||++|.+. +|.||.+-+|-|...
T Consensus 394 Ig~gs~L~-nC~Ig~~yvVeak~~ 416 (433)
T KOG1462|consen 394 IGSGSKLK-NCIIGPGYVVEAKGK 416 (433)
T ss_pred ecCCCeee-eeEecCCcEEccccc
Confidence 99999996 477666666654433
No 143
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.08 E-value=2.6e-09 Score=80.51 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=36.4
Q ss_pred EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEE
Q 024224 60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV 139 (270)
Q Consensus 60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~I 139 (270)
+|++++.|. ++.||++|.|+ ++.|. +..||++|.|++++.|. ++.|++++.|+.++.+.++.|
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~----~svi~~~~~Ig~~~~I~-----------~siI~~~~~Ig~~~~i~~sii 65 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVE----NSVLFRGVRVGSGSVVE-----------DSVIMPNVGIGRNAVIRRAII 65 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEE----eCEEeCCCEECCCCEEE-----------EeEEcCCCEECCCCEEEeEEE
Confidence 344444442 34455555554 44444 12455555555555554 344555555555555444444
Q ss_pred CCCcEECCccEEC
Q 024224 140 EDEAFVGMGATLL 152 (270)
Q Consensus 140 g~~~~Ig~~a~I~ 152 (270)
|+++.|++++.+.
T Consensus 66 g~~~~Ig~~~~v~ 78 (104)
T cd04651 66 DKNVVIPDGVVIG 78 (104)
T ss_pred CCCCEECCCCEEC
Confidence 4444444444443
No 144
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.07 E-value=1.5e-09 Score=81.81 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=68.2
Q ss_pred CEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcE
Q 024224 77 SSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVV 156 (270)
Q Consensus 77 ~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~ 156 (270)
++|++++.|. +..||++|.|+ ++.|. ++.|++++.|++++.|.++.|++++.||.++.+ .++.
T Consensus 2 ~~i~~~~~i~----~s~Ig~~~~I~-~~~I~-----------~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~si 64 (104)
T cd04651 2 PYIGRRGEVK----NSLVSEGCIIS-GGTVE-----------NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAI 64 (104)
T ss_pred ceecCCCEEE----eEEECCCCEEc-CeEEE-----------eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEE
Confidence 3455666664 35788999998 88887 688999999999999999999999999999999 5799
Q ss_pred ECCCcEECCCCeecCC
Q 024224 157 VERHGMVAAGSLVRQN 172 (270)
Q Consensus 157 Ig~~~vIgagsvV~~~ 172 (270)
|++++.|++++.+..+
T Consensus 65 ig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 65 IDKNVVIPDGVVIGGD 80 (104)
T ss_pred ECCCCEECCCCEECCC
Confidence 9999999999999887
No 145
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.06 E-value=3.2e-10 Score=87.90 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=78.9
Q ss_pred ceeCCCCEECCCcEEec---CeEECCCCEEccCCEEEcCC---------CceEECCCCEECCCCEEEcCCCCCCCCccCe
Q 024224 53 PAVDKDAFVAPSASIIG---DVQVGRGSSIWYGCVLRGDV---------NSISVGSGTNIQDNSLVHVAKSNLSGKVLPT 120 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~ 120 (270)
..+...+.+..++.|.+ ++.+|..|.+..+++|++.. .++.||+++.|++.|++. -.
T Consensus 34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn-----------AA 102 (184)
T KOG3121|consen 34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN-----------AA 102 (184)
T ss_pred EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee-----------hh
Confidence 35566678888899987 59999999999999998543 479999999999999998 46
Q ss_pred EECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCC
Q 024224 121 TIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAG 166 (270)
Q Consensus 121 ~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgag 166 (270)
.||++|++|.+++|+. |++.|.|.|-+++++-+.+.+.+.+.++++
T Consensus 103 qIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 103 QIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred hheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence 7888888888876644 666666666666666666666666666544
No 146
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.05 E-value=2.4e-09 Score=75.47 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=38.7
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCC-----CceEECCCCEECCCCEE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDV-----NSISVGSGTNIQDNSLV 106 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-----~~v~IG~~~~I~~~~~I 106 (270)
.|++++.|++++.|.+.+.||++|.|++++.|.+.. .++.||++|.|+.++++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i 59 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVI 59 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEE
Confidence 588999999999998899999999999999998542 12444444444444444
No 147
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.04 E-value=2.8e-09 Score=97.28 Aligned_cols=106 Identities=24% Similarity=0.306 Sum_probs=74.2
Q ss_pred ECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEEC
Q 024224 61 VAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVE 140 (270)
Q Consensus 61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig 140 (270)
+.+.+.+.+.+.||++|.| .++.|.+ ++.||++|.|+ +++|.. +++||++|.|+ ++.|.+++|+
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~~i~~---~~~Ig~~~~I~-~~~i~~----------~~~Ig~~~~i~-~~~i~~s~i~ 308 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNSVIRG---PAVIGEDCIIE-NSYIGP----------YTSIGEGVVIR-DAEVEHSIVL 308 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCCEEEC---CcEECCCCEEc-CcEECC----------CCEECCCCEEe-eeEEEeeEEc
Confidence 5666777888889999999 7888874 46888888886 455542 67777777776 5777778888
Q ss_pred CCcEECCcc-EECCCcEECCCcEECCCCeecCCCccCCCcEEeecCcee
Q 024224 141 DEAFVGMGA-TLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKF 188 (270)
Q Consensus 141 ~~~~Ig~~a-~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~ 188 (270)
+++.|+.++ .+ .++.|++++.|++++.+..+ ..++.|.++++
T Consensus 309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~-----~~~~~g~~~~~ 351 (353)
T TIGR01208 309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGD-----LRLTIGDYSQV 351 (353)
T ss_pred CCCEEcCCccee-ecCEEcCCCEECCCcccccc-----cceEEcCCcee
Confidence 888887774 44 45777777777666555432 23567766653
No 148
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.03 E-value=2.6e-09 Score=100.29 Aligned_cols=100 Identities=16% Similarity=0.354 Sum_probs=72.1
Q ss_pred CcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC---------------C---
Q 024224 64 SASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD---------------N--- 125 (270)
Q Consensus 64 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~---------------~--- 125 (270)
++.+.+ +.|+++|.|+ ++.|. +.+||++|.|+++|.|.. .+.+|. +
T Consensus 310 ~~~i~~-s~I~~~~~I~-~~~I~----~svI~~~~~Ig~~~~I~~----------sii~g~~~~~~~~~~~~~~~~~~~~ 373 (436)
T PLN02241 310 DCRITD-SIISHGCFLR-ECKIE----HSVVGLRSRIGEGVEIED----------TVMMGADYYETEEEIASLLAEGKVP 373 (436)
T ss_pred CCeEEE-eEEcCCcEEc-CeEEE----eeEEcCCCEECCCCEEEE----------eEEECCCccccccccccccccCCcc
Confidence 344444 7788888888 88886 248999999999999874 333342 2
Q ss_pred cEECcCcEEeceEECCCcEECCccEEC------CCcEECCCcEECCC-CeecCCCccCCCc
Q 024224 126 VTVGHSAVLHGCTVEDEAFVGMGATLL------DGVVVERHGMVAAG-SLVRQNTRIPSGE 179 (270)
Q Consensus 126 v~I~~~~~i~~~~Ig~~~~Ig~~a~I~------~gv~Ig~~~vIgag-svV~~~~~I~~~~ 179 (270)
+.|+.++.+.+++|+++|+||+++.+. +..++|++++|+.| ++|++++.+++++
T Consensus 374 ~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 374 IGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred eEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 378888888888899999999988886 44566777777776 3666666666554
No 149
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.5e-09 Score=97.86 Aligned_cols=99 Identities=23% Similarity=0.379 Sum_probs=81.0
Q ss_pred CCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEEC
Q 024224 50 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVG 129 (270)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~ 129 (270)
...+.|++++.|++++.|++++.||++|.|+.++.|. +..|.++|.|++++.|. +++||++|.|+
T Consensus 259 ~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~----~Sii~~~~~i~~~~~i~-----------~sIi~~~~~ig 323 (358)
T COG1208 259 IGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK----NSIIMDNVVIGHGSYIG-----------DSIIGENCKIG 323 (358)
T ss_pred eCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEE----eeEEEcCCEECCCCEEe-----------eeEEcCCcEEC
Confidence 3445677777777777777777788888888777776 46999999999999998 79999999999
Q ss_pred cCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224 130 HSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169 (270)
Q Consensus 130 ~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV 169 (270)
. +. . ||+ +.+|.++.+.++++++.++++.++.++
T Consensus 324 ~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~ 357 (358)
T COG1208 324 A-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE 357 (358)
T ss_pred C-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence 9 22 2 999 999999999999999998888777654
No 150
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.03 E-value=3.3e-09 Score=79.36 Aligned_cols=45 Identities=33% Similarity=0.483 Sum_probs=38.3
Q ss_pred cCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEEC
Q 024224 118 LPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 118 ~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
+.++||++++|+.++.+.. ++||++|+|++++.|.++ +.+++++.
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~ 98 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTVV 98 (101)
T ss_pred CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEEE
Confidence 4789999999999998876 999999999999999874 66766654
No 151
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.00 E-value=6.1e-09 Score=78.86 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.3
Q ss_pred CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEe
Q 024224 90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLH 135 (270)
Q Consensus 90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~ 135 (270)
.+++||++|.|++++.|... ..++||++|.|++++.+.
T Consensus 2 ~~i~iG~~~~I~~~~~i~~~--------~~i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 2 WNLTIGDNSWIGEGVWIYNL--------APVTIGSDACISQGAYLC 39 (107)
T ss_pred ceEEECCCCEECCCCEEeeC--------CceEECCCCEECCCeEee
Confidence 35788888888888888742 257888888888887764
No 152
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.97 E-value=7.7e-09 Score=82.65 Aligned_cols=104 Identities=23% Similarity=0.272 Sum_probs=70.6
Q ss_pred ceeCCCCEECC-CcEEec-CeEECCCCEEccCCEEEcC-CCc--------eEECCCCEECCCCEEEcCCCCCCCCccCeE
Q 024224 53 PAVDKDAFVAP-SASIIG-DVQVGRGSSIWYGCVLRGD-VNS--------ISVGSGTNIQDNSLVHVAKSNLSGKVLPTT 121 (270)
Q Consensus 53 ~~i~~~~~I~~-~~~i~~-~v~IG~~~~I~~~~~I~~~-~~~--------v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~ 121 (270)
..||++++|++ .+.+.. .+.||++|.|++++.|... ..+ ..++++...++ ..........+++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~ 75 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDD------AKFDDWPSKGDVI 75 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccc------cccccccccCCcE
Confidence 36888999988 455554 7999999999999998743 111 11111111000 0000111245899
Q ss_pred ECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEEC
Q 024224 122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMVA 164 (270)
Q Consensus 122 Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIg 164 (270)
||++|+|+.++.+ .+++||++|+||++|+|.++ ++++++++
T Consensus 76 Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~ 117 (145)
T cd03349 76 IGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVG 117 (145)
T ss_pred ECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEE
Confidence 9999999999988 56999999999999999875 56776663
No 153
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.97 E-value=5e-09 Score=98.22 Aligned_cols=94 Identities=18% Similarity=0.358 Sum_probs=72.3
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECC-------------------CcEECc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGD-------------------NVTVGH 130 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~-------------------~v~I~~ 130 (270)
++.||++|.| +++.|. +.+||++|.|+++|.|. +++|+. ++.|+.
T Consensus 308 ~~~ig~~~~i-~~~~i~----~svi~~~~~Ig~~~~i~-----------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~ 371 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH----HSVLGIRSRIESGCTIE-----------DTLVMGADFYESSEEREELRKEGKPPLGIGE 371 (429)
T ss_pred eCEECCCCEE-CCcEEE----EEEEeCCcEECCCCEEE-----------eeEEecCcccccccccccccccCCcccEECC
Confidence 4788888888 788876 35999999999999997 456644 688999
Q ss_pred CcEEeceEECCCcEECCccEECCCcEECC------CcEECCC-CeecCCCccCCCc
Q 024224 131 SAVLHGCTVEDEAFVGMGATLLDGVVVER------HGMVAAG-SLVRQNTRIPSGE 179 (270)
Q Consensus 131 ~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~------~~vIgag-svV~~~~~I~~~~ 179 (270)
+|.|..++|+++|.||+++.|..+..+.. +++|+.| ++|++++.+++++
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (429)
T PRK02862 372 GTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT 427 (429)
T ss_pred CCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence 99999999999999999999965443332 5666666 5566666666654
No 154
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.96 E-value=6.2e-09 Score=95.02 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=64.2
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
+.+.+.++|++++.| .++.|+..|.|+++|.|. +.+|+.+|.|+++|.|.. .. -.+++|++++.|+.++
T Consensus 249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~----~~~i~~~~~Ig~~~~i~~-~~-----i~~s~i~~~~~i~~~~ 317 (353)
T TIGR01208 249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE----NSYIGPYTSIGEGVVIRD-AE-----VEHSIVLDESVIEGVQ 317 (353)
T ss_pred CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc----CcEECCCCEECCCCEEee-eE-----EEeeEEcCCCEEcCCc
Confidence 344455555555555 444455555556666554 135556666666666541 10 1278899999998874
Q ss_pred -EEeceEECCCcEECCccEECC--CcEECCCcEEC
Q 024224 133 -VLHGCTVEDEAFVGMGATLLD--GVVVERHGMVA 164 (270)
Q Consensus 133 -~i~~~~Ig~~~~Ig~~a~I~~--gv~Ig~~~vIg 164 (270)
.+.+++||+++.|+.++.+.. +..+|+++.|+
T Consensus 318 ~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 318 ARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred ceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 788888999999988888864 35677777654
No 155
>PLN02357 serine acetyltransferase
Probab=98.92 E-value=2.1e-08 Score=90.33 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=50.0
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEE-eceEECCCcEECCccEECCCcEECCCcEE
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGMV 163 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vI 163 (270)
++||++|.|..+|+|.+.... . ..+.++||++|+||.++.| .+++||+++.||++++|..+ |.+++++
T Consensus 253 avIGdnV~I~~gVtIGg~g~~-~-g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v 321 (360)
T PLN02357 253 AVVGNNVSILHNVTLGGTGKQ-S-GDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTA 321 (360)
T ss_pred CEECCCCEEeCCceecCcccc-C-CccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEE
Confidence 456677777777777643211 1 1246899999999999966 66999999999999999875 5555544
No 156
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.91 E-value=1.1e-08 Score=96.01 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=63.8
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECC---------------C---CEECCCCEEEcCCCCCCC
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGS---------------G---TNIQDNSLVHVAKSNLSG 115 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~---------------~---~~I~~~~~I~~~~~~~~~ 115 (270)
.|++++.|+ ++.|. ++.||++|.|+++|.|. ..+.+|. + +.|+++|.|.
T Consensus 317 ~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~---~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 383 (436)
T PLN02241 317 IISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIE---DTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIR-------- 383 (436)
T ss_pred EEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEE---EeEEECCCccccccccccccccCCcceEECCCCEEc--------
Confidence 355555555 55553 45677777777777776 2355563 2 2677777775
Q ss_pred CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCC-cEECCCcEECCCCee
Q 024224 116 KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVERHGMVAAGSLV 169 (270)
Q Consensus 116 ~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~g-v~Ig~~~vIgagsvV 169 (270)
+++|+++|+|++++.+.+ .-+.+...+|.++.+..| |.||+++.|.+||+|
T Consensus 384 ---~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 384 ---NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ---ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 577888888888887753 344444455555555555 578888888877764
No 157
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.84 E-value=3.7e-08 Score=90.76 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred cEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcE
Q 024224 65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAF 144 (270)
Q Consensus 65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~ 144 (270)
..+.....+...++|++++.|. +..||++|.|+. .+. .++||++|.|+++|.|.+++|+++|.
T Consensus 271 ~~~~~~~~~~~~~~i~~~~~i~----~~~Ig~~~~I~~--~v~-----------~s~ig~~~~I~~~~~i~~svi~~~~~ 333 (380)
T PRK05293 271 WRIYSVNPNLPPQYIAENAKVK----NSLVVEGCVVYG--TVE-----------HSVLFQGVQVGEGSVVKDSVIMPGAK 333 (380)
T ss_pred CceecCCcCCCCCEECCCCEEe----cCEECCCCEEcc--eec-----------ceEEcCCCEECCCCEEECCEEeCCCE
Confidence 3443444444556666666663 235666666642 232 68999999999999999999999999
Q ss_pred ECCccEECCCcEECCCcEECCCCeecCC
Q 024224 145 VGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 145 Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
|+++|.|. ++.|++++.|++++.+..+
T Consensus 334 i~~~~~i~-~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 334 IGENVVIE-RAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred ECCCeEEe-EEEECCCCEECCCCEEcCC
Confidence 99998885 4777777777777776654
No 158
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.9e-08 Score=86.29 Aligned_cols=69 Identities=26% Similarity=0.338 Sum_probs=45.4
Q ss_pred ceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCc
Q 024224 53 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSA 132 (270)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~ 132 (270)
+.|++++.++|.|.|++++.||.++.|++|++|+. .+|-++|.|.+|+++. +++||-.+.||..+
T Consensus 289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~----sIIl~d~ei~enavVl-----------~sIigw~s~iGrWa 353 (407)
T KOG1460|consen 289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE----SIILDDAEIEENAVVL-----------HSIIGWKSSIGRWA 353 (407)
T ss_pred eEEcCcceeCCccccCCCceecCCceecCCceeee----eeeccCcEeeccceEE-----------eeeeccccccccee
Confidence 45666666666666666677777777777777662 3666777777777665 56677666666666
Q ss_pred EEec
Q 024224 133 VLHG 136 (270)
Q Consensus 133 ~i~~ 136 (270)
.+.+
T Consensus 354 RVe~ 357 (407)
T KOG1460|consen 354 RVEG 357 (407)
T ss_pred eecc
Confidence 5544
No 159
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=5.1e-08 Score=88.32 Aligned_cols=96 Identities=23% Similarity=0.422 Sum_probs=78.3
Q ss_pred hccCCCceeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCc
Q 024224 47 NIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNV 126 (270)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v 126 (270)
.+..+...|.......|.+.+..+..+ .++.|..||+|.|...+.+|+.++.|+.+++|. +++|..+|
T Consensus 268 ~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-----------~svim~~~ 335 (393)
T COG0448 268 NLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-----------NSVIMPDV 335 (393)
T ss_pred cccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-----------eeEEeCCc
Confidence 344555566666777788887766664 567777888887765678999999999999998 79999999
Q ss_pred EECcCcEEeceEECCCcEECCccEECCC
Q 024224 127 TVGHSAVLHGCTVEDEAFVGMGATLLDG 154 (270)
Q Consensus 127 ~I~~~~~i~~~~Ig~~~~Ig~~a~I~~g 154 (270)
.||.+|.|..++|.++|.|++|+.|...
T Consensus 336 ~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 336 EIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 9999999999999999999999998765
No 160
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.77 E-value=6.7e-08 Score=88.41 Aligned_cols=64 Identities=17% Similarity=0.390 Sum_probs=40.3
Q ss_pred EECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCee
Q 024224 93 SVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLV 169 (270)
Q Consensus 93 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV 169 (270)
.||++|.|+.+ .+. ++.||++|.|+++|.+.+++|++++.||.++.| .+++||+++.|+++++|
T Consensus 296 ~ig~~~~I~~~-~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 296 LVSEGCIISGA-TVS-----------HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVI 359 (361)
T ss_pred EECCCCEECCC-EEE-----------ccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEe
Confidence 45555666554 443 456666666666666666677777777766666 35666666666666655
No 161
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.74 E-value=1.1e-07 Score=79.13 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=50.2
Q ss_pred CceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec-eEECCCcEECCc-cEECCCcEECCCcEECCCC
Q 024224 90 NSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMG-ATLLDGVVVERHGMVAAGS 167 (270)
Q Consensus 90 ~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~-a~I~~gv~Ig~~~vIgags 167 (270)
..+.+|++|.++.++.+.. ....+||+++.+++++.+.. ...++...-..+ ......++||++|+||+++
T Consensus 66 ~~~~iG~~~~i~~~~~~~~--------~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a 137 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILV--------GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGA 137 (190)
T ss_pred cceEECCeeEEcCCcEEEe--------cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCcc
Confidence 3456666666666666542 22456666666666665543 222222222121 2223345666666666666
Q ss_pred eecCCCccCCCcEEeecCceeccCCCHH
Q 024224 168 LVRQNTRIPSGEVWGGNPAKFLRKLTDE 195 (270)
Q Consensus 168 vV~~~~~I~~~~iv~G~pa~~i~~~~~~ 195 (270)
+|.++++|+++++++ +.+.+.++++++
T Consensus 138 ~IlpGV~IG~gavig-agsVVtkdvp~~ 164 (190)
T COG0110 138 VILPGVTIGEGAVIG-AGSVVTKDVPPY 164 (190)
T ss_pred EECCCEEECCCcEEe-eCCEEeCccCCC
Confidence 666665666665443 355555555544
No 162
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=82.07 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=54.0
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
.|-.+++|+|++.+.+.++||.|+ .||.++.||+|+.|. .++|-+++.|.+++.
T Consensus 284 ~IigdVyIhPsakvhptAkiGPNV---------------SIga~vrvg~GvRl~-----------~sIIl~d~ei~enav 337 (407)
T KOG1460|consen 284 EIIGDVYIHPSAKVHPTAKIGPNV---------------SIGANVRVGPGVRLR-----------ESIILDDAEIEENAV 337 (407)
T ss_pred eEEeeeEEcCcceeCCccccCCCc---------------eecCCceecCCceee-----------eeeeccCcEeeccce
Confidence 455555566655555555555554 556777777888887 688889999999999
Q ss_pred EeceEECCCcEECCccEE
Q 024224 134 LHGCTVEDEAFVGMGATL 151 (270)
Q Consensus 134 i~~~~Ig~~~~Ig~~a~I 151 (270)
+-.++||.++.||.-+.|
T Consensus 338 Vl~sIigw~s~iGrWaRV 355 (407)
T KOG1460|consen 338 VLHSIIGWKSSIGRWARV 355 (407)
T ss_pred EEeeeecccccccceeee
Confidence 999999999999977776
No 163
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.65 E-value=1.6e-07 Score=87.41 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=37.0
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
++.||++|.|+ ++.|.. .+||++|.|+++|.|. +++|+++|.|++++.|.+++|+++|.|++++
T Consensus 315 ~~~ig~~~~I~-~~~i~~----svIg~~~~I~~~~~i~-----------~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 378 (407)
T PRK00844 315 DSLVSAGSIIS-GATVRN----SVLSPNVVVESGAEVE-----------DSVLMDGVRIGRGAVVRRAILDKNVVVPPGA 378 (407)
T ss_pred eCEEcCCCEEC-CeeeEc----CEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCCCEECCCC
Confidence 45555555554 555541 3556666666666554 4555556555555555555555555555555
Q ss_pred EECC
Q 024224 150 TLLD 153 (270)
Q Consensus 150 ~I~~ 153 (270)
.|..
T Consensus 379 ~i~~ 382 (407)
T PRK00844 379 TIGV 382 (407)
T ss_pred EECC
Confidence 5533
No 164
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.65 E-value=6e-08 Score=80.95 Aligned_cols=104 Identities=23% Similarity=0.368 Sum_probs=64.9
Q ss_pred CceeCCCCEECCCc--EEecCeEECCCCEEcc--CCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcE
Q 024224 52 APAVDKDAFVAPSA--SIIGDVQVGRGSSIWY--GCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVT 127 (270)
Q Consensus 52 ~~~i~~~~~I~~~~--~i~~~v~IG~~~~I~~--~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~ 127 (270)
...++-+++|+|.. .|.+.+.||++..+-. +.+|. + ..+||++|.|.+++++.+..+ ..+..|+ .||++|+
T Consensus 134 ~lal~~q~ris~~~gvdihpaa~ig~gilldhatgvvig-e--TAvvg~~vSilH~Vtlggtgk-~~gdrhP-~Igd~vl 208 (269)
T KOG4750|consen 134 ILALGLQVRISPNFGVDIHPAAKIGKGILLDHATGVVIG-E--TAVVGDNVSILHPVTLGGTGK-GSGDRHP-KIGDNVL 208 (269)
T ss_pred eEEEeecceecccccccccchhhcccceeeccccceeec-c--eeEeccceeeecceeeccccc-cccccCC-cccCCeE
Confidence 33455555555543 3344455555544422 22222 1 245666666666666654333 2334566 9999999
Q ss_pred ECcCcEE-eceEECCCcEECCccEECCCcEECCCcE
Q 024224 128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVVVERHGM 162 (270)
Q Consensus 128 I~~~~~i-~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~v 162 (270)
||.+++| .++.||+++.||+|++|..+ |.++.+
T Consensus 209 iGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~ 242 (269)
T KOG4750|consen 209 IGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTL 242 (269)
T ss_pred EccccEEeCCeeECCCcEEeccceEEec--cCCCce
Confidence 9999955 66999999999999999875 444443
No 165
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.63 E-value=2.2e-07 Score=85.01 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=65.1
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
.+.+.++|++.+.+ +++.||++|.|+++ .+. +..||++|.|+++|.|. +++|++++.|++++.
T Consensus 279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~----~s~i~~~~~I~~~~~i~-----------~sii~~~~~v~~~~~ 341 (361)
T TIGR02091 279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS----HSVLGIRVRIGSGSTVE-----------DSVIMGDVGIGRGAV 341 (361)
T ss_pred CCCCceEecCCCEE-ECCEECCCCEECCC-EEE----ccEECCCCEECCCCEEe-----------eeEEeCCCEECCCCE
Confidence 34556677777644 56777888888765 554 35899999999999997 799999999999999
Q ss_pred EeceEECCCcEECCccEEC
Q 024224 134 LHGCTVEDEAFVGMGATLL 152 (270)
Q Consensus 134 i~~~~Ig~~~~Ig~~a~I~ 152 (270)
+++++||+++.|+.++.|.
T Consensus 342 l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 342 IRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EeeeEECCCCEECCCCEeC
Confidence 9988888888888887764
No 166
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.61 E-value=1.8e-07 Score=85.87 Aligned_cols=66 Identities=21% Similarity=0.432 Sum_probs=49.4
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
+.||++|.|+ ..+. +++|+++|.|+.+|.+.+++|+++|.|++++.+. ++.||++++|++++.+..
T Consensus 290 ~~Ig~~~~i~--~~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 290 SLVANGCIIE--GKVE-----------NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred eEEcCCCEEe--eEEe-----------CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCEeCC
Confidence 3566677775 2343 5778888888888888888888888888888874 477888888887777744
No 167
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=9.8e-08 Score=85.61 Aligned_cols=75 Identities=24% Similarity=0.435 Sum_probs=63.1
Q ss_pred ceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224 91 SISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170 (270)
Q Consensus 91 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~ 170 (270)
...+|++|.|++++.|. .++||++|.||+.+++.++.|-+++.||.|+.| +++.||.+|.||+||.+.
T Consensus 334 d~iv~~~t~i~~~s~ik-----------~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~ 401 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIK-----------RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK 401 (433)
T ss_pred hhccCCCceecccceee-----------eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee
Confidence 35778888888888887 799999999999999999999999999999998 469999999999988875
Q ss_pred CCCccCCC
Q 024224 171 QNTRIPSG 178 (270)
Q Consensus 171 ~~~~I~~~ 178 (270)
. +.|+++
T Consensus 402 n-C~Ig~~ 408 (433)
T KOG1462|consen 402 N-CIIGPG 408 (433)
T ss_pred e-eEecCC
Confidence 4 344444
No 168
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.57 E-value=4.2e-07 Score=85.25 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=14.6
Q ss_pred eCCCCEECCCcEEecCeEECCCCEEccCCEEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLR 86 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~ 86 (270)
|++++.| +++.|. ++.||.+|.|++++.|.
T Consensus 311 ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~ 340 (429)
T PRK02862 311 IAEGCII-KNCSIH-HSVLGIRSRIESGCTIE 340 (429)
T ss_pred ECCCCEE-CCcEEE-EEEEeCCcEECCCCEEE
Confidence 4444444 333332 34555555555555554
No 169
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.57 E-value=1.1e-07 Score=74.59 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=87.5
Q ss_pred cCCCceeCCCCEECCCcEEe---cCeEECCCCEEccCCEEEc----------CCCceEECCCCEECCCCEEEcCCCCCCC
Q 024224 49 FDKAPAVDKDAFVAPSASII---GDVQVGRGSSIWYGCVLRG----------DVNSISVGSGTNIQDNSLVHVAKSNLSG 115 (270)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~----------~~~~v~IG~~~~I~~~~~I~~~~~~~~~ 115 (270)
+...+.|++++.+||.+.+. |.++||+|+.|.+.++|.. +..+..||.+..+.-+|...
T Consensus 23 irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~-------- 94 (190)
T KOG4042|consen 23 IRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS-------- 94 (190)
T ss_pred cccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh--------
Confidence 34567899999999999885 5799999999999998863 22368899998888777765
Q ss_pred CccCeEECCCcEECcCcEEec-eEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 116 KVLPTTIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 116 ~~~~~~Ig~~v~I~~~~~i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
-..+||+..|+..+.+++ +++-++|.+|+.+.+...-.+.++++|-+-.-+.+
T Consensus 95 ---A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R 148 (190)
T KOG4042|consen 95 ---AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSR 148 (190)
T ss_pred ---hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccc
Confidence 356788888877776654 78888888888888888888888888854444433
No 170
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.55 E-value=3.7e-07 Score=85.50 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=22.2
Q ss_pred eEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224 120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170 (270)
Q Consensus 120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~ 170 (270)
++||++|.|+.+|.+.+|+|+++|.||.+|.| .++.|+++|.|+++++|.
T Consensus 344 svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 344 SVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred CEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEEC
Confidence 44444444444444444444444444444444 234444444444444443
No 171
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.54 E-value=1.3e-07 Score=83.35 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=66.5
Q ss_pred EECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEE
Q 024224 60 FVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTV 139 (270)
Q Consensus 60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~I 139 (270)
...|++.+.+++.+..-..++.+|.|.+ +++||.+|.|++++.|. ++++..+++++..+.+..+.+
T Consensus 254 r~~p~~~i~~nvlvd~~~~iG~~C~Ig~---~vvIG~r~~i~~gV~l~-----------~s~il~~~~~~~~s~i~s~iv 319 (371)
T KOG1322|consen 254 RLLPGSKIVGNVLVDSIASIGENCSIGP---NVVIGPRVRIEDGVRLQ-----------DSTILGADYYETHSEISSSIV 319 (371)
T ss_pred cccCCccccccEeeccccccCCccEECC---CceECCCcEecCceEEE-----------eeEEEccceechhHHHHhhhc
Confidence 3334444444444444444444444442 24567888888888887 677778888888888888888
Q ss_pred CCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224 140 EDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 140 g~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
|-++.||.++.|-..++||++++|..-..|..+
T Consensus 320 g~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 320 GWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred cccccccCceEEecccEeccceEEecccccccc
Confidence 888888888888887888888777655555444
No 172
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.52 E-value=5.2e-07 Score=84.04 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=60.9
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
+.||++|.|+ ++.|. +++||++|.|+++|.+.+++|+++|.|+.+|.|. ++.|++++.|+++++|..
T Consensus 316 ~~ig~~~~I~-~~~i~-----------~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 316 SLVSAGSIIS-GATVR-----------NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEcCCCEEC-CeeeE-----------cCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence 5778888887 88886 5899999999999999999999999999999995 589999999999998877
Q ss_pred C
Q 024224 172 N 172 (270)
Q Consensus 172 ~ 172 (270)
+
T Consensus 383 ~ 383 (407)
T PRK00844 383 D 383 (407)
T ss_pred C
Confidence 4
No 173
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.50 E-value=1.4e-07 Score=56.04 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=22.9
Q ss_pred eEECCCcEECCccEECCCcEECCCcEECCCCeecC
Q 024224 137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQ 171 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~ 171 (270)
++||++|+||++|.+ +++||++|+|++|++|++
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 578888888888888 588888888888888764
No 174
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.47 E-value=1.1e-06 Score=80.64 Aligned_cols=79 Identities=13% Similarity=0.271 Sum_probs=58.7
Q ss_pred CCCEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEec
Q 024224 57 KDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHG 136 (270)
Q Consensus 57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~ 136 (270)
+.++|++++.| +++.||++|.|+ +.+ .+.+||++|.|+++|.|. +++|++++.|+.++.+.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v----~~s~i~~~~~I~~~~~i~-----------~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKV----ENSILSRGVHVGKDALIK-----------NCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEE----eCCEECCCCEECCCCEEE-----------eeEEeCCCEECCCCEEEE
Confidence 44555555554 344455555553 123 246899999999999997 789999999999999999
Q ss_pred eEECCCcEECCccEECC
Q 024224 137 CTVEDEAFVGMGATLLD 153 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~ 153 (270)
++||+++.|++++.+.+
T Consensus 339 ~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 339 VIIDKDVVIEPNVKIAG 355 (369)
T ss_pred EEECCCCEECCCCEeCC
Confidence 99999999888888744
No 175
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.46 E-value=7.9e-07 Score=83.30 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=59.1
Q ss_pred CeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCcEECCcc
Q 024224 70 DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (270)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a 149 (270)
++.||++|.| .+|.|. +.+||++|.|+++|.|. +++|+++|.|++++.|.+|+|+++|.|++++
T Consensus 327 ~s~i~~~~~i-~~~~i~----~svi~~~~~I~~~~~i~-----------~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~ 390 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR----RSVLFSRVRVNSFSNVE-----------DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGM 390 (425)
T ss_pred eCEEcCCcEE-cCcccc----CCEECCCCEECCCCEEe-----------eeEEcCCCEECCCCEEeeEEECCCCEECCCC
Confidence 5677777777 677765 36899999999999997 7999999999999999999999888888887
Q ss_pred EECCCcE
Q 024224 150 TLLDGVV 156 (270)
Q Consensus 150 ~I~~gv~ 156 (270)
.|.+++.
T Consensus 391 ~i~~~~~ 397 (425)
T PRK00725 391 VIGEDPE 397 (425)
T ss_pred EECCCCC
Confidence 7765543
No 176
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.22 E-value=9e-07 Score=53.20 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=26.7
Q ss_pred eEECCCcEECCccEECCCcEECCCcEECCCCeec
Q 024224 137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVR 170 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~ 170 (270)
+.||++|+|++++.|.+++.||++++|+++++|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 5778888888888888888888888888887765
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.16 E-value=2.7e-06 Score=50.56 Aligned_cols=31 Identities=35% Similarity=0.720 Sum_probs=17.3
Q ss_pred eEECCCcEECcCcEEeceEECCCcEECCccEE
Q 024224 120 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 151 (270)
Q Consensus 120 ~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I 151 (270)
+.||++|+|++++.+ ++.|||+|.|++|++|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 456666666666665 5667777777776665
No 178
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=3.7e-05 Score=70.02 Aligned_cols=53 Identities=15% Similarity=0.396 Sum_probs=46.3
Q ss_pred CeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224 119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 119 ~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
+++|+.++.|+.+++|..|+|-.+|.||.||.|. ++.|.++|+|+.|.++..+
T Consensus 311 nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 311 NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEEeCCCcEeCCCcEEcCC
Confidence 7999999999999999999999999999999985 4778888888777777765
No 179
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.92 E-value=0.00018 Score=60.74 Aligned_cols=116 Identities=20% Similarity=0.298 Sum_probs=60.9
Q ss_pred eCCCCEECC-CcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcE
Q 024224 55 VDKDAFVAP-SASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAV 133 (270)
Q Consensus 55 i~~~~~I~~-~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~ 133 (270)
+-+++.+.. ..++.+++.||+++.+..+ ++|+...+++++.|.+ ..++.++.|..+|.
T Consensus 6 vPp~Tr~e~~~ivv~gdViIG~nS~l~~~----------V~g~~iivge~v~i~G-----------diva~diridmw~k 64 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVIIGKNSMLKYG----------VVGEEIIVGERVRIYG-----------DIVAKDIRIDMWCK 64 (277)
T ss_pred cCCCCceeeeeEEEeccEEEcccceeeee----------eeeeeEEeccCcEEee-----------eEEecceeeeeeeE
Confidence 445555532 3455566777777766544 4567777777777763 33334444444443
Q ss_pred Eec-eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCCCcEEeecCceeccCC
Q 024224 134 LHG-CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKL 192 (270)
Q Consensus 134 i~~-~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~~~iv~G~pa~~i~~~ 192 (270)
+.+ +..++++.||..+.|.+..++...--||+...+..+ -+..+-++.-+|-.++.-+
T Consensus 65 v~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Iegg-fva~g~Ivirnpvpvl~fl 123 (277)
T COG4801 65 VTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGG-FVAKGWIVIRNPVPVLEFL 123 (277)
T ss_pred eeccEEEcCceEEeccceeeeeEEEecccccccceEEecC-eeecceEEEcCCccEEEEE
Confidence 333 445555555555555544444433334433333333 1233346666777766544
No 180
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.90 E-value=1.9e-05 Score=69.84 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=14.5
Q ss_pred eeCCCCEECCCcEEecCeEECCCCEEccCCEE
Q 024224 54 AVDKDAFVAPSASIIGDVQVGRGSSIWYGCVL 85 (270)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I 85 (270)
.+-.++.+.+.+.++.+|.||.|+.||++++|
T Consensus 260 ~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i 291 (371)
T KOG1322|consen 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRI 291 (371)
T ss_pred cccccEeeccccccCCccEECCCceECCCcEe
Confidence 34444444444444444444444444444443
No 181
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.70 E-value=4.3e-05 Score=45.73 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=14.2
Q ss_pred EECCCCEEccCCEEEcCCCceEECCCCEECCCCEE
Q 024224 72 QVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLV 106 (270)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I 106 (270)
.||+++.|++++.|.+ .+.||++|.|+++++|
T Consensus 3 ~Ig~~~~i~~~~~i~~---~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGG---GVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEET---TEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecC---CCEECCCCEEcCCCEE
Confidence 3444444444444442 2444455555544444
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.42 E-value=0.00086 Score=56.68 Aligned_cols=41 Identities=7% Similarity=-0.015 Sum_probs=16.2
Q ss_pred eEECCCcEECCccEECCCcEECCCcEECCCCeecCCCccCC
Q 024224 137 CTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPS 177 (270)
Q Consensus 137 ~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~~~I~~ 177 (270)
|.|+-+|.+..|+.+.++..||+++.|....+|..|-.+++
T Consensus 57 iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~ 97 (277)
T COG4801 57 IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA 97 (277)
T ss_pred eeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence 33333333333333333444444444443333333333333
No 183
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=96.75 E-value=0.0031 Score=45.35 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=47.7
Q ss_pred cCCCcEEeecCceeccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccChHHHhhhcccccc
Q 024224 175 IPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRE 251 (270)
Q Consensus 175 I~~~~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (270)
|||++++.|+||++. .++.--++.---..+++..+.++|+..+...+.-.++..++...... +++..+...|+++
T Consensus 2 VpPf~~~~G~~a~~~-GlN~vGLrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~-~~~v~~~~~Fi~~ 76 (83)
T PF13720_consen 2 VPPFMLVAGNPARIR-GLNLVGLRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD-SPEVREIVDFIRN 76 (83)
T ss_dssp B-TTEEEETTTTEEE-EE-HHHHHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS-CHHHHHHHHHHHH
T ss_pred CCCeEEecCCccEEe-eeeHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC-CHHHHHHHHHHHh
Confidence 999999999999865 22222222211123455566677887887777777777777775553 6778888777763
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=90.79 E-value=0.61 Score=43.72 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=28.9
Q ss_pred CeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCC
Q 024224 119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERH 160 (270)
Q Consensus 119 ~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~ 160 (270)
++.+..++.++++++|..|.|+.++.||.+|+|. |+.+.+.
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~ 324 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSW 324 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccc
Confidence 5677777777777777777777777777777775 3544443
No 185
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.02 E-value=2.1 Score=40.12 Aligned_cols=41 Identities=12% Similarity=0.381 Sum_probs=31.2
Q ss_pred eEECCCCEECCCCEEEcCCCCCCCCccCeEECCCcEECcCcEEeceEECCCc
Q 024224 92 ISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEA 143 (270)
Q Consensus 92 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~v~I~~~~~i~~~~Ig~~~ 143 (270)
..+..++.++++++|. ++.++.++.||.+|+|.++.+.+..
T Consensus 285 Sil~~~~~vg~~svIe-----------~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 285 SILEGGVSVGPGSVIE-----------HSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred eEecCCceECCCCEEE-----------eeecCCCCEECCCCEEECCcccccc
Confidence 4677778888888876 6788888888888888887666553
No 186
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=80.44 E-value=9.3 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=24.2
Q ss_pred CEECCCcEEecCeEECCCCEEccCCEEEcCCCceEECCCCEECCCCEEE
Q 024224 59 AFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVH 107 (270)
Q Consensus 59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~v~IG~~~~I~~~~~I~ 107 (270)
+.|.+++.+.+++....+..+... +.+ .+.......|+.++.+.
T Consensus 3 ~~I~~~~~i~G~i~~~~~v~i~G~--v~G---~i~~~g~v~i~~~~~v~ 46 (101)
T PF04519_consen 3 TIIGKGTKIEGDISSDGDVRIDGR--VEG---NIKAEGKVKIGGNGEVK 46 (101)
T ss_pred EEECCCCEEEEEEEECcEEEEEEE--EEE---EEEEceEEEEcCCCEEE
Confidence 466677777777766665555333 442 24443345555555554
No 187
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=68.00 E-value=14 Score=27.08 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=25.6
Q ss_pred CeEECCCcEECcCcEEeceEECCCcEECCccEECCCcEECCCcEECCCCeecCC
Q 024224 119 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQN 172 (270)
Q Consensus 119 ~~~Ig~~v~I~~~~~i~~~~Ig~~~~Ig~~a~I~~gv~Ig~~~vIgagsvV~~~ 172 (270)
+......+.|+.++.+++-.-.+.+.|. +. +...+...+...|...+.|..+
T Consensus 30 ~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~ 81 (101)
T PF04519_consen 30 NIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEGD 81 (101)
T ss_pred EEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEEE
Confidence 3444345666666666654444444443 22 3333444444445555555554
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=65.81 E-value=7.9 Score=40.19 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=5.5
Q ss_pred ccCCCcEEeecC
Q 024224 174 RIPSGEVWGGNP 185 (270)
Q Consensus 174 ~I~~~~iv~G~p 185 (270)
.||+++.+...|
T Consensus 380 ~vP~~~ci~~vp 391 (974)
T PRK13412 380 DLPEGVCIDVVP 391 (974)
T ss_pred ecCCCcEEEEEE
Confidence 345554444433
No 189
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=39.36 E-value=39 Score=35.29 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=27.3
Q ss_pred CeEECCCcEECcCc-EEeceEECCCcEECCccEEC
Q 024224 119 PTTIGDNVTVGHSA-VLHGCTVEDEAFVGMGATLL 152 (270)
Q Consensus 119 ~~~Ig~~v~I~~~~-~i~~~~Ig~~~~Ig~~a~I~ 152 (270)
++.+...+.++++. .+..+.|+.++.||.+++|.
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT 370 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe
Confidence 67788888888875 47778888888888888885
No 190
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=37.39 E-value=58 Score=22.88 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred cEEeecCceeccCCCHHHHHHHHHHHHHHHHHHH
Q 024224 179 EVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 212 (270)
Q Consensus 179 ~iv~G~pa~~i~~~~~~~~~~~~~~~~~~~~l~~ 212 (270)
-+++| .+.+|++++++...++...++..+...
T Consensus 29 klyvn--g~~~R~Lt~~E~~eL~~y~~~v~~y~~ 60 (76)
T PF06394_consen 29 KLYVN--GKYARDLTPDEQQELKTYQKKVAAYKE 60 (76)
T ss_dssp EEEET--TCEEEE--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC--CEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 45554 678899999999998877766665554
No 191
>PRK15313 autotransport protein MisL; Provisional
Probab=34.79 E-value=2.8e+02 Score=28.95 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=5.9
Q ss_pred ceEECCCCEE
Q 024224 91 SISVGSGTNI 100 (270)
Q Consensus 91 ~v~IG~~~~I 100 (270)
.+++|++..|
T Consensus 185 ~i~~g~~~~i 194 (955)
T PRK15313 185 NIYVGDDLYI 194 (955)
T ss_pred eEEEcCceEE
Confidence 4566666655
No 192
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=29.63 E-value=2.2e+02 Score=22.61 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=14.9
Q ss_pred eCCCCEECCCcEEecCeEECCCCEE
Q 024224 55 VDKDAFVAPSASIIGDVQVGRGSSI 79 (270)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I 79 (270)
....+.|+.++.+.+++..-...+|
T Consensus 20 ~~~~tli~~g~~f~G~l~f~~~l~I 44 (146)
T COG1664 20 LKPETLIGAGTTFKGELVFEGPLRI 44 (146)
T ss_pred CCCCeEEecCCEEEEEEEecceEEE
Confidence 4456667777776666665444444
No 193
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=26.94 E-value=1.1e+02 Score=28.72 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.8
Q ss_pred EEecCeEECCCCEEccCCEEEc
Q 024224 66 SIIGDVQVGRGSSIWYGCVLRG 87 (270)
Q Consensus 66 ~i~~~v~IG~~~~I~~~~~I~~ 87 (270)
+|.|+|..|.|+.+...++|.+
T Consensus 449 tVsGdV~FGknV~LkGtViIia 470 (498)
T KOG2638|consen 449 TVSGDVWFGKNVSLKGTVIIIA 470 (498)
T ss_pred EEeccEEeccceEEeeEEEEEe
Confidence 4445555555555544444443
Done!