Query 024225
Match_columns 270
No_of_seqs 241 out of 1419
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1116 TauB ABC-type nitrate/ 100.0 9.5E-33 2.1E-37 236.9 9.2 180 76-265 2-195 (248)
2 COG1126 GlnQ ABC-type polar am 100.0 2.1E-32 4.5E-37 229.5 8.9 159 77-261 2-196 (240)
3 COG1125 OpuBA ABC-type proline 100.0 1.2E-31 2.5E-36 229.6 10.5 180 77-266 1-201 (309)
4 COG3842 PotA ABC-type spermidi 100.0 9.9E-32 2.2E-36 243.5 6.4 181 75-265 3-201 (352)
5 COG3839 MalK ABC-type sugar tr 100.0 3.8E-31 8.3E-36 238.5 8.6 183 75-265 1-198 (338)
6 COG1124 DppF ABC-type dipeptid 100.0 1.8E-30 4E-35 221.4 9.1 181 76-261 2-202 (252)
7 COG1136 SalX ABC-type antimicr 100.0 3.1E-30 6.7E-35 220.6 6.1 181 78-264 2-206 (226)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-29 3.2E-34 215.2 7.7 180 75-264 6-209 (263)
9 COG1118 CysA ABC-type sulfate/ 100.0 9.3E-29 2E-33 216.8 9.2 179 77-265 2-202 (345)
10 COG2884 FtsE Predicted ATPase 100.0 3.7E-28 8E-33 200.0 10.6 168 77-253 1-182 (223)
11 COG1135 AbcC ABC-type metal io 100.0 3.5E-28 7.5E-33 213.5 10.0 170 77-252 1-185 (339)
12 COG1131 CcmA ABC-type multidru 99.9 4.3E-28 9.3E-33 217.6 10.5 177 75-261 2-196 (293)
13 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.6E-28 1.4E-32 209.2 9.8 181 75-262 2-200 (254)
14 COG4175 ProV ABC-type proline/ 99.9 8.7E-28 1.9E-32 211.2 8.3 174 76-266 3-230 (386)
15 COG1123 ATPase components of v 99.9 1.7E-27 3.7E-32 224.8 10.7 213 47-262 238-491 (539)
16 COG1120 FepC ABC-type cobalami 99.9 1.5E-27 3.2E-32 207.9 9.3 179 77-264 2-202 (258)
17 COG4555 NatA ABC-type Na+ tran 99.9 1E-27 2.2E-32 199.1 7.5 176 77-261 1-193 (245)
18 TIGR03265 PhnT2 putative 2-ami 99.9 2E-27 4.3E-32 218.4 8.7 181 75-264 2-198 (353)
19 PRK11650 ugpC glycerol-3-phosp 99.9 2.5E-27 5.4E-32 217.9 8.8 180 76-264 2-198 (356)
20 COG3638 ABC-type phosphate/pho 99.9 4.1E-27 8.8E-32 199.9 9.3 168 76-252 2-191 (258)
21 PRK11432 fbpC ferric transport 99.9 2.7E-27 5.8E-32 217.3 8.9 182 74-264 3-200 (351)
22 COG4525 TauB ABC-type taurine 99.9 4.1E-27 8.8E-32 194.7 7.9 183 75-265 1-197 (259)
23 COG4608 AppF ABC-type oligopep 99.9 7.9E-27 1.7E-31 202.8 10.0 154 75-262 2-171 (268)
24 PRK13537 nodulation ABC transp 99.9 6.7E-27 1.5E-31 211.2 9.1 178 75-262 5-199 (306)
25 PRK09452 potA putrescine/sperm 99.9 7.1E-27 1.5E-31 216.0 8.8 182 74-264 11-208 (375)
26 COG1117 PstB ABC-type phosphat 99.9 1.1E-26 2.4E-31 194.5 8.6 167 75-261 5-208 (253)
27 PRK13536 nodulation factor exp 99.9 1.3E-26 2.7E-31 212.0 9.3 178 75-262 39-233 (340)
28 PRK11607 potG putrescine trans 99.9 2.4E-26 5.1E-31 212.8 9.0 182 74-264 16-213 (377)
29 PRK11000 maltose/maltodextrin 99.9 2.3E-26 5E-31 212.6 8.7 180 76-264 2-197 (369)
30 TIGR02314 ABC_MetN D-methionin 99.9 2.7E-26 5.9E-31 209.8 8.9 182 77-263 1-203 (343)
31 COG1122 CbiO ABC-type cobalt t 99.9 5.6E-26 1.2E-30 197.1 10.1 181 76-264 2-202 (235)
32 TIGR03258 PhnT 2-aminoethylpho 99.9 3E-26 6.5E-31 211.1 8.6 179 77-264 5-202 (362)
33 PRK11022 dppD dipeptide transp 99.9 6.9E-26 1.5E-30 206.3 9.8 189 75-263 1-216 (326)
34 COG1137 YhbG ABC-type (unclass 99.9 1.2E-26 2.6E-31 192.5 3.8 150 75-252 2-183 (243)
35 TIGR00960 3a0501s02 Type II (G 99.9 6E-26 1.3E-30 194.9 7.9 178 78-262 2-199 (216)
36 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.3E-26 1.4E-30 194.9 8.0 181 78-263 1-203 (218)
37 COG0444 DppD ABC-type dipeptid 99.9 7.4E-26 1.6E-30 200.7 8.6 186 77-262 1-215 (316)
38 cd03265 ABC_DrrA DrrA is the A 99.9 7.8E-26 1.7E-30 194.8 8.2 177 78-263 1-194 (220)
39 TIGR01288 nodI ATP-binding ABC 99.9 7.8E-26 1.7E-30 204.0 8.5 177 77-262 4-196 (303)
40 PRK11629 lolD lipoprotein tran 99.9 1.4E-25 3.1E-30 194.8 9.7 183 76-263 4-208 (233)
41 PRK10851 sulfate/thiosulfate t 99.9 7.8E-26 1.7E-30 207.8 8.2 179 77-264 2-200 (353)
42 PRK11308 dppF dipeptide transp 99.9 1.6E-25 3.4E-30 203.9 10.1 187 75-264 3-218 (327)
43 cd03259 ABC_Carb_Solutes_like 99.9 7.8E-26 1.7E-30 193.8 7.6 176 78-262 1-192 (213)
44 COG4152 ABC-type uncharacteriz 99.9 1.2E-25 2.7E-30 191.5 8.7 155 77-252 2-174 (300)
45 TIGR02673 FtsE cell division A 99.9 1.3E-25 2.9E-30 192.4 8.4 176 78-262 2-198 (214)
46 PRK15093 antimicrobial peptide 99.9 1.3E-25 2.9E-30 204.7 8.7 190 75-264 1-222 (330)
47 PRK15079 oligopeptide ABC tran 99.9 1.7E-25 3.6E-30 204.1 9.2 186 76-264 7-225 (331)
48 cd03261 ABC_Org_Solvent_Resist 99.9 1E-25 2.3E-30 195.9 7.4 177 78-263 1-199 (235)
49 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.2E-25 2.6E-30 193.6 7.7 180 78-262 1-193 (220)
50 PRK10584 putative ABC transpor 99.9 2.9E-25 6.4E-30 192.1 9.9 182 76-262 5-208 (228)
51 TIGR03522 GldA_ABC_ATP gliding 99.9 1.8E-25 3.8E-30 201.5 8.8 176 77-262 2-193 (301)
52 PRK11248 tauB taurine transpor 99.9 1.8E-25 4E-30 196.9 8.4 176 78-262 2-190 (255)
53 PRK09473 oppD oligopeptide tra 99.9 3.2E-25 6.9E-30 202.2 10.0 187 74-263 9-224 (330)
54 cd03263 ABC_subfamily_A The AB 99.9 1.7E-25 3.7E-30 192.5 7.7 178 78-262 1-193 (220)
55 TIGR02211 LolD_lipo_ex lipopro 99.9 2.7E-25 5.9E-30 191.4 8.8 182 77-263 1-204 (221)
56 cd03266 ABC_NatA_sodium_export 99.9 2E-25 4.3E-30 191.8 7.8 180 78-262 2-197 (218)
57 cd03269 ABC_putative_ATPase Th 99.9 1.8E-25 3.8E-30 191.2 7.5 177 78-263 1-190 (210)
58 cd03225 ABC_cobalt_CbiO_domain 99.9 2.3E-25 4.9E-30 190.5 7.7 177 79-262 1-195 (211)
59 PRK11153 metN DL-methionine tr 99.9 3.1E-25 6.8E-30 203.3 8.9 182 77-263 1-203 (343)
60 cd03258 ABC_MetN_methionine_tr 99.9 3.6E-25 7.9E-30 192.1 8.5 181 78-263 2-203 (233)
61 cd03301 ABC_MalK_N The N-termi 99.9 2.9E-25 6.3E-30 190.1 7.7 176 78-262 1-192 (213)
62 PRK10070 glycine betaine trans 99.9 5.4E-25 1.2E-29 204.8 10.1 178 78-264 29-228 (400)
63 cd03226 ABC_cobalt_CbiO_domain 99.9 4E-25 8.8E-30 188.3 8.5 172 79-263 1-188 (205)
64 COG0411 LivG ABC-type branched 99.9 1.4E-25 3.1E-30 191.6 5.3 169 76-252 3-193 (250)
65 PRK13637 cbiO cobalt transport 99.9 5.9E-25 1.3E-29 196.9 9.5 182 77-263 2-207 (287)
66 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4.7E-25 1E-29 191.9 8.6 178 77-263 1-195 (236)
67 COG4181 Predicted ABC-type tra 99.9 1.7E-24 3.7E-29 175.8 11.0 180 77-261 6-207 (228)
68 cd03218 ABC_YhbG The ABC trans 99.9 5.1E-25 1.1E-29 191.0 8.4 176 78-262 1-194 (232)
69 PRK10908 cell division protein 99.9 4.9E-25 1.1E-29 190.0 8.2 177 78-263 2-199 (222)
70 PRK09536 btuD corrinoid ABC tr 99.9 4E-25 8.8E-30 205.8 8.2 178 76-263 2-201 (402)
71 cd03262 ABC_HisP_GlnQ_permease 99.9 3.8E-25 8.3E-30 189.3 7.4 176 78-262 1-196 (213)
72 PRK11264 putative amino-acid A 99.9 7.4E-25 1.6E-29 192.1 9.4 179 76-263 2-206 (250)
73 COG1134 TagH ABC-type polysacc 99.9 4E-25 8.7E-30 189.0 7.3 160 93-262 39-208 (249)
74 cd03296 ABC_CysA_sulfate_impor 99.9 5.9E-25 1.3E-29 191.7 8.4 178 77-263 2-199 (239)
75 PRK13650 cbiO cobalt transport 99.9 7E-25 1.5E-29 195.7 8.9 183 76-263 3-203 (279)
76 PRK11831 putative ABC transpor 99.9 7.5E-25 1.6E-29 194.4 8.8 178 76-262 6-205 (269)
77 PRK13539 cytochrome c biogenes 99.9 1.3E-24 2.9E-29 185.7 10.0 173 77-263 2-189 (207)
78 PRK13538 cytochrome c biogenes 99.9 8.9E-25 1.9E-29 186.2 8.9 172 77-261 1-189 (204)
79 cd03235 ABC_Metallic_Cations A 99.9 3.7E-25 8.1E-30 189.6 6.6 177 79-263 1-194 (213)
80 COG0410 LivF ABC-type branched 99.9 6.7E-25 1.5E-29 186.1 7.9 149 76-252 2-180 (237)
81 PRK13647 cbiO cobalt transport 99.9 8.4E-25 1.8E-29 194.6 8.7 180 76-263 3-200 (274)
82 cd03292 ABC_FtsE_transporter F 99.9 7.2E-25 1.6E-29 187.7 7.8 177 78-262 1-197 (214)
83 cd03257 ABC_NikE_OppD_transpor 99.9 1.4E-24 3.1E-29 187.5 9.7 184 77-263 1-208 (228)
84 cd03219 ABC_Mj1267_LivG_branch 99.9 7.1E-25 1.5E-29 190.6 7.9 177 78-263 1-205 (236)
85 PRK13634 cbiO cobalt transport 99.9 7.8E-25 1.7E-29 196.4 8.4 182 77-263 2-208 (290)
86 cd03264 ABC_drug_resistance_li 99.9 6.1E-25 1.3E-29 188.0 7.3 176 78-263 1-191 (211)
87 cd03268 ABC_BcrA_bacitracin_re 99.9 1E-24 2.2E-29 186.2 8.5 172 78-262 1-187 (208)
88 TIGR03608 L_ocin_972_ABC putat 99.9 8.3E-25 1.8E-29 186.3 8.0 174 80-262 1-195 (206)
89 TIGR03415 ABC_choXWV_ATP choli 99.9 1.2E-24 2.7E-29 201.2 9.5 174 82-264 29-228 (382)
90 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1E-24 2.3E-29 190.4 8.4 176 78-262 1-197 (242)
91 TIGR01186 proV glycine betaine 99.9 1E-24 2.2E-29 200.7 8.7 164 96-264 8-193 (363)
92 cd03246 ABCC_Protease_Secretio 99.9 1.1E-24 2.3E-29 181.2 8.0 149 78-262 1-157 (173)
93 COG3840 ThiQ ABC-type thiamine 99.9 1.7E-24 3.7E-29 177.3 8.9 169 78-264 2-193 (231)
94 cd03215 ABC_Carb_Monos_II This 99.9 7.5E-25 1.6E-29 183.6 7.0 151 76-261 3-164 (182)
95 PRK13638 cbiO cobalt transport 99.9 1E-24 2.3E-29 193.7 8.3 178 77-263 1-198 (271)
96 COG1123 ATPase components of v 99.9 1.2E-24 2.6E-29 205.5 9.1 188 76-263 4-217 (539)
97 cd03230 ABC_DR_subfamily_A Thi 99.9 4.6E-25 1E-29 183.4 5.5 148 78-262 1-156 (173)
98 cd03229 ABC_Class3 This class 99.9 4.6E-25 9.9E-30 184.2 5.5 153 78-262 1-162 (178)
99 COG4172 ABC-type uncharacteriz 99.9 1.9E-24 4.2E-29 195.4 9.9 219 38-261 233-487 (534)
100 PRK13643 cbiO cobalt transport 99.9 1.2E-24 2.5E-29 195.1 8.4 182 77-263 1-206 (288)
101 cd03256 ABC_PhnC_transporter A 99.9 1.5E-24 3.1E-29 189.1 8.7 177 78-263 1-207 (241)
102 TIGR01188 drrA daunorubicin re 99.9 1.1E-24 2.4E-29 196.5 8.0 161 96-262 8-185 (302)
103 PRK13652 cbiO cobalt transport 99.9 1.8E-24 4E-29 192.7 9.4 181 75-263 1-200 (277)
104 cd03260 ABC_PstB_phosphate_tra 99.9 1.6E-24 3.5E-29 187.4 8.7 175 78-262 1-201 (227)
105 PRK13641 cbiO cobalt transport 99.9 1.7E-24 3.6E-29 194.0 9.0 182 77-263 2-207 (287)
106 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.3E-24 2.8E-29 187.9 8.1 165 78-263 23-204 (224)
107 TIGR00972 3a0107s01c2 phosphat 99.9 1.7E-24 3.7E-29 189.6 8.9 175 78-262 2-204 (247)
108 TIGR02315 ABC_phnC phosphonate 99.9 1.2E-24 2.6E-29 189.9 7.8 177 78-263 2-208 (243)
109 PRK14247 phosphate ABC transpo 99.9 2.1E-24 4.5E-29 189.4 9.1 183 75-263 1-207 (250)
110 PRK11247 ssuB aliphatic sulfon 99.9 2.2E-24 4.7E-29 190.3 9.2 173 76-263 11-196 (257)
111 PRK10247 putative ABC transpor 99.9 3.9E-24 8.5E-29 185.0 10.6 176 76-263 6-200 (225)
112 PRK11124 artP arginine transpo 99.9 1.8E-24 3.9E-29 188.9 8.5 178 77-263 2-203 (242)
113 PRK10895 lipopolysaccharide AB 99.9 1.8E-24 3.8E-29 188.8 8.4 177 76-261 2-197 (241)
114 PRK13651 cobalt transporter AT 99.9 1.6E-24 3.4E-29 195.6 8.3 181 77-263 2-227 (305)
115 PRK09493 glnQ glutamine ABC tr 99.9 1.7E-24 3.6E-29 188.9 8.0 177 78-263 2-198 (240)
116 cd03228 ABCC_MRP_Like The MRP 99.9 1.8E-24 3.9E-29 179.5 7.8 149 78-262 1-156 (171)
117 cd03232 ABC_PDR_domain2 The pl 99.9 1.1E-24 2.3E-29 184.2 6.4 159 77-262 3-169 (192)
118 cd03247 ABCC_cytochrome_bd The 99.9 1.1E-24 2.5E-29 181.8 6.5 152 78-263 1-159 (178)
119 PRK11701 phnK phosphonate C-P 99.9 3.9E-24 8.5E-29 188.6 10.1 181 76-263 5-214 (258)
120 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.5E-24 5.4E-29 191.1 8.9 175 79-262 26-222 (269)
121 PRK13548 hmuV hemin importer A 99.9 2.6E-24 5.7E-29 189.8 8.8 177 77-262 2-202 (258)
122 TIGR03410 urea_trans_UrtE urea 99.9 1.7E-24 3.6E-29 187.6 7.4 174 78-263 1-194 (230)
123 PRK14242 phosphate transporter 99.9 4.4E-24 9.6E-29 187.6 10.1 182 75-263 4-210 (253)
124 TIGR03411 urea_trans_UrtD urea 99.9 3.8E-24 8.3E-29 186.7 9.6 178 77-263 2-204 (242)
125 PRK13644 cbiO cobalt transport 99.9 2E-24 4.3E-29 192.3 7.9 178 78-263 2-198 (274)
126 TIGR02769 nickel_nikE nickel i 99.9 3.3E-24 7.1E-29 189.9 9.2 184 77-263 2-213 (265)
127 cd03224 ABC_TM1139_LivF_branch 99.9 1.4E-24 3.1E-29 186.9 6.7 174 78-262 1-193 (222)
128 PRK13635 cbiO cobalt transport 99.9 3E-24 6.6E-29 191.6 8.9 181 76-262 4-202 (279)
129 cd03216 ABC_Carb_Monos_I This 99.9 1.2E-24 2.7E-29 179.2 5.9 136 78-262 1-143 (163)
130 PRK14267 phosphate ABC transpo 99.9 4E-24 8.7E-29 187.9 9.3 180 75-263 2-210 (253)
131 cd03233 ABC_PDR_domain1 The pl 99.9 1.3E-24 2.8E-29 185.1 6.0 152 77-252 3-162 (202)
132 PRK10619 histidine/lysine/argi 99.9 3.4E-24 7.3E-29 188.9 8.7 179 76-263 4-214 (257)
133 PRK14241 phosphate transporter 99.9 4E-24 8.7E-29 188.5 9.2 182 76-263 3-209 (258)
134 TIGR02324 CP_lyasePhnL phospho 99.9 5.7E-24 1.2E-28 183.6 9.9 180 78-262 2-210 (224)
135 PRK13540 cytochrome c biogenes 99.9 3.5E-24 7.6E-29 182.0 8.4 161 78-252 2-171 (200)
136 PRK13543 cytochrome c biogenes 99.9 7.6E-24 1.7E-28 181.8 10.4 176 76-263 10-199 (214)
137 PRK13636 cbiO cobalt transport 99.9 3.8E-24 8.2E-29 191.3 8.7 180 76-263 4-204 (283)
138 PRK15112 antimicrobial peptide 99.9 4.8E-24 1E-28 189.1 9.2 185 76-263 3-212 (267)
139 cd03231 ABC_CcmA_heme_exporter 99.9 3.9E-24 8.5E-29 181.9 8.2 169 78-261 1-185 (201)
140 PRK14250 phosphate ABC transpo 99.9 4.4E-24 9.6E-29 186.5 8.7 174 76-263 2-194 (241)
141 PRK13646 cbiO cobalt transport 99.9 3.6E-24 7.9E-29 191.7 8.1 182 77-263 2-208 (286)
142 PRK13649 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 190.0 8.8 180 78-262 3-206 (280)
143 PRK11614 livF leucine/isoleuci 99.9 1.9E-24 4E-29 188.2 5.8 176 76-262 4-198 (237)
144 PRK14268 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 187.3 9.1 183 74-263 9-215 (258)
145 PRK09544 znuC high-affinity zi 99.9 1.2E-23 2.5E-28 185.1 10.8 170 76-263 3-183 (251)
146 PRK13632 cbiO cobalt transport 99.9 7.8E-24 1.7E-28 188.1 9.7 181 76-263 6-205 (271)
147 PRK13633 cobalt transporter AT 99.9 5.9E-24 1.3E-28 189.7 9.0 183 76-263 3-207 (280)
148 PRK10261 glutathione transport 99.9 5.3E-24 1.2E-28 209.2 9.4 186 75-263 10-231 (623)
149 TIGR02323 CP_lyasePhnK phospho 99.9 8.3E-24 1.8E-28 185.9 9.6 181 76-263 2-211 (253)
150 cd03223 ABCD_peroxisomal_ALDP 99.9 3.2E-24 7E-29 177.3 6.5 144 78-262 1-149 (166)
151 PRK13648 cbiO cobalt transport 99.9 8.9E-24 1.9E-28 187.5 9.8 182 76-263 6-205 (269)
152 TIGR01189 ccmA heme ABC export 99.9 7.9E-24 1.7E-28 179.5 9.0 172 78-262 1-188 (198)
153 cd03214 ABC_Iron-Siderophores_ 99.9 3.8E-24 8.3E-29 178.9 6.9 150 79-263 1-160 (180)
154 PRK10419 nikE nickel transport 99.9 9E-24 1.9E-28 187.4 9.5 186 75-263 1-214 (268)
155 PRK10744 pstB phosphate transp 99.9 8.9E-24 1.9E-28 186.6 9.2 183 74-263 10-217 (260)
156 PRK10418 nikD nickel transport 99.9 1.8E-23 4E-28 184.0 11.1 177 77-263 4-203 (254)
157 cd03267 ABC_NatA_like Similar 99.9 6.2E-24 1.3E-28 185.1 7.9 163 96-262 36-215 (236)
158 PRK13640 cbiO cobalt transport 99.9 8.9E-24 1.9E-28 188.8 9.1 180 77-263 5-206 (282)
159 PRK13631 cbiO cobalt transport 99.9 1.1E-23 2.3E-28 191.4 9.5 182 76-262 20-237 (320)
160 PRK14273 phosphate ABC transpo 99.9 1.2E-23 2.5E-28 185.1 9.5 179 75-263 5-211 (254)
161 TIGR01978 sufC FeS assembly AT 99.9 7.2E-24 1.6E-28 184.9 8.0 179 78-263 1-206 (243)
162 PRK10938 putative molybdenum t 99.9 1.7E-23 3.7E-28 200.4 11.3 174 77-262 3-196 (490)
163 PRK14259 phosphate ABC transpo 99.9 7.6E-24 1.6E-28 188.0 8.2 179 76-262 12-214 (269)
164 PRK13639 cbiO cobalt transport 99.9 8.8E-24 1.9E-28 188.2 8.4 179 77-263 1-199 (275)
165 cd03217 ABC_FeS_Assembly ABC-t 99.9 4.5E-24 9.8E-29 181.4 6.2 158 78-263 1-166 (200)
166 TIGR03005 ectoine_ehuA ectoine 99.9 7.7E-24 1.7E-28 186.0 7.7 177 78-263 1-209 (252)
167 PRK10575 iron-hydroxamate tran 99.9 2E-23 4.2E-28 184.9 10.3 179 75-262 9-209 (265)
168 COG2274 SunT ABC-type bacterio 99.9 7.8E-24 1.7E-28 208.5 8.3 161 76-261 470-668 (709)
169 cd03213 ABCG_EPDR ABCG transpo 99.9 4E-24 8.6E-29 181.0 5.5 160 77-262 3-172 (194)
170 TIGR01166 cbiO cobalt transpor 99.9 1.4E-23 2.9E-28 176.9 8.7 163 96-263 7-189 (190)
171 PRK10261 glutathione transport 99.9 1.3E-23 2.8E-28 206.4 9.9 185 76-263 312-526 (623)
172 PRK14235 phosphate transporter 99.9 2.1E-23 4.5E-28 185.0 10.2 181 75-262 17-223 (267)
173 PRK14237 phosphate transporter 99.9 2E-23 4.4E-28 185.1 10.0 184 72-262 15-223 (267)
174 PRK14270 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 183.2 10.0 180 76-262 3-207 (251)
175 TIGR02982 heterocyst_DevA ABC 99.9 1.3E-23 2.8E-28 181.0 8.5 181 77-262 1-203 (220)
176 PRK14256 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 182.8 10.4 182 76-263 3-209 (252)
177 cd03254 ABCC_Glucan_exporter_l 99.9 2.1E-23 4.4E-28 180.6 9.6 171 78-263 3-200 (229)
178 TIGR01277 thiQ thiamine ABC tr 99.9 1.7E-23 3.8E-28 179.4 9.1 174 78-262 1-190 (213)
179 PRK10762 D-ribose transporter 99.9 9.3E-24 2E-28 202.7 8.1 178 76-262 3-202 (501)
180 PRK11231 fecE iron-dicitrate t 99.9 1.1E-23 2.3E-28 185.5 7.8 177 77-262 2-199 (255)
181 KOG0058 Peptide exporter, ABC 99.9 1.2E-23 2.6E-28 202.1 8.7 153 76-252 464-648 (716)
182 PRK14262 phosphate ABC transpo 99.9 1.9E-23 4.2E-28 183.2 9.3 180 76-262 2-206 (250)
183 KOG2702 Predicted panthothenat 99.9 1.2E-23 2.7E-28 177.6 7.6 160 104-269 116-277 (323)
184 PRK14254 phosphate ABC transpo 99.9 2.2E-23 4.7E-28 186.6 9.5 179 76-262 38-240 (285)
185 PRK13541 cytochrome c biogenes 99.9 2.6E-23 5.7E-28 176.0 9.3 170 78-262 2-184 (195)
186 PRK14265 phosphate ABC transpo 99.9 1.2E-23 2.6E-28 187.2 7.6 184 71-262 14-221 (274)
187 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.5E-23 3.3E-28 179.3 7.9 175 78-263 1-191 (211)
188 TIGR03740 galliderm_ABC gallid 99.9 1.8E-23 3.9E-28 180.4 8.4 173 78-263 1-186 (223)
189 COG4161 ArtP ABC-type arginine 99.9 6.7E-23 1.4E-27 165.2 11.0 178 77-264 2-204 (242)
190 PRK11300 livG leucine/isoleuci 99.9 1.6E-23 3.5E-28 184.2 8.1 179 76-263 4-216 (255)
191 PRK14245 phosphate ABC transpo 99.9 2.6E-23 5.7E-28 182.5 9.4 181 76-263 2-207 (250)
192 PRK13549 xylose transporter AT 99.9 1.5E-23 3.2E-28 201.5 8.5 178 76-262 4-204 (506)
193 PRK13645 cbiO cobalt transport 99.9 1.5E-23 3.3E-28 187.9 8.0 182 76-262 5-212 (289)
194 PRK11144 modC molybdate transp 99.9 7.5E-24 1.6E-28 194.8 6.2 168 78-263 2-191 (352)
195 PRK15439 autoinducer 2 ABC tra 99.9 3.1E-23 6.6E-28 199.5 10.6 175 75-263 9-202 (510)
196 PRK14251 phosphate ABC transpo 99.9 2.4E-23 5.1E-28 182.8 8.9 181 76-263 3-208 (251)
197 COG1129 MglA ABC-type sugar tr 99.9 1.8E-23 3.9E-28 196.4 8.6 181 75-264 6-208 (500)
198 PRK15134 microcin C ABC transp 99.9 2.4E-23 5.3E-28 201.0 9.8 185 76-263 4-219 (529)
199 PRK14240 phosphate transporter 99.9 3.4E-23 7.5E-28 181.6 9.9 179 77-262 3-206 (250)
200 PRK09700 D-allose transporter 99.9 8.8E-24 1.9E-28 203.3 6.6 178 76-262 4-206 (510)
201 PRK10771 thiQ thiamine transpo 99.9 2.2E-23 4.7E-28 181.0 8.5 173 78-262 2-191 (232)
202 PRK13642 cbiO cobalt transport 99.9 2.8E-23 6E-28 185.2 9.3 181 77-263 4-203 (277)
203 PRK14253 phosphate ABC transpo 99.9 3.5E-23 7.5E-28 181.5 9.7 177 76-262 2-205 (249)
204 PRK14274 phosphate ABC transpo 99.9 4.1E-23 8.9E-28 182.2 10.1 180 76-262 11-215 (259)
205 TIGR03873 F420-0_ABC_ATP propo 99.9 1.6E-23 3.6E-28 184.4 7.5 176 78-262 2-198 (256)
206 COG4598 HisP ABC-type histidin 99.9 6.1E-23 1.3E-27 168.0 10.1 157 75-252 4-196 (256)
207 PRK14239 phosphate transporter 99.9 3.8E-23 8.2E-28 181.5 9.6 179 76-262 4-208 (252)
208 PRK13546 teichoic acids export 99.9 3.4E-23 7.3E-28 183.4 9.2 158 94-262 37-204 (264)
209 PRK10253 iron-enterobactin tra 99.9 4.3E-23 9.3E-28 182.7 9.8 179 75-262 5-205 (265)
210 cd03252 ABCC_Hemolysin The ABC 99.9 2.7E-23 5.9E-28 180.8 8.4 172 78-263 1-199 (237)
211 PRK14269 phosphate ABC transpo 99.9 3.7E-23 8.1E-28 181.1 9.3 179 77-262 2-202 (246)
212 COG3845 ABC-type uncharacteriz 99.9 2.9E-23 6.3E-28 192.1 8.7 180 75-264 2-203 (501)
213 PRK14248 phosphate ABC transpo 99.9 5.3E-23 1.2E-27 182.4 9.9 180 76-262 20-224 (268)
214 PRK09984 phosphonate/organopho 99.9 3.8E-23 8.2E-28 182.7 8.9 178 76-262 3-214 (262)
215 cd03251 ABCC_MsbA MsbA is an e 99.9 2.7E-23 5.9E-28 180.4 7.7 171 78-262 1-198 (234)
216 cd03248 ABCC_TAP TAP, the Tran 99.9 9E-23 1.9E-27 176.3 10.8 178 74-263 8-211 (226)
217 PRK15056 manganese/iron transp 99.9 3.7E-23 7.9E-28 183.9 8.4 180 77-262 6-203 (272)
218 PRK14260 phosphate ABC transpo 99.9 6.3E-23 1.4E-27 181.0 9.5 182 75-263 5-211 (259)
219 cd03244 ABCC_MRP_domain2 Domai 99.9 8E-23 1.7E-27 176.0 9.9 170 78-262 3-199 (221)
220 PRK14249 phosphate ABC transpo 99.9 6.8E-23 1.5E-27 179.9 9.5 177 76-262 3-207 (251)
221 PRK14275 phosphate ABC transpo 99.9 5.3E-23 1.1E-27 184.2 8.9 182 75-263 37-243 (286)
222 PRK14272 phosphate ABC transpo 99.9 8.2E-23 1.8E-27 179.4 9.8 177 77-262 4-208 (252)
223 PRK14243 phosphate transporter 99.9 8.7E-23 1.9E-27 180.7 10.0 179 76-262 9-211 (264)
224 cd03245 ABCC_bacteriocin_expor 99.9 7.8E-23 1.7E-27 175.9 9.3 172 78-263 3-201 (220)
225 PRK14238 phosphate transporter 99.9 6.8E-23 1.5E-27 182.1 8.8 181 76-263 23-228 (271)
226 PRK13545 tagH teichoic acids e 99.9 5.2E-23 1.1E-27 195.1 8.5 169 76-262 20-204 (549)
227 PRK14236 phosphate transporter 99.9 1.2E-22 2.5E-27 180.7 10.2 191 66-263 14-229 (272)
228 KOG0055 Multidrug/pheromone ex 99.9 7E-23 1.5E-27 206.6 9.9 161 77-261 350-548 (1228)
229 TIGR00968 3a0106s01 sulfate AB 99.9 4.1E-23 8.9E-28 179.9 7.1 176 78-262 1-192 (237)
230 PRK14246 phosphate ABC transpo 99.9 9.9E-23 2.1E-27 179.7 9.6 179 75-262 8-213 (257)
231 PRK11288 araG L-arabinose tran 99.9 4.5E-23 9.7E-28 198.0 8.0 179 76-263 3-202 (501)
232 PRK09580 sufC cysteine desulfu 99.9 1E-22 2.2E-27 178.3 9.5 178 78-262 2-206 (248)
233 TIGR03269 met_CoM_red_A2 methy 99.9 4.4E-23 9.6E-28 198.8 8.0 178 78-263 1-231 (520)
234 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3E-23 6.4E-28 167.7 5.5 125 78-263 1-129 (144)
235 PRK14261 phosphate ABC transpo 99.9 1.1E-22 2.5E-27 178.7 9.6 181 75-262 4-209 (253)
236 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.1E-22 2.4E-27 177.1 9.2 172 78-262 1-199 (238)
237 COG4619 ABC-type uncharacteriz 99.9 1.6E-22 3.4E-27 163.9 9.4 166 78-264 4-197 (223)
238 COG1119 ModF ABC-type molybden 99.9 1.5E-22 3.2E-27 173.2 9.7 182 74-264 28-236 (257)
239 PRK14258 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 179.2 9.7 178 75-262 5-212 (261)
240 cd03300 ABC_PotA_N PotA is an 99.9 8.1E-23 1.8E-27 177.5 8.1 166 78-252 1-174 (232)
241 PRK11819 putative ABC transpor 99.9 1.5E-22 3.2E-27 196.6 10.8 174 76-262 5-221 (556)
242 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.1E-22 6.7E-27 170.8 11.5 168 76-263 5-186 (207)
243 CHL00131 ycf16 sulfate ABC tra 99.9 1.5E-22 3.3E-27 177.7 9.8 181 76-263 6-213 (252)
244 PRK13547 hmuV hemin importer A 99.9 7E-23 1.5E-27 182.1 7.5 176 78-262 2-216 (272)
245 PRK14255 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 177.3 9.8 180 76-263 4-209 (252)
246 PRK14266 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 177.1 9.5 180 76-262 2-206 (250)
247 cd03234 ABCG_White The White s 99.9 2.1E-22 4.5E-27 174.2 9.8 183 77-261 3-203 (226)
248 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-22 2.4E-27 174.5 7.9 168 82-263 5-194 (214)
249 COG4586 ABC-type uncharacteriz 99.9 1.4E-22 3.1E-27 175.3 8.4 143 93-252 36-200 (325)
250 cd03299 ABC_ModC_like Archeal 99.9 1.3E-22 2.9E-27 176.5 8.3 175 78-262 1-191 (235)
251 TIGR02633 xylG D-xylose ABC tr 99.9 8.7E-23 1.9E-27 195.9 7.8 178 77-263 1-203 (500)
252 PRK14271 phosphate ABC transpo 99.9 1.6E-22 3.4E-27 180.3 8.9 178 76-263 20-224 (276)
253 PRK13549 xylose transporter AT 99.9 1.4E-22 3.1E-27 194.7 9.2 184 76-263 258-467 (506)
254 TIGR02142 modC_ABC molybdenum 99.9 1.2E-22 2.7E-27 186.9 8.4 169 82-263 4-194 (354)
255 PRK15134 microcin C ABC transp 99.9 1.1E-22 2.3E-27 196.6 8.3 184 76-263 274-488 (529)
256 cd03253 ABCC_ATM1_transporter 99.9 1.5E-22 3.3E-27 175.9 8.4 170 78-262 1-197 (236)
257 TIGR02770 nickel_nikD nickel i 99.9 1.9E-22 4.1E-27 174.9 8.9 164 96-262 1-187 (230)
258 PRK15064 ABC transporter ATP-b 99.9 1.7E-22 3.6E-27 195.2 9.4 172 76-263 318-497 (530)
259 cd03250 ABCC_MRP_domain1 Domai 99.9 1.7E-22 3.7E-27 172.0 8.3 166 78-262 1-189 (204)
260 PRK09700 D-allose transporter 99.9 2.3E-22 5.1E-27 193.4 10.3 177 76-262 264-470 (510)
261 TIGR03269 met_CoM_red_A2 methy 99.9 1.6E-22 3.4E-27 195.0 9.1 182 76-263 278-490 (520)
262 PRK14264 phosphate ABC transpo 99.9 2.6E-22 5.6E-27 181.3 9.8 181 76-263 44-261 (305)
263 PRK11147 ABC transporter ATPas 99.9 2.9E-22 6.2E-27 197.4 10.9 174 76-262 2-214 (635)
264 TIGR01184 ntrCD nitrate transp 99.9 1.8E-22 3.9E-27 175.2 8.4 160 97-262 1-176 (230)
265 PRK14252 phosphate ABC transpo 99.9 3.4E-22 7.5E-27 176.9 10.3 180 74-263 13-222 (265)
266 PRK15064 ABC transporter ATP-b 99.9 2.3E-22 5E-27 194.3 9.5 172 78-262 2-213 (530)
267 TIGR02868 CydC thiol reductant 99.9 1.9E-22 4.1E-27 194.7 8.8 168 77-260 334-528 (529)
268 PRK10636 putative ABC transpor 99.9 2.4E-22 5.1E-27 197.9 9.6 171 76-262 311-488 (638)
269 PRK11819 putative ABC transpor 99.9 2.4E-22 5.2E-27 195.2 9.5 174 76-262 323-503 (556)
270 PRK10636 putative ABC transpor 99.9 3.1E-22 6.6E-27 197.1 10.1 172 77-262 1-207 (638)
271 COG4604 CeuD ABC-type enteroch 99.9 2.5E-22 5.5E-27 166.5 7.9 145 77-242 1-169 (252)
272 COG4167 SapF ABC-type antimicr 99.9 4.9E-22 1.1E-26 163.2 9.4 175 75-252 2-193 (267)
273 PRK10982 galactose/methyl gala 99.9 7.1E-23 1.5E-27 196.1 5.3 175 80-263 1-196 (491)
274 TIGR02633 xylG D-xylose ABC tr 99.9 2E-22 4.3E-27 193.4 8.4 181 76-262 256-464 (500)
275 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.9E-22 6.4E-27 194.4 9.3 174 76-262 321-501 (552)
276 KOG0057 Mitochondrial Fe/S clu 99.9 3.7E-22 8E-27 186.5 9.3 159 77-263 351-548 (591)
277 PRK14244 phosphate ABC transpo 99.9 4.1E-22 8.9E-27 175.0 8.9 178 78-262 6-209 (251)
278 COG4107 PhnK ABC-type phosphon 99.9 1.4E-21 3.1E-26 159.3 11.2 180 76-263 5-214 (258)
279 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.6E-22 1.4E-26 192.0 11.1 173 77-262 4-219 (552)
280 PRK10938 putative molybdenum t 99.9 4.1E-22 9E-27 190.8 9.2 182 75-264 258-465 (490)
281 PRK14263 phosphate ABC transpo 99.9 6.4E-22 1.4E-26 175.0 9.3 176 76-262 7-209 (261)
282 PRK11147 ABC transporter ATPas 99.9 5.5E-22 1.2E-26 195.4 9.6 174 76-262 318-498 (635)
283 TIGR01257 rim_protein retinal- 99.9 3.7E-22 8E-27 212.9 8.8 180 76-263 1936-2132(2272)
284 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.1E-22 6.6E-27 198.9 7.4 169 77-261 451-645 (686)
285 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.1E-22 8.8E-27 198.7 8.2 169 77-261 477-672 (710)
286 cd03289 ABCC_CFTR2 The CFTR su 99.9 4.8E-22 1E-26 176.9 7.3 170 78-263 3-199 (275)
287 TIGR01257 rim_protein retinal- 99.9 5.7E-22 1.2E-26 211.5 9.0 181 76-264 927-1123(2272)
288 TIGR03375 type_I_sec_LssB type 99.9 6.4E-22 1.4E-26 196.8 8.8 167 77-262 463-661 (694)
289 PRK10982 galactose/methyl gala 99.9 1E-21 2.2E-26 188.2 9.7 178 76-263 249-453 (491)
290 cd03288 ABCC_SUR2 The SUR doma 99.9 9.9E-22 2.2E-26 173.3 8.8 174 74-262 16-216 (257)
291 COG4133 CcmA ABC-type transpor 99.9 2.5E-21 5.3E-26 159.5 10.2 167 77-253 2-175 (209)
292 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-21 3E-26 168.1 9.2 169 79-263 2-204 (218)
293 cd03222 ABC_RNaseL_inhibitor T 99.9 5.9E-22 1.3E-26 165.3 6.3 121 81-262 4-133 (177)
294 PRK15177 Vi polysaccharide exp 99.9 7E-22 1.5E-26 169.7 6.9 153 96-263 2-165 (213)
295 TIGR02857 CydD thiol reductant 99.9 1E-21 2.2E-26 189.6 8.6 172 77-262 320-518 (529)
296 COG4778 PhnL ABC-type phosphon 99.9 4.6E-21 9.9E-26 155.7 10.8 172 77-254 4-198 (235)
297 COG4674 Uncharacterized ABC-ty 99.9 4E-22 8.6E-27 165.1 4.7 156 76-252 4-191 (249)
298 PRK03695 vitamin B12-transport 99.9 1.3E-21 2.7E-26 171.8 8.1 169 79-262 2-194 (248)
299 TIGR01193 bacteriocin_ABC ABC- 99.9 9.4E-22 2E-26 196.0 8.2 172 77-262 473-670 (708)
300 PRK14257 phosphate ABC transpo 99.9 1.7E-21 3.8E-26 177.5 9.3 183 76-263 79-286 (329)
301 COG4987 CydC ABC-type transpor 99.8 3.7E-21 8E-26 179.6 11.1 163 77-261 336-533 (573)
302 TIGR00958 3a01208 Conjugate Tr 99.8 1.2E-21 2.5E-26 195.3 7.6 172 77-262 478-675 (711)
303 PRK11160 cysteine/glutathione 99.8 1.5E-21 3.2E-26 190.3 8.2 171 76-261 337-534 (574)
304 PRK10535 macrolide transporter 99.8 3.6E-21 7.8E-26 189.9 10.2 182 76-262 3-205 (648)
305 PRK11288 araG L-arabinose tran 99.8 2.2E-21 4.8E-26 186.2 8.4 176 76-262 256-457 (501)
306 COG4559 ABC-type hemin transpo 99.8 2.2E-21 4.8E-26 162.6 7.1 149 77-252 1-185 (259)
307 PRK11176 lipid transporter ATP 99.8 7.5E-21 1.6E-25 185.6 12.0 170 77-261 341-539 (582)
308 PRK10790 putative multidrug tr 99.8 1.9E-21 4.1E-26 190.2 7.5 169 77-261 340-535 (592)
309 PRK13409 putative ATPase RIL; 99.8 4.6E-21 1E-25 186.8 10.1 168 76-263 339-516 (590)
310 PRK10522 multidrug transporter 99.8 5.6E-21 1.2E-25 185.3 10.6 159 77-261 322-510 (547)
311 PRK10762 D-ribose transporter 99.8 5.8E-21 1.3E-25 183.4 10.4 175 76-263 256-457 (501)
312 PLN03073 ABC transporter F fam 99.8 6.3E-21 1.4E-25 189.3 10.4 172 76-262 507-685 (718)
313 COG1132 MdlB ABC-type multidru 99.8 2.9E-21 6.4E-26 188.0 7.8 157 77-261 328-524 (567)
314 PRK15439 autoinducer 2 ABC tra 99.8 7.9E-21 1.7E-25 182.8 10.6 175 76-263 267-465 (510)
315 TIGR02203 MsbA_lipidA lipid A 99.8 3.7E-21 8.1E-26 187.2 8.4 170 77-261 330-528 (571)
316 TIGR01846 type_I_sec_HlyB type 99.8 4.1E-21 9E-26 191.0 8.9 170 77-262 455-653 (694)
317 cd03237 ABC_RNaseL_inhibitor_d 99.8 9.1E-21 2E-25 166.2 10.0 152 97-262 10-177 (246)
318 PLN03211 ABC transporter G-25; 99.8 7.1E-21 1.5E-25 187.7 10.0 174 79-262 70-267 (659)
319 TIGR01192 chvA glucan exporter 99.8 4.2E-21 9.2E-26 187.5 8.3 171 77-262 334-531 (585)
320 KOG0055 Multidrug/pheromone ex 99.8 7.2E-21 1.6E-25 192.2 10.1 161 77-261 987-1185(1228)
321 PRK13657 cyclic beta-1,2-gluca 99.8 4.8E-21 1E-25 187.3 8.6 170 77-261 334-530 (588)
322 cd03236 ABC_RNaseL_inhibitor_d 99.8 4.5E-21 9.8E-26 169.0 7.4 171 81-263 4-201 (255)
323 PRK11174 cysteine/glutathione 99.8 5.2E-21 1.1E-25 186.9 8.4 169 77-261 349-544 (588)
324 cd00267 ABC_ATPase ABC (ATP-bi 99.8 4.9E-21 1.1E-25 156.5 6.5 123 80-252 2-124 (157)
325 COG4172 ABC-type uncharacteriz 99.8 1.6E-20 3.5E-25 170.1 10.3 187 75-261 4-218 (534)
326 cd03291 ABCC_CFTR1 The CFTR su 99.8 3.2E-20 6.9E-25 165.8 11.7 164 74-262 36-220 (282)
327 PRK10789 putative multidrug tr 99.8 9.3E-21 2E-25 184.6 8.8 172 77-262 313-511 (569)
328 COG4148 ModC ABC-type molybdat 99.8 2.7E-21 5.9E-26 167.9 4.1 164 82-263 5-191 (352)
329 PTZ00265 multidrug resistance 99.8 1.5E-20 3.3E-25 198.5 10.5 179 77-263 382-642 (1466)
330 TIGR02204 MsbA_rel ABC transpo 99.8 1.2E-20 2.6E-25 183.9 8.9 172 76-261 336-535 (576)
331 COG0488 Uup ATPase components 99.8 2.6E-20 5.6E-25 178.3 10.9 175 75-261 1-210 (530)
332 TIGR01842 type_I_sec_PrtD type 99.8 1.3E-20 2.7E-25 182.7 8.7 171 77-262 316-515 (544)
333 TIGR01194 cyc_pep_trnsptr cycl 99.8 2.5E-20 5.5E-25 181.0 10.6 162 77-261 337-531 (555)
334 TIGR00954 3a01203 Peroxysomal 99.8 1.7E-20 3.7E-25 185.4 9.1 175 76-262 450-640 (659)
335 TIGR03771 anch_rpt_ABC anchore 99.8 2.9E-20 6.3E-25 160.6 8.9 158 102-262 1-174 (223)
336 COG0488 Uup ATPase components 99.8 3.6E-20 7.8E-25 177.3 10.3 171 75-261 319-496 (530)
337 PLN03073 ABC transporter F fam 99.8 1.4E-20 3E-25 186.9 7.3 171 74-262 174-402 (718)
338 COG0572 Udk Uridine kinase [Nu 99.8 6.8E-20 1.5E-24 155.6 10.3 141 105-269 6-146 (218)
339 PTZ00265 multidrug resistance 99.8 2.3E-20 5.1E-25 197.2 8.1 174 77-261 1165-1419(1466)
340 cd03238 ABC_UvrA The excision 99.8 4.3E-20 9.4E-25 153.9 8.1 132 94-263 8-151 (176)
341 TIGR00554 panK_bact pantothena 99.8 4.7E-20 1E-24 164.5 8.7 148 104-267 59-213 (290)
342 COG0396 sufC Cysteine desulfur 99.8 8E-20 1.7E-24 155.0 9.6 159 75-252 1-188 (251)
343 PRK13409 putative ATPase RIL; 99.8 1.5E-20 3.3E-25 183.2 5.3 169 82-263 78-273 (590)
344 COG4988 CydD ABC-type transpor 99.8 9.6E-20 2.1E-24 172.1 8.6 168 78-261 321-515 (559)
345 cd02025 PanK Pantothenate kina 99.8 1.4E-19 3E-24 156.2 8.5 140 109-264 1-142 (220)
346 PTZ00301 uridine kinase; Provi 99.8 2.9E-19 6.3E-24 152.9 9.9 142 108-269 4-145 (210)
347 PLN03130 ABC transporter C fam 99.8 8.7E-20 1.9E-24 194.4 8.1 170 77-262 1237-1434(1622)
348 PLN03232 ABC transporter C fam 99.8 6.3E-20 1.4E-24 194.9 6.9 170 77-261 1234-1430(1495)
349 COG1072 CoaA Panthothenate kin 99.8 1.9E-19 4.1E-24 156.6 8.6 144 104-263 79-223 (283)
350 COG1101 PhnK ABC-type uncharac 99.8 1.7E-19 3.7E-24 151.6 7.3 184 78-265 2-213 (263)
351 COG4136 ABC-type uncharacteriz 99.8 1.9E-19 4.2E-24 143.6 6.9 177 77-261 2-195 (213)
352 TIGR00956 3a01205 Pleiotropic 99.8 2.6E-19 5.7E-24 188.8 10.1 184 77-263 759-964 (1394)
353 PF00005 ABC_tran: ABC transpo 99.8 4.1E-20 8.8E-25 147.2 2.7 118 97-237 1-137 (137)
354 PTZ00243 ABC transporter; Prov 99.8 1.8E-19 3.9E-24 191.7 7.7 169 77-261 1308-1505(1560)
355 COG4618 ArpD ABC-type protease 99.8 5E-19 1.1E-23 164.4 9.2 157 71-252 328-516 (580)
356 TIGR00957 MRP_assoc_pro multi 99.8 2.7E-19 5.7E-24 190.4 7.5 169 77-261 1284-1480(1522)
357 KOG0056 Heavy metal exporter H 99.8 4.5E-19 9.9E-24 163.9 7.5 150 77-252 537-718 (790)
358 TIGR01187 potA spermidine/putr 99.7 1.4E-18 3E-23 158.3 6.9 147 112-263 1-163 (325)
359 cd03270 ABC_UvrA_I The excisio 99.7 5.2E-18 1.1E-22 147.0 9.7 168 94-263 8-201 (226)
360 TIGR00957 MRP_assoc_pro multi 99.7 2.7E-18 5.8E-23 182.9 9.3 165 77-262 636-823 (1522)
361 TIGR01271 CFTR_protein cystic 99.7 3.9E-18 8.5E-23 181.2 10.2 169 77-261 1217-1412(1490)
362 KOG0059 Lipid exporter ABCA1 a 99.7 4.9E-18 1.1E-22 172.6 10.4 177 76-261 563-757 (885)
363 TIGR00955 3a01204 The Eye Pigm 99.7 8.9E-18 1.9E-22 165.1 10.3 153 96-252 40-210 (617)
364 PRK05439 pantothenate kinase; 99.7 5.9E-18 1.3E-22 152.2 7.9 144 105-264 84-230 (311)
365 KOG0927 Predicted transporter 99.7 9.4E-18 2E-22 156.8 9.1 171 75-261 387-566 (614)
366 PLN03232 ABC transporter C fam 99.7 6.7E-18 1.4E-22 179.6 9.0 167 77-261 614-800 (1495)
367 PLN03130 ABC transporter C fam 99.7 2.3E-17 4.9E-22 176.1 12.0 166 77-261 614-800 (1622)
368 PLN03140 ABC transporter G fam 99.7 1.6E-17 3.4E-22 175.5 9.5 182 77-262 867-1080(1470)
369 TIGR01271 CFTR_protein cystic 99.7 1.2E-17 2.5E-22 177.6 8.3 148 96-262 441-609 (1490)
370 PLN03140 ABC transporter G fam 99.7 8.7E-17 1.9E-21 169.9 11.3 154 94-252 178-380 (1470)
371 TIGR00235 udk uridine kinase. 99.7 7.5E-17 1.6E-21 137.8 8.8 141 104-268 3-143 (207)
372 COG5265 ATM1 ABC-type transpor 99.7 5.9E-17 1.3E-21 147.7 8.4 149 77-252 262-443 (497)
373 KOG0061 Transporter, ABC super 99.7 1.1E-16 2.4E-21 156.7 10.5 171 78-252 26-214 (613)
374 PRK09270 nucleoside triphospha 99.7 1.5E-16 3.3E-21 138.0 9.2 145 104-268 30-178 (229)
375 TIGR00956 3a01205 Pleiotropic 99.7 1.3E-16 2.9E-21 168.5 10.4 157 94-252 74-253 (1394)
376 COG4615 PvdE ABC-type sideroph 99.7 2.8E-16 6.1E-21 142.4 10.8 145 76-246 321-486 (546)
377 PF00485 PRK: Phosphoribulokin 99.7 9.6E-18 2.1E-22 141.9 1.0 144 109-269 1-145 (194)
378 cd03278 ABC_SMC_barmotin Barmo 99.7 6.7E-17 1.5E-21 137.2 6.0 141 98-263 14-178 (197)
379 cd02023 UMPK Uridine monophosp 99.7 5.9E-16 1.3E-20 131.1 10.0 136 109-268 1-136 (198)
380 PRK05480 uridine/cytidine kina 99.6 8E-16 1.7E-20 131.5 10.7 140 105-268 4-143 (209)
381 PLN02318 phosphoribulokinase/u 99.6 3.3E-16 7E-21 149.7 8.8 133 105-269 63-195 (656)
382 PTZ00243 ABC transporter; Prov 99.6 3.8E-16 8.3E-21 166.4 9.8 149 96-262 675-843 (1560)
383 cd02028 UMPK_like Uridine mono 99.6 8.7E-16 1.9E-20 128.5 8.2 136 109-269 1-137 (179)
384 cd02024 NRK1 Nicotinamide ribo 99.6 1.2E-15 2.6E-20 128.2 8.7 136 109-269 1-149 (187)
385 COG4178 ABC-type uncharacteriz 99.6 2E-15 4.4E-20 144.9 10.8 164 76-261 391-572 (604)
386 PLN02348 phosphoribulokinase 99.6 1.3E-15 2.8E-20 140.0 8.7 149 105-268 47-200 (395)
387 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.4E-15 2.9E-20 132.8 6.4 49 204-252 154-206 (243)
388 KOG0054 Multidrug resistance-a 99.6 4.5E-15 9.8E-20 153.4 10.7 160 67-252 1129-1323(1381)
389 COG4170 SapD ABC-type antimicr 99.6 2.5E-15 5.3E-20 126.4 6.4 171 75-252 1-202 (330)
390 KOG0054 Multidrug resistance-a 99.6 9.7E-15 2.1E-19 150.9 10.0 166 76-260 517-702 (1381)
391 cd02026 PRK Phosphoribulokinas 99.5 1.8E-14 4E-19 128.1 9.7 129 109-268 1-133 (273)
392 KOG0066 eIF2-interacting prote 99.5 1.3E-14 2.8E-19 133.2 8.8 175 75-268 584-766 (807)
393 COG1245 Predicted ATPase, RNas 99.5 1.9E-14 4.1E-19 132.6 9.2 155 77-252 342-499 (591)
394 cd03271 ABC_UvrA_II The excisi 99.5 4.7E-14 1E-18 124.5 10.7 72 192-263 150-234 (261)
395 KOG2355 Predicted ABC-type tra 99.5 4.5E-14 9.7E-19 118.4 9.0 178 77-261 13-208 (291)
396 cd02029 PRK_like Phosphoribulo 99.5 7E-14 1.5E-18 122.6 10.6 144 109-269 1-159 (277)
397 cd03274 ABC_SMC4_euk Eukaryoti 99.5 3.6E-15 7.8E-20 128.0 1.4 164 78-261 6-190 (212)
398 PRK07429 phosphoribulokinase; 99.5 9.4E-14 2E-18 126.3 10.6 133 105-268 6-142 (327)
399 KOG0062 ATPase component of AB 99.5 4.5E-14 9.8E-19 131.7 8.6 167 77-261 80-255 (582)
400 COG4138 BtuD ABC-type cobalami 99.5 1.6E-13 3.4E-18 112.5 10.3 135 77-242 3-166 (248)
401 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.3E-14 5.1E-19 122.9 5.2 161 77-262 5-194 (213)
402 KOG0060 Long-chain acyl-CoA tr 99.5 2.4E-13 5.3E-18 128.3 11.7 177 76-261 432-625 (659)
403 KOG0927 Predicted transporter 99.5 6.9E-14 1.5E-18 131.1 7.5 158 76-252 74-265 (614)
404 cd03273 ABC_SMC2_euk Eukaryoti 99.5 7.1E-14 1.5E-18 122.8 6.8 152 107-261 25-229 (251)
405 PLN02796 D-glycerate 3-kinase 99.4 2.2E-13 4.7E-18 123.7 7.4 131 96-241 81-233 (347)
406 PRK15453 phosphoribulokinase; 99.4 1.3E-12 2.7E-17 115.5 11.5 149 106-269 4-165 (290)
407 cd03240 ABC_Rad50 The catalyti 99.4 7.2E-13 1.6E-17 113.1 9.2 60 203-262 110-184 (204)
408 cd03276 ABC_SMC6_euk Eukaryoti 99.4 2.9E-12 6.3E-17 108.9 12.3 136 96-251 11-156 (198)
409 PRK07667 uridine kinase; Provi 99.4 2E-12 4.3E-17 109.4 8.8 135 105-269 15-157 (193)
410 COG2401 ABC-type ATPase fused 99.4 1.6E-12 3.4E-17 118.9 8.4 159 79-251 379-550 (593)
411 KOG0065 Pleiotropic drug resis 99.4 1.5E-12 3.3E-17 132.7 8.6 166 92-261 802-989 (1391)
412 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.1E-12 4.5E-17 113.3 6.5 55 207-261 154-219 (247)
413 PRK00349 uvrA excinuclease ABC 99.3 9.2E-12 2E-16 126.6 11.5 73 191-263 810-895 (943)
414 PRK06696 uridine kinase; Valid 99.3 5.5E-12 1.2E-16 109.0 6.9 136 104-268 19-164 (223)
415 PLN03046 D-glycerate 3-kinase; 99.3 1E-11 2.2E-16 114.9 8.6 121 106-241 211-345 (460)
416 COG1129 MglA ABC-type sugar tr 99.3 2.8E-11 6E-16 114.5 10.5 163 75-263 261-463 (500)
417 cd03283 ABC_MutS-like MutS-lik 99.2 4.5E-12 9.9E-17 107.7 4.3 34 96-131 16-49 (199)
418 PRK00635 excinuclease ABC subu 99.2 3.4E-11 7.5E-16 127.9 10.5 71 193-263 791-874 (1809)
419 cd03280 ABC_MutS2 MutS2 homolo 99.2 1.3E-11 2.9E-16 104.8 5.6 109 97-247 17-129 (200)
420 TIGR00630 uvra excinuclease AB 99.2 4.7E-11 1E-15 121.3 10.5 72 192-263 809-893 (924)
421 KOG0062 ATPase component of AB 99.2 3.2E-11 6.9E-16 112.9 7.4 173 75-261 360-539 (582)
422 KOG0064 Peroxisomal long-chain 99.2 9.8E-11 2.1E-15 110.0 8.3 162 77-252 481-656 (728)
423 COG3845 ABC-type uncharacteriz 99.1 3.5E-10 7.7E-15 105.6 9.6 171 75-265 255-467 (501)
424 cd03282 ABC_MSH4_euk MutS4 hom 99.1 1.2E-10 2.6E-15 99.3 5.5 125 96-262 18-152 (204)
425 cd03243 ABC_MutS_homologs The 99.1 1E-10 2.2E-15 99.5 4.2 33 99-131 21-53 (202)
426 COG1245 Predicted ATPase, RNas 99.1 1.6E-10 3.4E-15 107.0 5.5 151 104-261 97-273 (591)
427 cd03239 ABC_SMC_head The struc 99.1 2E-10 4.2E-15 96.0 5.6 54 208-261 94-158 (178)
428 PRK06547 hypothetical protein; 99.0 8.4E-10 1.8E-14 91.7 8.8 120 104-269 12-136 (172)
429 COG4240 Predicted kinase [Gene 99.0 5.6E-10 1.2E-14 95.0 7.2 126 102-241 45-177 (300)
430 cd03227 ABC_Class2 ABC-type Cl 99.0 7.1E-10 1.5E-14 91.1 6.8 54 209-262 78-142 (162)
431 cd03277 ABC_SMC5_euk Eukaryoti 99.0 2.5E-09 5.4E-14 91.9 9.6 59 203-261 121-192 (213)
432 cd03285 ABC_MSH2_euk MutS2 hom 99.0 3.6E-10 7.9E-15 97.7 3.6 105 96-242 19-128 (222)
433 KOG0065 Pleiotropic drug resis 98.9 4.7E-09 1E-13 107.8 11.3 153 94-248 128-300 (1391)
434 cd00820 PEPCK_HprK Phosphoenol 98.9 8.5E-10 1.8E-14 84.2 3.8 34 95-128 3-36 (107)
435 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.7E-10 1.4E-14 104.5 3.3 51 96-164 21-71 (504)
436 PRK08233 hypothetical protein; 98.9 7.7E-09 1.7E-13 85.8 8.9 113 106-268 2-115 (182)
437 KOG0063 RNAse L inhibitor, ABC 98.9 2.6E-09 5.7E-14 98.3 5.4 137 98-252 353-500 (592)
438 KOG0066 eIF2-interacting prote 98.8 1.2E-08 2.6E-13 94.4 8.2 165 78-261 265-469 (807)
439 cd03241 ABC_RecN RecN ATPase i 98.8 8.1E-09 1.8E-13 92.1 6.6 55 208-262 170-234 (276)
440 cd03284 ABC_MutS1 MutS1 homolo 98.8 5.9E-09 1.3E-13 89.8 3.8 35 96-131 20-54 (216)
441 TIGR02858 spore_III_AA stage I 98.7 1.8E-08 3.8E-13 89.5 4.9 38 108-162 112-149 (270)
442 cd03287 ABC_MSH3_euk MutS3 hom 98.6 6.8E-08 1.5E-12 83.5 6.9 35 96-130 20-54 (222)
443 TIGR01069 mutS2 MutS2 family p 98.6 3.4E-08 7.4E-13 99.3 5.4 109 100-247 314-423 (771)
444 PRK00635 excinuclease ABC subu 98.6 1.4E-07 3E-12 101.0 9.9 73 191-263 1679-1764(1809)
445 cd03281 ABC_MSH5_euk MutS5 hom 98.6 7.2E-08 1.6E-12 82.8 5.6 33 98-130 20-52 (213)
446 cd03242 ABC_RecF RecF is a rec 98.5 4.6E-07 1E-11 80.5 9.1 54 208-261 183-247 (270)
447 KOG3308 Uncharacterized protei 98.5 3.6E-07 7.8E-12 76.6 7.3 133 108-269 5-146 (225)
448 cd01130 VirB11-like_ATPase Typ 98.5 1.2E-07 2.5E-12 79.7 4.0 39 99-140 17-55 (186)
449 COG0178 UvrA Excinuclease ATPa 98.5 1.4E-06 2.9E-11 86.2 11.7 58 206-263 820-887 (935)
450 smart00534 MUTSac ATPase domai 98.5 3E-08 6.5E-13 83.2 0.1 37 206-243 59-95 (185)
451 PF02463 SMC_N: RecF/RecN/SMC 98.5 2E-07 4.4E-12 80.0 5.3 46 207-252 135-184 (220)
452 PRK08533 flagellar accessory p 98.5 3.7E-07 8E-12 79.3 6.7 42 78-132 8-50 (230)
453 PRK10078 ribose 1,5-bisphospho 98.4 4.2E-07 9.2E-12 76.2 6.0 25 107-131 2-26 (186)
454 PRK06995 flhF flagellar biosyn 98.4 7.8E-07 1.7E-11 84.8 8.4 73 94-183 243-315 (484)
455 PF13555 AAA_29: P-loop contai 98.4 3.7E-07 8.1E-12 62.6 4.5 35 97-131 12-47 (62)
456 PRK14721 flhF flagellar biosyn 98.4 1.4E-06 3.1E-11 81.7 8.7 95 104-217 188-284 (420)
457 PRK06002 fliI flagellum-specif 98.3 4.6E-07 9.9E-12 85.4 4.6 53 75-131 137-189 (450)
458 KOG4203 Armadillo/beta-Catenin 98.3 6E-07 1.3E-11 85.5 5.1 150 103-269 40-192 (473)
459 PRK09825 idnK D-gluconate kina 98.3 2.1E-06 4.5E-11 71.6 7.7 26 106-131 2-27 (176)
460 cd02019 NK Nucleoside/nucleoti 98.3 1.9E-06 4.2E-11 60.5 5.9 23 109-131 1-23 (69)
461 KOG2878 Predicted kinase [Gene 98.3 1.5E-06 3.2E-11 73.0 6.1 124 107-241 31-166 (282)
462 PRK13477 bifunctional pantoate 98.3 1.8E-06 3.9E-11 83.0 7.4 37 94-131 272-308 (512)
463 TIGR00767 rho transcription te 98.3 8.2E-07 1.8E-11 82.4 4.3 53 77-132 130-193 (415)
464 cd03286 ABC_MSH6_euk MutS6 hom 98.3 2E-06 4.3E-11 74.2 6.3 36 96-131 19-54 (218)
465 PRK07196 fliI flagellum-specif 98.2 9.7E-07 2.1E-11 83.1 3.9 38 94-132 143-180 (434)
466 PTZ00132 GTP-binding nuclear p 98.2 9.9E-07 2.2E-11 75.4 3.2 42 213-254 157-203 (215)
467 PRK00409 recombination and DNA 98.2 1.1E-06 2.4E-11 88.7 3.3 42 205-247 387-428 (782)
468 PRK06793 fliI flagellum-specif 98.2 2.6E-06 5.7E-11 80.1 5.4 129 77-250 130-268 (432)
469 cd01128 rho_factor Transcripti 98.2 1.5E-05 3.3E-10 70.1 9.8 34 99-132 8-41 (249)
470 cd01136 ATPase_flagellum-secre 98.1 2.2E-06 4.9E-11 77.9 4.5 38 94-132 57-94 (326)
471 PRK00300 gmk guanylate kinase; 98.1 2.2E-06 4.7E-11 72.7 3.8 27 105-131 3-29 (205)
472 PRK07594 type III secretion sy 98.1 2.1E-06 4.5E-11 80.9 4.0 53 76-132 128-180 (433)
473 smart00382 AAA ATPases associa 98.1 1.4E-05 3E-10 61.7 7.9 27 106-132 1-27 (148)
474 PRK07721 fliI flagellum-specif 98.1 2.6E-06 5.6E-11 80.6 4.3 37 94-131 146-182 (438)
475 PRK14723 flhF flagellar biosyn 98.1 4.9E-06 1.1E-10 83.0 6.4 90 94-200 172-263 (767)
476 PRK08149 ATP synthase SpaL; Va 98.1 2.6E-06 5.7E-11 80.1 4.2 37 94-131 139-175 (428)
477 TIGR03015 pepcterm_ATPase puta 98.1 3.1E-05 6.6E-10 68.2 10.0 36 96-131 31-67 (269)
478 TIGR00455 apsK adenylylsulfate 98.1 5.2E-05 1.1E-09 63.3 10.8 30 103-132 14-43 (184)
479 TIGR02322 phosphon_PhnN phosph 98.0 3.9E-06 8.4E-11 69.6 3.8 25 107-131 1-25 (179)
480 PRK08118 topology modulation p 98.0 8.8E-06 1.9E-10 67.2 5.8 24 109-132 3-26 (167)
481 PRK09862 putative ATP-dependen 98.0 3.1E-06 6.8E-11 81.3 3.1 54 80-140 187-240 (506)
482 TIGR02546 III_secr_ATP type II 98.0 5.6E-06 1.2E-10 78.1 4.5 37 94-131 133-169 (422)
483 TIGR03263 guanyl_kin guanylate 98.0 3.9E-06 8.5E-11 69.6 3.0 25 107-131 1-25 (180)
484 KOG0063 RNAse L inhibitor, ABC 98.0 7.2E-06 1.6E-10 76.1 5.0 61 203-263 208-275 (592)
485 TIGR02788 VirB11 P-type DNA tr 98.0 4.9E-06 1.1E-10 75.4 3.6 32 100-131 137-168 (308)
486 PRK09099 type III secretion sy 98.0 6.6E-06 1.4E-10 77.7 4.5 37 94-131 151-187 (441)
487 TIGR01026 fliI_yscN ATPase Fli 98.0 6.2E-06 1.3E-10 78.1 4.0 37 94-131 151-187 (440)
488 PRK03846 adenylylsulfate kinas 98.0 9.3E-06 2E-10 68.8 4.6 28 104-131 21-48 (198)
489 PRK14730 coaE dephospho-CoA ki 98.0 3.1E-06 6.6E-11 71.7 1.6 37 227-268 107-143 (195)
490 PRK08972 fliI flagellum-specif 97.9 8.5E-06 1.8E-10 76.7 4.4 37 94-131 150-186 (444)
491 PRK10416 signal recognition pa 97.9 1.2E-05 2.6E-10 73.2 5.2 28 105-132 112-139 (318)
492 PF13207 AAA_17: AAA domain; P 97.9 8.6E-06 1.9E-10 62.9 3.6 23 109-131 1-23 (121)
493 TIGR00750 lao LAO/AO transport 97.9 1.4E-05 3.1E-10 72.1 5.4 37 96-132 23-59 (300)
494 TIGR03497 FliI_clade2 flagella 97.9 9.7E-06 2.1E-10 76.2 4.4 37 94-131 125-161 (413)
495 cd02022 DPCK Dephospho-coenzym 97.9 3.6E-06 7.8E-11 70.2 1.3 36 228-268 104-139 (179)
496 PRK05922 type III secretion sy 97.9 1.2E-05 2.6E-10 75.8 4.9 37 94-131 145-181 (434)
497 PRK00889 adenylylsulfate kinas 97.9 1.4E-05 3E-10 66.2 4.7 28 105-132 2-29 (175)
498 TIGR03498 FliI_clade3 flagella 97.9 8.5E-06 1.8E-10 76.6 3.8 38 94-132 128-165 (418)
499 PRK06731 flhF flagellar biosyn 97.9 3.9E-05 8.5E-10 68.2 7.3 53 78-132 41-100 (270)
500 PF13476 AAA_23: AAA domain; P 97.9 1.1E-05 2.5E-10 67.2 3.7 36 96-132 9-44 (202)
No 1
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.5e-33 Score=236.90 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=146.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC---CCCCc
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV---KPPDV 151 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~---~~p~~ 151 (270)
..++++++++.|+... +|+|+||+|.+||+|+|+||||||||||+|+|+|+.+ |++|++ +++.. ..|+.
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4688999999999843 8899999999999999999999999999999999996 999984 44432 24455
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
+. ++++..- .+++++.+|........|...........+.++.+++. ++.|+.++||||+||++++++++.++++
T Consensus 75 ~~-vFQ~~~L--lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 75 GY-VFQEDAL--LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EE-EeccCcc--cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 55 6665543 34578888888877777665554556778889988885 5789999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
|++||||..||+-++..+.+.+- ..++||||.++++
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 99999999999966666655544 3499999998875
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-32 Score=229.45 Aligned_cols=159 Identities=20% Similarity=0.253 Sum_probs=130.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
+++++||+|.|+..+ +|++||++|++||+++|+||||||||||+|||+++. .|+.|. |.
T Consensus 2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE----------------~~~~G~-I~ 60 (240)
T COG1126 2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE----------------EPDSGS-IT 60 (240)
T ss_pred eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc----------------CCCCce-EE
Confidence 689999999999866 789999999999999999999999999999999997 677787 88
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------------------------C--CCcCCC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--------------------------Q--GSVYAP 207 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--------------------------~--~~~~~~ 207 (270)
+||..+... .+....++..|+ +++|++.+-+++++|+.+ . .+.|+.
T Consensus 61 i~g~~~~~~-----~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 61 VDGEDVGDK-----KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred ECCEeccch-----hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc
Confidence 888644321 144456667777 677777666777776653 2 356888
Q ss_pred CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
++||||+||++++++++.+|++++.|||++.|||+...++.+.+. ..+-|||..
T Consensus 136 qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 999999999999999999999999999999999988888887776 336666654
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=229.61 Aligned_cols=180 Identities=15% Similarity=0.160 Sum_probs=140.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
+++++||+|.|++.. +++|+||+|++||++.++|||||||||++|+|.+++. |++|++ +++...
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 478999999999755 7899999999999999999999999999999999994 666662 222110
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhh
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l 223 (270)
+-..|.++..-|.+ +++++.+|....-...|...+....+..++++.+++. .+.|+.++||||+||+..++++
T Consensus 74 Rr~IGYviQqigLF---Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 74 RRKIGYVIQQIGLF---PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHhhhhhhhhcccC---CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 11234444444432 3466666666666666665554556667788888775 3578889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchhh
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYFN 266 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~~ 266 (270)
+.+|++|++||||..+|+..++.+.+.+. ..||||||.|+++.
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 99999999999999999988888877766 44999999998863
No 4
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=9.9e-32 Score=243.52 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=143.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC---CCC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV---KPP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~---~~p- 149 (270)
++.++++||+|.|++.. +++|+||+|++||+++|+|||||||||++|+|+|+.. |++|++ +++.. .+|
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 35799999999999644 8899999999999999999999999999999999995 888884 34321 222
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
..|. +++ +|.++ +++++.+|..+..+..+. .......++.++++.+++. .+.++.++||||+||++++++++
T Consensus 76 kR~ig~-VFQ-~YALF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 76 KRPIGM-VFQ-SYALF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hcccce-eec-CcccC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 2333 443 44444 568999998887774443 3333445778888888776 46788899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
.+|++|++|||+..||...+++++..++ ..||||||.++++
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl 201 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL 201 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 9999999999999999977766666555 3499999998876
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.8e-31 Score=238.54 Aligned_cols=183 Identities=18% Similarity=0.203 Sum_probs=149.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
|..++++||+|.|++.. +++++|++|+.||+++|+||||||||||||+|+|+.. |++|++ +++..+ +|
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45689999999999843 6799999999999999999999999999999999996 889984 444311 22
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
+++...-+.+|.++ +++++.+|..+..+..+.+.+....++.++.+.+.... +.++.++||||+||+++++++..+|
T Consensus 74 ~R~iamVFQ~yALy-PhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 74 KRGIAMVFQNYALY-PHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred HCCEEEEeCCcccc-CCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 23322333344444 56899999999998888887777788889988888764 6778899999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
+++++|||+.-||...+..++..+. ..||||||+.+++
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAm 198 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHH
Confidence 9999999999999977766666655 3499999997775
No 6
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=221.38 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=145.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|+.......++++|||+|.+||++||+|+||||||||+++|+|+.+ |+.|++ +++....
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccch
Confidence 579999999999876555568899999999999999999999999999999999997 999994 6663222
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhh
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l 223 (270)
-...++|++|.+.-.++..++.+...+.....|+... .....++++.+++.. +.++.+|||||+||+++++++
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence 2356779999987777666665544444444444322 233778889998875 568889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~ 261 (270)
..+|++||+|||+..||...+.++.+++. ..+||+||.
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 99999999999999999988888877776 237888876
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.1e-30 Score=220.64 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=126.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCC-CC--------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-------- 147 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~-~~-------- 147 (270)
++++||+|.|......+.+|+++||+|++||+|+|+||||||||||+++|.|+.+ |++|. .+++. ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHH
Confidence 5689999999765444778999999999999999999999999999999999995 55555 22221 00
Q ss_pred ---CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--C-cCCCCCCcccCChhhhhh
Q 024225 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 148 ---~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~-~~~~~~S~g~~~rv~~~~ 221 (270)
.-..|. |+++-..++. +++.+|........+............+++.++++. . .++.++||||+||+++++
T Consensus 79 ~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 79 KLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 111232 4443333222 455555544333333322112233445555555553 2 446699999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+++.+|++|+.|||+.-||....+.+.+++. ..|.||||.+.+
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA 206 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA 206 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 9999999999999999999987777777776 238888887554
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.5e-29 Score=215.22 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=120.1
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC-----
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK----- 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~----- 147 (270)
.+++++++|++.|++.. +++|++|+|++||+++|+||||||||||+|+|.|+++ |++|++ +++. ..
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 46799999999999854 6799999999999999999999999999999999994 555442 1111 00
Q ss_pred -----CCCceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (270)
Q Consensus 148 -----~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~ 218 (270)
....| ++++.|--.. .+++++|..+..+.+. .+...-.+....-++.+++. .+.++.++||||++|++
T Consensus 79 ~~~~ir~r~G-vlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 79 ELYEIRKRMG-VLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHHhhee-EEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 00112 1333332111 1444444443222221 12221112222234444443 35688899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++++++.+|++|++|||+.++|+.....+.+++. ..+-||||.++.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL 209 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence 9999999999999999999999965555555544 347788887553
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.3e-29 Score=216.77 Aligned_cols=179 Identities=17% Similarity=0.256 Sum_probs=138.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC------C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ------V--- 146 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~------~--- 146 (270)
.++++++++.|+... +++||+++|+.||.+||+||||||||||+|+|+|+.. |+.|.+ +++. .
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 478899999999866 8899999999999999999999999999999999995 888873 3332 1
Q ss_pred CCCCceEEeecCCCCccccccCcccChHHHHHhcCC-C-CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 147 ~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~-~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~ 222 (270)
..-..|. +.+ .|.++ +++++.+|..+..+.... + .......+.++++.+.++ .+.|+.++||||+||++++++
T Consensus 75 ~~R~VGf-vFQ-~YALF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 75 RDRKVGF-VFQ-HYALF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhcceeE-EEe-chhhc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 1112333 333 34433 447888877776544422 2 233445566777766665 478889999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
++..|++|++|||+..||...+++++..+. ..+|||||.++++
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~ 202 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence 999999999999999999988777777666 4599999997765
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=3.7e-28 Score=199.95 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=139.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QV-------- 146 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~-------- 146 (270)
+++++||+|.|++.+ .+|+||||+|++||++-|+||||||||||+|+|.+..+ |++|++ +.+ +.
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 478999999998753 37899999999999999999999999999999999996 888884 222 11
Q ss_pred --CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 147 --~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
.+-..|. +++|-.-+.+ .++.+|..+..+..|.+......++.++++.+++.. ...++++|+|++||++++.+
T Consensus 75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 1223454 7777665554 678888888888888876666677888898888875 45778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~ 253 (270)
+...|++||.|||+.-+|++...++-.++.+
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999888884
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.5e-28 Score=213.53 Aligned_cols=170 Identities=17% Similarity=0.191 Sum_probs=128.7
Q ss_pred eEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------- 146 (270)
Q Consensus 77 ~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------- 146 (270)
++++++|+|.|... ...+.+++||||+|++|+|+||+|.||||||||+|+|.++-+ |++|++ .++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 47899999999873 334778999999999999999999999999999999999984 666663 23210
Q ss_pred ---CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 147 ---KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 147 ---~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
.+...|. |++. |.+. ...++.+|..+..+..|.+......++.++++.+++.. +.|+.++||||||||++++
T Consensus 78 Lr~~R~~IGM-IFQh-FnLL-ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 78 LRQLRQKIGM-IFQH-FNLL-SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHHhhccE-Eecc-cccc-ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 0112332 3322 1111 12456666666666666655555566677777777663 5688899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+++.+|++|+.||+++.||+...+.+.+++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~ 185 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLK 185 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence 9999999999999999999998888888877
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.3e-28 Score=217.58 Aligned_cols=177 Identities=17% Similarity=0.194 Sum_probs=141.3
Q ss_pred cceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CCC----
Q 024225 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QVK---- 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~~---- 147 (270)
+..++++||+|.|+ ... +|+||||++++|+++||+||||||||||+|+|+|+++ |++|++ +.+ +..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 45688999999999 444 8899999999999999999999999999999999997 899994 333 211
Q ss_pred --CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 148 --~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....|. +..+.... +.+++.++.++....++.....+...+.++++.+++.. +..+..||+||+||+.++.++
T Consensus 75 ~~~~~igy-~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGY-VPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEE-EccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 112344 66555533 34899998888888887654445667889999999986 566889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc----c---ceEEeccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E---KCYATSFK 261 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~---~i~v~~~~ 261 (270)
..+|+++|+|||+.+||+..+.++.+++. + .|+++++.
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~ 196 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI 196 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence 99999999999999999966666665555 2 46666665
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.6e-28 Score=209.24 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=133.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-C---CCC
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-V---KPP 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~---~~p 149 (270)
+++++++|+++.|++.. +|+||||++++|++++|+||||||||||+|.|+|+++ |.+|++ +.+. . .+.
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 46799999999998633 7899999999999999999999999999999999996 899994 2221 1 112
Q ss_pred CceEEeecCCCCccccccCcccChHHH-HHhcCC---CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~-~~~~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++++.-..-+...+++.+-.... ..+.|+ +...|.+.+.+.++.+++. .+..+.++||||+||+-+|+++
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 233346664322222224443322111 012222 2233557788899988886 4677889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+.+|+++++|||+.++|+.....+.+++++ .+-|+||..
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 999999999999999999888888888872 256667663
No 14
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=8.7e-28 Score=211.24 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=127.7
Q ss_pred ceEEeccchhhhhhhh--------------------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC
Q 024225 76 PVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~--------------------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~ 135 (270)
..++++||.|.|+... ..+..+.|+||+|+.|||..|+|-||||||||+|+|.+++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi---- 78 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI---- 78 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC----
Confidence 4588889998886432 1255678999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCceEEeecCCCCccc------------------------cccCcccChHHHHHhcCCCCCccHHHH
Q 024225 136 PQKASSFDSQVKPPDVATVLPMDGFHLYL------------------------SQLDAMEDPKEAHARRGAPWTFNPLLL 191 (270)
Q Consensus 136 ~~~G~~~~~~~~~p~~g~~i~~dg~~~~~------------------------~~l~~~~~~~~~~~~~g~~~~~~~~~~ 191 (270)
.|+.|. |.++|.++.. ++.++.+|..+..+..|++.....+..
T Consensus 79 ------------ept~G~-ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a 145 (386)
T COG4175 79 ------------EPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA 145 (386)
T ss_pred ------------CCCCce-EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHH
Confidence 566666 6666665543 223333444443344444333333344
Q ss_pred HHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225 192 LNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 192 ~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~ 261 (270)
.+.++.+++. .+.|+.++||||+||+.++++++.+++||++||+|+.|||-.+.++.+.+- ..+||+||.
T Consensus 146 ~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL 225 (386)
T COG4175 146 LEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL 225 (386)
T ss_pred HHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 4444444443 356788999999999999999999999999999999999966665555443 459999999
Q ss_pred cchhh
Q 024225 262 ETYFN 266 (270)
Q Consensus 262 ~~~~~ 266 (270)
|+++.
T Consensus 226 dEAlr 230 (386)
T COG4175 226 DEALR 230 (386)
T ss_pred HHHHh
Confidence 98863
No 15
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.7e-27 Score=224.81 Aligned_cols=213 Identities=16% Similarity=0.161 Sum_probs=161.7
Q ss_pred ccccccccccccccccccchhhccccC------------ccceEEeccchhhhhhh-------hcccccccccceecCCC
Q 024225 47 NAQPVFGKTRSLVQNKTSLKVLCSQQR------------EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVK 107 (270)
Q Consensus 47 ~~q~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~l~~~y~~~-------~~~v~~l~~isl~i~~g 107 (270)
.....|..+++.|++.+.-..+.-... ..++++++||+|.|... ...+.+++||||++.+|
T Consensus 238 ~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G 317 (539)
T COG1123 238 PTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317 (539)
T ss_pred CHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC
Confidence 456667777788777654443322110 34678999999999842 13477899999999999
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCCCC---------CCCceEEeecCCCCccccccCcccChHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~~~---------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~ 177 (270)
|++||+|+||||||||+|+|+|++. |+.|+ ++++... .-...+++++|.+.-.++.+++.+...+..
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 9999999999999999999999996 88888 4544321 012467789999888777777766555444
Q ss_pred HhcCC-CCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-
Q 024225 178 ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD- 252 (270)
Q Consensus 178 ~~~g~-~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~- 252 (270)
...+. ........+.++++.+++.. +.|+.+|||||+||++++.+++.+|++||+|||+..||...+..+.+++.
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 43332 22222345678899998875 57889999999999999999999999999999999999988888888877
Q ss_pred -------cceEEecccc
Q 024225 253 -------EKCYATSFKE 262 (270)
Q Consensus 253 -------~~i~v~~~~~ 262 (270)
..+||+||.+
T Consensus 475 lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 475 LQEELGLTYLFISHDLA 491 (539)
T ss_pred HHHHhCCEEEEEeCCHH
Confidence 2378888773
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.5e-27 Score=207.92 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=124.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++||++.|++.. +++|+||++++|++++|+||||||||||+|+|+|+++ |.+|++ .++....
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 588999999999644 6799999999999999999999999999999999995 666663 3332110
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHh-cCCC---CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~ 222 (270)
...-.++++..... ..+++.+.....+.- .+.. ...|.+.+...++.++.. ......++||||+||+.++.+
T Consensus 75 Ak~ia~vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 11122244433221 224454444332211 1221 222334456667777665 355678999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc----c----ceEEeccccch
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KCYATSFKETY 264 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~----~i~v~~~~~~~ 264 (270)
++.++++|++|||+..||...+-++-+++. + .|.|.||.+-+
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A 202 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA 202 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999999999999976666666655 2 37777776443
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1e-27 Score=199.10 Aligned_cols=176 Identities=17% Similarity=0.188 Sum_probs=129.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC-CC------CC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS-QV------KP 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~-~~------~~ 148 (270)
++++.+++|.|+.. +.+++||||+++.|+++||+|||||||||++|+|+.++. |++|++ .++ +. ++
T Consensus 1 Ml~v~~l~K~y~~~---v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSK---VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCH---HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 47889999999873 448899999999999999999999999999999999995 666663 222 11 11
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
...|. +. +...++ ..+++.++..+..+.+|+.......+..++.+.+.+.. +.+...||.|++|++++++++..+
T Consensus 75 r~IGV-l~-~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 75 RKIGV-LF-GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhcce-ec-CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 12232 22 222221 23666677766666666644333445556666666653 566789999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
|+++|+|||+.++|--.++.+.+++. ..||-+|..
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m 193 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH
Confidence 99999999999999877777777776 236666654
No 18
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=2e-27 Score=218.40 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=137.6
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
+.+++++||++.|++.. +|+++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .|
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998633 6799999999999999999999999999999999985 888884 444211 11
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....+++++. .++ +++++.++..+..+..+.........+.++++.+++.. +.++..+|+||+||+++++++..+
T Consensus 75 ~r~ig~v~Q~~-~lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSY-ALF-PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCc-ccC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1123355443 222 34777777766554444332223345677888877754 567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++++++|||+..+|...++.+.+.+. ..|||+|+.++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea 198 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA 198 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 99999999999999987777777665 249999998764
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-27 Score=217.92 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=134.3
Q ss_pred ceEEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
.+++++||++.| ++.. +|+++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .|
T Consensus 2 ~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 2 AGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred CEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 468999999999 5432 7799999999999999999999999999999999986 889984 444211 11
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....+++++.. ++ +++++.++..+..+..+.........+.++++.+++.. +.++..+|+||+||+++++++..+
T Consensus 75 ~r~ig~v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~ 152 (356)
T PRK11650 75 DRDIAMVFQNYA-LY-PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152 (356)
T ss_pred HCCEEEEeCCcc-cc-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 12333565543 22 34677777766544444332222345567777777653 567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
|+++++|||+..||...++.+.+.+. ..|||+||.++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 198 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA 198 (356)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999977776666554 248999998654
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.1e-27 Score=199.86 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=113.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
.+++++||++.|++.+ .+|++|||+|++||+|+|+||||||||||+|+|+|+.. ++.|++ +++...
T Consensus 2 ~~i~~~nl~k~yp~~~---~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 2 MMIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE 75 (258)
T ss_pred ceEEEeeeeeecCCCc---eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence 4699999999995432 27899999999999999999999999999999999873 555542 111000
Q ss_pred ----CCCceEEeecCCCCccccccCcccChH--------HHHHhcCCCCCccHHHHHHHHHhhccCCC--cCCCCCCccc
Q 024225 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGV 213 (270)
Q Consensus 148 ----~p~~g~~i~~dg~~~~~~~l~~~~~~~--------~~~~~~g~~~~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~ 213 (270)
+.+.|. |+++..-+.+ +++.+|.. ..+..+|++...+....+..++.++..+. .+...+||||
T Consensus 76 lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 76 LRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 112232 3333222222 22222221 11222333323333344455555555433 2355899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+||+++++++..++++|+-|||+..||+...+.+-+.+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~ 191 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHH
Confidence 999999999999999999999999999988888887776
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-27 Score=217.29 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=136.4
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP 149 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p 149 (270)
.+++++++||++.|++.. +++|+||++++||+++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 356899999999997633 6799999999999999999999999999999999996 888884 444211 11
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....+++++. .+ .+++++.++..+..+..+.........+.++++.+++. .+.++..+|+||+||+++++++..
T Consensus 76 ~~r~ig~vfQ~~-~l-fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 76 QQRDICMVFQSY-AL-FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHCCEEEEeCCc-cc-CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1222355443 22 23367777666554434433222234556777777665 356778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+|+++++|||+..||...++++.+.+. ..|||+||.+++
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~ 200 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA 200 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 999999999999999988877777664 348999998764
No 22
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.1e-27 Score=194.70 Aligned_cols=183 Identities=14% Similarity=0.188 Sum_probs=148.8
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CCC--CC
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VKP--PD 150 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~~--p~ 150 (270)
|..+.+++++..|++.. ..+++|+|++|.+||.|.++||||||||||+++++|++. |..|++ .++. ..- .+
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 35678889999998844 557899999999999999999999999999999999995 888884 3332 112 24
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
.|. ++++.--+ +++++.+|.++..+..|+......+...+++..+++++ ..++-++||||+||+.++.+++.+|+
T Consensus 76 rgv-VFQ~~~Ll--PWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGV-VFQNEALL--PWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cee-EeccCccc--hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 565 66665543 34788899999999999977666667778888888763 56777999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
.+++|||+..+|.-.++++.+++- ...+|||+.++++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl 197 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 999999999999877777777654 3378999998775
No 23
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=7.9e-27 Score=202.76 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=128.7
Q ss_pred cceEEeccchhhhhhhhc-----ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC
Q 024225 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~-----~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p 149 (270)
+++++++||+|.|..... .+.|++||||+|++||++||+|+|||||||+.|+|.|++ .|
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~----------------~p 65 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE----------------EP 65 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc----------------CC
Confidence 457999999999975321 267899999999999999999999999999999999998 78
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
+.|. |.++|.++.. +. .....+.+.++++.+++.. ..++.+|||||+||+.++++++.+
T Consensus 66 t~G~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 66 TSGE-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred CCce-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 8898 8888876432 11 1112355778888888764 568889999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
|+++|.|||+..+|-..+.++..++. ..+|++||..
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 99999999999999988888888887 3388998874
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=6.7e-27 Score=211.20 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=129.6
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------ 147 (270)
.++++++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|++. |++|++ +++...
T Consensus 5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 35799999999998633 7899999999999999999999999999999999996 888884 333211
Q ss_pred -CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....|. ++++.... ..+++.++..+....++...........++++.+.+.. +..+..||+||+||+.++.++.
T Consensus 78 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 78 ARQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred HHhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 112333 55554322 23566666655444444432222234456777766653 5566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.+|++||+|||+.+||+..++.+.+++.. .|+++|+.+
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 99999999999999999777777666652 255566654
No 25
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=7.1e-27 Score=216.04 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=135.6
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP 149 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p 149 (270)
+.++++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|++. |++|++ +++... +|
T Consensus 11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456799999999998633 6799999999999999999999999999999999995 888884 444311 11
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....+++++.. + .+++++.++..+.....+.+.......+.++++.+++.. +.++..+|+||+||+++++++..
T Consensus 84 ~~r~ig~vfQ~~~-l-fp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 84 ENRHVNTVFQSYA-L-FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred HHCCEEEEecCcc-c-CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11233555532 2 234677776665443334322212234566777777653 56777999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+|+++++|||+..||...++.+.+.+. ..|||+||.+++
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea 208 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA 208 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999987777777665 239999998764
No 26
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=194.54 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=123.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.+.++++||++.|+..+ +|+|||++|++++++||+||||||||||+|++.++.. +-| | .-..|.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~--~--------~r~~G~- 68 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIP--G--------ARVEGE- 68 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCc--C--------ceEEEE-
Confidence 45789999999999866 8899999999999999999999999999999999863 111 1 112466
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------------------------CC
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------------------------GS 203 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------------------------~~ 203 (270)
|.++|.+++....+ +...+++.|+.++.....-+++.+|+..| .+
T Consensus 69 v~~~g~ni~~~~~d----~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~ 144 (253)
T COG1117 69 VLLDGKNIYDPKVD----VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH 144 (253)
T ss_pred EEECCeeccCCCCC----HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh
Confidence 77777777654332 33456666662222111114444444432 12
Q ss_pred cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc------eEEeccc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK------CYATSFK 261 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~------i~v~~~~ 261 (270)
...-.+||||+||+-++++++.+|+||++|||++.||+....++.+++.+. |.|||+.
T Consensus 145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 234478999999999999999999999999999999999998888888732 6677765
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=1.3e-26 Score=212.04 Aligned_cols=178 Identities=16% Similarity=0.116 Sum_probs=128.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------ 147 (270)
+++++++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|++. |++|++ +++...
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 45799999999998643 7899999999999999999999999999999999996 888883 333211
Q ss_pred -CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....|. ++++.... ..+++.++..+....++...........++++.+++. .+..+..||+||+||+.++.++.
T Consensus 112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 112233 55443322 2255555554433333432211223345667766665 35667799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.+|+++|+|||+.+||+..++.+.+++.. .|+++|+.+
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 99999999999999999877777777753 266666654
No 28
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-26 Score=212.81 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=135.3
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP 149 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p 149 (270)
+.++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... +|
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 445799999999997632 6799999999999999999999999999999999986 889984 444211 11
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....+++++.. + .+++++.+|..+..+..+.........+.++++.+++.. +.++..+|+||+||+++++++..
T Consensus 89 ~~r~ig~vfQ~~~-l-fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 89 YQRPINMMFQSYA-L-FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HHCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 12233555543 2 234677777766544444332222344567777777653 56777999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHH----hhc----cceEEeccccch
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSS----MFD----EKCYATSFKETY 264 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~----~~~----~~i~v~~~~~~~ 264 (270)
+|++|++|||+..||...++.+.+ +.+ ..||++||.+++
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 213 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA 213 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 999999999999999987766654 333 248999998764
No 29
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-26 Score=212.64 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=131.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
+.++++||++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|++ +++... .+
T Consensus 2 ~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 2 ASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred CEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence 4689999999997632 6799999999999999999999999999999999986 888984 443211 11
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....++.++... + +.+++.++..+.....+.........+.++++.+++.. +.++..+|+||+||++++.++..++
T Consensus 75 ~~i~~v~Q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 75 RGVGMVFQSYAL-Y-PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred CCEEEEeCCccc-C-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 122335555332 2 23566666554433333322222234567777777753 4567799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++|++|||+..||...++.+.+.+. ..|+++|+.+..
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~ 197 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 9999999999999987777665554 238999988643
No 30
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=2.7e-26 Score=209.84 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=130.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C--C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--p--- 149 (270)
+++++||+|.|+.......+|+|+||++++||++||+||||||||||+|+|+|+++ |++|++ +++... . +
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 37899999999632112347899999999999999999999999999999999996 888884 443211 0 1
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....+++++...+. ..++.++..+.....+...........++++.+++.. +.++..+|+||+||+++++++
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 12233555533221 2455565554443334332223345567788777753 567779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
..+|++|++|||+..||+...+.+.+++.. .|+++|+.+.
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999877777666552 3777777654
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.6e-26 Score=197.07 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=141.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------- 146 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------- 146 (270)
++++++++++.|++. ..+++++||++++|+.++|+|+||||||||+++|+|++. |++|.+ +++..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 468899999999874 337899999999999999999999999999999999996 888885 33321
Q ss_pred -CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 147 -~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....|. +.++..+... .-++.++..+.....|++......++.+.++.+++.. +..+..+|+||+||+++|.++
T Consensus 76 ~~~~~vG~-VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 76 ELRQKVGL-VFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HhhcceEE-EEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 1233454 6666643222 1355666777777888765545566778888777763 566779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY 264 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~ 264 (270)
+.+|++||+|||+..||+..++++.+++.. .|.++||.+..
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 999999999999999999888888777752 47778877543
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=3e-26 Score=211.08 Aligned_cols=179 Identities=13% Similarity=0.168 Sum_probs=134.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--ccc-CCCCCC---CC-
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASS-FDSQVK---PP- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~--G~~-~~~~~~---~p- 149 (270)
.++++||++.|++.. +|+++||++++|++++|+||||||||||+++|+|++. |++ |++ +++... .+
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 478999999998632 7899999999999999999999999999999999986 888 884 443211 11
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....++.++.. ++ +.+++.++..+.....+.+.......+.++++.+++.. +.++..+|+||+||++++.++..+
T Consensus 78 ~r~ig~vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 11223555433 22 34677777766554444433223345667788777753 567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccch
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKETY 264 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~~ 264 (270)
++++++|||+..||...++++.+.++ ..||+|||.++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea 202 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA 202 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 99999999999999987777766554 248999998764
No 33
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.9e-26 Score=206.25 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=129.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC-C---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK-P--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~-~--- 148 (270)
|.+++++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|++.. .++++|++ +++... .
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 34689999999997633224578999999999999999999999999999999999841 11356763 333211 0
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD 215 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~ 215 (270)
.....+++++.....++.++..+...+..... +...........++++.+++.. +.++.+||+||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 11233466665422222233322222211111 2221222344567788887752 4577899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|+.++.+++.++++||+|||+..||...+.++.+++. ..|+|+||.+.
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~ 216 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL 216 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999987777777665 24888988754
No 34
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.2e-26 Score=192.52 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=114.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
|..+.++||.|.|+... +++++||++++||+|||+|||||||||.+.++.|++ .|+.|.
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv----------------~~d~G~- 60 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV----------------RPDSGK- 60 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE----------------ecCCce-
Confidence 45789999999998855 679999999999999999999999999999999999 677777
Q ss_pred eecCCCCccccccCcccChHHHHHhcCC---CCCccHH---------------------------HHHHHHHhhccC--C
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPL---------------------------LLLNCLKNLRNQ--G 202 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~---~~~~~~~---------------------------~~~~~l~~l~~~--~ 202 (270)
|.+|+.++.. .+-+.+++.|+ |+..... .+.++++.+... .
T Consensus 61 i~ld~~diT~-------lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr 133 (243)
T COG1137 61 ILLDDEDITK-------LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133 (243)
T ss_pred EEECCccccc-------CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh
Confidence 7777776543 11223333332 2222111 122344444433 3
Q ss_pred CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 203 ~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+.....+|||+++|++++++++.+|+.+++||||.+.||....+++.++.
T Consensus 134 ~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~ 183 (243)
T COG1137 134 DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183 (243)
T ss_pred cCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence 44566899999999999999999999999999999999977777777666
No 35
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=6e-26 Score=194.89 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=124.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 2 l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 2 IRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred eEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHHH
Confidence 78899999996421 126799999999999999999999999999999999985 778873 333211 00
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++.++..... .+++.++........+.........+.++++.+++.. +..+..+|+||+||++++.++.
T Consensus 77 ~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 11223454432211 1344444433222223221112234566777776643 4456799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999999999888777777652 377888765
No 36
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=6.3e-26 Score=194.92 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=122.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C-----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----- 148 (270)
++++||++.|++......+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4678999999752101226799999999999999999999999999999999985 788874 343211 0
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....++.++.... ..++..++........+.........+.++++.+++.. +..+..+|+||+||++++.++
T Consensus 78 ~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 78 AFRRRHIGFVFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHhhcEEEEeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 01122244443211 12344443333222222211111234556777776653 455679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|+..++.+.+++. ..|+++|+.+.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 99999999999999999987777766665 23677777653
No 37
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.4e-26 Score=200.65 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=138.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcc-cCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQ-------- 145 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~-~~~~~-------- 145 (270)
+++++||+..|......+.+++||||++++||++||+|+|||||||+++.|+|++.. ..-..|+ .+++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 368999999998755557799999999999999999999999999999999999941 1112355 34443
Q ss_pred ---CCCCCceEEeecCCCCccccccCcccChHHHHHhc-CC-CCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCC
Q 024225 146 ---VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD 215 (270)
Q Consensus 146 ---~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~-~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~ 215 (270)
..++....+|++|.....++-++.-+...+....+ +. ..........++++.+++.. +.|+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 12344555677777655554444333222222222 11 12223445677888888764 4688899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
|+.++.+++.+|++||.|||+..||-..+.++.++++. .||||||..
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999999999888882 389999984
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.8e-26 Score=194.78 Aligned_cols=177 Identities=16% Similarity=0.145 Sum_probs=124.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~ 150 (270)
++++|+++.|++.. +++|+||++++||++||+||||||||||+++|+|+++ |++|++ +++.... ..
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 46789999997632 6799999999999999999999999999999999985 888884 3332111 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++.++.... +.+++.++........+.........+.++++.+++.. +.++..+|+||+||+.++.++..+++
T Consensus 74 ~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 122344443221 22444444433323333322212334566777777653 45667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++|+|||+..+|+...+.+.+++. ..|+++|+.+.
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999987777766664 23777777653
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.92 E-value=7.8e-26 Score=204.03 Aligned_cols=177 Identities=17% Similarity=0.125 Sum_probs=125.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-----C
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-----P 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-----p 149 (270)
+++++||++.|++.. +|+++||++++|+++||+||||||||||+++|+|++. |++|++ +++... . .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 589999999998633 7799999999999999999999999999999999985 888884 333211 0 1
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....++.++.... +.+++.++........+...........++++.+.+.. +..+..||+||+||+.++.++..+|
T Consensus 77 ~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 1122355543321 22455554433222233221111233456677666643 5567799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+++|+|||+..+|+..++.+.+++.. .|+++|+.+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 99999999999999877777776652 367777764
No 40
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-25 Score=194.83 Aligned_cols=183 Identities=13% Similarity=0.050 Sum_probs=126.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
++++++||++.|++......+|+++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 468999999999742111236799999999999999999999999999999999985 888884 443211 00
Q ss_pred ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
....++.++.... +.++..++..+.....+.........+.++++.+++.. +..+..+|+||+||++++.
T Consensus 81 ~~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLL--PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHhccEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 1123355553321 12445444433222122221112234566777777653 3456689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
++..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999999999999877777666642 2777777654
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=7.8e-26 Score=207.84 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=131.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--C
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--D 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~ 150 (270)
.++++||++.|++.. +++++||++++||+++|+||||||||||+++|+|++. |++|++ +++... .+ .
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 478999999997633 7799999999999999999999999999999999985 888884 444211 11 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
...+++++.. ++ +.+++.++..+..... +...........++++.+++.. +.++..+|+||+||+++++++.
T Consensus 75 ~i~~v~Q~~~-l~-p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYA-LF-RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcc-cC-CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 2233555532 22 2356655555433221 1111112345567788777653 5677799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
.+++++++|||+..||...++.+.+.+. ..||++||.+.+
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea 200 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA 200 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999988877777665 238999998654
No 42
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=203.92 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=132.1
Q ss_pred cceEEeccchhhhhhhh------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~ 147 (270)
.++++++||++.|+... ..+.+++||||+|++||++||+|+||||||||+++|+|++. |++|++ +++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 35799999999996321 12457899999999999999999999999999999999985 778873 443211
Q ss_pred -C---------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC---CcCCCCCCccc
Q 024225 148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (270)
Q Consensus 148 -~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~ 213 (270)
. .....++.++.+...++.++..+...+..... +...........++++.+++.. +.++..+|+||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 0 01233466665422333334333322221111 2222122345577788877742 56778999999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+||+.++.++..++++||+|||+..||...++.+.+++. ..|+|+||.+..
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV 218 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999988887777775 238888887543
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.8e-26 Score=193.76 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=119.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~ 151 (270)
++++|+++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+ ..
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 36789999997632 6799999999999999999999999999999999985 778873 333211 00 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..+++++.... ..++..++........+...........++++.+++.. +..+..+|+||+||+.++.++..++++
T Consensus 74 i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22244433211 11344333332222222111111233456677666643 345668999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
+|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 999999999999877777776652 266777654
No 44
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.2e-25 Score=191.53 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=125.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.+++++|+|.|++.+ |++|+||++++|++.|++|+|||||||++|+|.|++. |+.|. |.
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~--------------I~ 60 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGE--------------IT 60 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCce--------------EE
Confidence 478999999999976 8899999999999999999999999999999999994 55555 44
Q ss_pred cCCCCcc----------------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225 157 MDGFHLY----------------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE 218 (270)
Q Consensus 157 ~dg~~~~----------------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~ 218 (270)
++|..+. .+.+++.+...+.....|++.+.....+...++.+.... ...+.++|.|+.|++.
T Consensus 61 ~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ 140 (300)
T COG4152 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ 140 (300)
T ss_pred EcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH
Confidence 4442221 123555566667777788877666667777888877764 3466799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+..++...|+++|+||||++||+...+.+.+.+.
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~ 174 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIF 174 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHH
Confidence 9999999999999999999999987777777766
No 45
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=1.3e-25 Score=192.41 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=121.7
Q ss_pred EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
++++|+++.|+ +. .+++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 2 l~~~~l~~~~~~~~----~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPGGV----AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCCCc----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 68899999994 32 26799999999999999999999999999999999985 778874 3332110 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++.++.... ...+..++........+.........+.++++.+++.. +..+..+|+||+||++++.++
T Consensus 75 ~~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHHhheEEEecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1122244443211 11344443333222222211112234456677766653 345569999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 999999999999999999888777777752 367777764
No 46
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-25 Score=204.74 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=130.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC---C-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK---P- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~---~- 148 (270)
|++++++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|++.. ..+++|++ +++... .
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 35799999999996422224478999999999999999999999999999999999841 11467773 444211 0
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhc---CC--CC-CccHHHHHHHHHhhccCC-----CcCCCCCC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD 210 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~~S 210 (270)
.....+++++......+.+++.++........ +. .. ........++++.+++.. +.++..||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 11233466665432222233333222111111 10 00 011234567888888763 45677999
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY 264 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~ 264 (270)
+||+||++++.++..++++||+|||+..||...+..+.+++.. .|+|+||.+..
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 9999999999999999999999999999999888877777662 48888887443
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=1.7e-25 Score=204.06 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=132.5
Q ss_pred ceEEeccchhhhhhhh---------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC
Q 024225 76 PVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ 145 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~---------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~ 145 (270)
++++++||++.|+... ....+++|+||+|++||++||+|+||||||||+++|+|++. |++|++ +++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECCE
Confidence 5799999999996421 12457899999999999999999999999999999999985 788884 4442
Q ss_pred CC-C---------CCceEEeecCCCCccccccCcccChHHHHHhc--CCCCCccHHHHHHHHHhhccC---CCcCCCCCC
Q 024225 146 VK-P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (270)
Q Consensus 146 ~~-~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S 210 (270)
.. . .....++.++......+.++..++..+....+ +...........++++.+++. .+.++.+||
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 11 0 11234466665321222345544443322222 122111223446777777773 256778999
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+||+||++++.++..++++||+|||+..||...+.++.+++. ..|+|+||.+..
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~ 225 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV 225 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999988877777665 238888887543
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1e-25 Score=195.87 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=121.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++||++.|++.. +++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 36789999997532 6799999999999999999999999999999999985 788874 333211 00
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++.++.... +.+++.++........ +...........++++.+++.. +..+..+|+||+||+.++.++
T Consensus 74 ~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 74 RLRRRMGMLFQSGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHhcceEEEccCcccC--CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 1122244443211 1234444433221111 1111111233456677776643 456678999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~ 199 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT 199 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 999999999999999999877777666652 2677777653
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.2e-25 Score=193.58 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=122.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCceEE
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVATV 154 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g~~ 154 (270)
++++|+++.|++......+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... ......+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 3678999999752111237799999999999999999999999999999999985 788874 333211 1112222
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
+.++.... ...+..++........+...........++++.+.+.. +..+..||+||+||++++.++..+++++|+
T Consensus 78 v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 78 VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 44443221 11344444333222223221112234566777776643 445679999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
|||+..+|+..++.+.+++. ..|+++|+.+
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999999987777777664 2267777764
No 50
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.92 E-value=2.9e-25 Score=192.11 Aligned_cols=182 Identities=16% Similarity=0.073 Sum_probs=124.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 578999999999752211236799999999999999999999999999999999985 788874 333211 00
Q ss_pred ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
....++.++.. +. ..++..++........+.........+.++++.+.+.. +..+..+|+|++||+.++.
T Consensus 82 ~~~~~~~~i~~~~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFM-LI-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccc-cC-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 11222444322 11 11344343332211122211112234556677776643 4456789999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999999999999999987777777663 2267777764
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.8e-25 Score=201.55 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=127.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------ 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------ 148 (270)
.++++|+++.|++.. +|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 478999999997532 7899999999999999999999999999999999985 888884 333211 1
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
...|. ++.+... ...+++.++..+....++.+.........++++.+++.. +..+..+|+||+||+.++.++..+
T Consensus 75 ~~ig~-~~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 75 RNIGY-LPEHNPL--YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred hceEE-ecCCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 11232 4444322 222455555554444444432222344567777777653 456679999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
|+++|+|||+.++|+..++.+.+++.. .|+++|+.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~ 193 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ 193 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 999999999999999877777776663 256666654
No 52
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-25 Score=196.91 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=124.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC-CceEE
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP-DVATV 154 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p-~~g~~ 154 (270)
++++|+++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+ ....+
T Consensus 2 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERGV 74 (255)
T ss_pred EEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEEE
Confidence 78899999997632 6799999999999999999999999999999999985 888884 443211 11 11223
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
+.++.... ...++.++........+.........+.++++.+++.. +..+..+|+||+||+.++.++..+++++|+
T Consensus 75 v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 75 VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55543221 12344444433222223221112234567777776653 445678999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999877777776542 277777764
No 53
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.92 E-value=3.2e-25 Score=202.18 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=130.2
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCC--
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVK-- 147 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~-- 147 (270)
..++++++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|++. |+ +|++ +++...
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 34679999999999643223457899999999999999999999999999999999995 53 7763 443211
Q ss_pred ---------CCCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcc
Q 024225 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHG 212 (270)
Q Consensus 148 ---------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g 212 (270)
......+++++.....++.++..++..+....+ +...........++++.+++.. +.++.++|+|
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 011233466665422333334333222222122 1111111234566777776642 3467799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|+||++++.++..++++||+|||+..||...+..+.+++. ..|||+||.+.
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~ 224 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV 224 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 9999999999999999999999999999988877777665 24889998764
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=1.7e-25 Score=192.47 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=122.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~ 150 (270)
++++||++.|++.. ..+++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCC--ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence 46789999997521 126799999999999999999999999999999999985 788874 3332110 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++.++.... ...+..++........+...........++++.+++.. +..+..+|+||+||++++.++..+++
T Consensus 76 ~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 76 SLGYCPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hEEEecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 122244443221 12344444433322233221111234556677666643 45567899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++|+|||+..+|....+.+.+++.. .|+++|+.+
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 193 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD 193 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 9999999999999888887777762 366667664
No 55
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.92 E-value=2.7e-25 Score=191.37 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=123.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
+++++||++.|++......+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 36789999999642111236799999999999999999999999999999999985 788884 333211 00
Q ss_pred -----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
....++.++..... .++..++........+.........+.++++.+++.. +..+..+|+||+||++++.+
T Consensus 78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 11233555432211 2344443332211112111111233456677766643 44567899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999987777776664 23777777653
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=2e-25 Score=191.83 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=124.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~ 150 (270)
++++|+++.|++..+...+++++||++++|++++|+|+||||||||+++|+|++. |++|++ +++.... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHHh
Confidence 6789999999763111137799999999999999999999999999999999985 788873 3332111 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++.++.... ..+++.++........+...........++++.+++.. +..+..+|+||+||++++.++..+++
T Consensus 79 ~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLY--DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccC--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 122244443211 12445454443333333221112234566777776653 44566899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999987777777665 2267777764
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.8e-25 Score=191.17 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=122.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCceE
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVAT 153 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g~ 153 (270)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .....
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 36789999997532 6799999999999999999999999999999999985 778874 4432111 01122
Q ss_pred EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
++.++.... ..++..++........+.........+.++++.+++.. +..+..+|+||+||+.++.++..+++++|
T Consensus 74 ~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 244443221 12344444433222233322222234556677766543 34566899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 9999999999877777776652 3666666543
No 58
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=2.3e-25 Score=190.55 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=119.5
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C-----C
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P-----D 150 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p-----~ 150 (270)
+++|+++.|++.. ..+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++.... + .
T Consensus 1 ~~~~l~~~~~~~~--~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 1 ELKNLSFSYPDGA--RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred CceeEEEecCCCC--eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence 3578999997521 126799999999999999999999999999999999985 788873 3332110 0 1
Q ss_pred ceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 151 VATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 151 ~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
...++.++.. .++ ..+..++........+...........++++.+++.. +..+..+|+||+||++++.++..++
T Consensus 76 ~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 76 KVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred hceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1222444431 111 1344333322221122111111233456677666643 4566799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9999999999999987777777664 2367777764
No 59
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.1e-25 Score=203.28 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=126.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++||++.|+.......+|+|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 37899999999721111237899999999999999999999999999999999985 788874 3332110
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....+++++.... ..+++.++..+.....+...........++++.+++.. +.++..+|+||+||++++.++
T Consensus 78 ~~~~~~ig~v~q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLL--SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 01122355443321 12455555544333334322122234566777776653 456679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
..++++||+|||+..||+..++.+.+++.. .|+++|+.+.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999877777776652 3677777643
No 60
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.6e-25 Score=192.14 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=123.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------- 148 (270)
++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHHH
Confidence 7889999999763101137799999999999999999999999999999999995 788873 4432111
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.....++.++.... ..++..++........+...........+.++.+++.. +..+..+|+||+||++++.++.
T Consensus 79 ~~~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLL--SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 01122244443221 12344444333222223211111234456677776643 4456789999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999987777766664 23677777643
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=2.9e-25 Score=190.14 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=121.0
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~ 151 (270)
++++|+++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+ ..
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 36789999997633 6799999999999999999999999999999999985 888873 333211 11 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++.++... + ...+..++........+...........++++.+++.. +..+..+|+||+||++++.++..++++
T Consensus 74 i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYAL-Y-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhh-c-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2224444321 1 12344444433222222211111223455666666542 455679999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
+|+|||+..+|+...+.+.+++. ..|+++|+.+
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999999987777766664 2367777764
No 62
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.4e-25 Score=204.77 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=124.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-C--CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-K--PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-~--~p---- 149 (270)
++..++.+.|+. ..+++++||++++||+++|+||||||||||+|+|+|++. |++|++ +++.. . .+
T Consensus 29 ~~~~~~~~~~~~----~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~ 101 (400)
T PRK10070 29 LSKEQILEKTGL----SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELR 101 (400)
T ss_pred ccHHHHHhhcCC----eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHH
Confidence 344444444433 237899999999999999999999999999999999996 888884 44321 1 10
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++.++.... +.++..++..+.....+...........++++.+++.. +.++..+|+||+||+++++++
T Consensus 102 ~~~~~~igyv~Q~~~l~--~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL 179 (400)
T PRK10070 102 EVRRKKIAMVFQSFALM--PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL 179 (400)
T ss_pred HHHhCCEEEEECCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHH
Confidence 1123355543322 22455555554333334322222344567777777653 456779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
..++++||+|||+..+|+..++.+.+++. ..|+++|+.+..
T Consensus 180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~ 228 (400)
T PRK10070 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA 228 (400)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 99999999999999999987777777664 237888887653
No 63
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=4e-25 Score=188.35 Aligned_cols=172 Identities=17% Similarity=0.084 Sum_probs=120.2
Q ss_pred Eeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCce
Q 024225 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDVA 152 (270)
Q Consensus 79 ~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~g 152 (270)
+++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... ....
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36789999975 32 7899999999999999999999999999999999985 778874 3332110 0112
Q ss_pred EEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 153 TVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 153 ~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
.++.++.. .++ ..+..++........+ .......++++.+++.. +..+..+|+||+||++++.++..++++
T Consensus 74 ~~~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 74 GYVMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred EEEecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 22444431 111 1233333322111111 12245567777777653 455679999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+++|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999888887777752 3677777643
No 64
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=191.55 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=117.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
+++++++|+|.|++.. +++||||++++||++||+||||||||||+++|.|+++ |++|++ +++... +|
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5689999999999966 9999999999999999999999999999999999995 777663 444311 11
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHh-------cCCCC-----CccHHHHHHHHHhhccCCC--cCCCCCCccc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW-----TFNPLLLLNCLKNLRNQGS--VYAPSFDHGV 213 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-------~g~~~-----~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~ 213 (270)
..|. .......-..+.+++.+|....... ++.+. ....+...++++.+++... .....+|.|+
T Consensus 76 iar~Gi-~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 76 IARLGI-ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHhccc-eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 1121 1111111122346666655433211 11110 1112334566777777653 4455899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+++++++.+++.+|++|++|||..++.+.-..++.+++.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~ 193 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR 193 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999866555555554
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.9e-25 Score=196.89 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=127.9
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-----
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P----- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~----- 148 (270)
.++++||++.|+.... ...+|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4889999999974211 1237899999999999999999999999999999999985 888884 443211 0
Q ss_pred ---CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhh
Q 024225 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~ 220 (270)
.....+++++.. .++. .++.++..+.....++..........++++.+++. .+..+..||+||+||++++
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred HHHhhceEEEecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 011233555531 1111 34544444333333432221223456777777764 3456779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.++..+|++||+|||+..||...+..+.+++. ..|+++|+.+.
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999988777777664 23777887654
No 66
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=4.7e-25 Score=191.92 Aligned_cols=178 Identities=18% Similarity=0.129 Sum_probs=121.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P---- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p---- 149 (270)
+++++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... . +
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 367899999997532 6799999999999999999999999999999999985 788874 333211 0 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....++.++..... .++..++........+...........++++.+++.. +..+..+|+||+||++++.++..++
T Consensus 74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11223444432211 2344443332222222211112233456677666543 4566799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 9999999999999987777766664 22667776643
No 67
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.7e-24 Score=175.77 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=131.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQV-------- 146 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~~~-------- 146 (270)
+|++++++|..+.....+.+|++|++.|++||.++|+||||||||||+-+++|+-. |++|++ .+...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 78999999999887777889999999999999999999999999999999999984 666652 11111
Q ss_pred --CCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCc--CCCCCCcccCChhhhhhh
Q 024225 147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--YAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 147 --~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~--~~~~~S~g~~~rv~~~~~ 222 (270)
.+.....+++ ..|++- +.++..+|........|-............++.++++... |+.++|||++||++++++
T Consensus 83 A~~R~~~vGfVF-QSF~Li-p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVF-QSFHLI-PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEE-Eeeecc-ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 1111122122 222221 2255555554444444421112223345677778887654 677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~ 261 (270)
++..|++++-|||+.-||...-+++.+++- ..+.||||.
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 999999999999999999988888888765 338888886
No 68
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.91 E-value=5.1e-25 Score=191.03 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=121.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46789999997532 6799999999999999999999999999999999985 888884 333211 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....++.++.... +.++..++........+.........+.++++.+++.. +..+..+|+||+||++++.++..+
T Consensus 74 ~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 74 RLGIGYLPQEASIF--RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred hccEEEecCCcccc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1122244443221 12344444433222222211111233456677666543 455668999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999999987777777664 2267777664
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=4.9e-25 Score=190.04 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=120.5
Q ss_pred EEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225 78 VEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---- 148 (270)
Q Consensus 78 l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---- 148 (270)
++++|+++.| ++. .+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 2 l~~~~l~~~~~~~~----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLGGR----QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecCCC----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhHH
Confidence 6889999999 432 26799999999999999999999999999999999985 788874 333211 0
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....++.++....+ ..+..++........+...........++++.+.+.. +..+..+|+||+||++++.++
T Consensus 75 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 011223444432211 1344343332222222211111223445666666543 445679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999999999877777666652 2677777643
No 70
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=4e-25 Score=205.75 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=125.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-C------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-K------ 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-~------ 147 (270)
++++++||++.|++.. +|+++||++++||+++|+||||||||||+|+|+|+++ |++|++ +++.. .
T Consensus 2 ~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 2 PMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSARA 74 (402)
T ss_pred ceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHHH
Confidence 4789999999998633 7799999999999999999999999999999999985 888873 33321 1
Q ss_pred -CCCceEEeecCCCCccccccCcccChHHHHHhc--CCC--CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 148 -~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~~--~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
....+. +.++....+ .+++.++....+..+ .+. ...+...+.+.++.+++.. +..+..+|+||+||+.++
T Consensus 75 ~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 75 ASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 111233 444432212 244444333211111 111 1123345567777777753 456779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
.++..++++||+|||+..||...+.++.+++.. .|.++|+.+.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 999999999999999999999777777666552 2666776654
No 71
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=3.8e-25 Score=189.31 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=119.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------- 149 (270)
++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++.....
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 36789999997632 6799999999999999999999999999999999985 778873 33321100
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++..+.... +.++..++...... ..+...........++++.++... +..+..+|+|++||++++.++.
T Consensus 74 ~~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 74 LRQKVGMVFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHhcceEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 1122244443211 11344343332211 112211111233456666666543 4566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
.+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9999999999999999987777766665 2367777664
No 72
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=7.4e-25 Score=192.14 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=123.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 2 SAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred CcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence 3689999999997532 6799999999999999999999999999999999985 788874 3332110
Q ss_pred ---------CCceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCCh
Q 024225 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (270)
Q Consensus 149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~r 216 (270)
.....++.++.... +..+..++....... .+...........++++.+++.. +..+..+|+||+||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 01122344443221 113444443322111 12111111233456677666643 45667999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999988877776654 23677777643
No 73
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=4e-25 Score=188.97 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=122.3
Q ss_pred ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCccc
Q 024225 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAME 171 (270)
Q Consensus 93 ~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~ 171 (270)
.+.+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|++ ..+....+ +-+..- ++++++..+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~G--f~pelTGre 108 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAG--FDPELTGRE 108 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccC--CCcccchHH
Confidence 4678999999999999999999999999999999999995 666653 22211111 111100 234588888
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHh--hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH
Q 024225 172 DPKEAHARRGAPWTFNPLLLLNCLKN--LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (270)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~l~~--l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~ 249 (270)
|........|+......+.+.++.+- |+...+.....||.||+-|++.+.++..++++||+||.+...|+.+.++..+
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 98888888888655555556666553 3334466677999999999999999999999999999999999988888877
Q ss_pred hhccc-------eEEecccc
Q 024225 250 MFDEK-------CYATSFKE 262 (270)
Q Consensus 250 ~~~~~-------i~v~~~~~ 262 (270)
.+++. |+|+||.+
T Consensus 189 rl~e~~~~~~tiv~VSHd~~ 208 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLG 208 (249)
T ss_pred HHHHHHHcCCEEEEEECCHH
Confidence 77744 78888763
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.9e-25 Score=191.65 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=122.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--C
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--D 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~ 150 (270)
.++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+ .
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 478999999997632 6799999999999999999999999999999999985 788874 333211 01 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCC----CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~----~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
...++.++.... +.+++.++..+.....+. ...........+++.+++.. +..+..+|+||+||++++.++.
T Consensus 75 ~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 122344443221 123444433322111111 00011123456667666643 4456789999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|+...+.+.+++. ..|+++|+.+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 199 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999987777776664 23777777653
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7e-25 Score=195.65 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=125.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
++++++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3689999999997421 1227899999999999999999999999999999999985 778873 3332111 0
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....++.++..... ...++.++..+.....++..........++++.+++.. +..+..||+||+||++++.++..
T Consensus 79 ~~~~i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 79 IRHKIGMVFQNPDNQF-VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HHhhceEEEcChHHhc-ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 01223444431111 11344444433322233322112234566677776653 45667999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++++||+|||+..+|+..++.+.+++. ..|+++|+.+.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999987777776654 23677777644
No 76
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=7.5e-25 Score=194.44 Aligned_cols=178 Identities=15% Similarity=0.199 Sum_probs=123.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 6 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 6 NLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRSR 78 (269)
T ss_pred ceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChhh
Confidence 5799999999997532 6799999999999999999999999999999999985 888884 4432110
Q ss_pred ----CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
.....++.++.... ..++..++........ +...........++++.+++.. +..+..+|+||+||+.++.
T Consensus 79 ~~~~~~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred HHHHhhcEEEEecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 11122344443221 1234444443321111 1111111223455677766653 4566799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 99999999999999999999887777766652 367777753
No 77
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1.3e-24 Score=185.65 Aligned_cols=173 Identities=18% Similarity=0.111 Sum_probs=121.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC----C
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP----D 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p----~ 150 (270)
+++++||++.|++.. +++++||+|++|+++||+||||||||||+++|+|++. |++|++ +++... .+ .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 589999999997632 6799999999999999999999999999999999984 777774 333211 00 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
.+. +..+... ....+..++........+ .......++++.+++.. +..+..+|+|++||+.++.++..+++
T Consensus 75 ~~~-~~~~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 75 CHY-LGHRNAM--KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cEE-ecCCCcC--CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 111 2222111 111333333322111111 12234566777776643 45566899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++|+|||+..+|...++.+.+++.+ .|+++|+.+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 9999999999999888888777763 2677777653
No 78
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=8.9e-25 Score=186.24 Aligned_cols=172 Identities=19% Similarity=0.175 Sum_probs=120.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------C
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------P 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------~ 148 (270)
+++++|+++.|++.. +++++||++++||++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 378899999997632 6799999999999999999999999999999999985 777773 333211 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
...+. +..+... .+.++..++........+. .+...+.++++.+++. .+..+..+|+|++||++++.++..+
T Consensus 74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 01111 2222211 1123444433332222121 2234556677777664 2456679999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK 261 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~ 261 (270)
++++|+|||+..+|...++.+.+++.. .|+++|+.
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 189 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh
Confidence 999999999999999888888776652 25666654
No 79
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=3.7e-25 Score=189.56 Aligned_cols=177 Identities=14% Similarity=0.086 Sum_probs=119.4
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CCCceEE
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATV 154 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p~~g~~ 154 (270)
+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... ....+ +
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~-~ 72 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIG-Y 72 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheE-E
Confidence 3678999997532 6799999999999999999999999999999999985 778874 443211 11122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
+.++.........++.++........ +. ..........++++.+.+.. +..+..+|+||+||++++.++..+++
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 44443211111123333322211110 00 01112234556677666542 45667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++|+|||+..||+..++.+.+++.. .|+++|+.+.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999887777776652 3777777653
No 80
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=6.7e-25 Score=186.07 Aligned_cols=149 Identities=20% Similarity=0.232 Sum_probs=113.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||+..|+..+ +|++|||++++||+++|+|+||+|||||+|.|+|++ ++..|. |
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~----------------~~~~G~-I 60 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV----------------RPRSGR-I 60 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCee-E
Confidence 5789999999999855 889999999999999999999999999999999998 555666 6
Q ss_pred ecCCCCccccccCcccChHHHHHhcCC---CCCccHHHHHHHHHhhcc---------------------------CCCcC
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN---------------------------QGSVY 205 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~---~~~~~~~~~~~~l~~l~~---------------------------~~~~~ 205 (270)
.++|.++.. .+...+.+.|+ |+..+...-+++.|||.. -.+..
T Consensus 61 ~~~G~dit~-------~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~ 133 (237)
T COG0410 61 IFDGEDITG-------LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133 (237)
T ss_pred EECCeecCC-------CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCc
Confidence 666665432 11112223332 444444444455555543 33344
Q ss_pred CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
...+|||++|.+++++++...|++|++|||..++-|...+++.+.+.
T Consensus 134 aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 55889999999999999999999999999999999977777766665
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.4e-25 Score=194.64 Aligned_cols=180 Identities=17% Similarity=0.123 Sum_probs=123.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
++++++||++.|+.. ..+++|+||++++|+++||+||||||||||+++|+|+++ |++|++ +++.....
T Consensus 3 ~~l~~~~l~~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 3 NIIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred ceEEEEEEEEEeCCC---CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 468999999999631 127799999999999999999999999999999999985 777773 33321100
Q ss_pred --CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225 150 --DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 --~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++.++.. .+.. .++.++..+.....+.........+.++++.+++. .+..+..||+|++||++++.++.
T Consensus 77 ~~~~i~~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFS--STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred HHhhEEEEecChhhhhcc--CcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11222444421 1111 34444433222222221111123345666666654 24566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999999999999999988877777765 23677777653
No 82
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=7.2e-25 Score=187.75 Aligned_cols=177 Identities=19% Similarity=0.122 Sum_probs=120.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++|+++.|++. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 3678999999642 126799999999999999999999999999999999985 777773 3332110 0
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++.++.... +.++..++........+.........+.+.++.+++.. +..+..+|+||+||+.++.++.
T Consensus 75 ~~~~~i~~v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 75 YLRRKIGVVFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred HHHHheEEEecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence 1122244433211 12344444433222222211111223455666665543 3456789999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.+++++|+|||+..+|+..++.+.+++.. .|+++|+.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~ 197 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999999999999877777776652 367777764
No 83
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=1.4e-24 Score=187.55 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=122.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
+++++||++.|++......+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 36789999999753111136799999999999999999999999999999999985 888874 333211 00
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH-HH-HHHHHHhhccC---CCcCCCCCCcccCChhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP-LL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~-~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~ 220 (270)
....++.++........++..++........+....... .. ..++++.+.+. .+..+..+|+||+||++++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 112224444321111124444443322222221111111 11 13566666653 2455678999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999999999999999988777777664 22677777653
No 84
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=7.1e-25 Score=190.58 Aligned_cols=177 Identities=18% Similarity=0.142 Sum_probs=121.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 36789999997522 6799999999999999999999999999999999985 788884 3332110 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCC----------CCccHHHHHHHHHhhccCC--CcCCCCCCcccCCh
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~r 216 (270)
....++.++.... +.++..++........+.. .........++++.+++.. +..+..+|+||+||
T Consensus 74 ~~~i~~v~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 74 RLGIGRTFQIPRLF--PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred hcCEEEEecccccc--cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 1122344443211 1244444443322221111 0111223456677776643 44567999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 999999999999999999999999987777766664 23777887754
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7.8e-25 Score=196.36 Aligned_cols=182 Identities=14% Similarity=0.066 Sum_probs=128.6
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
.++++||++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4789999999974211 1237899999999999999999999999999999999985 888884 4442110
Q ss_pred -----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhh
Q 024225 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 149 -----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~ 219 (270)
.....+++++.. .++. .++.++..+.....+...........++++.+++. .+..+..+|+||+||+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 011233555531 1221 35555544433334432222223456777877775 245677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+.++..+|++||+|||+..||+.....+.+++. ..|+++|+.+.
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999987777776664 23777777653
No 86
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.1e-25 Score=187.99 Aligned_cols=176 Identities=18% Similarity=0.119 Sum_probs=121.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------CC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------PD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------p~ 150 (270)
++++|+++.|++.. +++|+||++++| +++|+||||||||||+++|+|++. |++|++ +++.... ..
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 46789999997632 679999999999 999999999999999999999985 788874 3332111 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++.++.... ..++..++........+...........++++.+++.. +..+..+|+||+||+.++.++..+++
T Consensus 73 ~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 122244443321 12344444433222222221111233456666666543 45667899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 9999999999999888888777763 2677777653
No 87
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.91 E-value=1e-24 Score=186.22 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=120.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP-----DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p-----~~ 151 (270)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++..... ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 36789999997532 7799999999999999999999999999999999985 778873 33321110 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++..+.... +..++.++........+ .+.....++++.+.+.. +..+..+|+|++||++++.++..++++
T Consensus 74 i~~~~q~~~~~--~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFY--PNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccC--ccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22244443211 12344444333222222 12344566677776643 445678999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 999999999999888777766652 267777664
No 88
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=8.3e-25 Score=186.29 Aligned_cols=174 Identities=11% Similarity=0.000 Sum_probs=119.4
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC------
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP------ 149 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p------ 149 (270)
++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 468899997532 6799999999999999999999999999999999985 777773 333210 00
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....++..+... + +..+..++........+.........+.++++.+++.. +..+..||+|++||+.++.++..
T Consensus 74 ~~~~i~~~~q~~~~-~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFAL-I-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhh-c-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 112223333221 1 12344443333222222221112334556777766643 45667899999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+++++|+|||+..+|...++.+.++++. .|+++|+.+
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999999888877777752 267777764
No 89
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=1.2e-24 Score=201.17 Aligned_cols=174 Identities=12% Similarity=0.063 Sum_probs=126.6
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-----CCC-------
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-----VKP------- 148 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-----~~~------- 148 (270)
++.+.|+.. .+++|+||++++||+++|+|+||||||||+++|+|++. |++|++ +++. ...
T Consensus 29 ~~~~~~g~~----~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLV----VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCE----EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 566667653 37899999999999999999999999999999999996 888884 4442 100
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....+++++...+ +.++..++..+.....++..........++++.+++.. +.++..+|+||+||++++.++
T Consensus 102 ~~r~~~i~~vfQ~~~l~--p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 102 RLRTHRVSMVFQKFALM--PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HHhcCCEEEEECCCcCC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 01223355543322 23566666655443344433223345567788777754 556779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
..+|+++|+|||+..||+..++.+.+++. ..|+++|+.++.
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999999988777777664 248999988753
No 90
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-24 Score=190.45 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=122.4
Q ss_pred EEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 78 l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
++++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 367899999975 22 6799999999999999999999999999999999985 888884 4442111 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC----CcCCCCCCcccCChhhhhhhhc
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++.++.... +.++..++........+.........+.++++.+++.. +..+..+|+||+||++++.++.
T Consensus 74 ~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 1122244443221 12444444433222222211112234567777777653 4456789999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
.+++++|+|||+..+|....+.+.+++.. .|+++|+.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999999999999999777766665542 267777664
No 91
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=1e-24 Score=200.69 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=121.0
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C--------CCceEEeecCCCCcc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P--------PDVATVLPMDGFHLY 163 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~--------p~~g~~i~~dg~~~~ 163 (270)
+++|+||+|++||+++|+||||||||||+++|+|++. |++|++ +++... . .....++.++....
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~- 83 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF- 83 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC-
Confidence 7899999999999999999999999999999999996 888884 444211 0 11223344443222
Q ss_pred ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 164 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe 241 (270)
+++++.++..+.....+...........++++.+++.. +.++..+|+||+||+++++++..++++|++|||+..+|+
T Consensus 84 -~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~ 162 (363)
T TIGR01186 84 -PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162 (363)
T ss_pred -CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 23566666655444444432223345667777777753 557779999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc--------cceEEeccccch
Q 024225 242 GVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 242 ~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
..++.+.+.+. ..||++|+.++.
T Consensus 163 ~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea 193 (363)
T TIGR01186 163 LIRDSMQDELKKLQATLQKTIVFITHDLDEA 193 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 88777777664 248999998764
No 92
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=1.1e-24 Score=181.16 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=113.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++ +|+.|. +.+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~ 61 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL----------------RPTSGR-VRL 61 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc----------------CCCCCe-EEE
Confidence 36789999997521 23679999999999999999999999999999999998 677888 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+.. .+ ....+...++ ++...... .++.+++ +|+|++||++++.++..+++++|+|||+
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 8865432 11 1123334444 33322222 3666666 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 237 LFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
..+|...++.+.+++. ..|+++|+.+
T Consensus 125 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 125 SHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999988777777665 2367777764
No 93
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.7e-24 Score=177.33 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=117.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-------CCCC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-------VKPP 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-------~~~p 149 (270)
+.+++|.+.|+... =..+++|+.||+|+|+||||||||||+++|+|+.. |.+|++ +++. ..+|
T Consensus 2 l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAERP 72 (231)
T ss_pred ccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccCC
Confidence 56788999998743 45678899999999999999999999999999983 666663 2221 1122
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCC-----CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-----~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~ 222 (270)
..++++++. ++ .++++.+|.. +|.. ...+.+.+..++..++++ .+..+.++|||++||+++++.
T Consensus 73 --VSmlFQEnN-LF-aHLtV~qNig-----LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 73 --VSMLFQENN-LF-AHLTVAQNIG-----LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred --hhhhhhccc-cc-hhhhhhhhhc-----ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 222333332 11 2244433321 2221 122334455556666664 355677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+.-+..|+++||||..||+..+.++..++. ..+.|+|..+.+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 999999999999999999998888888776 337788877543
No 94
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=7.5e-25 Score=183.55 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=113.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++|+++.| +++++||++++|++++|+||||||||||+++|+|++ +|+.|. +
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i 57 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR----------------PPASGE-I 57 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCce-E
Confidence 368999999988 569999999999999999999999999999999998 677888 7
Q ss_pred ecCCCCccccccCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
.++|..+.. .......++..++ ++.. ......++.+++..... +|+||+||++++.++..+++++|
T Consensus 58 ~~~g~~~~~-----~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 58 TLDGKPVTR-----RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred EECCEECCc-----cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence 788865432 1111122333444 3321 11222466666655322 99999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK 261 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~ 261 (270)
+|||+..+|...++.+.+++.. .|+++|+.
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 9999999999887777776652 26666665
No 95
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1e-24 Score=193.65 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=120.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---- 149 (270)
+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 378899999997532 7799999999999999999999999999999999985 778873 3332110 0
Q ss_pred ---CceEEeecCCCC-ccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++.++... +.. .+..++........+...........++++.+++. .+..+..+|+||+||++++.++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHhheEEEeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 112224444221 111 12222222211222221111112334566665553 2455679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999999999888777777652 2677777643
No 96
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=205.53 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=142.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCccc-CCCC--------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASS-FDSQ-------- 145 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~-~~~~G~~-~~~~-------- 145 (270)
++++++||++.|......+.+++||||++.+||++||+|+|||||||+++.|.|++... ....|++ +++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999987655567899999999999999999999999999999999999521 1124663 4442
Q ss_pred ---CCCCCceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC----CcCCCCCCcccCChh
Q 024225 146 ---VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV 217 (270)
Q Consensus 146 ---~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv 217 (270)
...+....+++++.....++-++......+....++ ...........++++.+++.. +.|+++|||||+||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 113344455888887777655554433333333333 223334455677888888753 248889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.++.+++.+|++||.|||+..||...+.++.++++ -.+||+||..+
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V 217 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV 217 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH
Confidence 99999999999999999999999999999999888 23899999843
No 97
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.6e-25 Score=183.38 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=113.0
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|++ +|..|. +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~ 59 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL----------------KPDSGE-IKV 59 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EEE
Confidence 35789999997532 679999999999999999999999999999999998 677888 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+... ....+...++ ++........++.+++. +|+||+||+.++.++..+++++++|||+
T Consensus 60 ~g~~~~~~-------~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 60 LGKDIKKE-------PEEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred CCEEcccc-------hHhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 88654321 1122334444 33322222235566654 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 237 LFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
..+|...++.+.+++.. .|+++|+.+
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 99999888887777762 266666654
No 98
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.6e-25 Score=184.20 Aligned_cols=153 Identities=22% Similarity=0.290 Sum_probs=112.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|++ +|+.|. +.+
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i~~ 59 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE----------------EPDSGS-ILI 59 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCceE-EEE
Confidence 36789999997632 679999999999999999999999999999999998 677888 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+.. .+ ..........++ ++........++.+++... +|+|++||+.++.++..+++++|+|||+
T Consensus 60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8865432 11 001122333443 2221211123555665543 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 237 LFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
..+|...++.+.+++.. .|+++|+.+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999877777776642 256666653
No 99
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=1.9e-24 Score=195.41 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=169.0
Q ss_pred eeeeecccCccccccccccccccccccchhhccccC-----ccceEEeccchhhhhhhh-------cccccccccceecC
Q 024225 38 SFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQR-----EIPVVEARCMDEVYDALA-------QRLLPTSALASNVN 105 (270)
Q Consensus 38 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~ 105 (270)
.+.+.. ....+.+|+.+++.|++.+....+...+. ..+++++++|...|.-.. ..+.+++++||++.
T Consensus 233 ~G~ivE-~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~ 311 (534)
T COG4172 233 HGEIVE-TGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLR 311 (534)
T ss_pred ccEEee-cCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEec
Confidence 344443 33578889999999999877777665433 234799999999995321 23678999999999
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------CC--CceEEeecCCCCccccccCcccChH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------PP--DVATVLPMDGFHLYLSQLDAMEDPK 174 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------~p--~~g~~i~~dg~~~~~~~l~~~~~~~ 174 (270)
+|+.+||+|+||||||||...|.+++ +..|.+ |++... .| ..-+++++|.|--.++.+++.+-..
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 99999999999999999999999999 566884 655321 22 3457799999988887788766665
Q ss_pred HHHHhcCC--CCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH
Q 024225 175 EAHARRGA--PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (270)
Q Consensus 175 ~~~~~~g~--~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~ 249 (270)
+....++- .......++.+.++.+++.. +.|+.+|||||+||++++.++.++|+++++|||++.||-..+.++.+
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 55555542 22233455667777888764 57889999999999999999999999999999999999999999999
Q ss_pred hhcc--------ceEEeccc
Q 024225 250 MFDE--------KCYATSFK 261 (270)
Q Consensus 250 ~~~~--------~i~v~~~~ 261 (270)
+++. -+||+||.
T Consensus 468 LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 468 LLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHHHHhCCeEEEEeccH
Confidence 8882 26777776
No 100
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.2e-24 Score=195.07 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=126.7
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
+++++||++.|+.... ...+|+|+||+|++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3789999999974211 1237799999999999999999999999999999999985 888873 4432110
Q ss_pred -----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhh
Q 024225 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVED 219 (270)
Q Consensus 149 -----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~ 219 (270)
.....++.++.. .++. .++.++..+.....+.+.......+.++++.+++.. +..+..+|+||+||+++
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 011223555431 2221 244444443333334322222234566677777642 45667999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+.++..++++||+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 999999999999999999999988887777765 23777777653
No 101
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-24 Score=189.11 Aligned_cols=177 Identities=18% Similarity=0.147 Sum_probs=120.0
Q ss_pred EEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---- 149 (270)
++++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 367899999975 22 6799999999999999999999999999999999985 788874 4432111 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~ 215 (270)
....++.++.... ..+++.++....... .+...........++++.+++.. +..+..+|+||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 74 RQLRRQIGMIFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHhccEEEcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 1122244443211 113443333221100 01111112234456677766643 4566799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
|++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999777766666642 3677777654
No 102
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=1.1e-24 Score=196.49 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=114.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------CCceEEeecCCCCcccccc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------PDVATVLPMDGFHLYLSQL 167 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------p~~g~~i~~dg~~~~~~~l 167 (270)
+|+|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++... . ...|. +.++... ...+
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~q~~~~--~~~~ 81 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VPQYASV--DEDL 81 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ecCCCCC--CCCC
Confidence 7799999999999999999999999999999999985 888884 333211 1 11232 4444322 1224
Q ss_pred CcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHH
Q 024225 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (270)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~ 245 (270)
++.++..+.....+...........++++.+++.. +..+..||+||+||+.++.++..+|++||+|||+..+|+..++
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 161 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 55555544333334322222234567777777653 5566799999999999999999999999999999999998777
Q ss_pred HHHHhhcc-------ceEEecccc
Q 024225 246 DVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 246 ~l~~~~~~-------~i~v~~~~~ 262 (270)
.+.+++.. .|+++|+.+
T Consensus 162 ~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 162 AIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHH
Confidence 77666652 266667664
No 103
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=192.71 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=123.4
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C--
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P-- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p-- 149 (270)
|.+++++||++.|++.. .+++|+||++++||++||+|+||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 ~~~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGSK---EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCCC---ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 35789999999996321 26799999999999999999999999999999999985 788874 3432111 0
Q ss_pred ---CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++..+.. .+. ..++.++........++..........++++.+++.. +..+..+|+||+||+.++.++
T Consensus 75 ~~~~~i~~v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHhheEEEecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 11222444431 111 1344443332222222211111223456666666543 456779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
..++++||+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999999999977777766664 22677777643
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.6e-24 Score=187.37 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=122.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCccc-CCCCCC---C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASS-FDSQVK---P 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll-----~~~~~~~G~~-~~~~~~---~ 148 (270)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++ . |++|++ +++... .
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 46789999997633 779999999999999999999999999999999998 6 788884 433211 0
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccCCC--cC--CCCCCcccCChh
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQGS--VY--APSFDHGVGDPV 217 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~~~--~~--~~~~S~g~~~rv 217 (270)
.....++.++... + .+++.++........+.... .......++++.+++... .. +..||+||+||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred hHHHHHHhhEEEEecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 0112235554432 2 24554444332222222110 012345567777766532 23 478999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 201 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ 201 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence 999999999999999999999999877777776652 367777765
No 105
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=193.97 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=126.4
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
.++++||++.|++... ...+++|+||++++||++||+||||||||||+++|+|++. |++|++ +++.....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5789999999974210 1236799999999999999999999999999999999986 888883 44421100
Q ss_pred ------CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhh
Q 024225 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 150 ------~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~ 219 (270)
....++.++.. .++ .+++.++..+.....+...........++++.+++. .+..+..+|+||+||+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 11223555431 122 134444443322222221111223456677777774 245677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+.++..++++||+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999999999999999877777776662 2677777653
No 106
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=1.3e-24 Score=187.94 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=115.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
+.++++++.|+... +++|+||++++|++++|+||||||||||+++|+|++. |++ |. +.+
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~-------------G~-i~~ 81 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDS-------------GT-VTV 81 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCc-------------eE-EEE
Confidence 77889999998744 7799999999999999999999999999999999983 444 44 344
Q ss_pred CCCCcc--------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 158 DGFHLY--------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 158 dg~~~~--------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
+|.... .+.+++.++........+...........++++.+.+.. +..+..+|+|++||++++.++..++
T Consensus 82 ~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 161 (224)
T cd03220 82 RGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP 161 (224)
T ss_pred CCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 432211 112333333332222222211111123445565555543 4456799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 162 ~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999999977666666554 23677777643
No 107
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=1.7e-24 Score=189.63 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=120.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCCC---
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVKP--- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~~--- 148 (270)
++++||++.|++.. +++|+||++++||+++|+|+||||||||+++|+|++. |+ +|++ +++....
T Consensus 2 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 2 IEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred EEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEccccc
Confidence 67899999997632 6799999999999999999999999999999999985 66 7773 3332111
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----C--CcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----G--SVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----~--~~~~~~~S~g~~~ 215 (270)
.....+++++.. ++. .+..++........+. ...........+++.+++. . +..+..+|+||+|
T Consensus 75 ~~~~~~~~~i~~v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred cchHHHHhheEEEecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHH
Confidence 011222444322 111 3333333322222221 1111123345667776664 2 3456799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
|+.++.++..+++++|+|||+..+|...+..+.+++.. .|+++|+.+
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~ 204 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ 204 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHH
Confidence 99999999999999999999999999877777766652 377778775
No 108
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=1.2e-24 Score=189.90 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=119.4
Q ss_pred EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
++++||++.|+ +.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHHH
Confidence 67899999997 422 6799999999999999999999999999999999985 778873 3332110
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~ 215 (270)
.....++.++..... .+++.++....... ++...........++++.+++.. +..+..+|+||+|
T Consensus 75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ 152 (243)
T ss_pred HHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 011222444432111 13333332211000 00001112234456677666543 4566789999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|++++.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999999977776666654 23677777654
No 109
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=189.35 Aligned_cols=183 Identities=17% Similarity=0.095 Sum_probs=123.5
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC--C
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--P 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--p 149 (270)
|+.++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++.-. .|++|++ +++.... +
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 45789999999997632 679999999999999999999999999999999998400 1257773 3332110 0
Q ss_pred -----CceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
....++.++.... ..+++.++........+.. .......+.++++.+++. .+..+..+|+|++||
T Consensus 77 ~~~~~~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred HHHHhccEEEEeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 1122344443221 1244444443322111111 011123345667766653 244567999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
++++.++..+++++++|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999888877777763 3677776643
No 110
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=190.30 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=122.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCce
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVA 152 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g 152 (270)
+.++++||++.|++.. +|+++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .....
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 5699999999997633 6799999999999999999999999999999999985 778874 333211 01112
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~il 230 (270)
.++.++..... ..++.++... +... .......++++.+++.. +..+..+|+||+||++++.++..+++++
T Consensus 84 ~~v~q~~~l~~--~~tv~enl~~-----~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 84 RLMFQDARLLP--WKKVIDNVGL-----GLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEEecCccCCC--CCcHHHHHHh-----cccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22444432211 1233332221 1111 11234566777777653 4556799999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 231 IVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 231 Ild~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999988877766664 22778887653
No 111
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=3.9e-24 Score=184.98 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=124.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
++++++||++.|++.. +++|+||++++||+++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 4689999999997533 7799999999999999999999999999999999985 888884 343211 11
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++..+.. ++. .+..++........+ .........++++.+++.. +..+..+|+|++||+.++.++.
T Consensus 79 ~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPT-LFG--DTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEecccc-ccc--ccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11223444432 221 234333322111111 1112334567788777742 4567799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 99999999999999999888777765552 2677777653
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=188.89 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=122.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 478999999997633 6799999999999999999999999999999999985 777873 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhh
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~ 219 (270)
.....++.++.... ..++..++.... ....+...........+.++.+++.. +..+..+|+||+||+++
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hhHHHHHhheEEEecCcccc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 01122244433211 113333333211 11122211111233455666666643 44567899999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+.++..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999888888777762 2677777643
No 113
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=188.83 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=119.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
.+++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 2 ATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred ceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4689999999997532 6799999999999999999999999999999999985 788873 333211 00
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....+++.+..... .++..++........+ ...........++++.+++.. +..+..+|+|++||++++.++
T Consensus 75 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 75 RARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 11222444432111 1333333322111111 111111223456666665543 445678999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
..+++++|+|||+..+|...++.+.+++. ..|+++|+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 99999999999999999987776665554 236777765
No 114
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=195.64 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=128.0
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
.++++||++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|++. |++|++ +++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 4889999999975311 1237899999999999999999999999999999999996 888883 332100
Q ss_pred -------------------------CCCceEEeecCC-CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC
Q 024225 148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (270)
Q Consensus 148 -------------------------~p~~g~~i~~dg-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~ 201 (270)
....| +++++. ..+.. .++.++..+.....+...........++++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceE-EEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 00123 355542 11121 24444443333333433222234456778877774
Q ss_pred ---CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 202 ---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
.+..+..+|+||+||++++.++..++++||+|||+..+|+...+.+.++++ ..|+++|+.+.
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence 245677999999999999999999999999999999999987777777664 23788888753
No 115
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=1.7e-24 Score=188.87 Aligned_cols=177 Identities=16% Similarity=0.151 Sum_probs=122.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------- 148 (270)
++++|+++.|++.. +++|+||++++||++||+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 2 IEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred EEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHHH
Confidence 67899999997532 6799999999999999999999999999999999985 788873 3332111
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.....++.++.... +.+++.++..+... ..+...........++++.+++.. +..+..||+||+||+.++.++.
T Consensus 75 ~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 01122244443211 11344333322111 112211112234456777776643 4556789999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999988887777774 23777777654
No 116
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=179.47 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=112.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++ +|..|. +.+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~----------------~~~~G~-i~~ 61 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY----------------DPTSGE-ILI 61 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCE-EEE
Confidence 36789999997631 12679999999999999999999999999999999998 677888 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+.. .+ ....+...++ ++...... .++.+++ +|+|++||+.++.++..+++++|+|||+
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 8764321 11 1122334454 33322221 3556665 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 237 LFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
..+|...++.+.+++.. .|+++|+.+
T Consensus 125 ~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 125 SALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 99999888777777652 256666654
No 117
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.1e-24 Score=184.21 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=115.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|++. ..|+.|. +.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--------------~~~~~G~-i~ 67 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--------------AGVITGE-IL 67 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc--------------CCCcceE-EE
Confidence 57899999999752111226799999999999999999999999999999999862 1367788 77
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~ 235 (270)
++|..+. .......++ ++........++.+++....... .+|+|++||+.++.++..+++++|+|||
T Consensus 68 ~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP 135 (192)
T cd03232 68 INGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEP 135 (192)
T ss_pred ECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCC
Confidence 7776432 112233444 32222222235555554422111 8999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 236 YLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 236 ~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+..+|...++.+.+++.. .|+++|+.+
T Consensus 136 ~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 136 TSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 999999877777776652 277778765
No 118
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=1.1e-24 Score=181.76 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. ..+++++||++++||+++|+||||||||||+++|+|++ +|..|. +.+
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~ 61 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL----------------KPQQGE-ITL 61 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC----------------CCCCCE-EEE
Confidence 36789999997531 12679999999999999999999999999999999998 677888 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+.. . ....+...++ ++...... .++.+++ +..+|+|++||+.++.++..+++++|+|||+
T Consensus 62 ~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 62 DGVPVSD-----L--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred CCEEHHH-----H--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 8864321 1 1123334454 33322222 3566666 6789999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 237 LFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
..+|...++.+.+++.. .|+++|+.+.
T Consensus 127 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 127 VGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999888777777652 3677777643
No 119
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.90 E-value=3.9e-24 Score=188.59 Aligned_cols=181 Identities=14% Similarity=0.133 Sum_probs=122.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC------CC
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV------KP 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~------~~ 148 (270)
++++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 4699999999997632 6799999999999999999999999999999999985 788874 33321 10
Q ss_pred --C--------CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225 149 --P--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG 214 (270)
Q Consensus 149 --p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~ 214 (270)
+ ....++..+........++..++..+.....+... ........++++.+.... +..+..+|+||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 0 01223444432111111222222221111111110 011223456677776642 356679999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||++++.++..+++++|+|||+..+|....+.+.+.+. ..|+++|+.+.
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~ 214 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 99999999999999999999999999987777777653 22677777644
No 120
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.5e-24 Score=191.09 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=121.8
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---------
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------- 148 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------- 148 (270)
.++|+++.|+... +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 4568999998743 6799999999999999999999999999999999985 788873 3332110
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.....++.++.... +.+++.++........+.........+.++++.+++.. +..+..+|+||+||++++.++.
T Consensus 99 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 99 LRRKKISMVFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhcCcEEEEecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 11123344443221 12444444433222222211112234556677776653 4566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
.++++||+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999999987777777654 2267777764
No 121
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=2.6e-24 Score=189.81 Aligned_cols=177 Identities=17% Similarity=0.181 Sum_probs=121.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
+++++||++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|++ +++... .+
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 478999999997633 6799999999999999999999999999999999985 888884 333211 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc--
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG-- 224 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~-- 224 (270)
....++..+....+ .+++.++........+...........++++.+++.. +..+..+|+|++||++++.++.
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 11223444432211 1344333222111111111111233456677766643 5567799999999999999998
Q ss_pred ----cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 225 ----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 225 ----~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
.+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 48999999999999999877776666642 267777764
No 122
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=1.7e-24 Score=187.62 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=118.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C-----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P----- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~----- 148 (270)
++++||++.|++.. +++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46789999997532 7799999999999999999999999999999999985 888884 333211 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---cCCCcCCCCCCcccCChhhhhhhhcc
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---~~~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
.....++..+... + +.++..++..+.....+. ........+++.+. ...+..+..+|+|++||+.++.++..
T Consensus 74 ~~~i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 74 RAGIAYVPQGREI-F-PRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HhCeEEeccCCcc-c-CCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1112234444321 1 123443433322222111 11122234444443 22355677899999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
+++++|+|||+..+|...++.+.+++.+ .|+++|+.+.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 9999999999999999888877776652 2677777753
No 123
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.4e-24 Score=187.59 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=122.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~--- 148 (270)
.|+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++.... |++|++ +++....
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 36799999999997532 6799999999999999999999999999999999863111 367773 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~ 215 (270)
.....++.++.. ++. .+..++..+.....+.. .......+.+.++.+++.. +..+..+|+||+|
T Consensus 80 ~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 011222444432 121 23444433322222221 1111233445566655421 3456789999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 99999999999999999999999999888777777652 3677777643
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=3.8e-24 Score=186.74 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=123.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 588999999997632 6799999999999999999999999999999999985 888873 3432111
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHHh-cC-------CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChh
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPV 217 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g-------~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv 217 (270)
.....++..+.... +.++..++....... .+ ...........++++.+++.. +..+..+|+|++||+
T Consensus 75 ~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 75 ARAGIGRKFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HhcCeeEeccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 01122244333211 123444433322110 00 000112234566777776653 456678999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
.++.++..+++++++|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999999999999999999999988777777665 23677777643
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-24 Score=192.26 Aligned_cols=178 Identities=16% Similarity=0.092 Sum_probs=121.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++||++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|++ +++.... +
T Consensus 2 l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 2 IRLENVSYSYPDG---TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred EEEEEEEEEcCCC---CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHHH
Confidence 6889999999631 126799999999999999999999999999999999985 788874 3332110 0
Q ss_pred -CceEEeecCCCC-ccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 -DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 -~~g~~i~~dg~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....+++++... +.. .+..++..+.....+...........++++.+++.. +..+..||+||+||+.++.++..
T Consensus 76 ~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhccc--chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 112224444321 111 344444333222223221112233456667666643 45667999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+++++|+|||+..+|+..+..+.+++. ..|+++|+.+.
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~ 198 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 999999999999999977766666654 22677777654
No 126
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.90 E-value=3.3e-24 Score=189.88 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=124.1
Q ss_pred eEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--
Q 024225 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-- 148 (270)
+++++||++.|++.. ....+++|+||++++||++||+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 588999999996310 01237799999999999999999999999999999999985 888884 4432110
Q ss_pred --------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 --------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r 216 (270)
.....++.++........+++.++........ ++..........++++.+++. .+..+..+|+||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 01123355543211112234433332222111 222112233456777777764 245667999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++++.++..++++||+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 999999999999999999999999976666655554 22677777643
No 127
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=1.4e-24 Score=186.91 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=117.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 46789999997632 6799999999999999999999999999999999985 788873 333211 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l-~~~--~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....++.++.... +.++..++........+ ..........+++.+ ... .+..+..+|+|++||+.++.++..
T Consensus 74 ~~~i~~~~q~~~~~--~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 74 RAGIGYVPEGRRIF--PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred hcCeEEeccccccC--CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 1122244443211 12344333332221111 111122234455554 222 345667899999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999999987777777765 2266777664
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-24 Score=191.56 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=122.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
++++++||++.|++.. ..+++++||+|++||+++|+||||||||||+++|+|+++ |++|++ +++.....
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 4689999999996421 227799999999999999999999999999999999985 777773 44321110
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....++.++..... ...++.++........+...........++++.+++.. ...+..+|+|++||++++.++..
T Consensus 79 ~~~~i~~~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 79 VRRQVGMVFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred HhhheEEEEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 11222444431011 11234333332222222221111233456666666543 45667999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
+|++||+|||+..+|+..++.+.+++. ..|.++|+.+
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 999999999999999987777777664 1266666654
No 129
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.2e-24 Score=179.24 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=106.4
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++||++.|++.. ++++++|++++||+++|+||||||||||+++|+|++ +|+.|. +.+
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~----------------~~~~G~-v~~ 59 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY----------------KPDSGE-ILV 59 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EEE
Confidence 36789999997632 679999999999999999999999999999999998 788888 788
Q ss_pred CCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~ 237 (270)
+|..+.. .+ ..+..+...++ .+++|+||+||+.++.++..+++++++|||+.
T Consensus 60 ~g~~~~~--~~---~~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 60 DGKEVSF--AS---PRDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred CCEECCc--CC---HHHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 8864322 00 00111112222 12299999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 238 FLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 238 ~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.+|...++.+.+++.. .|+++|+.+
T Consensus 112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999888888777752 266777654
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4e-24 Score=187.88 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=121.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~ 148 (270)
+.+++++||++.|++.. +++|+||++++||++||+||||||||||+++|+|+++ | ++|++ +++....
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 45789999999997632 6799999999999999999999999999999999984 4 47773 3332110
Q ss_pred -----C----CceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccC------CCcCCCCCCc
Q 024225 149 -----P----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (270)
Q Consensus 149 -----p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~~------~~~~~~~~S~ 211 (270)
+ ....++.++.... ..++..++........+.. .........++++.+++. .+..+..+|+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccChHHHhhceeEEecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 0 1122244443211 1234444443222111211 111112344556665542 2345678999
Q ss_pred ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|++||++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 999999999999999999999999999999888777777652 3677777643
No 131
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-24 Score=185.08 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=112.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCC---CCceE
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT 153 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~---p~~g~ 153 (270)
.+.++||+|.|+.......+++++||++++|++++|+||||||||||+++|+|++ + |+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~~~~G~ 66 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT----------------EGNVSVEGD 66 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC----------------CCCCCcceE
Confidence 5788999999976422344789999999999999999999999999999999998 4 77888
Q ss_pred EeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhhccCCc
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
+.++|..+... .....+..++ ++........++.+++... .+..+..+|+|++||+.++.++..+++
T Consensus 67 -i~i~g~~~~~~-------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ 138 (202)
T cd03233 67 -IHYNGIPYKEF-------AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRAS 138 (202)
T ss_pred -EEECCEECccc-------hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCC
Confidence 77888654321 1112223333 2221111123555555432 344566899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
++|+|||+..+|...++.+.+++.
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHH
Confidence 999999999999977776666655
No 132
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.90 E-value=3.4e-24 Score=188.89 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=123.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
+.++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. |++|++ +++....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 3589999999997632 6799999999999999999999999999999999985 777873 3332110
Q ss_pred --------------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC---CcCCCCCC
Q 024225 149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFD 210 (270)
Q Consensus 149 --------------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S 210 (270)
.....++.++... + ..+++.++..+... ..+...........++++.+++.. +..+..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l-~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNL-W-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccchHHHHHhhceEEEecCccc-C-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 0112224444321 1 11344443332111 112111112234566777777653 34567999
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+|++||++++.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999988887777655 23777777643
No 133
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4e-24 Score=188.53 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=120.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK----- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~----- 147 (270)
..++++|+++.|++.. +|+++||++++|+++||+||||||||||+++|+|++.- .+|++|++ +++...
T Consensus 3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 4689999999997632 77999999999999999999999999999999999840 00257763 333211
Q ss_pred CC----CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.+ ....++..+.... ..+++.++........+. ..........++++.+++. .+..+..+|+|++||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred ChHHHhcceEEEccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 00 1122234332211 113444433322222221 1111112334556655542 234567899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~ 209 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ 209 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999999999999999999999877777776652 3677777653
No 134
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.90 E-value=5.7e-24 Score=183.59 Aligned_cols=180 Identities=19% Similarity=0.157 Sum_probs=123.2
Q ss_pred EEeccchhhhhhhh---cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC--C---CCC-
Q 024225 78 VEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD--S---QVK- 147 (270)
Q Consensus 78 l~~~~l~~~y~~~~---~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~--~---~~~- 147 (270)
++++||++.|++.. ....+++|+||++++||+++|+||||||||||+++|+|++. |++|++ ++ + ...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchhh
Confidence 78899999996411 11236799999999999999999999999999999999985 888884 43 2 110
Q ss_pred -C--------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCC
Q 024225 148 -P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGD 215 (270)
Q Consensus 148 -~--------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~ 215 (270)
. .....++.++... . ..+++.++........+...........++++.+++.. +..+..+|+|++|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRV-I-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred cCHHHHHHHHhcceEEEeccccc-C-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 0 0112234444321 1 12334333332222223221112234456677776643 3466799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
|++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999888887777762 277777754
No 135
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3.5e-24 Score=182.04 Aligned_cols=161 Identities=15% Similarity=0.081 Sum_probs=111.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-C-----C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-P-----D 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-p-----~ 150 (270)
++++|+++.|++.. +++++||++++||++||+||||||||||+++|+|+++ |++|++ +++.... . .
T Consensus 2 l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 2 LDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred EEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHHh
Confidence 78899999997633 6799999999999999999999999999999999985 677763 3332110 0 0
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++..+.... +..++.++..... . .. .+.....++++.+.... +..+..+|+|++||++++.++..+++
T Consensus 75 ~i~~~~q~~~~~--~~~tv~~~~~~~~-~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGIN--PYLTLRENCLYDI-H--FS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccC--cCCCHHHHHHHHH-h--cC--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 111122222111 1133333222111 0 01 11234556666665543 34556899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
++|+|||+..+|....+.+.+++.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~ 171 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQ 171 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHH
Confidence 999999999999988877777776
No 136
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=7.6e-24 Score=181.83 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=123.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CC
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PD 150 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~ 150 (270)
++++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. |++|++ +++.... ..
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence 4689999999997633 6799999999999999999999999999999999985 788874 4432111 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++..+... ...++..++........+. .......++++.+++.. +..+..+|+|++||++++.++..+++
T Consensus 83 ~i~~~~q~~~~--~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 83 FMAYLGHLPGL--KADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred ceEEeecCccc--ccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12223333221 1113444433322221121 12233456666666542 55667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++++|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 9999999999999888888777752 2777777643
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.8e-24 Score=191.28 Aligned_cols=180 Identities=16% Similarity=0.118 Sum_probs=124.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|++. ..+++++||++++||++||+||||||||||+++|+|++. |++|++ +++....
T Consensus 4 ~~l~~~~l~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYSDG---THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeCCC---CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 468999999999631 127799999999999999999999999999999999985 788873 3332110
Q ss_pred ---CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
.....++.++.. .+.. .+..++........+++...........++.+++.. +..+..+|+||+||+.++.+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFS--ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHHhhEEEEecCcchhhcc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 011223555431 1111 344444433222333322222234556667666643 55677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+..+++++|+|||+..+|...++.+.+++. ..++++|+.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 999999999999999999987776666554 22566676643
No 138
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.90 E-value=4.8e-24 Score=189.08 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=121.4
Q ss_pred ceEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-
Q 024225 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~- 148 (270)
++++++||++.|+... ....+++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4689999999996311 01237899999999999999999999999999999999985 778873 3332110
Q ss_pred --C----CceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225 149 --P----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (270)
Q Consensus 149 --p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~ 218 (270)
. ....++.++........++..++....... .+...........++++.+++. .+..+..+|+||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 0 112224443321111112222222111111 1111111123455677777763 24456789999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
++.++..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 99999999999999999999999877777666652 3677777643
No 139
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=3.9e-24 Score=181.93 Aligned_cols=169 Identities=16% Similarity=0.082 Sum_probs=116.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------D 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------~ 150 (270)
++++||++.|++.. +++++||+|++|+++||+|+||||||||+++|+|++. |++|++ +++..... .
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 36789999997633 6799999999999999999999999999999999984 777773 33321100 0
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++.++.. +. ...+..++.... .. ......+.++++.+++.. +..+..||+|++||++++.++..+++
T Consensus 74 ~i~~~~q~~~-~~-~~~tv~e~l~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 74 GLLYLGHAPG-IK-TTLSVLENLRFW-----HA-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred heEEeccccc-cC-CCcCHHHHHHhh-----cc-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111222211 11 112322222111 01 113345566777776653 44567899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK 261 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~ 261 (270)
++|+|||+..+|...++.+.+++.. .|+++|+.
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 9999999999999888888887752 25666655
No 140
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.4e-24 Score=186.50 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=121.0
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~--- 148 (270)
..++++|+++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 2 NEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred ceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence 4589999999997532 6799999999999999999999999999999999985 778873 333211 0
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhc
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.....++.++... .. .+..++...... ..........++++.+++. ....+..+|+||+||+.++.++.
T Consensus 75 ~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~ 147 (241)
T PRK14250 75 LRRKIGMVFQQPHL-FE--GTVKDNIEYGPM----LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147 (241)
T ss_pred hhhcEEEEecCchh-ch--hhHHHHHhcchh----hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 0112234444321 11 222222211100 0111223455677777664 24566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|...++.+.+.+. ..|+++|+.+.
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 9999999999999999987777766664 22777887753
No 141
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.6e-24 Score=191.67 Aligned_cols=182 Identities=10% Similarity=0.044 Sum_probs=124.7
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
.++++||++.|+.... ...+|+|+||+|++||++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3789999999964211 1237899999999999999999999999999999999985 778873 3432110 0
Q ss_pred ------CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-C--CcCCCCCCcccCChhhh
Q 024225 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-G--SVYAPSFDHGVGDPVED 219 (270)
Q Consensus 150 ------~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-~--~~~~~~~S~g~~~rv~~ 219 (270)
....+++++.. .++. .++.++..+.....++..........++++.+++. . +..+..+|+||+||+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 01222555421 1111 23333333322222322111223445677777764 2 35677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+.++..+++++|+|||+..+|+.....+.+++. ..|+++|+.+.
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 999999999999999999999988877777765 22777787654
No 142
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.2e-24 Score=190.01 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=121.9
Q ss_pred EEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------
Q 024225 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------ 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------ 148 (270)
++++||++.|++... ...+|+++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccC
Confidence 789999999975210 1236799999999999999999999999999999999985 788874 333211 0
Q ss_pred ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhh
Q 024225 149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~ 220 (270)
.....++.++.. .++. .++.++..+.....+.........+.++++.+++.. +..+..||+||+||+.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 011223444431 1111 244443332222222211111223455666666642 456679999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 99999999999999999999987777777655 2267777764
No 143
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-24 Score=188.23 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=117.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|++.. +++++||++++||++||+||||||||||+++|+|++. |++|++ +++....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTAK 76 (237)
T ss_pred cEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHHH
Confidence 4689999999997532 7799999999999999999999999999999999985 788873 3332110
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cC--CCcCCCCCCcccCChhhhhhhh
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~-~~--~~~~~~~~S~g~~~rv~~~~~l 223 (270)
.....++..+...+ +.+++.++....... .........+..+++.+. .. ....+..+|+|++||+.++.++
T Consensus 77 ~~~~~i~~~~q~~~~~--~~~tv~~~l~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 77 IMREAVAIVPEGRRVF--SRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred HHHhCEEEeccCcccC--CCCcHHHHHHHhhhc--cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 01122244433211 113333332221100 010011122333444442 22 2345678999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
..+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 99999999999999999988777777665 2267777754
No 144
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.4e-24 Score=187.28 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=122.7
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC--
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP-- 148 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~-- 148 (270)
..++++++|+++.|++.. +|+|+||++++|+++||+|+||||||||+++|+|++.-. +|++|++ +++....
T Consensus 9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 356799999999997532 679999999999999999999999999999999998400 1267773 3332110
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++.. ++. .+..++........+...........++++.++.. .+..+..+|+|++|
T Consensus 85 ~~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred cchHHHHhhhEEEEecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHH
Confidence 011222443322 111 34444443322222321111112234556655442 23456689999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|++++.++..+++++|+|||+..+|...+..+.+++.. .|+++|+.+.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~ 215 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ 215 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 99999999999999999999999999888887777753 3677777643
No 145
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.90 E-value=1.2e-23 Score=185.05 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=119.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++. ...+ +
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~-~ 71 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIG-Y 71 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEE-E
Confidence 4689999999997632 6799999999999999999999999999999999985 777774 2221 1122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
+.++...... ++ ..... ...+........+..+++.+++.. +..+..||+||+||++++.++..+++++|+
T Consensus 72 v~q~~~~~~~--l~--~~~~~---~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLYLDTT--LP--LTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred eccccccccc--cC--hhHHH---HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4444321110 11 01111 111111122344566777776653 445678999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999987777766653 23677777653
No 146
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.8e-24 Score=188.11 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=123.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 6 ~~l~~~nl~~~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCCCC--ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence 4689999999996311 126799999999999999999999999999999999985 788874 3332110
Q ss_pred -CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhc
Q 024225 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 149 -p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.....++.++.. .+. ..+..++........++........+.++++.+++. .+..+..||+||+||+.++.++.
T Consensus 81 ~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred HhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 011223444431 111 134444433222222221111122345667766664 34566799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 225 ~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
.+++++|+|||+..+|....+.+.+++. ..|+++|+.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 9999999999999999977777666664 23677777643
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.9e-24 Score=189.74 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=122.9
Q ss_pred ceEEeccchhhhhhhhc--ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C---
Q 024225 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~--~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--- 148 (270)
++++++|+++.|++... ...+|+++||+|++|++++|+|+||||||||+++|+|++. |++|++ +++... .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 56899999999974211 1237899999999999999999999999999999999985 777873 333211 0
Q ss_pred ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
.....+++++.. .+.. .+..++..+.....+...........++++.+++.. +..+..||+||+||+.++.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 157 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG 157 (280)
T ss_pred HHHHhhheEEEecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 011222444421 1111 122222222112222221111233456666666543 4567799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++..+|+++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 9999999999999999999987777766665 22777777654
No 148
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-24 Score=209.15 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=131.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------ 147 (270)
.++++++||++.|+.......+++|+||++++||++||+||||||||||+++|+|++. |++|++ +++...
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 4579999999999642222347899999999999999999999999999999999985 788874 332100
Q ss_pred ---------------CCCceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccC-----CCcCC
Q 024225 148 ---------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYA 206 (270)
Q Consensus 148 ---------------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~-----~~~~~ 206 (270)
......++.++......+.+++.++..+.... .++........+.++++.+++. .+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 01112335555311111224555555443322 2332222234556778888774 24577
Q ss_pred CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
..||+||+||++++.++..++++||+|||+..||...++.+.++++. .|+++|+.+.
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~ 231 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV 231 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 89999999999999999999999999999999999877777776652 2888888744
No 149
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.90 E-value=8.3e-24 Score=185.86 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=121.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-----C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-----K-- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-----~-- 147 (270)
++++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++.. .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 3689999999997633 6799999999999999999999999999999999985 788874 33311 0
Q ss_pred -CC--------CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225 148 -PP--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG 214 (270)
Q Consensus 148 -~p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~ 214 (270)
.+ ....++.++........++..++........+. ..........++++.+++.. +..+..+|+||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 00 012224444321111111222222111111111 11111234556777777642 345678999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||++++.++..+++++|+|||+..+|+...+.+.+++. ..|+++|+.+.
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999988877766554 22778877643
No 150
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=3.2e-24 Score=177.27 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=108.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++++++.|++. + .+++++||++++|++++|+||||||||||+++|+|++ +|+.|. +.+
T Consensus 1 i~~~~~~~~~~~~-~--~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~----------------~~~~G~-i~~ 60 (166)
T cd03223 1 IELENLSLATPDG-R--VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW----------------PWGSGR-IGM 60 (166)
T ss_pred CEEEEEEEEcCCC-C--eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-EEE
Confidence 3678999999642 1 2679999999999999999999999999999999998 566666 444
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
++. ...++ ++..... ..++.+++... ....+|+|++||++++.++..+++++|+|||+
T Consensus 61 ~~~-----------------~~i~~~~q~~~~~-~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 61 PEG-----------------EDLLFLPQRPYLP-LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCC-----------------ceEEEECCCCccc-cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 442 01111 1111111 12555565543 45789999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 237 LFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
..+|...++.+.+++.. .|+++|+.+
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~ 149 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPS 149 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChh
Confidence 99999888888887764 477777754
No 151
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=187.50 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=119.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
++++++|+++.|++.. ..+++|+||++++||+++|+||||||||||+++|+|++. |++|++ +++.....
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4689999999997521 226799999999999999999999999999999999984 667763 33321100
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....++.++...... ..+..++........+.........+..+++.+++.. +..+..+|+|++||++++.++..
T Consensus 81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 011223433210000 0111122211111122211111223456667666543 45667999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+++++|+|||+..+|....+.+.+++. ..|+++|+.+.
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 999999999999999977776666554 22677777654
No 152
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=7.9e-24 Score=179.51 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=118.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---D 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---~ 150 (270)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... . .
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 36789999997633 6799999999999999999999999999999999985 777773 3332110 0 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
...++..+.. + ...++..++........+ .......+.++.+++.. +..+..+|+|++||++++.++..+++
T Consensus 74 ~i~~~~q~~~-~-~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 74 NILYLGHLPG-L-KPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred heEEeccCcc-c-ccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 1112332221 1 111334333332222111 11234556677666643 45667899999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999877777777652 367777664
No 153
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.90 E-value=3.8e-24 Score=178.95 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=113.4
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecC
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~d 158 (270)
+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++ +|+.|. |.++
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~----------------~~~~G~-v~~~ 59 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL----------------KPSSGE-ILLD 59 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCcE-EEEC
Confidence 3678999997622 679999999999999999999999999999999998 778888 7788
Q ss_pred CCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 159 g~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
|..+.. .+ ........++.. ++++.+++.. +..+..+|+|++||++++.++..+++++|+|||+
T Consensus 60 g~~~~~--~~----~~~~~~~i~~~~--------q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 60 GKDLAS--LS----PKELARKIAYVP--------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred CEECCc--CC----HHHHHHHHhHHH--------HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 865432 11 111222333311 1555555443 3456789999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 237 LFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
..+|...++.+.+++. ..|+++|+.+.
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999977777766654 23677776653
No 154
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=9e-24 Score=187.44 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=122.2
Q ss_pred cceEEeccchhhhhhh-----hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC
Q 024225 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~-----~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~ 148 (270)
|++++++||++.|++. .....+++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 3578999999999731 001236799999999999999999999999999999999985 778873 3332110
Q ss_pred ---C-------CceEEeecCCCCccccccCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccC
Q 024225 149 ---P-------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG 214 (270)
Q Consensus 149 ---p-------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~ 214 (270)
+ ....++.++.........+..++....... .+.........+.++++.+++.. +..+..+|+|++
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 0 112234444311111112322222111111 11111112234566777776642 456678999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||+.++.++..++++||+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 99999999999999999999999999976666666554 23777777643
No 155
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.9e-24 Score=186.58 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=122.4
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC--
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP-- 148 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~-- 148 (270)
....++++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|++. -..|++|++ +++....
T Consensus 10 ~~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CCceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 345799999999997532 6799999999999999999999999999999999973 001367773 3331110
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~ 214 (270)
.....++.++.. +.. .+..++........ +...........++++.+++. .+..+..+|+||+
T Consensus 86 ~~~~~~~~~~i~~~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred ccchHHHhcceEEEecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 011222444432 111 33333332221111 111111123345566666542 2445678999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
||+.++.++..+++++|+|||+..+|....+.+.+++.. .|+++|+.+.
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 999999999999999999999999999887777777752 3677777643
No 156
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=1.8e-23 Score=183.96 Aligned_cols=177 Identities=13% Similarity=0.112 Sum_probs=120.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCccc-CCCCCCC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASS-FDSQVKP--- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~----~~G~~-~~~~~~~--- 148 (270)
.++++||++.| +.. +++++||++++|++++|+|+||||||||+++|+|++. | ++|++ +++....
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 58999999999 322 6799999999999999999999999999999999985 6 78874 3332111
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccCChhhhhh
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~~rv~~~~ 221 (270)
.....++.++....+.+..+..++........+.. .....+.++++.+.+.. +..+..+|+|++||+.++.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 11122355543211111122222221111122321 12245567777777654 4566799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++..++++||+|||+..+|....+.+.+++. ..|+++|+.+.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 9999999999999999999977666666554 12677776643
No 157
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=6.2e-24 Score=185.06 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=109.9
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C----CceEEeecCCCCccccccC
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P----DVATVLPMDGFHLYLSQLD 168 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p----~~g~~i~~dg~~~~~~~l~ 168 (270)
+|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... . + ....++..+...+. ..++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~t 111 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW-WDLP 111 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccC-CCCc
Confidence 7899999999999999999999999999999999985 888884 333211 0 0 01111221211111 1234
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (270)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~ 246 (270)
..++........+............+++.+++.. +..+..+|+||+||+.++.++..+++++|+|||+..+|...++.
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 4333333222223221111223445666655543 45567899999999999999999999999999999999988888
Q ss_pred HHHhhcc--------ceEEecccc
Q 024225 247 VSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 247 l~~~~~~--------~i~v~~~~~ 262 (270)
+.+++.. .|+++|+.+
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHH
Confidence 8877652 267777764
No 158
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=188.80 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=123.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ccc-CCCCCCC----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASS-FDSQVKP---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~---G~~-~~~~~~~---- 148 (270)
+++++|+++.|++.. ..+++++||++++|+++||+||||||||||+++|+|++. |+. |++ +++....
T Consensus 5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 589999999996522 226799999999999999999999999999999999985 665 663 3332111
Q ss_pred ----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
...| +++++..... ...++.++..+.....+.........+.++++.+++.. +..+..+|+||+||+.++.+
T Consensus 80 ~~~~~~ig-~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVG-IVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheE-EEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1122 2454432111 11344444433222233211111233456677666653 55677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+..++++||+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 206 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE 206 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999999987777766664 22677777643
No 159
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=191.43 Aligned_cols=182 Identities=14% Similarity=0.065 Sum_probs=124.3
Q ss_pred ceEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C----
Q 024225 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~---- 148 (270)
++++++||++.|+.... ...+|+|+||+|++|+++||+|+||||||||+++|+|++. |++|++ +++... .
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence 57999999999974211 1237899999999999999999999999999999999995 788874 332100 0
Q ss_pred ------------------CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCC
Q 024225 149 ------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (270)
Q Consensus 149 ------------------p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (270)
.....++.++.. .+.. .++.++..+.....+...........++++.+++. ....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 011223455431 1211 23333332221122221111123345667777664 24556
Q ss_pred CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
..+|+||+||++++.++..++++||+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 7999999999999999999999999999999999988877777764 2377778775
No 160
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=185.08 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=122.5
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~ 148 (270)
.++++++|+++.|++.. +++|+||++++||+++|+|+||||||||+++|+|++. | ++|++ +++....
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 34799999999997532 6799999999999999999999999999999999984 4 46773 3332110
Q ss_pred ---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcc------CCCcCCCCCCcc
Q 024225 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (270)
Q Consensus 149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~------~~~~~~~~~S~g 212 (270)
.....++.++... +. .++.++..+.....+.... .......+.++.+.. ..+..+..+|+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred cccccHHHHhhceEEEeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 1112234544322 11 4554444332222221100 111233455555543 134566799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+||+++++++..+++++|+|||+..+|....+.+.+++.. .|+++|+.+.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~ 211 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ 211 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999887777777752 3677777754
No 161
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=7.2e-24 Score=184.93 Aligned_cols=179 Identities=18% Similarity=0.113 Sum_probs=118.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++||++.|++.. +|+|+||++++|++++|+||||||||||+++|+|++. ..|++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCcceEEECCEecCCCCHHHhh
Confidence 46789999997532 6799999999999999999999999999999999841 12788874 3332110 0
Q ss_pred Cc-eEEeecCCCCccccccCcccChHHHHHhc-CCCC--Ccc----HHHHHHHHHhhccCC---CcCCC-CCCcccCChh
Q 024225 150 DV-ATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPW--TFN----PLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPV 217 (270)
Q Consensus 150 ~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g~~~--~~~----~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~rv 217 (270)
.. ..++.++.... ..++..++........ +... ..+ ...+.++++.+++.. +..+. .+|+||+||+
T Consensus 76 ~~~i~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 76 RAGLFLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred ccceEeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 11 12233333211 1133333332221111 1100 011 233456677776642 33444 4999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 999999999999999999999999888777777652 3677777653
No 162
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=1.7e-23 Score=200.36 Aligned_cols=174 Identities=10% Similarity=-0.006 Sum_probs=116.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------ 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------ 149 (270)
+++++||++.|++.. +|+++||++++|+++||+||||||||||+|+|+|++. |++|++ +++.....
T Consensus 3 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~~ 75 (490)
T PRK10938 3 SLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQL 75 (490)
T ss_pred eEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHHH
Confidence 689999999997633 6799999999999999999999999999999999984 666663 22211000
Q ss_pred --CceEEeecCCCCccccccCcccC--hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMED--PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
..+. +.++... .. ++...+ ........... ......+.++++.+++.. +..+..||+||+||++++.++
T Consensus 76 ~~~i~~-~~q~~~~-~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 76 QKLVSD-EWQRNNT-DM--LSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred HHHhce-eccCcch-hh--cccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 0111 2222110 00 000000 00000000000 011234556777776643 566779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
..+++++|+|||+..||+...+.+.+++.. .|+++|+.+
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999999999999888777777763 267777764
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.6e-24 Score=188.02 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=119.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK----- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~----- 147 (270)
.+++++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|++.. .+|++|++ +++...
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 4699999999997633 67999999999999999999999999999999999731 01467763 333211
Q ss_pred CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225 148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv 217 (270)
.+ ....++.++.. ++. .++.++........++. ........++++.+... .+..+..||+||+||+
T Consensus 88 ~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 00 11222443332 111 13333332221111211 11112334455555432 2445678999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+++.++..+++++|+|||+..+|....+.+.+++.. .|+++|+.+
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~ 214 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ 214 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999887777777752 377777764
No 164
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.8e-24 Score=188.17 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=123.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---- 149 (270)
+++++||++.|++. ..+++++||+|++||++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 ~l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDG---TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCC---CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 37889999999631 126799999999999999999999999999999999985 778874 3332110 0
Q ss_pred ---CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l 223 (270)
....+++++.. .+.. .++.++..+.....+...........++++.+++. .+..+..+|+||+||++++.++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 11223555531 1111 34444443222222221111123455667776664 3456679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|...+..+.+++. ..++++|+.+.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999999999999999987777766665 23777777654
No 165
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.89 E-value=4.5e-24 Score=181.44 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=111.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. ..|+.|. +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--------------~~p~~G~-i~~ 61 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK--------------YEVTEGE-ILF 61 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc--------------CCCCccE-EEE
Confidence 36789999997532 7799999999999999999999999999999999941 0577787 778
Q ss_pred CCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
+|..+.. .. .....+...++ ++........++.+++ ......+|+||+||+.++.++..+++++|+|||+
T Consensus 62 ~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 62 KGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred CCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 8865432 11 00111122333 3322111112333333 1222489999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 237 LFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 237 ~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
..+|...++.+.+++. ..|+++|+.+.
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 9999977766666654 23777777653
No 166
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.89 E-value=7.7e-24 Score=186.03 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=119.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------- 148 (270)
++++||++.|++.. +++|+||++++||+++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 36789999997532 6799999999999999999999999999999999985 778873 3332110
Q ss_pred ------------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCccc
Q 024225 149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV 213 (270)
Q Consensus 149 ------------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~ 213 (270)
.....++..+.... +..+..++...... ..+...........++++.+++.. +..+..+|+|+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 01122244433221 11344333332111 112211111223456666666543 34556899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+||++++.++..+++++|+|||+..+|...+..+.+++. ..|+++|+.+.
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 999999999999999999999999999977776666554 23778887654
No 167
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2e-23 Score=184.93 Aligned_cols=179 Identities=16% Similarity=0.071 Sum_probs=121.3
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
.++++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 35799999999997532 6799999999999999999999999999999999985 788874 333211 00
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHH-hcC---CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRG---APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g---~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
....++.++.... +.++..++...... ..+ ...........++++.+++.. +..+..+|+||+||++++
T Consensus 82 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 82 AFARKVAYLPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhhheEEeccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 1122244432211 11333332221100 001 011111234456677766643 456679999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999987776666664 1267777764
No 168
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=7.8e-24 Score=208.50 Aligned_cols=161 Identities=15% Similarity=0.053 Sum_probs=120.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
..++++||++.|+... ..+|+|+|++|++||+|||+|+||||||||+|+|.|++ .|..|. |
T Consensus 470 g~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly----------------~p~~G~-I 530 (709)
T COG2274 470 GEIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY----------------KPQQGR-I 530 (709)
T ss_pred ceEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-E
Confidence 3589999999998753 24679999999999999999999999999999999999 677777 8
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----------------------------CCc---
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------GSV--- 204 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----------------------------~~~--- 204 (270)
.+||+++..- +....++..|+..+...-...++.+|+.++ -+.
T Consensus 531 ~~dg~dl~~i------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 531 LLDGVDLNDI------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EECCEeHHhc------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 8888776542 222355555553332222223444444332 111
Q ss_pred -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
....+||||+||+++++++..+|++||+||++..+|+...+.+.+-+. ..|+|+|..
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 123689999999999999999999999999999999976666665554 557888876
No 169
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=4e-24 Score=180.99 Aligned_cols=160 Identities=15% Similarity=0.096 Sum_probs=114.4
Q ss_pred eEEeccchhhhhhhh--cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~--~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.+++++|++.|++.. ....+++++||++++|++++|+||||||||||+++|+|++. .+|..|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~--------------~~~~~G~- 67 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT--------------GLGVSGE- 67 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------------CCCCceE-
Confidence 478999999997520 01227799999999999999999999999999999999971 0356677
Q ss_pred eecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
+.++|..+.. ...+...++ ++........++.+++...... ..+|+|++||+.++.++..+++++|+|
T Consensus 68 i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~LS~G~~qrv~laral~~~p~illlD 136 (194)
T cd03213 68 VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RGLSGGERKRVSIALELVSNPSLLFLD 136 (194)
T ss_pred EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 6777764321 012223343 2222111113444444432211 189999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 234 GNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
||+..+|...++.+.+++.. .|+++|+.+
T Consensus 137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 99999999888888777762 267777764
No 170
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=1.4e-23 Score=176.89 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=111.2
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----C-----CceEEeecCCC-Cccc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----P-----DVATVLPMDGF-HLYL 164 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p-----~~g~~i~~dg~-~~~~ 164 (270)
+++++||++++|+++||+||||||||||+++|+|+++ |++|++ +++.... + ....++.++.. .++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 6799999999999999999999999999999999985 788874 3332110 0 01222444431 1111
Q ss_pred cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 165 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~ 242 (270)
.+..++........+.........+.++++.+++.. +..+..+|+|++||+.++.++..+++++|+|||+..+|..
T Consensus 84 --~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 --ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 244343332222222211111223456666666543 4566799999999999999999999999999999999998
Q ss_pred hHHHHHHhhcc-------ceEEeccccc
Q 024225 243 VWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 243 ~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
.++.+.+++.. .|+++|+.+.
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 88888777762 2677777654
No 171
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=206.43 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=132.4
Q ss_pred ceEEeccchhhhhhhh-------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~ 147 (270)
++++++||++.|+... ....+++++||+|++||++||+||||||||||+|+|+|+++ |++|++ +++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 5799999999996210 11347899999999999999999999999999999999985 889984 444211
Q ss_pred -C---------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC---CCcCCCCCCccc
Q 024225 148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (270)
Q Consensus 148 -~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~ 213 (270)
. .....+++++.+....+.+++.++........+.. .......+.++++.+++. .+.++.+||+||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 0 01233466665322222345544443322222321 111223456778887774 356778999999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+||++++.++..++++||+|||+..||...+..+.+++. ..|+++||.+.
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~ 526 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999988888888773 24888888754
No 172
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=185.00 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=121.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--- 148 (270)
.+.++++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|++.-. .|++|++ +++....
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 34799999999997532 679999999999999999999999999999999998400 0267773 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCC-C-CccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-W-TFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG 214 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~-~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~ 214 (270)
.....++.++.. +.. .++.++..+.....+.. . ......+..+++.+++.. +..+..+|+||+
T Consensus 93 ~~~~~~~~~i~~v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 011122444322 111 23333333222112221 1 111223455666666532 345678999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||++++.++..++++||+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 999999999999999999999999999888777777752 366777654
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=185.08 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=123.7
Q ss_pred cCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC
Q 024225 72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP 148 (270)
Q Consensus 72 ~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~ 148 (270)
+...++++++||++.|+... +|+|+||++++||++||+||||||||||+++|+|++.-. .|++|++ +++....
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 15 PEEEIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCCCeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 44456799999999997532 679999999999999999999999999999999998300 1367873 3332110
Q ss_pred ---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (270)
Q Consensus 149 ---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g 212 (270)
.....++.++... +. .++.++........+... ......+.++++.+.+. .+..+..+|+|
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG 167 (267)
T ss_pred cccCChHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence 1112334444322 11 244444433222222211 11122344556665542 23456799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++||++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 223 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ 223 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999999999999999999999877777776662 367777664
No 174
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=183.19 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=121.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|++.. +++++||++++||+++|+|+||||||||+++|+|++.- ..+++|++ +++....
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 5789999999997532 67999999999999999999999999999999999740 00157773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....++.++... +. .+..++..+.....+.. .........++++.+++. .+..+..+|+|++||
T Consensus 79 ~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred cHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1112335554432 21 34444443322222221 111112334556665542 244567999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++++.++..+++++|+|||+..+|...+..+.++++. .|+++|+.+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~ 207 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ 207 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH
Confidence 9999999999999999999999999877777776662 377777764
No 175
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=1.3e-23 Score=180.99 Aligned_cols=181 Identities=18% Similarity=0.103 Sum_probs=122.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
+++++|+++.|+...+...+++++||++++|++++|+|+||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 36789999999742112337799999999999999999999999999999999985 777773 3332110 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
....+++.+... + ..++..++......... .........+.++++.+++.. +..+..+|+|++||+.++.+
T Consensus 78 ~~~~~~i~~~~q~~~~-~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNL-L-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHhheEEEcCChhh-c-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 112223333221 1 11344443332221111 111111234566777777653 34566899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
+..+++++|+|||+..+|....+.+.++++ ..|+++|+.+
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 999999999999999999988766666664 2377777764
No 176
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=182.80 Aligned_cols=182 Identities=11% Similarity=0.069 Sum_probs=120.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~---- 148 (270)
..++++|+++.|++.. +++|+||+|++|+++||+|+||||||||+++|+|++.. ..|++|++ +++....
T Consensus 3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 4589999999997532 67999999999999999999999999999999999720 00257773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~r 216 (270)
.....++.++...+. .++..++........+.. .........+.++.+++.. ...+..+|+|++||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 011222444433211 134433332221112211 1111223455566665432 24566899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
++++.++..+++++|+|||+..+|....+.+.++++ ..|+++|+.+.
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 999999999999999999999999987777776665 33777777643
No 177
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.1e-23 Score=180.61 Aligned_cols=171 Identities=20% Similarity=0.205 Sum_probs=109.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p 149 (270)
++++|+++.|++. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 3 l~~~~l~~~~~~~---~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 3 IEFENVNFSYDEK---KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred EEEEEEEEecCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHHh
Confidence 6889999999742 126799999999999999999999999999999999984 666663 2221100 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------C----CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~~S~g~~~r 216 (270)
....++..+.. ++. .+..++. .+... ......+...++.+.. + ....+..+|+||+||
T Consensus 77 ~~i~~~~q~~~-~~~--~tv~~~~-----~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 77 SMIGVVLQDTF-LFS--GTIMENI-----RLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred hhEEEecCCch-hhh--hHHHHHH-----hccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 01112232221 110 0111111 11111 1111222222222111 1 123456899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..||...++.+.+++.. .|+++|+.+.
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST 200 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 9999999999999999999999999888777776653 3677776643
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.89 E-value=1.7e-23 Score=179.36 Aligned_cols=174 Identities=15% Similarity=0.139 Sum_probs=118.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~ 151 (270)
++++||++.|+. .+.++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 367899999963 3479999999999999999999999999999999985 888874 3332110 011
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++.++.... ..++..++....................++++.+++.. +..+..||+||+||++++.++..++++
T Consensus 72 i~~v~q~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 22344443211 12344443322111100011112234456677766643 445669999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
+|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999877777665542 267777764
No 179
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=9.3e-24 Score=202.71 Aligned_cols=178 Identities=17% Similarity=0.151 Sum_probs=124.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++|+++.|++.. +++|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++....
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4689999999997632 6799999999999999999999999999999999985 888884 4432110
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhc---CC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
.....++.++.... ..+++.++..+..... +. ........+.++++.+++.. +..+..||+||+||++++
T Consensus 76 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 76 SQEAGIGIIHQELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHhCCEEEEEcchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 11122355543221 1244444332211111 10 00011234566777777654 455679999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
.++..+|++||+|||+..||+..++.+.+++.. .|+++|+.+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999999999999877777666652 377777764
No 180
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-23 Score=185.50 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=120.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++|+++.|++.. +|+++||++++|++++|+|+||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 488999999997532 6799999999999999999999999999999999985 788873 3332110
Q ss_pred CCceEEeecCCCCccccccCcccChHHHH-H---hcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH-A---RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~---~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
.....++.++.... ..++..++..... . .++.....+...+..+++.+++.. +..+..+|+|++||+.++.+
T Consensus 75 ~~~i~~~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 75 ARRLALLPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred hhheEEecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 01122244443211 1133333222110 0 011111112233455666666543 55667999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+..+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 999999999999999999988877777764 2267777764
No 181
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-23 Score=202.06 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=116.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
-.|+++||++.|+..+ .+.+|+|+||+|++||+|||+||||+||||++++|.+++ .|+.|. |
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY----------------~PtsG~-I 525 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY----------------DPTSGR-I 525 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCCe-E
Confidence 3599999999999854 366789999999999999999999999999999999999 788888 8
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc----------------------------cCCCc---
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR----------------------------NQGSV--- 204 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~----------------------------~~~~~--- 204 (270)
.+||.++.+. +..++++.+|...|...-.-.++.|||. .|-+.
T Consensus 526 llDG~~i~~~------~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 526 LLDGVPISDI------NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred EECCeehhhc------CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 8888876541 2334455555432221111123333333 22221
Q ss_pred -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+.-++|||||||+++++++..+|+|||+||.+..||.+.-..+++.++
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHH
Confidence 223889999999999999999999999999999999987777777776
No 182
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-23 Score=183.21 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=119.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++..+. +++|++ +++....
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 2 PIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred ceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 4689999999997532 6799999999999999999999999999999999973100 267773 3331110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....++.++... +. .+..++........+.. .........+.++.++.. .+..+..+|+||+||
T Consensus 78 ~~~~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 1122334444322 11 34433333222112211 111112234455555543 234567899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~ 206 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 9999999999999999999999999888777777652 367777765
No 183
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=177.57 Aligned_cols=160 Identities=46% Similarity=0.766 Sum_probs=143.9
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
-+..+.+|++|+.|+||||++.++... ||.....++..... ...+++||||++++..++.+++++..++++|.+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 456799999999999999999988875 67765555544333 456799999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhhc--cCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccc
Q 024225 184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFK 261 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~--~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~ 261 (270)
|+||...++++++.++ ...+++.|.|+|+.++.+...+.+....+|+|+||.++++|++.|+.+-++++.+||++++.
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~ 269 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY 269 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence 9999999999999888 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccC
Q 024225 262 ETYFNREA 269 (270)
Q Consensus 262 ~~~~~r~~ 269 (270)
+++..|.+
T Consensus 270 ~~a~~RVa 277 (323)
T KOG2702|consen 270 EAAEERVA 277 (323)
T ss_pred HHHHHHHH
Confidence 99988864
No 184
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=186.59 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=121.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK----- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~----- 147 (270)
+++++++|++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++.-. .|++|++ +++...
T Consensus 38 ~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 38 TVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred ceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4699999999997632 679999999999999999999999999999999998310 0367773 333111
Q ss_pred C----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225 148 P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 148 ~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv 217 (270)
. .....++.++... +. .++.++........+... .....+.++++.+++. .+..+..||+||+||+
T Consensus 114 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred chHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH
Confidence 0 0112234444321 11 133333332222222221 1123345566666543 2455679999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+++.++..++++||+|||+..+|....+.+.+++.. .|+++|+.+
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~ 240 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQ 240 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999877777777652 367777764
No 185
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=2.6e-23 Score=175.96 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=113.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-CC--CceE
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-PP--DVAT 153 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~p--~~g~ 153 (270)
++++|+++.|+.. .+.++||++++|++++|+|+||||||||+++|+|++. |++|++ +++... .. ....
T Consensus 2 l~~~~l~~~~~~~-----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQK-----NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYCT 73 (195)
T ss_pred eEEEEeeEEECCc-----EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhEE
Confidence 6789999999652 2234999999999999999999999999999999984 677763 333211 00 0111
Q ss_pred EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
++..+.... ...+..++........+ ......++++.++... +.....+|+|++||+.++.++..+++++|
T Consensus 74 ~~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 74 YIGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred eccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 122221111 11333333322111111 1234455556655542 44567899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+|||+..+|....+.+.+++.. .|.++|+.+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 9999999999888888777641 256666653
No 186
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=187.19 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=118.9
Q ss_pred ccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC
Q 024225 71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK 147 (270)
Q Consensus 71 ~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~ 147 (270)
.+...++++++||++.|++.. +|+++||++++||+++|+||||||||||+++|+|++.-. .+++|++ +++...
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred cCCCCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 444556899999999998632 679999999999999999999999999999999997300 0146663 333111
Q ss_pred -----CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225 148 -----PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (270)
Q Consensus 148 -----~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g 212 (270)
.+ ....++.++... +. .+..++........+... .......+.++.+... .+..+..+|+|
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred ccccchhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 00 111223333221 11 122222221111111100 0112223344443331 23456689999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++||+.++.++..++++||+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~ 221 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQ 221 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999999888888887763 367777664
No 187
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.5e-23 Score=179.31 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=118.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~ 151 (270)
++++|+++.|++.. .++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+ ..
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 36789999997521 39999999999999999999999999999999985 888884 333211 00 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++.++..... .++..++..................+.++++.+++.. +..+..||+||+||+.++.++..++++
T Consensus 72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 233555543211 1333333322111000001112234556677766643 455679999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999988777777664 22677776643
No 188
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.89 E-value=1.8e-23 Score=180.42 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=121.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCceE
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVAT 153 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g~ 153 (270)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .....
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 36789999997532 6799999999999999999999999999999999985 888874 3332111 11122
Q ss_pred EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
++..+.... ..++..++........+ .+.....++++.+++.. +..+..+|+|++||+.++.++..++++++
T Consensus 74 ~~~q~~~~~--~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 74 SLIESPPLY--ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEcCCCCcc--ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 233333211 11344444332222222 12345567777777653 44566899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 999999999987777777665 23677777643
No 189
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=6.7e-23 Score=165.23 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=126.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc--cCCCC----CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQ----VK--- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~--~~~~~----~~--- 147 (270)
.++++++.+.||... +|-||+|+.+.||.+.++||||+|||||+|.|.-+-- |.+|+ +-+++ ..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 378999999999866 8899999999999999999999999999999987763 55665 11111 00
Q ss_pred ------CCCceEEeecCCCCccccccCcccCh-HHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhh
Q 024225 148 ------PPDVATVLPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (270)
Q Consensus 148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~ 218 (270)
+.+.|. ++ ..|+++ +++++.++. +...+..|+..........++++.+.+. .+.++-.+|||+.||++
T Consensus 75 k~i~~lr~~vgm-vf-qqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 75 KAIRDLRRNVGM-VF-QQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHHhhhh-hh-hhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 011222 11 123332 224443332 2223345554444444555666666654 46777799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc-------eEEeccccch
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-------CYATSFKETY 264 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~-------i~v~~~~~~~ 264 (270)
+++++.+++++++.|||+..+|++...++.+++++. +.|+|..+++
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va 204 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence 999999999999999999999999999999999843 6677766544
No 190
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-23 Score=184.20 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=121.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P--- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p--- 149 (270)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|++ +++... . +
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 3689999999997532 7799999999999999999999999999999999985 888883 333211 0 0
Q ss_pred --Cc-eEEeecCCCCccccccCcccChHHHHHh-------cCCCC------C--ccHHHHHHHHHhhccCC--CcCCCCC
Q 024225 150 --DV-ATVLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW------T--FNPLLLLNCLKNLRNQG--SVYAPSF 209 (270)
Q Consensus 150 --~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~-------~g~~~------~--~~~~~~~~~l~~l~~~~--~~~~~~~ 209 (270)
.. ..++.++.... +.++..++....... .++.. . .......+.++.+++.. +..+..+
T Consensus 77 ~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 77 IARMGVVRTFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHhcCeEEeccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 01 11234433211 123443333221110 01100 0 01123445566666543 4566799
Q ss_pred CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|+||+||+.++.++..+|+++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999987777777664 23677777643
No 191
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.6e-23 Score=182.46 Aligned_cols=181 Identities=16% Similarity=0.102 Sum_probs=121.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC---C
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP---P 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~---p 149 (270)
++++++|+++.|+... +++++||++++|+++||+||||||||||+++|+|+.....+ ++|++ +++.... +
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 4689999999997632 67999999999999999999999999999999997321113 46773 3332110 0
Q ss_pred ------CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccCC------CcCCCCCCcccCCh
Q 024225 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~r 216 (270)
....+++++... .. .+..++........+... ........++++.+++.. ...+..+|+||+||
T Consensus 78 ~~~~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 78 QVDELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 112334444322 11 244343332222222211 111223455666665531 34456899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
++++.++..+++++|+|||+..+|...++.+.++++. .|+++|+.+.
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 207 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999999999999999999999999888888777762 3777777643
No 192
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-23 Score=201.53 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=123.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~---- 148 (270)
++++++||++.|++.. +++|+||++++|+++||+||||||||||+|+|+|++. | ++|++ +++....
T Consensus 4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 4699999999997532 7799999999999999999999999999999999984 4 67774 3332110
Q ss_pred ----CCceEEeecCCCCccccccCcccChHHHHHhc--CC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhh
Q 024225 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (270)
Q Consensus 149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~ 219 (270)
.....++.++.... ..+++.++..+..... +. ........+.++++.+++.. +..+..||+||+||+++
T Consensus 77 ~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 77 RDTERAGIAIIHQELALV--KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred HHHHHCCeEEEEeccccC--CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 01122355543211 1234444332211111 11 11111234566777777653 45667999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+.++..+++++|+|||+..||+..+..+.+++.. .|+++|+.+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~ 204 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN 204 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 9999999999999999999999888887777652 367777764
No 193
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-23 Score=187.90 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=121.7
Q ss_pred ceEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----C
Q 024225 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----P 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-----~ 148 (270)
..++++||++.|++... ...+++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++... .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence 45899999999975310 1236799999999999999999999999999999999985 788874 333110 0
Q ss_pred --C-----CceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChh
Q 024225 149 --P-----DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 149 --p-----~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv 217 (270)
+ ....++.++.. .+.. .+..++..+.....+.........+.++++.+.+. .+..+..+|+||+||+
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 0 11222444431 1111 23333333222222221111112344566666652 2456679999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
+++.++..++++||+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999999999999999977777665544 2367777765
No 194
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.5e-24 Score=194.83 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=118.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--------- 147 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--------- 147 (270)
+++ ||+|.|++. . .|+||++++||+++|+||||||||||+++|+|++. |++|++ +++...
T Consensus 2 l~~-~l~k~~~~~-----~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 2 LEL-NFKQQLGDL-----C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred eEE-EEEEEeCCE-----E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 566 999999762 1 38999999999999999999999999999999985 788873 333110
Q ss_pred CC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 148 PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 148 ~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
.+ ....++.++.. ++ +.+++.++..+ +.. ......+.++++.+++.. +..+..+|+||+||++++.++
T Consensus 72 ~~~~~~i~~v~q~~~-l~-~~~tv~enl~~-----~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDAR-LF-PHYKVRGNLRY-----GMA-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcc-cC-CCCcHHHHHHh-----hhh-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 00 11222444432 11 22444443322 111 112345567777777653 456779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
..+++++|+|||+..+|...++.+.+.+. ..|+++|+.+.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 99999999999999999987776666654 24888888754
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=3.1e-23 Score=199.52 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=123.4
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p- 149 (270)
.++++++||++.|++.. +|+|+||++++|+++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 9 PPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred CceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998633 6799999999999999999999999999999999985 777874 3332110 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
....++.++..... .+++.++..+ +.. .........++++.+++.. +..+..||+||+||++++.+
T Consensus 82 ~~~~~~i~~v~q~~~~~~--~~tv~e~l~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFP--NLSVKENILF-----GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHhCCEEEEeccCccCC--CCcHHHHhhc-----ccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 11222444432111 1333222211 111 1111234566777777653 45667999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+..++++||+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999999999999999999888777777652 3677777643
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=182.78 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=121.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|+... +++++||++++||+++|+|+||||||||+++|+|++.. ..+++|++ +++....
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 3689999999997532 67999999999999999999999999999999999730 00257773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....++.++.. ++. .++.++........+... ........++++.+.+. .+..+..+|+||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 79 DLVELRKEVGMVFQQPT-PFP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hHHHhhccEEEEecCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 111222444432 221 344444433222222211 11112334555555542 234566899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 208 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ 208 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 9999999999999999999999999888777777762 3677777643
No 197
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.8e-23 Score=196.37 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=128.4
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p- 149 (270)
.++++++|++|.|++.. +|+++||++.+||++||+|.||||||||+|+|+|.+. |++|++ +++.... |
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 45799999999999854 9999999999999999999999999999999999995 777773 4443221 1
Q ss_pred ---Cce-EEeecCCCCccccccCcccChHHHHHh---cCCC-CCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225 150 ---DVA-TVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 150 ---~~g-~~i~~dg~~~~~~~l~~~~~~~~~~~~---~g~~-~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~ 219 (270)
..| .+|+++---. +++++.+|.-..+.- +|+. +.........+++.++.. .+.....+|.+++|.+++
T Consensus 79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 111 2244443322 236665555332221 2221 111122334566666653 345566999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY 264 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~ 264 (270)
+.++..++++||+|||+..|++.-.+.+.++++ -.|||+|..++-
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV 208 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 999999999999999999999866666666665 339999987553
No 198
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=2.4e-23 Score=201.04 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=124.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCCC-
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVKP- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~~- 148 (270)
++++++||++.|+.......+++++||++++||++||+||||||||||+|+|+|++. | ++|++ +++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 469999999999631111237799999999999999999999999999999999984 3 57773 3332110
Q ss_pred ----------CCceEEeecCCCCccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcc
Q 024225 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHG 212 (270)
Q Consensus 149 ----------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g 212 (270)
.....+++++......+.++..++...... ..+.........+.++++.+++.. +.++..+|+|
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 011223555532101111222222211111 113222122344567777777743 4567799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
|+||++++.++..+|++||+|||+..||+...+.+.+++.. .|+++|+.+.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 219 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI 219 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 99999999999999999999999999999887777766642 3788888754
No 199
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.4e-23 Score=181.63 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=119.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC-----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP----- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~----- 148 (270)
.++++||++.|++.. +++|+||++++||+++|+||||||||||+++|+|++.-. .+++|++ +++....
T Consensus 3 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 588999999997632 679999999999999999999999999999999986300 0157773 3332110
Q ss_pred ----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 149 ----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv 217 (270)
.....++..+.. +.. .+..++..+.....+... ........+.++.+... .+..+..||+||+||+
T Consensus 79 ~~~~~~~i~~~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 79 VNQLRKRVGMVFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred hHHHhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 011222444322 111 344444433222222211 11122334455555432 2345678999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
+++.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 206 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 99999999999999999999999987777776665 2367777764
No 200
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.8e-24 Score=203.27 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=123.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
++++++|+++.|++.. +++|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++.... +
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 4699999999997633 6799999999999999999999999999999999985 788884 3332110 0
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHH----hcCCC---CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPV 217 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv 217 (270)
....++.++..... .+++.++...... ..+.. .......+.++++.+++.. +..+..||+||+||+
T Consensus 77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 11223444432211 1333333221110 01110 0011234456777776653 456679999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
+++.++..++++||+|||+..||....+.+.+++.. .|+++|+.+
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999999888887777652 377777764
No 201
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.2e-23 Score=181.00 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=117.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--~~ 151 (270)
++++||++.|++. ..++||++++|+++||+||||||||||+++|+|++. |++|++ +++.... + ..
T Consensus 2 l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (232)
T PRK10771 2 LKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRRP 72 (232)
T ss_pred eEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhcc
Confidence 6889999999752 248999999999999999999999999999999985 888884 4442111 0 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
..++..+..... .++..++...... .+.. ...+...+.++++.+++.. +..+..+|+||+||+.++.++..+++
T Consensus 73 i~~~~q~~~~~~--~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 73 VSMLFQENNLFS--HLTVAQNIGLGLN-PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred EEEEeccccccc--CCcHHHHHhcccc-cccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 223444432211 1333332221110 0110 1112234566777776643 45667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 999999999999987766666554 2266677665
No 202
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.8e-23 Score=185.16 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=124.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++||++.|++.. ...+++++||++++||+++|+|+||||||||+++|+|++. |++|++ +++....
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 689999999997421 2236799999999999999999999999999999999996 888884 4432111
Q ss_pred CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225 149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 149 p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
.....++.++.. .+.. .++.++..+.....+............+++.+++. .+..+..+|+|++||+.++.++..
T Consensus 80 ~~~i~~v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred hcceEEEEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 011223555531 1111 34444443222222221111112344556655553 244567999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999988877777764 23777777655
No 203
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.5e-23 Score=181.50 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=117.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK-- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~-- 147 (270)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. | ++|++ +++...
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 2 NKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred CeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEccc
Confidence 5789999999997532 6799999999999999999999999999999999984 3 46663 332111
Q ss_pred --CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCCCCCCcccC
Q 024225 148 --PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (270)
Q Consensus 148 --~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~ 214 (270)
.+ ....++..+... +. .++.++........+.... .......+.++.++.. .+..+..+|+|++
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred ccchHHHHhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 00 112224433321 11 2333333222111121110 1112233445554432 2345568999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 205 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ 205 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 999999999999999999999999999877777776662 367777664
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.1e-23 Score=182.20 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=120.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|+... +++++||+|++||+++|+||||||||||+++|+|++. ..++++|++ +++....
T Consensus 11 ~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 11 EVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred ceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 5799999999997532 6799999999999999999999999999999999983 001156773 3332110
Q ss_pred C-----CceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 P-----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 p-----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
. ....+++++..... .+..++..+.....+... ........++++.++.. .+..+..+|+||+||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFP---QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCcccc---cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 0 11222444432211 133333322222222111 11112334556665543 234566899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+.++.++..+++++++|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~ 215 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 9999999999999999999999999888777777763 377777764
No 205
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=1.6e-23 Score=184.42 Aligned_cols=176 Identities=13% Similarity=0.079 Sum_probs=120.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C-----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P----- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p----- 149 (270)
++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|+++ |++|++ +++... . +
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 57889999997633 7799999999999999999999999999999999985 788873 333211 0 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHH-h---cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....++..+.... ...++.++...... . .+.....+...+.++++.+.+.. +..+..+|+|++||++++.++
T Consensus 75 ~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 75 RRVALVEQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred hheEEecccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 0122244332111 11344333322110 0 11111112234556677766643 456679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999888877777762 266677654
No 206
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=6.1e-23 Score=168.04 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=117.8
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
++.++++|+.|.|+... +|++||++-+.|++|.|+|.||||||||++||.=+- .|..|.
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE----------------~P~~G~- 62 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE----------------KPSAGS- 62 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc----------------CCCCce-
Confidence 35689999999999866 789999999999999999999999999999998876 444454
Q ss_pred eecCCCCccc-----cccCc--ccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------------------------
Q 024225 155 LPMDGFHLYL-----SQLDA--MEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN-------------------------- 200 (270)
Q Consensus 155 i~~dg~~~~~-----~~l~~--~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~-------------------------- 200 (270)
|..+|..+.- .++.. ....+..+.+.|+ ++.|++-.-+++++|+-.
T Consensus 63 I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi 142 (256)
T COG4598 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI 142 (256)
T ss_pred EEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc
Confidence 4444443321 00111 1223445566676 666777666777776542
Q ss_pred C--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 201 Q--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 201 ~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
. .+.|+..+|||+.||++++++++..|++++.|||+..||+++--++...+.
T Consensus 143 ~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~ 196 (256)
T COG4598 143 AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196 (256)
T ss_pred hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHH
Confidence 1 346777899999999999999999999999999999999966555555444
No 207
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=181.51 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=122.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCccc-CCCCCC-C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASS-FDSQVK-P-- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~---~~G~~-~~~~~~-~-- 148 (270)
++++++||++.|++.. +++++||++++||+++|+||||||||||+++|+|++. ..| ++|++ +++... .
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND-LNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc-cCCCCCccceEEECCEECcCcc
Confidence 4689999999997532 6799999999999999999999999999999999852 114 47874 333211 0
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++... +. .++.++........+... ........++++.+... .+..+..+|+|++|
T Consensus 79 ~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred cchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH
Confidence 0112335554332 21 344444433222223211 11122334556655542 23456789999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
|++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 208 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence 99999999999999999999999999888888777763 377777764
No 208
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=3.4e-23 Score=183.41 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=102.0
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccC
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~ 172 (270)
..+++++||++++|+++||+||||||||||+++|+|++. |++|++ +++. .+ ++.+... ....++..++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~-~~~~~~~--~~~~~tv~en 105 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VS-VIAISAG--LSGQLTGIEN 105 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----Ee-EEecccC--CCCCCcHHHH
Confidence 457899999999999999999999999999999999984 555542 2221 00 0111111 1111333333
Q ss_pred hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHh
Q 024225 173 PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (270)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~ 250 (270)
........+............+++.+.++. +..+..+|+||+||++++.++..+++++|+|||+..+|....+.+.++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 222111123211111112234455544443 345679999999999999999999999999999999999776666666
Q ss_pred hc-------cceEEecccc
Q 024225 251 FD-------EKCYATSFKE 262 (270)
Q Consensus 251 ~~-------~~i~v~~~~~ 262 (270)
+. ..|+++|+.+
T Consensus 186 L~~~~~~g~tiIiisH~~~ 204 (264)
T PRK13546 186 IYEFKEQNKTIFFVSHNLG 204 (264)
T ss_pred HHHHHHCCCEEEEEcCCHH
Confidence 54 2367777654
No 209
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.3e-23 Score=182.73 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=121.3
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p- 149 (270)
...++++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 35689999999998632 6799999999999999999999999999999999985 778873 3432110 0
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHH-HhcCCC---CCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAP---WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~---~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
....++.++..... ..+..++..... ...+.. .......+.++++.+++.. +..+..+|+|++||+.++
T Consensus 78 ~~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 78 EVARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 11223454433221 123322221100 000000 0011223456666666543 556779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999987777766664 2367777765
No 210
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.89 E-value=2.7e-23 Score=180.83 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=112.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p 149 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 36789999996421 226799999999999999999999999999999999985 777873 3332110 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHH---------HHHHhhccC----CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQ----GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~~~----~~~~~~~~S~g~~~r 216 (270)
....++.++... +. .++.++... +.. ......+. +.++.+..+ .+..+..+|+||+||
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~nl~~-----~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 76 RQVGVVLQENVL-FN--RSIRDNIAL-----ADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hcEEEEcCCchh-cc--chHHHHhhc-----cCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 112224444321 11 232222111 101 01111111 122222111 123567999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 199 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST 199 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 9999999999999999999999999888877777752 2666666643
No 211
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=181.12 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=121.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++|+++.|++.. +++|+||++++|++++|+||||||||||+++|+|++....|++|++ +++....
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 478899999997532 6799999999999999999999999999999999973222577773 3332110
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccC------CCcCCCCCCcccCChhhhh
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv~~~ 220 (270)
.....++.++.. ++. .+..++........+... ......+.++++.+++. .+..+..+|+|++||++++
T Consensus 78 ~~~i~~~~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 78 RKNVGMVFQQPN-VFV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhhEEEEecCCc-ccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 011222444432 221 244444332222222211 11122345667776663 2345678999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
.++..+++++|+|||+..+|......+.+.+.. .|+++|+.+
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 202 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999999999999999999999888887777752 266666654
No 212
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=192.06 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=116.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
.+.+++++++|.|++. .|+++|||++++|||.||+|+||||||||+++|.|+++ |++|++ +++..+ .|
T Consensus 2 ~~~l~~~~itK~f~~~----~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGV----VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCE----EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 3578999999999974 48999999999999999999999999999999999994 555552 333211 11
Q ss_pred -----CceEEeecCCCCccccccCcccChHHHHHhc-C-C-CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g-~-~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~ 219 (270)
-.|. +.+. |.+ -+.+++.+|.-...... + . ........+.++.+.+++. .+.++..+|-|++||+++
T Consensus 75 dA~~~GIGM-VhQH-F~L-v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 75 DAIRLGIGM-VHQH-FML-VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHcCCcE-Eeec-ccc-ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 1222 2221 111 11234444332211110 0 0 0001112223334433333 344566889999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY 264 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~ 264 (270)
..++..++++||+|||+..|-+.-.+++...++ ..|||+|-.++.
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV 203 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 999999999999999999998854444444444 449999977543
No 213
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.3e-23 Score=182.39 Aligned_cols=180 Identities=13% Similarity=0.102 Sum_probs=117.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|++.. +|+++||++++|+++||+|+||||||||+++|+|++.-. .|++|++ +++....
T Consensus 20 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4699999999997533 679999999999999999999999999999999986200 1467773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....++.++... +. .+..++........+... ........+.++.+... .+..+..+|+|++||
T Consensus 96 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 0112224443321 11 133333222111111110 00112234445554442 234567899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
+.++.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 224 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHH
Confidence 999999999999999999999999987777777665 2367777764
No 214
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.89 E-value=3.8e-23 Score=182.70 Aligned_cols=178 Identities=15% Similarity=0.096 Sum_probs=120.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCCCC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVKPP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~~p-- 149 (270)
++++++||++.|++.. +++++||++.+||+++|+||||||||||+++|+|++. |+ +|++ +++.....
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 4789999999997533 6799999999999999999999999999999999985 54 3663 34321100
Q ss_pred ----------CceEEeecCCCCccccccCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccCC--CcCCCCC
Q 024225 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSF 209 (270)
Q Consensus 150 ----------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~ 209 (270)
....++.++.... +.++..++....... ++...........++++.+++.. +..+..+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccchhHHHHHhheEEEccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 0122244443221 123443333221100 00001111234456677666642 4566789
Q ss_pred CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
|+|++||++++.++..++++||+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999999999877777766652 266777764
No 215
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.7e-23 Score=180.38 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=111.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 36789999997531 126799999999999999999999999999999999985 777773 3332110 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHH---------HHHHHhhc--cC--CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR--NQ--GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~--~~--~~~~~~~~S~g~~~r 216 (270)
....++..+... .. .+..++.. ++.. ....... .+.++.+. .. .+..+..+|+|++||
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~enl~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 76 RQIGLVSQDVFL-FN--DTVAENIA-----YGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred hhEEEeCCCCee-cc--ccHHHHhh-----ccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 011223333221 11 12221111 1111 0111111 12222221 11 133466899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 198 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 9999999999999999999999999888877777752 266666654
No 216
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.88 E-value=9e-23 Score=176.33 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=116.3
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---- 148 (270)
..++++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH 83 (226)
T ss_pred cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence 346799999999997521 1237899999999999999999999999999999999984 667763 3331100
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccH--H-----HHHHHHHhh--ccC--CCcCCCCCCccc
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNP--L-----LLLNCLKNL--RNQ--GSVYAPSFDHGV 213 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~--~-----~~~~~l~~l--~~~--~~~~~~~~S~g~ 213 (270)
.....++..+.. ++. .+..++. .++.. ..... . ...+.++.+ ++. .+..+..+|+|+
T Consensus 84 ~~~~~~i~~~~q~~~-l~~--~tv~~nl-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 84 KYLHSKVSLVGQEPV-LFA--RSLQDNI-----AYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred HHHHhhEEEEecccH-HHh--hhHHHHh-----ccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 011122333321 111 1221111 11111 00000 0 012344444 222 234567899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+||+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 211 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 9999999999999999999999999999888877777762 3677777643
No 217
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.7e-23 Score=183.88 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=118.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCc
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDV 151 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~ 151 (270)
.++++||++.|++.. .+++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++.... ...
T Consensus 6 ~l~~~~l~~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCCc---EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence 488999999996311 26799999999999999999999999999999999985 777773 3432110 011
Q ss_pred eEEeecCCCCccccccCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
..++..+............++..... ...+. ..........+.++.+++.. +..+..+|+|++||++++.++..
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 22233332110000011111110000 00111 10111223455666666542 45667999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+++++|+|||+..+|+..++.+.+++. ..|+++|+.+
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999988888877775 2377777764
No 218
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.3e-23 Score=181.04 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=120.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCC-C--
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVK-P-- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~-~-- 148 (270)
++.++++||++.|++.. +++|+||++++||+++|+|+||||||||+|+|+|+++-.-| ++|++ +++... .
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 45799999999997532 67999999999999999999999999999999999840001 46763 333211 0
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++... +. .+..++........+. ..........++++.++.. .+..+..+|+|++|
T Consensus 81 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred cchHhhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 0112224444322 21 3444443322211221 1111122344556655442 24456799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+.++.++..+++++|+|||+..+|....+.+.+++.. .|+++|+.+.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 211 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ 211 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999877777776652 3677776643
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=8e-23 Score=175.99 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=112.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-------P 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-------p 149 (270)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 67899999997522 126799999999999999999999999999999999984 677763 3331100 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~~r 216 (270)
....++..+.. +.. .+..++ .............+.++.+... ....+..+|+||+||
T Consensus 78 ~~i~~~~q~~~-l~~--~tv~en-------l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 147 (221)
T cd03244 78 SRISIIPQDPV-LFS--GTIRSN-------LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL 147 (221)
T ss_pred hhEEEECCCCc-ccc--chHHHH-------hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence 11122333332 111 122211 1111111222233333333221 123566899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++++.++..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 199 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLD 199 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 9999999999999999999999999888887777763 266676654
No 220
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.8e-23 Score=179.94 Aligned_cols=177 Identities=13% Similarity=0.117 Sum_probs=117.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-C
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK-P 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~-~ 148 (270)
++++++||++.|++.. +++++||+|++|+++||+||||||||||+++|+|++. |+ .|++ +++... .
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 5689999999997532 6799999999999999999999999999999999985 55 4663 332211 0
Q ss_pred --------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCCCCCCccc
Q 024225 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (270)
Q Consensus 149 --------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~~~~S~g~ 213 (270)
.....++.++...+ . .+..++..+.....+.... .....+...++.+++. .+..+..+|+||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 11122344443221 1 2333333322222222111 1112233444444432 235567899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+||++++.++..+++++|+|||+..+|...++.+.+++.. .|.++|+.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~ 207 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999999999999999999877777666652 366666653
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.3e-23 Score=184.19 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=120.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--- 148 (270)
.++++++||++.|++.. +++|+||+|++|++++|+||||||||||+++|+|++... +|++|++ +++....
T Consensus 37 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred ceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 35789999999997532 679999999999999999999999999999999985211 1377773 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++.. ++. .++.++..+.....+... ......+.+.++.++.. .+..+..+|+||+|
T Consensus 113 ~~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPN-PFP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cchHHhhhcEEEECCCCC-CCc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 011222444432 111 244443333222222211 00112234455555432 24456799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+.++.++..++++||+|||+..+|...++.+.++++. .|+++|+.+.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 99999999999999999999999999877777777752 3777777654
No 222
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.2e-23 Score=179.38 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=117.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-C-
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK-P- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~-~- 148 (270)
+++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |+ +|++ +++... .
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 588999999997532 6799999999999999999999999999999999984 43 6773 333211 0
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhcc------CCCcCCCCCCcccC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~------~~~~~~~~~S~g~~ 214 (270)
.....++.++..... .++..++........+... ........+.++.+.. ..+..+..+|+||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 011223444433211 1344443332221122111 0011222333333322 12455678999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 208 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999999999999999999999888777777652 266667664
No 223
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.7e-23 Score=180.70 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=115.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK----- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~----- 147 (270)
++++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++.-. .|++|++ +++...
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 4799999999997632 679999999999999999999999999999999997310 0256763 333211
Q ss_pred CC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC------CCcCCCCCCcccCChh
Q 024225 148 PP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 148 ~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~rv 217 (270)
.+ ....++.++... +. .+..++........++. .........+++.+... .+..+..+|+||+||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ChHHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 00 011223333221 11 12322222211111111 01112223334443331 2345668999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
.++.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~ 211 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ 211 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999999999999999988877777775 2367777764
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=7.8e-23 Score=175.94 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=113.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++|+++.|++.. ..+++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 67899999996521 226799999999999999999999999999999999985 777773 333211 00
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--C-----------cCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~-----------~~~~~~S~g~~~r 216 (270)
....++.++... +. .+..++. .+... ......+.+.++.+.+.. + .....+|+||+||
T Consensus 78 ~~i~~~~q~~~~-~~--~tv~e~l-----~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr 148 (220)
T cd03245 78 RNIGYVPQDVTL-FY--GTLRDNI-----TLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA 148 (220)
T ss_pred hhEEEeCCCCcc-cc--chHHHHh-----hcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence 112223333221 11 1221111 11111 112223334444433321 1 1235899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 201 (220)
T cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201 (220)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 9999999999999999999999999888777776652 3677777653
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.8e-23 Score=182.11 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=119.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~~---- 148 (270)
++++++|+++.|++.. +++|+||+|++|+++||+|+||||||||+++|+|++. ..+|++|++ +++....
T Consensus 23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 4699999999997533 6799999999999999999999999999999999983 111477773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhcc------CCCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l~~------~~~~~~~~~S~g~~~r 216 (270)
.....++.++... +. .+..++........+...... ...+.+.++.+.. ..+..+..+|+|++||
T Consensus 99 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 1112224444322 11 233333332211112111000 1122333433321 1234567899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 9999999999999999999999999888888777752 3777777653
No 226
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=5.2e-23 Score=195.13 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=116.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||++.|++... ..+|+++||++++|+++||+||||||||||+++|+|++. |++|+ +
T Consensus 20 ~mL~lknL~~~~~~~~~-~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGe--------------I 81 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEY-HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGT--------------V 81 (549)
T ss_pred ceeEEEEEEEecCCCcc-ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceE--------------E
Confidence 35888999988876321 236799999999999999999999999999999999983 45554 3
Q ss_pred ecCCCCc-------cccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 156 PMDGFHL-------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 156 ~~dg~~~-------~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
.++|... ....++..++........+............+++.+.+.. +..+..||+||+||+++++++..+
T Consensus 82 ~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 82 DIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred EECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 3333210 1111333333322111122211111122345566666543 456679999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
|++||+|||+..||+..++.+.+++. ..|+++|+.+
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 99999999999999987777777664 2367777764
No 227
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=180.69 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=123.7
Q ss_pred hhhccccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-C
Q 024225 66 KVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-F 142 (270)
Q Consensus 66 ~~~~~~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~ 142 (270)
..+...+...++++++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|++.- ..|++|++ +
T Consensus 14 ~~~~~~~~~~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 14 LDVLNLSDEQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred ccccccCCCCcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 33444444556899999999997532 67999999999999999999999999999999999730 01367763 3
Q ss_pred CCCCCC---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccC------CCcCC
Q 024225 143 DSQVKP---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYA 206 (270)
Q Consensus 143 ~~~~~~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~l~~l~~~------~~~~~ 206 (270)
++.... .....++.++.. ++. .+..++........+.... .......+.++.+++. .+..+
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 166 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA 166 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc
Confidence 332110 011222443322 111 1333333222111221100 0112234455555543 13456
Q ss_pred CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
..+|+|++||++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 78999999999999999999999999999999999877777776652 3666776643
No 228
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=7e-23 Score=206.60 Aligned_cols=161 Identities=18% Similarity=0.153 Sum_probs=125.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|+..+ .+.+|+|+||+|++|+.|+|+|||||||||++++|.+++ .|+.|. |.
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy----------------dP~~G~-V~ 411 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY----------------DPTSGE-VL 411 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCce-EE
Confidence 589999999999854 366789999999999999999999999999999999999 777888 88
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC----------------------------C----c
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----------------------------S----V 204 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~----------------------------~----~ 204 (270)
+||.++... +.+..+...|+-.|.......++.+|+.+|. + -
T Consensus 412 idG~di~~~------~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 412 IDGEDIRNL------NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred EcCccchhc------chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 888876542 2233455566543332222234555555431 1 1
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
..+++||||+||+++++++..+|+||++||++..||+...+.+.+.+| ..|-|+|..
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL 548 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL 548 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence 234799999999999999999999999999999999999999999888 346677665
No 229
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.88 E-value=4.1e-23 Score=179.95 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=119.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--Cc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~ 151 (270)
++++|+++.|++.. +++++||++.+|+++||+||||||||||+++|+|++. |++|++ +++... .+ ..
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 36789999997632 6799999999999999999999999999999999985 788873 333211 01 11
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++..+.... +.++..++..+.....+.........+.++++.+.+.. +..+..||+||+||++++.++..++++
T Consensus 74 i~~~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALF--KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhc--cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22244433221 11344343332222222111112233456666666543 445568999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
+|+|||+..+|...++.+.+++.+ .|+++|+.+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999888777777652 356666554
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.9e-23 Score=179.75 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=124.1
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCC------C-C
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDS------Q-V 146 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~------~-~ 146 (270)
.++++++++++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++ . .
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 35799999999998743 7799999999999999999999999999999999985 788753 222 1 1
Q ss_pred C--C----CCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC------CcCCCCCCccc
Q 024225 147 K--P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGV 213 (270)
Q Consensus 147 ~--~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~ 213 (270)
. . .....++..+.... +.++..++........+.. .........+.++.++... +..+..||+|+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 0 0 01122344443322 1234444443322222221 1111233456666666542 34566899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+||++++.++..+|+++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~ 213 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH
Confidence 9999999999999999999999999999888888877762 366666654
No 231
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-23 Score=197.99 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=124.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
++++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 5799999999997632 6799999999999999999999999999999999985 788884 3332110 0
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHH--hcCC-CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
....++.++.... ..+++.++...... ..+. ........+.++++.+++.. +..+..||+||+||++++.
T Consensus 76 ~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 76 ALAAGVAIIYQELHLV--PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred HHhCCEEEEEechhcc--CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 1122344443211 11344333322110 0111 11111234566777777643 4556799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++..+++++|+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~ 202 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999999999999888888777762 3778887653
No 232
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.88 E-value=1e-22 Score=178.32 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=111.0
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---- 149 (270)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. ..|++|++ +++... .+
T Consensus 2 i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 2 LSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred eEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-CCCCceEEEECCCccccCCHHHHh
Confidence 78899999998632 6799999999999999999999999999999999941 01666763 333211 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHh---cCCCCCcc----HHHHHHHHHhhccCC---CcCCC-CCCcccCChh
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTFN----PLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPV 217 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~---~g~~~~~~----~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~rv 217 (270)
....++..+...... ++........... .......+ .....+.++.+.+.. ..... .+|+||+||+
T Consensus 77 ~~~i~~~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 77 GEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred hcceEEEecCchhccc--hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 011112333221110 1100000000000 00000001 122344555555521 22232 6999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+++.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999999999999999999999988887776554 2267777654
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=4.4e-23 Score=198.85 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=121.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCccc-CCC----------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASS-FDS---------- 144 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll--~~~~~~~G~~-~~~---------- 144 (270)
++++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|++ . |++|++ +++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 46789999997532 679999999999999999999999999999999996 4 788874 321
Q ss_pred -------------CCC--------C---------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH
Q 024225 145 -------------QVK--------P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC 194 (270)
Q Consensus 145 -------------~~~--------~---------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (270)
... . .....+++++...+. ..+++.++..+.....+.........+.++
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 000 0 001122444311111 113444444332222333221122345667
Q ss_pred HHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 195 LKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 195 l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++.+++.. +..+..+|+||+||++++.++..+|++|++|||+..||+...+.+.+++. ..|+++|+.+.
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 77777653 45677999999999999999999999999999999999988887655443 23778887753
No 234
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.88 E-value=3e-23 Score=167.68 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=102.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|++ +|+.|. +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~----------------~~~~G~-i~~ 59 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL----------------EPDEGI-VTW 59 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC----------------CCCceE-EEE
Confidence 36789999997632 679999999999999999999999999999999998 678888 777
Q ss_pred CCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (270)
Q Consensus 158 dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~ 237 (270)
++.. ..++. +++|+|++||++++.++..+++++|+|||+.
T Consensus 60 ~~~~-----------------~i~~~-----------------------~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 60 GSTV-----------------KIGYF-----------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCeE-----------------EEEEE-----------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 7630 11111 1199999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhcc----ceEEeccccc
Q 024225 238 FLDGGVWKDVSSMFDE----KCYATSFKET 263 (270)
Q Consensus 238 ~lDe~~~~~l~~~~~~----~i~v~~~~~~ 263 (270)
.+|...++.+.+.+.. .++++|+.+.
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~ 129 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYF 129 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 9999888888777763 3667766543
No 235
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=178.71 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=119.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCCC---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVKP--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~~--- 148 (270)
.++++++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|++.-. ++++|++ +++....
T Consensus 4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 45799999999997533 779999999999999999999999999999999986300 0136773 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++... +. .++.++..+.....+... ........++++.+.+. .+.....+|+|++|
T Consensus 80 ~~~~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cchhhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 0112224444322 11 244444433222222211 01112334455555442 23456689999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
|+.++.++..+++++|+|||+..+|...++.+.++++. .|+++|+.+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~ 209 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHH
Confidence 99999999999999999999999999888877777762 266666654
No 236
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=1.1e-22 Score=177.13 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=107.4
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 36789999996421 1236799999999999999999999999999999999984 666663 3321100 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhccC----CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQ----GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~~~----~~~~~~~~S~g~~~r 216 (270)
....++..+... .. .+..++. .++... ......... ++.+..+ ....+..+|+|++||
T Consensus 77 ~~i~~~~q~~~~-~~--~tv~e~l-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 77 SQIGLVSQEPVL-FD--GTIAENI-----RYGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred hhEEEECCchhh-hh--hhHHHHh-----hccCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 011112222211 00 1111111 011110 111111111 1111111 123456899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~ 199 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLS 199 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 9999999999999999999999999887777777652 266666654
No 237
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.6e-22 Score=163.85 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=118.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
+++.++...-++.. +|+++||++.+||+++|.||||||||||+|+++-++ .|++|. +.+
T Consensus 4 le~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li----------------sp~~G~-l~f 62 (223)
T COG4619 4 LELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI----------------SPTSGT-LLF 62 (223)
T ss_pred hHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc----------------CCCCce-EEE
Confidence 44555544444422 669999999999999999999999999999999999 566666 555
Q ss_pred CCCCccccccCcc-cChHHHH-----------HhcCCC-----CCccHHHHHHHHHhhccCC---CcCCCCCCcccCChh
Q 024225 158 DGFHLYLSQLDAM-EDPKEAH-----------ARRGAP-----WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (270)
Q Consensus 158 dg~~~~~~~l~~~-~~~~~~~-----------~~~g~~-----~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv 217 (270)
.|..+........ ....+.. .+.-+| ..+|...+..+++.+..+. ...+-.+|||++||.
T Consensus 63 ~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri 142 (223)
T COG4619 63 EGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI 142 (223)
T ss_pred cCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH
Confidence 5554432111000 0000000 011111 1235667778888888875 345668999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY 264 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~ 264 (270)
++.+.+..-|+||++||++..|||...+.+.+++.. .+.|+||.|.+
T Consensus 143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa 197 (223)
T COG4619 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA 197 (223)
T ss_pred HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH
Confidence 999999999999999999999999999998888872 25788888764
No 238
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=173.22 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=121.6
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCCCCCCC--
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPP-- 149 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~~~~~p-- 149 (270)
+.++++++||+..|++.. +|+|+|++|++||-++|+||||||||||+++++|.. ||.+|.+ +....-+.
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~---~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhccc---CCCCCceeeeeeeccCCcc
Confidence 456799999999999855 679999999999999999999999999999999998 3655552 21110000
Q ss_pred ------CceEEee-cCCCCccccccCcccCh-HHHHHhcCCCC-Ccc---HHHHHHHHHhhccC--CCcCCCCCCcccCC
Q 024225 150 ------DVATVLP-MDGFHLYLSQLDAMEDP-KEAHARRGAPW-TFN---PLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (270)
Q Consensus 150 ------~~g~~i~-~dg~~~~~~~l~~~~~~-~~~~~~~g~~~-~~~---~~~~~~~l~~l~~~--~~~~~~~~S~g~~~ 215 (270)
..|.+-. +...+ ..+..+.+-. .-...-.|+.+ ..+ ......+++.+... .+.....+|-|+++
T Consensus 101 ~~elrk~IG~vS~~L~~~~--~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 101 IFELRKRIGLVSSELHERF--RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred hHHHHHHhCccCHHHHhhc--ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 0111000 00000 0001111100 00112233322 222 23334556666654 35666799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccch
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKETY 264 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~~ 264 (270)
|+-+++++..+|++||+|||+.++|-..++.+.+.++ ..+||+|..++.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence 9999999999999999999999999988877777666 249999988654
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=179.25 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=118.6
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----Cccc-CCCCCC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASS-FDSQVK- 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-----~G~~-~~~~~~- 147 (270)
++.++++|+++.|++.. +|+|+||++++|+++||+|+||||||||+++|+|++. |+ .|++ +++...
T Consensus 5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence 45799999999997532 6799999999999999999999999999999999984 43 4542 222110
Q ss_pred --C------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC------CCcCCCCCCcc
Q 024225 148 --P------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (270)
Q Consensus 148 --~------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~S~g 212 (270)
. .....+++.+.. ++. .+..++........+. +.........++++.+.+. .+..+..+|+|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred ccccchHHhhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 0 011222333322 111 2333333222112222 1111122345566666542 23455689999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
|+||++++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 99999999999999999999999999999887777776653 267777764
No 240
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8.1e-23 Score=177.48 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=114.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~ 151 (270)
++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. |+.|++ +++.... ...
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 35789999997632 6799999999999999999999999999999999995 777873 3332110 111
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++..+..... .++..++........+............+++.+++.. +..+..+|+|++||++++.++..++++
T Consensus 74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 222444433211 1333333322222222111111233456666666653 445678999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+|+|||+..+|...++.+.+++.
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~ 174 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELK 174 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999988888876664
No 241
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.5e-22 Score=196.65 Aligned_cols=174 Identities=16% Similarity=0.078 Sum_probs=124.7
Q ss_pred ceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceE
Q 024225 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (270)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~ 153 (270)
++++++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|++. |++|++ ++.. ...|
T Consensus 5 ~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~- 73 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG- 73 (556)
T ss_pred EEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-
Confidence 4799999999997 422 6799999999999999999999999999999999985 888885 3321 1223
Q ss_pred EeecCCCCccccccCcccChHHHHHh--------------cCCCCC---------------------cc-HHHHHHHHHh
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------FN-PLLLLNCLKN 197 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~--------------~g~~~~---------------------~~-~~~~~~~l~~ 197 (270)
+++++.... +.+++.++..+.... .+.... ++ ...+.++++.
T Consensus 74 ~v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 74 YLPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 355554321 124555544321110 011100 00 1234455666
Q ss_pred hccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 198 l~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
+++. .+..+..||+||+||+.++.++..++++||+|||+..||+...+.+.+++.. .|+++|+.+
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~ 221 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRY 221 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6553 2456679999999999999999999999999999999999888888887774 477888764
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=3.1e-22 Score=170.81 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=114.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~--- 148 (270)
..++++++++.|+... ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 4588999999997521 127799999999999999999999999999999999984 677763 332110 0
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCC
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
.....++.++.. +.. .+..++ ..+...+....+.+.++ ...++..+|+|++||+++++++..++
T Consensus 80 ~~~~i~~v~q~~~-~~~--~tv~~~-------l~~~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 80 LRSSLTIIPQDPT-LFS--GTIRSN-------LDPFDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HHhhEEEEecCCc-ccC--ccHHHH-------hcccCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 011122344332 111 122221 11111122222233332 24456799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~ 186 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRT 186 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 99999999999999888777777763 2677777654
No 243
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.88 E-value=1.5e-22 Score=177.71 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=117.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
+++++++|++.|++.. +|+++||++++||++||+|+||||||||+++|+|+.. +.|++|++ +++... .+
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA-YKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc-CcCCCceEEECCEEcccCChhh
Confidence 4689999999997532 7799999999999999999999999999999999731 12778873 333211 01
Q ss_pred --Cc-eEEeecCCCCccccccCcccChHHHHHhc----CCCCCc---cHHHHHHHHHhhccCC---CcCCC-CCCcccCC
Q 024225 150 --DV-ATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQG---SVYAP-SFDHGVGD 215 (270)
Q Consensus 150 --~~-g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~---~~~~~~~~l~~l~~~~---~~~~~-~~S~g~~~ 215 (270)
.. ..++.++.... ..++..++........ +..... ....+.+.++.+++.. +..+. .+|+|++|
T Consensus 81 ~~~~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 81 RAHLGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hheeeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 01 11133332211 1112222111111000 000000 0123455667666642 34444 49999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
|+.++.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 9999999999999999999999999988877777665 23777777653
No 244
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=7e-23 Score=182.15 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=118.0
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------Cccc-CCCCCCC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASS-FDSQVKP 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--------~G~~-~~~~~~~ 148 (270)
++++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++. |+ +|++ +++....
T Consensus 2 l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 2 LTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred eEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEcc
Confidence 78899999997633 6799999999999999999999999999999999985 55 6763 3332110
Q ss_pred ---C----CceEEeecCCCCccccccCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCC
Q 024225 149 ---P----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (270)
Q Consensus 149 ---p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~----g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~ 215 (270)
+ ....+++++....+. ++..++........ +.....+......+++.+++.. +..+..+|+|++|
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 0 011224444322111 33333222110000 1000112233456666666543 4556799999999
Q ss_pred hhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEecccc
Q 024225 216 PVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~ 262 (270)
|+.++.++. .+++++|+|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 999999998 48999999999999999888877776651 267777764
No 245
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=177.29 Aligned_cols=180 Identities=16% Similarity=0.096 Sum_probs=120.0
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCccc-CCCCCCC---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASS-FDSQVKP--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~---~~G~~-~~~~~~~--- 148 (270)
++++++||++.|+... +++++||++.+|+++||+||||||||||+++|+|++.. .| ++|++ +++....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 3589999999997522 67999999999999999999999999999999998620 12 47773 3332110
Q ss_pred ------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCc-cHHHHHHHHHhhccC------CCcCCCCCCcccCC
Q 024225 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~ 215 (270)
.....++.++... +. .+..++........+..... ......+.++.+... .+..+..+|+||+|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccHHHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 0112224444322 11 24444443322222321110 112234445555432 23456789999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
|++++.++..+++++|+|||+..+|....+.+.+++. ..|+++|+.+.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 9999999999999999999999999988777777665 23777777653
No 246
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=177.11 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=118.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~--~~~G~~-~~~~~~~---- 148 (270)
.+++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++.... +++|++ +++....
T Consensus 2 ~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 2 YRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred cEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 3588999999997522 6799999999999999999999999999999999863111 367773 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....++.++... +. .+..++........+... ......+.+.++.+.+. .+..+..+|+|++||
T Consensus 78 ~~~~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence 0112224444321 11 133333322111112110 01112234445554432 234567899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+.++.++..+++++++|||+..+|...++.+.+++.. .|+++|+.+
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 206 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 9999999999999999999999999888888777762 367777664
No 247
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=2.1e-22 Score=174.17 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=118.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CCc
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PDV 151 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~~ 151 (270)
++.++||++.|++......+++|+||++++||+++|+||||||||||+++|+|++....|++|++ +++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46788999999763111337799999999999999999999999999999999982111467763 3332111 111
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCC---CccHHHHHH-HHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~---~~~~~~~~~-~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
..++.++.... +.++..++..+.....+... ......... .++.+... .+..+..+|+|++||++++.++..
T Consensus 83 i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 22244433221 12344444433221111110 001112223 55555544 234567999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK 261 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~ 261 (270)
+++++|+|||+..+|...++.+.+++.+ .|+++|+.
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 9999999999999999888777777752 25666664
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-22 Score=174.47 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=114.9
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----------C
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----------P 149 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----------p 149 (270)
+|+|.|++.. + |+||++++ ++++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence 8999998732 3 99999999 9999999999999999999999985 888883 3332110 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....++.++... + ..++..++........ ..........++++.+++.. +..+..+|+||+||+.++.++..++
T Consensus 75 ~~i~~~~q~~~~-~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYAL-F-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCcc-C-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 112224444321 1 1133333332211111 11112234566777776653 4566799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
+++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 99999999999999887777776641 2677776643
No 249
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.4e-22 Score=175.33 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=107.6
Q ss_pred ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccc------
Q 024225 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ------ 166 (270)
Q Consensus 93 ~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~------ 166 (270)
-+.++.|+||+|++|+++|++|+|||||||++|+|.|++ .|+.|. +...|++.++.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll----------------~p~~G~-v~V~G~~Pf~~~~~~~~~ 98 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL----------------LPTSGK-VRVNGKDPFRRREEYLRS 98 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc----------------ccCCCe-EEecCcCcchhHHHHHHH
Confidence 366889999999999999999999999999999999999 566666 666666544311
Q ss_pred --------------cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225 167 --------------LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (270)
Q Consensus 167 --------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~il 230 (270)
++..+.....+..+.++.+...++...+.+-+.++. ......+|-||+.|+.++.++..++++|
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL 178 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence 112222222333444444433444445555555653 4455699999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHhhc
Q 024225 231 IVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 231 Ild~~~~~lDe~~~~~l~~~~~ 252 (270)
++|||+++||-..+..++++++
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flk 200 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLK 200 (325)
T ss_pred EecCCccCcchhHHHHHHHHHH
Confidence 9999999999999999999888
No 250
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.3e-22 Score=176.49 Aligned_cols=175 Identities=13% Similarity=0.117 Sum_probs=119.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDV 151 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~ 151 (270)
++++|+++.|++ . +++++||++++||+++|+||||||||||+++|+|++. |++|++ +++.... ...
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 357899999974 2 5799999999999999999999999999999999985 888883 3332110 112
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
..++..+.... ..++..++........+...........++++.+++.. +..+..+|+|++||++++.++..++++
T Consensus 73 i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 23345443322 12344444433222222211111223456677766653 445679999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhc--------cceEEecccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
+++|||+..+|....+.+.+++. ..|.++|+.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999977766666554 2266666654
No 251
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=8.7e-23 Score=195.91 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=121.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCccc-CCCCCCC-----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASS-FDSQVKP----- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~~-~~~~~~~----- 148 (270)
+++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|++. | ++|++ +++....
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 378899999997532 6799999999999999999999999999999999984 4 57774 3332110
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhc--C--CCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~ 218 (270)
.....++.++.... ..+++.++........ + ...........++++.+++.. +..+..||+||+||++
T Consensus 74 ~~~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 74 DTERAGIVIIHQELTLV--PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHhCCEEEEeeccccC--CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 01122344443211 1234433332211100 0 010111234566777777653 2346799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++.++..+++++|+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~ 203 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 99999999999999999999999888888877652 3777877643
No 252
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-22 Score=180.28 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=117.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC-C
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK-P 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~-~ 148 (270)
++++++||++.|++.. +++|+||++++||+++|+||||||||||+++|+|++. | ++|++ +++... .
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4789999999998633 6799999999999999999999999999999999984 3 46663 333111 0
Q ss_pred -------CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG 214 (270)
Q Consensus 149 -------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~ 214 (270)
.....++.++.. ++. .+..++........+. ..........+.++.+++.. +..+..+|+||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred cchhHHHhhheEEeccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 011222333322 111 2333322221111111 10000112234455555432 234568999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
||++++.++..+++++|+|||+..+|....+.+.+++.. .|+++|+.+.
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 224 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ 224 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999877777776652 3777777653
No 253
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-22 Score=194.75 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=123.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|+... ...+++|+||++++|+++||+||||||||||+|+|+|+++ .|++|++ +++....
T Consensus 258 ~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP--GRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC--CCCCcEEEECCEECCCCCHHH
Confidence 4699999999995210 1226799999999999999999999999999999999983 1278874 3332110
Q ss_pred ---CCceEEeecCCC-CccccccCcccChHHHHH-hc-CC---CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-GA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~-~~-g~---~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r 216 (270)
...+ ++.++.. ......+++.++...... .+ +. ........+.++++.+.+. .+..+..+|+||+||
T Consensus 335 ~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 1123 2444421 001112344443322110 11 10 0111123456778887764 245677999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+.++.++..++++||+|||+..+|+..++.+.+++. ..|+++|+.+.
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~ 467 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE 467 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 999999999999999999999999988888777765 23788888653
No 254
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=1.2e-22 Score=186.92 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=118.4
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---------C--C
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---------P--P 149 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---------~--p 149 (270)
||+|.|++. .+ ++||++++|++++|+||||||||||+++|+|+++ |++|++ +++... . .
T Consensus 4 ~l~~~~~~~-----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDF-----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCE-----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 788999752 23 8999999999999999999999999999999986 888883 333211 0 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....++.++.. ++ +.+++.++..+..... ........+.++++.+++.. +..+..+|+||+||++++.++..++
T Consensus 75 ~~i~~v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 11223444432 21 2245555443322111 11111234567777777653 5567799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
+++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~ 194 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE 194 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999999877766666542 3788888754
No 255
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=1.1e-22 Score=196.61 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=127.1
Q ss_pred ceEEeccchhhhhhhh-------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC
Q 024225 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~ 147 (270)
++++++||++.|+... ....+|+++||++++|+++||+||||||||||+|+|+|++ +++|++ +++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 4699999999996210 0123679999999999999999999999999999999997 678884 444211
Q ss_pred ---C-------CCceEEeecCCCCccccccCcccChHHHHHhcC--CCCCccHHHHHHHHHhhccC---CCcCCCCCCcc
Q 024225 148 ---P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (270)
Q Consensus 148 ---~-------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g--~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g 212 (270)
. .....+++++........+++.++........+ ...........++++.+++. .+..+..||+|
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 0 011233566542111122455554433222111 11111223456777777764 24567799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----c----ceEEeccccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KCYATSFKET 263 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~----~i~v~~~~~~ 263 (270)
|+||+.++.++..++++||+|||+..+|...++.+.+++. . .|+++|+.+.
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 9999999999999999999999999999987777777765 2 3788887643
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-22 Score=175.90 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=107.2
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C-----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P----- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p----- 149 (270)
++++|+++.|++.. .+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 1 l~~~~l~~~~~~~~---~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDPGR---PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence 35789999996311 26799999999999999999999999999999999984 666663 3221100 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHH---------HHHhhccC----CCcCCCCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~~~----~~~~~~~~S~g~~~r 216 (270)
....++..+... +. .+..++. .++... ........ .++.+..+ ....+..+|+|++||
T Consensus 75 ~~i~~~~q~~~~-~~--~tv~~nl-----~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 75 RAIGVVPQDTVL-FN--DTIGYNI-----RYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred hhEEEECCCChh-hc--chHHHHH-----hhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 001113333211 11 1221111 111111 11111111 11222111 122356899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++++.++..+|+++|+|||+..+|+..++.+.+++.. .|+++|+.+
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 197 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS 197 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 9999999999999999999999999888877777752 356666654
No 257
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=1.9e-22 Score=174.93 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=108.4
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCccc-CCCCCCCC-----CceEEeecCCCCcccc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASS-FDSQVKPP-----DVATVLPMDGFHLYLS 165 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~----~~G~~-~~~~~~~p-----~~g~~i~~dg~~~~~~ 165 (270)
+++|+||++++|++++|+||||||||||+++|+|+++ | ++|++ +++..... ....++.++.......
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4689999999999999999999999999999999985 6 67774 33321100 1122244443211111
Q ss_pred ccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-----CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCC
Q 024225 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (270)
Q Consensus 166 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lD 240 (270)
.++..++........+.........+.++++.+.+. .+..+..+|+|++||++++.++..+++++|+|||+..+|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 123322222222222322111223456677777664 244567899999999999999999999999999999999
Q ss_pred hhhHHHHHHhhc--------cceEEecccc
Q 024225 241 GGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 241 e~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
...++.+.+++. ..|+++|+.+
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 977666665554 1367777664
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=195.25 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=124.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|++ +++. ...+ +
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~-~ 386 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIG-Y 386 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEE-E
Confidence 4699999999997633 6799999999999999999999999999999999985 777774 3321 1122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
+.++........++..++.. .+. ..........++++.+++. .+..+..+|+||+||++++.++..+++++|
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~----~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMS----QWR-QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EcccccccCCCCCcHHHHHH----Hhc-cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 44432111111123322211 111 1112234566778887763 256778999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET 263 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~ 263 (270)
+|||+..||....+.+.+++.. .|+++||.+.
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999999999888888887774 4788887753
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=1.7e-22 Score=172.03 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=108.0
Q ss_pred EEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (270)
Q Consensus 78 l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i 155 (270)
++++||++.|++..+ ...+++++||++++|++++|+||||||||||+++|+|+++ |++|++ +++ ..+ ++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~-~~ 71 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIA-YV 71 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEE-EE
Confidence 467899999976310 0126799999999999999999999999999999999984 666653 222 112 23
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------C----CCcCCCCCCcccCChhhhhhh
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~~S~g~~~rv~~~~~ 222 (270)
..+... .. .+..++. -+...+......+.++.+.. + .......+|+|++||++++.+
T Consensus 72 ~q~~~l-~~--~t~~enl-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara 141 (204)
T cd03250 72 SQEPWI-QN--GTIRENI-------LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA 141 (204)
T ss_pred ecCchh-cc--CcHHHHh-------ccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 333321 11 2222211 11111111222222222111 1 123456899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHH-hhc-------cceEEecccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD-------EKCYATSFKE 262 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~-~~~-------~~i~v~~~~~ 262 (270)
+..+++++|+|||+..+|...++.+.+ ++. ..|+++|+.+
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 999999999999999999987776655 332 2267777654
No 260
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=193.39 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=122.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
++++++|+++.|+. +++|+||++++|+++||+||||||||||+|+|+|+++ |++|++ +++.... +
T Consensus 264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 46999999997632 6799999999999999999999999999999999985 888884 4442111 1
Q ss_pred ---CceEEeecCC--CCccccccCcccChHHHHHh--------cCC-CCCccHHHHHHHHHhhccC---CCcCCCCCCcc
Q 024225 150 ---DVATVLPMDG--FHLYLSQLDAMEDPKEAHAR--------RGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (270)
Q Consensus 150 ---~~g~~i~~dg--~~~~~~~l~~~~~~~~~~~~--------~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g 212 (270)
....+++++. ..+. +.+++.++....... ++. ..........++++.+++. .+..+..||+|
T Consensus 335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 1122244442 1111 123443332211100 011 0001112345777777764 34567799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
|+||+.++.++..++++||+|||+..||+..++.+.++++. .|+++||.+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 99999999999999999999999999999888888888752 378888764
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=1.6e-22 Score=194.98 Aligned_cols=182 Identities=17% Similarity=0.194 Sum_probs=126.2
Q ss_pred ceEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC-CC-C---C-
Q 024225 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ-V---K- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~-~~-~---~- 147 (270)
++++++||++.|++. .....+++|+||++++|+++||+||||||||||+|+|+|++. |++|++ ++ +. . .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCccccccc
Confidence 479999999999531 011236799999999999999999999999999999999985 888884 32 21 0 0
Q ss_pred -C-------CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-------CcCCCCCCcc
Q 024225 148 -P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFDHG 212 (270)
Q Consensus 148 -~-------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~S~g 212 (270)
. .....++.++.. +. ..+++.++...... .+...........++++.+.+.. +.++..+|+|
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~-l~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYD-LY-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred cchhhHHHHhhhEEEEccCcc-cC-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHH
Confidence 0 011223555432 11 22444444432211 12111111234556777777743 4567799999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
|+||++++.++..++++||+|||+..+|....+.+.+++. ..|+++|+.+.
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 490 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 9999999999999999999999999999988888877773 23788888754
No 262
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.6e-22 Score=181.29 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=119.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCccc-CCCCCC-C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASS-FDSQVK-P--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~--~~~~G~~-~~~~~~-~--- 148 (270)
++++++||++.|++.. +|+++||++++|++++|+|+||||||||+++|+|+++.. +|++|++ +++... .
T Consensus 44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4689999999997633 779999999999999999999999999999999997311 2467773 333110 0
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcC------------CCC-CccHHHHHHHHHhhccC------CCc
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRNQ------GSV 204 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g------------~~~-~~~~~~~~~~l~~l~~~------~~~ 204 (270)
.....++.++.. ++. .++.++........+ ... ......+.++++.+.+. .+.
T Consensus 120 ~~~~~~~~i~~v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 NLVELRKRVGMVFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred cHHHHhhceEEEccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 011222333322 111 233333322111111 000 00112344555555442 134
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
.+..+|+|++||+.++.++..++++||+|||+..||...++.+.+++.. .|+++|+.+.
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 261 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ 261 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 5678999999999999999999999999999999999888877777762 3677777644
No 263
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=2.9e-22 Score=197.38 Aligned_cols=174 Identities=13% Similarity=0.033 Sum_probs=117.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
++++++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|++. |++|++ +++.. ..+.
T Consensus 2 ~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~- 70 (635)
T PRK11147 2 SLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR- 70 (635)
T ss_pred cEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE-
Confidence 4799999999998633 6799999999999999999999999999999999984 666653 22210 0011
Q ss_pred eecCCCCccccccCcccCh------------------------------HHHH---HhcCC-CCCccHHHHHHHHHhhcc
Q 024225 155 LPMDGFHLYLSQLDAMEDP------------------------------KEAH---ARRGA-PWTFNPLLLLNCLKNLRN 200 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~------------------------------~~~~---~~~g~-~~~~~~~~~~~~l~~l~~ 200 (270)
+.++.. ........+.. .... ..+.. ........+..+++.+++
T Consensus 71 l~q~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 71 LQQDPP--RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred eccCCC--CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 111100 00000000000 0000 00000 000112345667777777
Q ss_pred CCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 201 ~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
..+..+..||+|+++|++++.++..+|++||+|||+..||....+.+.+++.. .|+|+||.+
T Consensus 149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~ 214 (635)
T PRK11147 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRS 214 (635)
T ss_pred CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 55667789999999999999999999999999999999999988888888863 377777753
No 264
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=1.8e-22 Score=175.19 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=110.0
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CCCceEEeecCCCCccccccCcccC
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDVATVLPMDGFHLYLSQLDAMED 172 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p~~g~~i~~dg~~~~~~~l~~~~~ 172 (270)
++++||++++|++++|+||||||||||+++|+|++. |++|++ +++... .+..+ ++.++..... .+++.++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~-~v~q~~~l~~--~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRM-VVFQNYSLLP--WLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhhe-EEecCcccCC--CCCHHHH
Confidence 478999999999999999999999999999999985 788884 333211 11223 3454432211 1344444
Q ss_pred hHHHHHh--cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH
Q 024225 173 PKEAHAR--RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (270)
Q Consensus 173 ~~~~~~~--~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~ 248 (270)
....... .+.........+.++++.+++.. +..+..+|+|++||+.++.++..+++++|+|||+..+|...++.+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 4332111 11111111223456677666643 4556789999999999999999999999999999999998888777
Q ss_pred Hhhcc--------ceEEecccc
Q 024225 249 SMFDE--------KCYATSFKE 262 (270)
Q Consensus 249 ~~~~~--------~i~v~~~~~ 262 (270)
+++.. .|+++|+.+
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH
Confidence 76652 267777764
No 265
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.4e-22 Score=176.91 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=119.4
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK 147 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~ 147 (270)
....++++|+++.|++.. +++|+||++++||+++|+|+||||||||+++|+|++. | ++|++ +++...
T Consensus 13 ~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccc
Confidence 345699999999997532 7799999999999999999999999999999999974 3 56763 333111
Q ss_pred C-----------CCceEEeecCCCCccccccCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccC------CCcCCCCC
Q 024225 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSF 209 (270)
Q Consensus 148 ~-----------p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~l~~~------~~~~~~~~ 209 (270)
. .....++..+...+ . .+..++........+... ........+.++.+... .+..+..+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 162 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162 (265)
T ss_pred cccccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence 0 01112244333211 1 133333322221122211 11112334445544432 13455689
Q ss_pred CcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 210 S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+|++||+.++.++..+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~ 222 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ 222 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 99999999999999999999999999999999888777777762 3677777644
No 266
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=194.31 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=121.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEee
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLP 156 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~ 156 (270)
++++||++.|++.. +|+++||++++|+++||+||||||||||+|+|+|++. |++|++ +++. ...+ ++.
T Consensus 2 l~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~-~~~ 70 (530)
T PRK15064 2 LSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLG-KLR 70 (530)
T ss_pred EEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-EEe
Confidence 78999999997633 6799999999999999999999999999999999985 777774 3331 1223 244
Q ss_pred cCCCCccccccCcccChHHHHH-----------hcCCCC---------------------CccHHHHHHHHHhhccCC--
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG-- 202 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~~~~-- 202 (270)
++.... ..+++.++...... ..+.+. ......+.++++.+++..
T Consensus 71 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 71 QDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred ccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 443211 11333332221100 000000 001134456777777653
Q ss_pred -CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 203 -~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
+..+..||+||+||++++.++..+|++|++|||+..||+...+.+.+++.. .|+++|+.+
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 213 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRH 213 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 234679999999999999999999999999999999999999999888874 367777764
No 267
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=1.9e-22 Score=194.74 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=111.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---- 149 (270)
.++++||++.|++.. .+|+|+||++++|+.++|+||||||||||+++|+|++. |++|++ +++.... .
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 489999999997532 26799999999999999999999999999999999994 555552 2221000 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~ 215 (270)
....+++++.+-... +. +.+..+ ....+.+.+.+.++..+. |.+.. ...+||||+|
T Consensus 408 ~~i~~V~Q~~~lF~~---TI-------~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 408 RRISVFAQDAHLFDT---TV-------RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hheEEEccCcccccc---cH-------HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 011224444432211 11 122222 112233444444443332 22222 2369999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSF 260 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~ 260 (270)
|+++++++..+++++|+||++..+|+..-+.+.+.+. ..|.|+|.
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9999999999999999999999999977777766664 23566654
No 268
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.4e-22 Score=197.89 Aligned_cols=171 Identities=17% Similarity=0.161 Sum_probs=122.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|++. |++|++.-+. .-..| ++
T Consensus 311 ~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~ig-y~ 380 (638)
T PRK10636 311 PLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAK--GIKLG-YF 380 (638)
T ss_pred ceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECC--CEEEE-Ee
Confidence 4799999999997633 6799999999999999999999999999999999985 7777743221 01122 23
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
.++.... ++.......... ..........+.++++.+.+.. +..+..+|+|+++|++++.++..++++||+
T Consensus 381 ~Q~~~~~----l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 381 AQHQLEF----LRADESPLQHLA--RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred cCcchhh----CCccchHHHHHH--HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3321110 111111111111 1111122345567788887742 456779999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
|||+..||....+.+.+++.. .|+|+||.+
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~ 488 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRH 488 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 999999999988888888863 478888764
No 269
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=2.4e-22 Score=195.18 Aligned_cols=174 Identities=15% Similarity=0.096 Sum_probs=125.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|++. |++|++..++ ....| ++
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~--~~~i~-~v 392 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE--TVKLA-YV 392 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC--ceEEE-EE
Confidence 4699999999997633 7799999999999999999999999999999999985 7888753232 11223 35
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
.++...+ ...+++.++........+.. ........+++.+++. .+..+..||+||+||+.++.++..+++++|+
T Consensus 393 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 393 DQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred eCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5543111 12244444333221111111 1122344677777764 2456779999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
|||+..+|....+.+.+++.. .|+++||.+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~ 503 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFPGCAVVISHDRW 503 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 999999999888888887764 377777764
No 270
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=197.11 Aligned_cols=172 Identities=16% Similarity=0.065 Sum_probs=118.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i 155 (270)
+|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|++. |++|++ +++.. ..+. +
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V 69 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence 378999999998743 6799999999999999999999999999999999884 677764 23210 1111 2
Q ss_pred ecCCCCccccccCcccChH-----------------------HH---HHhcC-CCCCccHHHHHHHHHhhccC---CCcC
Q 024225 156 PMDGFHLYLSQLDAMEDPK-----------------------EA---HARRG-APWTFNPLLLLNCLKNLRNQ---GSVY 205 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~-----------------------~~---~~~~g-~~~~~~~~~~~~~l~~l~~~---~~~~ 205 (270)
.++..... .+...... .. ...+. .........+..+++.+++. .+..
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 22211100 01000000 00 00000 00011123456778888774 2456
Q ss_pred CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
+..||+|+++|++++.++..+|++||+|||+..||......+.+++.. .|+|+||.+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~ 207 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRD 207 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 779999999999999999999999999999999999888888888763 477887763
No 271
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.5e-22 Score=166.51 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=108.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
+++++||+|.|++.. +++++|++|++|.+.+|+||||||||||+.++++++ +.+.|. +.
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~----------------~~d~G~-i~ 59 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL----------------KKDSGE-IT 59 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhc----------------cccCce-EE
Confidence 468899999999854 779999999999999999999999999999999999 566777 77
Q ss_pred cCCCCccccc--------------------cCcccChHHHH--HhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcc
Q 024225 157 MDGFHLYLSQ--------------------LDAMEDPKEAH--ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG 212 (270)
Q Consensus 157 ~dg~~~~~~~--------------------l~~~~~~~~~~--~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g 212 (270)
+||..+.... +++.+...+.+ --.|-+...|..-+.+.++.+.+. .+.+..++|||
T Consensus 60 i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGG 139 (252)
T COG4604 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGG 139 (252)
T ss_pred EeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccc
Confidence 7777654310 11111100000 001112223444556666666654 46788899999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~ 242 (270)
|+||...+..+..+.+.+++|||..-||-.
T Consensus 140 QrQRAfIAMVlaQdTdyvlLDEPLNNLDmk 169 (252)
T COG4604 140 QRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169 (252)
T ss_pred hhhhhhhheeeeccCcEEEecCcccccchH
Confidence 999999999999999999999999999974
No 272
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=4.9e-22 Score=163.16 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=125.8
Q ss_pred cceEEeccchhhhhhhh-----cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC
Q 024225 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK 147 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~-----~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~ 147 (270)
+++++++|++|.|.... ..+.+++.|||++++|+.+||+|.||||||||+|+|+|.+. |++|++ ++++ ..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 46789999999986432 34778899999999999999999999999999999999995 888883 3332 22
Q ss_pred ------CCCceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChh
Q 024225 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv 217 (270)
+.....+|++|.....++.+..-+..+... ..-....+.....+.+.+..+++. .+.++..++-|++||+
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 223445577776555444443322211111 111121112233455666777765 3577889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
++++++.++|++||.|+....||...+-++..++-
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 99999999999999999999999987777777655
No 273
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.1e-23 Score=196.11 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=119.5
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--------CC
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PD 150 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------p~ 150 (270)
++||++.|++.. +++|+||++++|+++||+||||||||||+++|+|++. |++|++ +++.... ..
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 468899997532 6799999999999999999999999999999999985 788884 4442111 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHH-hcCC--CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~--~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
...++.++..... .+++.++...... ..+. ..........++++.+++.. +..+..+|+||+||++++.++..
T Consensus 74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 1223555432211 1344333322110 0111 00011223456677666643 44567999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+++++|+|||+..+|...++.+.+++.. .|+++|+.+.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~ 196 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 9999999999999999888888777642 3777877643
No 274
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=2e-22 Score=193.42 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=120.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCccc-CCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS-FDSQVKP----- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~-~~~~~~~----- 148 (270)
++++++|+++.|+.... ..+++++||++++||++||+||||||||||+|+|+|++. | ++|++ +++....
T Consensus 256 ~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVINPH-RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCccccccccc-ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCHH
Confidence 36999999999942101 126799999999999999999999999999999999983 4 57773 3332110
Q ss_pred ----CCceEEeecCCC--CccccccCcccChHHHH-Hhc-C---CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccC
Q 024225 149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAH-ARR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (270)
Q Consensus 149 ----p~~g~~i~~dg~--~~~~~~l~~~~~~~~~~-~~~-g---~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~ 214 (270)
...+. +.++.. .+ .+.+++.++..... ... . .........+.++++.+.+. .+..+..+|+||+
T Consensus 332 ~~~~~~i~~-v~q~~~~~~l-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 332 QAIRAGIAM-VPEDRKRHGI-VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred HHHhCCCEE-cCcchhhCCc-CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence 01222 443320 01 11123333222111 001 0 00011123456778877774 2456679999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
||++++.++..+++++|+|||+..||...++.+.++++. .|+++||.+
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 999999999999999999999999999888877766652 377788764
No 275
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=2.9e-22 Score=194.44 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=125.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|++. |++|++..+. ....+ ++
T Consensus 321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~--~~~i~-~v 390 (552)
T TIGR03719 321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE--TVKLA-YV 390 (552)
T ss_pred eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC--ceEEE-EE
Confidence 4799999999997633 7799999999999999999999999999999999985 7888753222 11223 35
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
.++...+ ...+++.++........+.. ........+++.+++.. +..+..||+||+||++++.++..+++++|+
T Consensus 391 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 391 DQSRDAL-DPNKTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred eCCcccc-CCCCcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 5543111 12244444332211111111 11223446777777642 456779999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
|||+..||....+.+.+++.. .|+++||.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~ 501 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFAGCAVVISHDRW 501 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 999999999988888888874 377777764
No 276
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.7e-22 Score=186.46 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=112.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|+... + +|+++||+|++||.|||+|+|||||||++|+|.+++ .++| . |.
T Consensus 351 ~I~F~dV~f~y~~k~-~--iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG-------------~-I~ 409 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR-K--VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSG-------------S-IL 409 (591)
T ss_pred cEEEEeeEEEeCCCC-c--eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCC-------------c-EE
Confidence 389999999998632 2 569999999999999999999999999999999998 3444 4 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC-------------------C-------------C
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ-------------------G-------------S 203 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~-------------------~-------------~ 203 (270)
+||.++.... .+..++.+|+ ||+. .-.-.+++.|++.| + -
T Consensus 410 IdG~dik~~~------~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 410 IDGQDIKEVS------LESLRQSIGVVPQDS-VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred ECCeeHhhhC------hHHhhhheeEeCCcc-cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 5555443211 1123333444 2211 11112333333322 0 0
Q ss_pred cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
-....+||||+||+++++++..+++++++||++.-+|.+.-.++.+++. ..|+|-|+.+.
T Consensus 483 erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL 548 (591)
T ss_pred hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence 1234789999999999999999999999999999999987777777766 34888887754
No 277
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.1e-22 Score=174.97 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=118.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCccc-CCCCCC-C-----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASS-FDSQVK-P----- 148 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~--~~~~~~G~~-~~~~~~-~----- 148 (270)
-+++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. ...|++|++ +++... .
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46789999997532 6799999999999999999999999999999999973 011357773 333211 0
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccCC------CcCCCCCCcccCChh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDPV 217 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~~rv 217 (270)
.....++.++... .. .+..++..+.....+.... .......++++.+++.. +..+..+|+||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 0112234544322 11 1333333222111221111 11123455667766532 235668999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+++.++..+++++|+|||+..+|...++.+.+.+.. .|+++|+.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~ 209 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMK 209 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999999999999999999888877777752 367777764
No 278
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=159.32 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=122.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CC---CCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD---SQVK---- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~---~~~~---- 147 (270)
|++++.+++|.|+... ..++|||++.+||+.||+|+||||||||+++|++.+. |+.|++ +. ++..
T Consensus 5 PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 5 PLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred cceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHhh
Confidence 6799999999999855 7799999999999999999999999999999999984 666652 11 1100
Q ss_pred ----------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhccCC---CcCCCCCCccc
Q 024225 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (270)
Q Consensus 148 ----------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~l~~~~---~~~~~~~S~g~ 213 (270)
+-+-|. +.++..+=.+.+.++-.|..+.....|...--+ .......++.+.... +-.+..||+||
T Consensus 78 msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 78 MSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 011122 333222222222233333333332223211011 122344566666553 23567999999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+||+.++..+...|+++++|||+.++|-..+.++.+++. ..+.|+||..+
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V 214 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH
Confidence 999999999999999999999999999999988888877 33678887743
No 279
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=6.6e-22 Score=191.98 Aligned_cols=173 Identities=16% Similarity=0.049 Sum_probs=121.1
Q ss_pred eEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
+++++||++.|+ +.. +|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++. ...+ +
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~-~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVG-Y 72 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE-E
Confidence 689999999997 422 6799999999999999999999999999999999985 888885 3321 1223 3
Q ss_pred eecCCCCccccccCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHhh
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNL 198 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~l 198 (270)
+.++.... ..+++.++..+.... ++..... ....+.++++.+
T Consensus 73 v~Q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 73 LPQEPQLD--PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EeccCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 55554321 124544444321100 0111000 001223344444
Q ss_pred ccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 199 RNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 199 ~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
++. .+..+..||+||+||++++.++..++++||+|||+..||+...+.+.+++.. .|+++|+.+
T Consensus 151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~ 219 (552)
T TIGR03719 151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRY 219 (552)
T ss_pred CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 443 2455679999999999999999999999999999999999988888888763 377777763
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=4.1e-22 Score=190.78 Aligned_cols=182 Identities=15% Similarity=0.023 Sum_probs=119.4
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCccc-CCCCCC-C---
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS-FDSQVK-P--- 148 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~-~~~~~~-~--- 148 (270)
.++++++|+++.|++.. +|+++||++++|+++||+||||||||||+|+|+|++. + ++|++ +++... .
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 35799999999997632 6799999999999999999999999999999999762 3 47773 333211 0
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHh-cCCCC---CccHHHHHHHHHhhccCC---CcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~-~g~~~---~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~r 216 (270)
...+. +.++.........+..+........ .+... ........++++.+++.. +..+..||+||+||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 01122 3332110000001111100000000 01110 111234566777777653 44567999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccccch
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFKETY 264 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~~ 264 (270)
++++.++..+++++|+|||+..+|+..++.+.+++.. .|+++|+.+..
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 9999999999999999999999999888887776642 37888887543
No 281
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.4e-22 Score=174.95 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=119.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCccc-CCCCCC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASS-FDSQVK-- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-----~~G~~-~~~~~~-- 147 (270)
+++.++++++.|+... +++++||++++|+++||+|+||||||||+++|+|++. | ++|++ +++...
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 5688999999997633 7799999999999999999999999999999999984 3 56763 333211
Q ss_pred ---C----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC------CcCCCCCCcccC
Q 024225 148 ---P----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVG 214 (270)
Q Consensus 148 ---~----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~------~~~~~~~S~g~~ 214 (270)
. .....++.++... +. ++..++........+. .........+.++.+.+.. +..+..+|+|++
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNP-FS--MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCcc-cc--ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 0 0112224444332 11 3444433322221111 1111234455666665432 234568999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||+.++.++..+++++|+|||+..+|....+.+.+++.+ .|+++|+.+
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~ 209 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999999999999999999999877777777663 266777765
No 282
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=5.5e-22 Score=195.36 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=124.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
.+++++||++.|++.. +++++||+|.+|+++||+||||||||||+++|+|++. |++|++..+.. ...|. +
T Consensus 318 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~--~~i~y-~ 387 (635)
T PRK11147 318 IVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK--LEVAY-F 387 (635)
T ss_pred ceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC--cEEEE-E
Confidence 4799999999997633 6799999999999999999999999999999999985 78887533321 12222 4
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
.++... ..+.+++.++..... .+.........+.++++.+.+. ....+..||+|+++|++++.++..++++||+
T Consensus 388 ~q~~~~-l~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 388 DQHRAE-LDPEKTVMDNLAEGK--QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred eCcccc-cCCCCCHHHHHHhhc--ccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 433211 112234433322111 0110011123456677777663 2456679999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
|||+..||....+.+.+++.. .|+|+||.+
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~ 498 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ 498 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 999999999988888888874 488888864
No 283
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=3.7e-22 Score=212.89 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=130.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
.+++++||+|.|++. ...+++|+||+|++||++||+||||||||||+|+|+|++. |++|++ +++...
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 469999999999752 1237899999999999999999999999999999999996 888884 333211
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhcc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
....|. +.+++... ..+++.++.......+|++.........++++.+++. .+..+..||+|++||+.++.++..
T Consensus 2011 r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2011 HQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred hhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 112333 55543322 2366666665544445654322223445667777664 356678999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+|+++++|||+.++|+..++.+.+++.. .|+++|+.++
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999999999777766666542 2666666543
No 284
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=3.1e-22 Score=198.89 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=113.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|++. |++|++ +++...
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 489999999996432 226799999999999999999999999999999999994 566653 333110
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~ 214 (270)
+...+ ++++|.+.... +. +.+..+....+.+.+.+.++..+. |.+.. ...+|+||+
T Consensus 526 r~~i~-~v~Q~~~lf~g---TI-------~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 526 RRQLG-VVLQNGRLMSG---SI-------FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HhccE-EEccCCccCcc---cH-------HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 11122 24554442211 11 112211111333444444443332 22221 246999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
||+++++++..+++++|+|||+..+|+...+++.+.++ ..|.|+|..
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~ 645 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRL 645 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecCh
Confidence 99999999999999999999999999977776666555 447777765
No 285
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=4.1e-22 Score=198.69 Aligned_cols=169 Identities=19% Similarity=0.119 Sum_probs=113.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++..+ .+|+|+||+|++|+.+||+|+||||||||+|+|+|++. |++|++ +++...
T Consensus 477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 5899999999986322 26799999999999999999999999999999999994 555552 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc---------CCCc----CCCCCCccc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~ 213 (270)
+...+ ++.++.+... -+. +.+..+ ....+.+.+.+.++..+. |.+. ....+||||
T Consensus 552 r~~i~-~v~Q~~~lf~---gTi-------~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 552 ANSVA-MVDQDIFLFE---GTV-------RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred Hhhee-EEecCChhhh---ccH-------HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 01112 2444443221 111 122221 112333444444443322 2222 234699999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
+||+++++++..+++++|+|||+..+|+...+++.+.+. ..|.|+|..
T Consensus 621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl 672 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL 672 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999999999999999999999977777766665 447777765
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=4.8e-22 Score=176.91 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=112.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C------C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P------P 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~------p 149 (270)
++++||++.|++.. ..+|+|+||+|++||++||+|+||||||||+++|+|++ +++|++ +++... . .
T Consensus 3 i~~~nls~~~~~~~--~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGG--NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence 68899999995321 12679999999999999999999999999999999998 455663 333110 0 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCC-----------CCCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~-----------~~~S~g~~~r 216 (270)
....+++++... +. .+..+ .+........+.+.+.++.+++.. +..+ ..||+|++||
T Consensus 77 ~~i~~v~q~~~l-f~--~tv~~-------nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFI-FS--GTFRK-------NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCccc-ch--hhHHH-------HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 112223333321 11 12211 111111122334455555555432 1122 2399999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
+.+++++..+++++|+|||+..+|....+.+.+.+.. .|+++|+.+.
T Consensus 147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 199 (275)
T cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA 199 (275)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHH
Confidence 9999999999999999999999999877777776662 2777777643
No 287
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=5.7e-22 Score=211.47 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=133.0
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
..++++||+|.|++.. ..+++|+||++++||+++|+||||||||||+++|+|++. |++|++ +++...
T Consensus 927 ~~L~I~nLsK~y~~~~--k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~~ 1001 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDAV 1001 (2272)
T ss_pred ceEEEEeEEEEecCCC--ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHHH
Confidence 4799999999996311 227799999999999999999999999999999999996 888884 333211
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
+...|. +.++.... ..+++.++.....+..|.........+.++++.+++.. +..+..||+||+||+.+++++..
T Consensus 1002 r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1002 RQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred hhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 112233 55554322 23677666665544455433222344567788777753 45677999999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccch
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKETY 264 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~~ 264 (270)
+++++|+|||+.++|+..++.+.+++.. .|.++|+.+++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea 1123 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 9999999999999999777777766652 36777776543
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=6.4e-22 Score=196.82 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=111.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++..+ .+|+|+||+|++|+.++|+|+||||||||+|+|+|++ .|+.|. |.
T Consensus 463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~----------------~p~~G~-I~ 523 (694)
T TIGR03375 463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY----------------QPTEGS-VL 523 (694)
T ss_pred eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCCce-EE
Confidence 5899999999975322 2679999999999999999999999999999999999 444454 45
Q ss_pred cCCCCccccccCc--------ccCh----HHHHHhcCCC-CCccHHHHHHHHHhhc---------cCCCc----CCCCCC
Q 024225 157 MDGFHLYLSQLDA--------MEDP----KEAHARRGAP-WTFNPLLLLNCLKNLR---------NQGSV----YAPSFD 210 (270)
Q Consensus 157 ~dg~~~~~~~l~~--------~~~~----~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S 210 (270)
+||.++....... .+++ .-.+.++.+. ...+.+.+.+.++..+ .|.+. ....+|
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 5554332200000 0000 0011222221 1123333333333322 22221 224799
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
+||+||+++++++..+++++|+||++..+|+...+.+.+.+. ..|.|+|+.+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999999999999999999999999999999977777766654 3477777764
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-21 Score=188.21 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=116.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CC-
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PD- 150 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~- 150 (270)
++++++||++.|. . +++++||++++||++||+||||||||||+++|+|+++ |++|++ +++.... +.
T Consensus 249 ~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 4699999999852 1 6799999999999999999999999999999999985 667763 3331110 00
Q ss_pred ---c-eEEeecCCC--CccccccCcccCh--HHHHH---hcCC-CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCC
Q 024225 151 ---V-ATVLPMDGF--HLYLSQLDAMEDP--KEAHA---RRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (270)
Q Consensus 151 ---~-g~~i~~dg~--~~~~~~l~~~~~~--~~~~~---~~g~-~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~ 215 (270)
. ..++.++.. .++ ..++..++. +.... ..+. ..........++++.+.+. .+..+..||+||+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 0 111222211 000 011111110 00100 0111 1001122345666766663 25567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
|+.++.++..++++||+|||+..+|....+.+.++++ ..|+++||.+.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 9999999999999999999999999988888877774 22788887654
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=9.9e-22 Score=173.27 Aligned_cols=174 Identities=12% Similarity=0.040 Sum_probs=112.0
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---- 148 (270)
....++++|+++.|+... ..+++++||++++|+++||+|+||||||||+++|+|++. |++|++ +++....
T Consensus 16 ~~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 16 LGGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL 90 (257)
T ss_pred CCceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence 345799999999997521 236799999999999999999999999999999999984 677763 3331110
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhc--cC--CCcCCCCCCcc
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLR--NQ--GSVYAPSFDHG 212 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~--~~--~~~~~~~~S~g 212 (270)
.....++.++.. ++. .+.. ................. ++.+. .. .......+|+|
T Consensus 91 ~~~~~~i~~v~q~~~-l~~--~tv~-------~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 91 HTLRSRLSIILQDPI-LFS--GSIR-------FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred HHHhhhEEEECCCCc-ccc--cHHH-------HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 011122333322 111 1111 11111111111111121 22221 11 11234589999
Q ss_pred cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
++||++++.++..+++++|+|||+..+|+...+.+.++++. .|+++|+.+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 216 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVS 216 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChH
Confidence 99999999999999999999999999999888877777763 256666654
No 291
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.5e-21 Score=159.47 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=120.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCc--
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDV-- 151 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~-- 151 (270)
.++++||+-..+... .+.+++|++.+||++-|.||||||||||+|+|+|++. |++|++ +.+... .+.+
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 356778877777643 6799999999999999999999999999999999995 666663 222100 0100
Q ss_pred eEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 152 g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
-...++.-..--...++++||..+..+..+. .+...+.+.++.+++.. ++....+|-||++|+++++.+...+++
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 0001111111112446777887777766654 23355667777777764 555668999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhcc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~ 253 (270)
.|+|||+..+|......+..++..
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAA 175 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHH
Confidence 999999999999888887777773
No 292
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.85 E-value=1.4e-21 Score=168.06 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=110.0
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---------
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------- 148 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--------- 148 (270)
.+.++.+.|++. ..+++++||++++|++++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 2 ~~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 456888889753 237799999999999999999999999999999999985 788873 3332110
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCccc
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~ 213 (270)
.....++.++... +. .+..++... ... .........++.+.+. ...++..+|+|+
T Consensus 76 ~~~~~i~~~~q~~~~-~~--~t~~~nl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 76 RNRYSVAYAAQKPWL-LN--ATVEENITF-----GSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhcceEEEEcCCCcc-cc--ccHHHHHhh-----cCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 0111223333321 11 222221111 111 1122222333333221 123566899999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH--hhc-------cceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS--MFD-------EKCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~--~~~-------~~i~v~~~~~~ 263 (270)
+||++++.++..+++++|+|||+..+|...++.+.+ ++. ..|+++|+.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 999999999999999999999999999987776554 222 23777777643
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=5.9e-22 Score=165.31 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=96.2
Q ss_pred ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCC
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~ 160 (270)
.||+|.|++.. ++.+ +|++++||+++|+||||||||||+++|+|++ +|+.|. |.++|.
T Consensus 4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----------------~p~~G~-i~~~g~ 61 (177)
T cd03222 4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL----------------IPNGDN-DEWDGI 61 (177)
T ss_pred CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC----------------CCCCcE-EEECCE
Confidence 47889997633 5677 4899999999999999999999999999998 677788 777764
Q ss_pred CccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225 161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (270)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l 239 (270)
.+ ++ ++.. .+|+||+||++++.++..+++++++|||+..+
T Consensus 62 ~i------------------~~~~q~~---------------------~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 62 TP------------------VYKPQYI---------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred EE------------------EEEcccC---------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 21 11 1100 09999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhc--------cceEEecccc
Q 024225 240 DGGVWKDVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 240 De~~~~~l~~~~~--------~~i~v~~~~~ 262 (270)
|+..++.+.+++. ..|+++|+.+
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 9987776666664 2367777664
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=7e-22 Score=169.66 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=102.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC--CCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--DSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~--~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~ 173 (270)
+|+|+||++++|+++||+||||||||||+++|+|++. |++|++. ++... + +..+.. ..+.++..++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-~-----~~~~~~--l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-P-----LGANSF--ILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-c-----cccccc--cCCcCcHHHHH
Confidence 5799999999999999999999999999999999984 6777642 22110 0 111111 11224555555
Q ss_pred HHHHHhcCCCCCccHHHHH-HHHHhhcc--CCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHh
Q 024225 174 KEAHARRGAPWTFNPLLLL-NCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (270)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~-~~l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~ 250 (270)
......++.. ..... .+.+...+ ..+..+..||+||+||++++.++..+++++|+|||+..+|....+.+.++
T Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 71 RMMASLYGLD----GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHcCCC----HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 4433333421 11111 12222222 23456679999999999999999999999999999999999777766665
Q ss_pred hc------cceEEeccccc
Q 024225 251 FD------EKCYATSFKET 263 (270)
Q Consensus 251 ~~------~~i~v~~~~~~ 263 (270)
+. -.|+++|+.+.
T Consensus 147 l~~~~~~~~ii~vsH~~~~ 165 (213)
T PRK15177 147 LACQLQQKGLIVLTHNPRL 165 (213)
T ss_pred HHHHhhCCcEEEEECCHHH
Confidence 42 23677777643
No 295
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=1e-21 Score=189.62 Aligned_cols=172 Identities=17% Similarity=0.132 Sum_probs=115.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
.++++||++.|++..+ .+++|+||++++|++++|+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 5899999999976322 26799999999999999999999999999999999994 666663 232110 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~ 215 (270)
....++.++.+... -+..+|. .++.+ ....+.+.+.++.... |.+. ....+||||+|
T Consensus 395 r~~i~~v~Q~~~lf~---~ti~~Ni-----~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA---GTIAENI-----RLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HhheEEEcCCCcccC---cCHHHHH-----hccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 01222444443211 1221111 11111 1222333344333322 2222 23479999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
|+++++++..+++++|+|||+..+|+...+.+.+.+.. .|.|+|+.+
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 518 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA 518 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 99999999999999999999999999888877766663 377777764
No 296
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.6e-21 Score=155.73 Aligned_cols=172 Identities=18% Similarity=0.180 Sum_probs=121.3
Q ss_pred eEEeccchhhhhhhh---cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCC--------
Q 024225 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-------- 145 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~---~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~-------- 145 (270)
.+.++||+|.|--.. -.+.+++++||+++.||+|+|-||||+|||||+|+|.+.+. ||+|.++-.+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 488999999994322 23667899999999999999999999999999999999995 6766632110
Q ss_pred CCCC---------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC---cCCCCCCccc
Q 024225 146 VKPP---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGV 213 (270)
Q Consensus 146 ~~~p---------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~---~~~~~~S~g~ 213 (270)
...| +.|. +++.=..+++ ....+-..+.....|++..........++..+...+. ..+..||||+
T Consensus 81 ~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 TAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred ccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 0011 1121 2222111121 2222222223334555443334445667777777654 4466999999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~ 254 (270)
+||+.++..++.+..||++|||+..||...+.-+.++++++
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965
No 297
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=4e-22 Score=165.09 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=110.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
+++++++|+..|++.. |+.++||++.+||.-+|+|||||||||++..|.|-. +|+.|. +
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt----------------rp~~G~-v 62 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT----------------RPQEGE-V 62 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC----------------CCCcce-E
Confidence 5689999999999976 999999999999999999999999999999999987 556666 4
Q ss_pred ecCC-CCccc---------------------cccCcccChHHHHHhc-CC-------CCCccHHHHHHHHHhhccCCC--
Q 024225 156 PMDG-FHLYL---------------------SQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQGS-- 203 (270)
Q Consensus 156 ~~dg-~~~~~---------------------~~l~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~l~~l~~~~~-- 203 (270)
.++| .++.. ..+++++|.+....+. ++ .......++.++++.++++..
T Consensus 63 ~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~ 142 (249)
T COG4674 63 LFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD 142 (249)
T ss_pred EEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh
Confidence 4444 32221 1123333333221110 00 001112234455555555543
Q ss_pred cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
.....+||||+|++++...+..+|++|++|||+.++-+.-.++..++++
T Consensus 143 ~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~ 191 (249)
T COG4674 143 RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191 (249)
T ss_pred hhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHH
Confidence 3445889999999999999999999999999999998766666667666
No 298
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=1.3e-21 Score=171.77 Aligned_cols=169 Identities=16% Similarity=0.122 Sum_probs=112.8
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----C
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P----D 150 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p----~ 150 (270)
+++||++. . +|+++||++++|++++|+||||||||||+++|+|++ +.+|++ +++.... + .
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 45677774 1 679999999999999999999999999999999987 457874 4432111 1 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhcc---
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL--- 225 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~--- 225 (270)
...+++++..... .++..++..... ..+...........++++.+++.. +..+..+|+|++||+.++.++..
T Consensus 70 ~i~~v~q~~~~~~--~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 70 HRAYLSQQQTPPF--AMPVFQYLTLHQ-PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred heEEecccCccCC--CccHHHHHHhcC-ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 1122444432211 133333222110 111111111234566777776653 45667999999999999999975
Q ss_pred ----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 226 ----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 226 ----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+++++|+|||+..+|...++.+.+++. ..|+++|+.+
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 679999999999999988877777775 2367777765
No 299
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=9.4e-22 Score=196.04 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=111.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
.++++||++.|++.. .+|+|+||+|++|+.+||+||||||||||+++|+|++. |++|++ +++... .+
T Consensus 473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 589999999997421 26799999999999999999999999999999999994 555552 222100 00
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCc----CCCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~~~ 215 (270)
....++.++.+... -+..+|. .++.....+.+.+.+.++..+ .|.+. ....+|+||+|
T Consensus 547 r~~i~~v~Q~~~lf~---gTI~eNi-----~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 547 RQFINYLPQEPYIFS---GSILENL-----LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHheEEEecCceehh---HHHHHHH-----hccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 11122444443211 1111111 111111223333333333222 22222 23479999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~~~~~ 262 (270)
|+++++++..+++++|+||++..+|+...+.+.+.+. ..|.|+|..+
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~ 670 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS 670 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchH
Confidence 9999999999999999999999999977776666554 3367777653
No 300
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=177.49 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=119.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCccc-CCCCCCC----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~--~~~~~G~~-~~~~~~~---- 148 (270)
.+++++|+++.|.+.. ..+|+|+||+|++|+++||+||||||||||+++|+|++.. ..|++|.+ +++....
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4799999999996421 2367999999999999999999999999999999999731 01346663 3332110
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCc-cHHHHHHHHHhhccC------CCcCCCCCCcccCCh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~l~~l~~~------~~~~~~~~S~g~~~r 216 (270)
.....+++++.... . .+..++..+.....+..... .......+++.+.+. .......+|+||+||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 01122244443321 1 33334333211111111000 011134455555432 234566899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
+.+++++..++++||+|||+..+|....+.+.+.+. ..|+++|+.+.
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~ 286 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999977777776666 23677777654
No 301
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-21 Score=179.63 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=116.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++.. ..+|+|+||++++||.|+|+|+||||||||+++|+|.+ .|+.|. |.
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~----------------~~~~G~-i~ 396 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW----------------DPQQGS-IT 396 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc----------------CCCCCe-ee
Confidence 689999999999844 45679999999999999999999999999999999998 455555 55
Q ss_pred cCCCCccccccCcc----------cCh----HHHHHh--cCCCCCccHHHHHHHHHhhccCC---------Cc----CCC
Q 024225 157 MDGFHLYLSQLDAM----------EDP----KEAHAR--RGAPWTFNPLLLLNCLKNLRNQG---------SV----YAP 207 (270)
Q Consensus 157 ~dg~~~~~~~l~~~----------~~~----~~~~~~--~g~~~~~~~~~~~~~l~~l~~~~---------~~----~~~ 207 (270)
+.|.++.. ++.. +.. .-.+.+ .+-+. -..+.+.+.++.+++.+ +. ...
T Consensus 397 ~~g~~~~~--l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~ 473 (573)
T COG4987 397 LNGVEIAS--LDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR 473 (573)
T ss_pred ECCcChhh--CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC
Confidence 55543322 1100 000 001111 22222 22344445555554321 11 234
Q ss_pred CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225 208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK 261 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~ 261 (270)
.||||++||+++++++..+++++|+|||+-+||+..-+++.+.+.+ .++|||+.
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 8999999999999999999999999999999999888887777763 38888876
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=1.2e-21 Score=195.35 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=114.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++.. ...+|+|+||++++||+++|+||||||||||+++|.|++. |++|++ +++...
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 589999999997532 1236799999999999999999999999999999999994 666653 332100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCcC----CCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~~ 214 (270)
+. ...++.++.+... -+..+|. .+|.+ ..+.+.+.+.++... .|.+.. ...+|+||+
T Consensus 554 r~-~i~~v~Q~~~lF~---gTIreNI-----~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 554 HR-QVALVGQEPVLFS---GSVRENI-----AYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred Hh-hceEEecCccccc---cCHHHHH-----hcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 01 1222455443221 1221111 11222 122334444444332 222222 247999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~~ 262 (270)
||+++++++..+++++|+||++..+|+...+.+.+... ..|.|+|..+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~ 675 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLS 675 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHH
Confidence 99999999999999999999999999988777776322 3477777753
No 303
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=1.5e-21 Score=190.34 Aligned_cols=171 Identities=14% Similarity=0.092 Sum_probs=114.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
..++++||++.|++..+ .+|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 337 ~~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CeEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 35899999999975322 26799999999999999999999999999999999994 555552 2221000 0
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccCC--------Cc----CCCCCCcccC
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG 214 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~~~--------~~----~~~~~S~g~~ 214 (270)
....+++++.+... -+. +.+..+. ...+.+.+.+.++..+... +. ....+|+||+
T Consensus 412 ~r~~i~~v~Q~~~lf~---~ti-------~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 412 LRQAISVVSQRVHLFS---ATL-------RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHhheeEEcccchhhc---ccH-------HHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 01122444432211 111 1222221 1223344455555444322 11 2346999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
||+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.++|..
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~ 534 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL 534 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCh
Confidence 99999999999999999999999999988887777765 236666665
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=3.6e-21 Score=189.92 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=127.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++|+++.|+.......+++++||++++||+++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 468999999999642212336799999999999999999999999999999999985 788873 4442111
Q ss_pred -----CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 149 -----p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
.....++.++...+. +++..++........+...........++++.+++.. +..+..+|+||+||+.++.
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHH
Confidence 112233555443211 1343444433222223222222334566777776653 4456689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
++..+|+++|+|||+..+|...++.+.+++.+ .|.++|+.+
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 99999999999999999999888888777752 266677664
No 305
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-21 Score=186.24 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=117.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
+.+++++++.. . +++|+||+|++|+++||+||||||||||+|+|+|+++ |++|++ +++.... +
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 36888999732 1 6799999999999999999999999999999999985 777774 3332111 0
Q ss_pred ---CceEEeecCCC-CccccccCcccChHHHHHhc----CC--CCCccHHHHHHHHHhhccC---CCcCCCCCCcccCCh
Q 024225 150 ---DVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (270)
Q Consensus 150 ---~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~r 216 (270)
....+++++.. ......++..++........ ++ ..........++++.+++. .+..+..||+||+||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 01122333321 00111133333222110000 10 0001123456777777763 245677999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+.++.++..++++||+|||+..+|...++.+.++++ ..|+++||.+
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 999999999999999999999999998888887764 3377777764
No 306
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.2e-21 Score=162.58 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=99.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
+|+++||+....+.. .+++++|++.+||+++|+||||||||||+|.|+|.+ .|+.|. +.
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel----------------~p~~G~-v~ 59 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL----------------SPDSGE-VT 59 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc----------------CCCCCe-Ee
Confidence 478899999988754 669999999999999999999999999999999999 455555 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCc---------------------------cHHHHHHHHHhhccC--CCcCC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---------------------------NPLLLLNCLKNLRNQ--GSVYA 206 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~---------------------------~~~~~~~~l~~l~~~--~~~~~ 206 (270)
++|..+.. ++. +...+.+++ +++- +..-....+...... ....+
T Consensus 60 ~~g~~l~~--~~~----~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y 133 (259)
T COG4559 60 LNGVPLNS--WPP----EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133 (259)
T ss_pred eCCcChhh--CCH----HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch
Confidence 55544322 111 111111111 1111 111122333333221 34456
Q ss_pred CCCCcccCChhhhhhhhcc------CCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 207 PSFDHGVGDPVEDDILVGL------QHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~~------~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..+|||++||+.+++.+.. ..++|++|||+..||-..+..+..+.+
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 7999999999999976654 345999999999999866655555444
No 307
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.84 E-value=7.5e-21 Score=185.56 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=115.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
.++++||++.|++.. ..+|+|+||++++|+.+||+|+||||||||+++|+|++. |++|++ +++....
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 489999999997532 226799999999999999999999999999999999994 666663 3331100
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCC--CCCccHHHHHHHHHhhc---------cCCCcC----CCCCCccc
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGV 213 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~--~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~ 213 (270)
.....++++|.+... -+ .+.+..+ +...+.+.+.+.++..+ .|.+.. ...+||||
T Consensus 416 ~~~i~~v~Q~~~lf~---~T-------i~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq 485 (582)
T PRK11176 416 RNQVALVSQNVHLFN---DT-------IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485 (582)
T ss_pred HhhceEEccCceeec---ch-------HHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence 011222444443221 11 2222222 22344444544444332 332322 24699999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
+||+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 999999999999999999999999999977666665554 347777766
No 308
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=1.9e-21 Score=190.18 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=112.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---- 148 (270)
.++++|+++.|++. . .+|+|+||++++|+++||+|+||||||||+++|+|++. |++|++ +++... .
T Consensus 340 ~i~~~~v~f~y~~~-~--~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD-N--LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC-C--ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999742 1 26799999999999999999999999999999999994 555552 222100 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~ 215 (270)
.....++++|.+-... +. +.+..+....+.+.+.+.++..+. |.+. ....+|+||+|
T Consensus 414 ~~~i~~v~Q~~~lF~~---Ti-------~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD---TF-------LANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HhheEEEccCCccccc---hH-------HHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 0112224444432111 11 122222112334444444444332 2222 23469999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
|+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~ 535 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL 535 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 9999999999999999999999999977777766664 336666655
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=4.6e-21 Score=186.83 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=120.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++|+++.|++. .|+++||++++||++||+||||||||||+|+|+|+++ |++|++.-. ...+ ++
T Consensus 339 ~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~----~~i~-y~ 405 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE----LKIS-YK 405 (590)
T ss_pred eEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe----eeEE-Ee
Confidence 579999999999751 3699999999999999999999999999999999985 677764221 0112 23
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
.++... ...+++.++........+ ......++++.+++.. +..+..+|+||+||++++.++..+++++|+|
T Consensus 406 ~Q~~~~--~~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD 478 (590)
T PRK13409 406 PQYIKP--DYDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD 478 (590)
T ss_pred cccccC--CCCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 333211 122344433322111111 1123456777776643 5567799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhcc--------ceEEeccccc
Q 024225 234 GNYLFLDGGVWKDVSSMFDE--------KCYATSFKET 263 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~~~ 263 (270)
||+..||...+..+.+++.. .|+++||.+.
T Consensus 479 EPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~ 516 (590)
T PRK13409 479 EPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM 516 (590)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999888777777652 3788887653
No 310
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.84 E-value=5.6e-21 Score=185.31 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=111.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++.. .+|+|+||++++|++++|+||||||||||+++|+|++ +|+.|. |.
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~----------------~~~~G~-i~ 381 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY----------------QPQSGE-IL 381 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EE
Confidence 589999999997421 2679999999999999999999999999999999998 455555 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-C--------------CCccHHHHHHHHHhhccCCCcC-------CCCCCcccC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-P--------------WTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVG 214 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~--------------~~~~~~~~~~~l~~l~~~~~~~-------~~~~S~g~~ 214 (270)
+||.++.... ....+...++ + ...+.+...+.++.+..+.... ...+|+||+
T Consensus 382 ~~g~~~~~~~------~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 382 LDGKPVTAEQ------PEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQK 455 (547)
T ss_pred ECCEECCCCC------HHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHH
Confidence 5554432110 0001111111 0 1122334455566665543321 247999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~ 261 (270)
||+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 99999999999999999999999999977766544332 347788875
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=5.8e-21 Score=183.37 Aligned_cols=175 Identities=12% Similarity=0.081 Sum_probs=119.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++|+++ . +++++||++++||++||+||||||||||+++|+|+++ |++|++ +++....
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4789999984 1 5799999999999999999999999999999999985 788884 3332110
Q ss_pred ---CCceEEeecCCC-CccccccCcccChHHHHH-hc----C-CCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCC
Q 024225 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (270)
Q Consensus 149 ---p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~ 215 (270)
...+ ++.++.. ......+++.++...... .. + ...........++++.+++. .+..+..+|+||+|
T Consensus 324 ~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIV-YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCE-EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 1123 2454431 001112333333322110 00 1 00011123456777877763 34567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
|+.++.++..+++++|+|||+..+|+...+.+.+++.. .|+++|+.+.
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 99999999999999999999999999888777777763 3788887653
No 312
>PLN03073 ABC transporter F family; Provisional
Probab=99.84 E-value=6.3e-21 Score=189.29 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=122.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||++.|++.. .+|+++||+|++|+++||+||||||||||+|+|+|++. |++|++..+. ....+ ++
T Consensus 507 ~~L~~~~ls~~y~~~~---~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~--~~~ig-yv 577 (718)
T PLN03073 507 PIISFSDASFGYPGGP---LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA--KVRMA-VF 577 (718)
T ss_pred ceEEEEeeEEEeCCCC---eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC--ceeEE-EE
Confidence 5799999999996421 26799999999999999999999999999999999985 7777753221 11122 24
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEEE
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilIl 232 (270)
.++.. . .++...+....... ..+ ........++++.+++.. ...+..+|+||+||++++.++..++++||+
T Consensus 578 ~Q~~~--~--~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 578 SQHHV--D--GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred ecccc--c--cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44321 1 12222221111111 011 122345677888887752 456779999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 233 DGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 233 d~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
|||+..||....+.+.+.+.. .|+++||.+
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~ 685 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEH 685 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 999999999888887777653 477777764
No 313
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.84 E-value=2.9e-21 Score=187.98 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=108.3
Q ss_pred eEEeccchhhhhh-hhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
.++++||++.|++ .. +++|+||++++||.+||+|||||||||++++|+|++ .|+.|. |
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~----------------~~~~G~-I 386 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY----------------DPTSGE-I 386 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC----------------CCCCCe-E
Confidence 4899999999985 23 679999999999999999999999999999999999 444455 4
Q ss_pred ecCCCCccccccCcccChHHHHHhcC------------------C--CCCccHHHHHHH---------HHhhccCCCcC-
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRG------------------A--PWTFNPLLLLNC---------LKNLRNQGSVY- 205 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g------------------~--~~~~~~~~~~~~---------l~~l~~~~~~~- 205 (270)
.+||.++.... .+..++..+ + +. ...+.+.+. ++++-.|-+..
T Consensus 387 ~idg~dI~~i~------~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 387 LIDGIDIRDIS------LDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred EECCEehhhcC------HHHHHHhccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 44554443211 111222222 2 11 112222222 22331122222
Q ss_pred ---CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 206 ---APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 206 ---~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
...+|+||+||+++++++..+++++|+||++..+|...-+.+.+.++ ..+-|.|..
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 23789999999999999999999999999999999987777777775 334455554
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=7.9e-21 Score=182.83 Aligned_cols=175 Identities=19% Similarity=0.168 Sum_probs=116.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
++++++|+++ . +|+++||++++|+++||+||||||||||+|+|+|++. |++|++ +++.....
T Consensus 267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4689999984 1 4799999999999999999999999999999999985 778874 33321110
Q ss_pred ---CceEEeecCCC--CccccccCcccChHHH-HHhcCCC--CCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhh
Q 024225 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEA-HARRGAP--WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (270)
Q Consensus 150 ---~~g~~i~~dg~--~~~~~~l~~~~~~~~~-~~~~g~~--~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~ 218 (270)
....++.++.. .++ ..++..++.... ....... .......+.++++.+++. .+..+..+|+||+||+.
T Consensus 335 ~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 01112333210 111 112222221110 0001110 111122345677777764 24567799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
++.++..++++||+|||+..+|...++.+.+++.. .|+++||.+.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~ 465 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE 465 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 99999999999999999999999888887777663 3788887643
No 315
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.84 E-value=3.7e-21 Score=187.20 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=114.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
.++++||++.|++..+ .+|+|+||++++|++++|+|+||||||||+++|+|++. |++|++ +++....
T Consensus 330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 4899999999975322 26799999999999999999999999999999999994 556653 2221000
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCC--CCccHHHHHHHHHhhcc---------CCCcC----CCCCCccc
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGV 213 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~ 213 (270)
.....+++++.+... -+ .+.+..+. ...+.+.+.+.++..+. |.+.. ...+|+||
T Consensus 405 ~~~i~~v~Q~~~lf~---~T-------i~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 405 RRQVALVSQDVVLFN---DT-------IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HhhceEEccCccccc---cc-------HHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 011222444443211 11 22222221 23444555444444332 22222 23689999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
+||+++++++..+++++++|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 999999999999999999999999999987777766554 336777776
No 316
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=4.1e-21 Score=191.04 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=111.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++..+ .+|+|+||++++|+.++|+|+||||||||+|+|+|++. |++|++ +++...
T Consensus 455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 5899999999975322 26799999999999999999999999999999999993 555542 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHh---------hccCCCc----CCCCCCccc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKN---------LRNQGSV----YAPSFDHGV 213 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~---------l~~~~~~----~~~~~S~g~ 213 (270)
+...+ ++.++.+... -+. +.+..+. ...+.+.+.+.++. +-.|.+. ....+|+||
T Consensus 530 r~~i~-~v~q~~~lf~---~ti-------~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 530 RRQMG-VVLQENVLFS---RSI-------RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred HHhCe-EEccCCeehh---hhH-------HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 00111 2333332211 011 1122111 11223333333332 2222221 234799999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
+||+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.++|+.+
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 653 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChH
Confidence 999999999999999999999999999987777766665 3377777664
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=9.1e-21 Score=166.22 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=99.6
Q ss_pred ccccceec-----CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcc
Q 024225 97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (270)
Q Consensus 97 l~~isl~i-----~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~ 170 (270)
+.++++++ ++|++++|+||||||||||+++|+|++. |++|++ +++. ..+ ++.++... ....++.
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~-~~~q~~~~--~~~~tv~ 79 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVS-YKPQYIKA--DYEGTVR 79 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEE-EecccccC--CCCCCHH
Confidence 35555555 5799999999999999999999999984 667764 2221 111 12222111 1113333
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH
Q 024225 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (270)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~ 248 (270)
++........+ .......++++.+++.. +..+..+|+||+||++++.++..+++++|+|||+..||...+..+.
T Consensus 80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 32221111111 01122345666665543 4556799999999999999999999999999999999998777776
Q ss_pred Hhhcc--------ceEEecccc
Q 024225 249 SMFDE--------KCYATSFKE 262 (270)
Q Consensus 249 ~~~~~--------~i~v~~~~~ 262 (270)
+++.. .|+++|+.+
T Consensus 156 ~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 156 KVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH
Confidence 66552 377787764
No 318
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=7.1e-21 Score=187.66 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=121.3
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--Cccc-CCCCCCC---CCce
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASS-FDSQVKP---PDVA 152 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--~G~~-~~~~~~~---p~~g 152 (270)
..+|+++.|++.. +|+|+|+++++||++||+||||||||||+++|+|++. ++ +|++ +++.... ....
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 3567889997633 6799999999999999999999999999999999984 53 6774 4442111 1112
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccCC-------CcCCCCCCcccCChhhhhh
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~~-------~~~~~~~S~g~~~rv~~~~ 221 (270)
.++.+++.... .+++.++...... ...+... ......++++.+++.. +.....+|+||+||+.++.
T Consensus 143 ~yv~Q~~~l~~--~lTV~E~l~~~a~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 143 GFVTQDDILYP--HLTVRETLVFCSL-LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred EEECcccccCC--cCCHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 33666554332 2566665554322 2222111 1233566777776643 2245689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
++..+++++++|||+.+||......+.++++. .|.++|+.+
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 99999999999999999999887777777752 255555554
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=4.2e-21 Score=187.52 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=114.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---- 148 (270)
.++++||++.|++.. .+++|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 589999999997521 25799999999999999999999999999999999995 677763 333110 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccCCC----cCCCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~----~~~~~~S~g~~~ 215 (270)
.....++.++.+... .+..+|. .++.+. ...+.+.+.++ .+-.+.+ .....+|+||+|
T Consensus 408 ~~~i~~v~q~~~lf~---~ti~~Ni-----~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 408 RKSIATVFQDAGLFN---RSIRENI-----RLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HhheEEEccCCccCc---ccHHHHH-----hcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 011223555543221 1222111 112121 12222322222 2211211 234479999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
|+++++++..+++++|+|||+..+|....+.+.+.+. ..|.++|+.+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~ 531 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChH
Confidence 9999999999999999999999999988887777665 3377777763
No 320
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=7.2e-21 Score=192.20 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=126.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
-++++||++.|+..+ .+.+++|+||++++|+.+||+|||||||||.+.+|-+.+ .|+.|. |.
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY----------------dp~~G~-V~ 1048 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY----------------DPDAGK-VK 1048 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc----------------CCCCCe-EE
Confidence 389999999999643 477889999999999999999999999999999999999 788888 99
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----------------------------CCcC---
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------GSVY--- 205 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----------------------------~~~~--- 205 (270)
+||+++.+. +...+++..++-.|...-.-.++.||+..| -+..
T Consensus 1049 IDg~dik~l------nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1049 IDGVDIKDL------NLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred ECCcccccC------CHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 999887652 233455566654333222224555555544 1221
Q ss_pred -CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 206 -APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 206 -~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
.-++||||+||+++++++..+|+||++||.+..||-+.-+-+.+.+| ..|.|.|-.
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 23889999999999999999999999999999999988888888888 336666544
No 321
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.83 E-value=4.8e-21 Score=187.26 Aligned_cols=170 Identities=18% Similarity=0.142 Sum_probs=113.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
.++++||++.|++.. . +|+|+||++++|++++|+|+||||||||+|+|+|++. |++|.+ +++....
T Consensus 334 ~I~~~~vsf~y~~~~-~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR-Q--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC-c--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 589999999997421 2 6799999999999999999999999999999999995 666663 3331100
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCc----CCCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~~~ 215 (270)
.....+++++.+... -+..+|. .++-+ ..+.+.+...++..+ .|.+. ....+|+||+|
T Consensus 408 r~~i~~v~Q~~~lf~---~Ti~~Ni-----~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 408 RRNIAVVFQDAGLFN---RSIEDNI-----RVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HhheEEEecCccccc---ccHHHHH-----hcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 012233555543221 1221111 11111 122333333333322 22222 23469999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
|+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 9999999999999999999999999977776665443 347777775
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=4.5e-21 Score=168.97 Aligned_cols=171 Identities=13% Similarity=0.043 Sum_probs=106.4
Q ss_pred ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCC
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~ 160 (270)
.+|++.|+... .+++|+++ +.+|++++|+||||||||||+++|+|+++ |++|++...+ +.....-.++|.
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~---~~~~~~~~~~g~ 73 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPP---DWDEILDEFRGS 73 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeecc---ccchhhhhccCc
Confidence 47899996421 36799995 99999999999999999999999999984 5555431000 000000013333
Q ss_pred Cccccc----------------cCcccC--hHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 161 HLYLSQ----------------LDAMED--PKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 161 ~~~~~~----------------l~~~~~--~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
.+.... ...... ....... +..........++++.+++.. +..+..+|+|++||+.++
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 74 ELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhhhhhHHhhhcccceeeecchhccCchHHHHHHHHH--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 221100 000000 0000000 000111233455666666543 345568999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
.++..+++++|+|||+..+|...++.+.+++. ..|+++|+.+.
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999999999999999999976666665554 23777777643
No 323
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=5.2e-21 Score=186.95 Aligned_cols=169 Identities=15% Similarity=0.104 Sum_probs=115.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
.++++||++.|.+. + .+|+|+||++++|+.+||+||||||||||+++|+|++ |++|++ +++.... +
T Consensus 349 ~i~~~~vsf~~~~~-~--~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDG-K--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence 48999999755431 1 2679999999999999999999999999999999997 677773 3432110 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hccCCCcC----CCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~~S~g~~~ 215 (270)
....+++++.+-.. -+..+|. .+|- .+.+.+.+.+.++. +-.|.+.. ...+||||+|
T Consensus 422 r~~i~~v~Q~~~LF~---~TI~eNI-----~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ 492 (588)
T PRK11174 422 RKHLSWVGQNPQLPH---GTLRDNV-----LLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492 (588)
T ss_pred HhheEEecCCCcCCC---cCHHHHh-----hcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH
Confidence 12334666665322 1222221 1221 22334444444333 32233322 3469999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
|+++++++..+++++|+||++..+|....+.+.+.+. ..|.|+|..
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 9999999999999999999999999987777776654 337777776
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4.9e-21 Score=156.52 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=96.6
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg 159 (270)
++++++.|++.. ++++++|++++|++++|+|+||||||||+++|+|++ .|..|. +.+++
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~----------------~~~~G~-i~~~~ 60 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL----------------KPTSGE-ILIDG 60 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCccE-EEECC
Confidence 467888887532 779999999999999999999999999999999998 677888 78887
Q ss_pred CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (270)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l 239 (270)
..+.. . .........++. +++|+|+++|+.++.++..+++++|+|||+..+
T Consensus 61 ~~~~~-----~-~~~~~~~~i~~~-----------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 61 KDIAK-----L-PLEELRRRIGYV-----------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred EEccc-----C-CHHHHHhceEEE-----------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 64321 0 011112222221 119999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhc
Q 024225 240 DGGVWKDVSSMFD 252 (270)
Q Consensus 240 De~~~~~l~~~~~ 252 (270)
|...+..+.+.+.
T Consensus 112 D~~~~~~l~~~l~ 124 (157)
T cd00267 112 DPASRERLLELLR 124 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 9977777766654
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=170.15 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=136.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--Ccc-cCCCC------
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQ------ 145 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~--~G~-~~~~~------ 145 (270)
+++++++||+..|......+.++++|||+|++||.+||+|+||||||-.+..|++++...-.- +|+ .|++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 468999999999986656677999999999999999999999999999999999999321111 222 23332
Q ss_pred -----CCCCCceEEeecCCCCccccccCcc-cChHHHHHhcCCCCCccHHHHHHHHHhhccCC-----CcCCCCCCcccC
Q 024225 146 -----VKPPDVATVLPMDGFHLYLSQLDAM-EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVG 214 (270)
Q Consensus 146 -----~~~p~~g~~i~~dg~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~S~g~~ 214 (270)
..++....+|++....-.++-.+.. +..+.++...|+.......+.+++++.++..+ +.|+.++|||++
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 1233344445555443222211111 12223334455554455566788888888753 458889999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~ 261 (270)
||+.++.+++.+|++||-|||+-.||-..+.++.++++. .+|||||.
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 999999999999999999999999999999999988883 38999987
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=3.2e-20 Score=165.83 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=105.1
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCce
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA 152 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g 152 (270)
..+.++++|+++. .. .+|+++||++++|+++||+|+||||||||+++|+|++. |++|++ +++ ..+
T Consensus 36 ~~~~l~i~nls~~--~~----~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~ 101 (282)
T cd03291 36 DDNNLFFSNLCLV--GA----PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RIS 101 (282)
T ss_pred CCCeEEEEEEEEe--cc----cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEE
Confidence 3456899999985 21 26799999999999999999999999999999999984 566653 222 112
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCC----CcCCCCCCcccCChhhh
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVED 219 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~~S~g~~~rv~~ 219 (270)
++.++.+. +. .+..++. .++.. .........++.+. .+. ...+..+|+|++||+.+
T Consensus 102 -yv~q~~~l-~~--~tv~enl-----~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l 170 (282)
T cd03291 102 -FSSQFSWI-MP--GTIKENI-----IFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL 170 (282)
T ss_pred -EEeCcccc-cc--cCHHHHh-----hcccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence 23333221 11 1221111 11111 11111112222111 111 11245899999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEecccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKE 262 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~ 262 (270)
+.++..+++++|+|||+..+|....+.+.+. +. ..|+++|+.+
T Consensus 171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~ 220 (282)
T cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220 (282)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChH
Confidence 9999999999999999999999877766653 22 2367777654
No 327
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=9.3e-21 Score=184.59 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=112.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---- 148 (270)
.++++++++.|+... ..+|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++... .
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 488999999997522 226799999999999999999999999999999999994 666663 222110 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~ 215 (270)
.....++.++.+... -+..+|. .++.+ ....+.+...++.... |.+. ....+|+||+|
T Consensus 388 ~~~i~~v~q~~~lf~---~ti~~Ni-----~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 RSRLAVVSQTPFLFS---DTVANNI-----ALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhheEEEccCCeecc---ccHHHHH-----hcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 011122444432111 1111111 11211 1233333333333221 2121 23479999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
|+++++++..+++++|+|||+..+|....+.+.+.++ ..|.++|+.+
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~ 511 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence 9999999999999999999999999988777776664 3367777653
No 328
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.7e-21 Score=167.91 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=116.3
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC------------CCC
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ------------VKP 148 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~------------~~~ 148 (270)
|+.+.+++.. -+++|+.+..-+.+|.|+||||||||+++|+|+++ |++|.+ .++. .++
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 5566666532 57889998889999999999999999999999996 777763 2221 011
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
-..|. +++|..-.+ ++++..|..+.... .+...+..+.+.++.+ .+.++..+|||++||+++..++...
T Consensus 76 RriGY-VFQDARLFp--H~tVrgNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 76 RRIGY-VFQDARLFP--HYTVRGNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred heeee-Eeecccccc--ceEEecchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 12343 666665333 35665544332211 1344566677777765 3678889999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc-------c-ceEEeccccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------E-KCYATSFKET 263 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~-~i~v~~~~~~ 263 (270)
|++|++|||+..||.+-.+++...+. . .+||+|..++
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 99999999999999855554444443 2 2899998865
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.5e-20 Score=198.54 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=116.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-C-CCCCCC------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F-DSQVKP------ 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~-~~~~~~------ 148 (270)
.++++||++.|+... ...+|+|+||++++|+++||+||||||||||+++|+|++. |++|++ + ++....
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 589999999998532 2337799999999999999999999999999999999995 777773 3 221110
Q ss_pred --CCceEEeecCCCCccccccCcccChHHHHHhc-C--------------------------------------------
Q 024225 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------------------------------------------- 181 (270)
Q Consensus 149 --p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~-g-------------------------------------------- 181 (270)
...+ ++.++... +. .+..++..+..... +
T Consensus 458 lr~~Ig-~V~Q~~~L-F~--~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 458 WRSKIG-VVSQDPLL-FS--NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHhcc-Eecccccc-hh--ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 1122 25554432 21 23333322210000 0
Q ss_pred C------CCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225 182 A------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 182 ~------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~ 242 (270)
+ ......+.+.++++.+.. +. ......+|+||+||+++++++..+|++||+|||+..+|..
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 0 001112233333333221 11 1234589999999999999999999999999999999997
Q ss_pred hHHHHHHhhc--------cceEEeccccc
Q 024225 243 VWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 243 ~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
..+.+.+.++ ..|+|+|+.+.
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 7776666654 23777877643
No 330
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=1.2e-20 Score=183.88 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=112.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
..++++||++.|+.... ..+|+|+||++++||.++|+|+||||||||+|+|+|++. |++|++ +++... .+
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 35899999999975211 226799999999999999999999999999999999994 666653 232100 00
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhc---------cCCCc----CCCCCCccc
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV 213 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~~~----~~~~~S~g~ 213 (270)
....+++++.+... -+. +.+..+. ...+.+.+.+.++..+ .+.+. ....+|+||
T Consensus 412 ~~~~i~~~~Q~~~lf~---~Ti-------~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 412 LRARMALVPQDPVLFA---ASV-------MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred HHHhceEEccCCcccc---ccH-------HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 01122444443221 111 2222221 1123334444444332 22222 234699999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
+||+++++++..+++++|+|||+..+|+...+.+.+.+. ..|.|+|+.
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL 535 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 999999999999999999999999999976665544443 347777766
No 331
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=2.6e-20 Score=178.35 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=119.6
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
|.++.++++++.|++.. +++++++++.+|+.+||+|+||||||||+|+|+|.+. |+.|++.... .....+
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence 45789999999998754 6799999999999999999999999999999999985 7777643221 111222
Q ss_pred eecCCCCccccccCcccCh-----------------------------HHHHHhcCCCCCcc-HHHHHHHHHhhccCC-C
Q 024225 155 LPMDGFHLYLSQLDAMEDP-----------------------------KEAHARRGAPWTFN-PLLLLNCLKNLRNQG-S 203 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~-----------------------------~~~~~~~g~~~~~~-~~~~~~~l~~l~~~~-~ 203 (270)
+.++...... .++.+.. ......+.-...+. ......++..+++.. +
T Consensus 71 l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 4443322111 0110000 00000000000011 123345555666554 5
Q ss_pred cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
..+..+|||++.|++++.++..+|++|++|||+..||-....-+.+.+. ..|+|+||.
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR 210 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDR 210 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 6677999999999999999999999999999999999988888877775 347888875
No 332
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=1.3e-20 Score=182.74 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=112.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
.++++|+++.|++..+ .+++|+||++++|+.++|+||||||||||+++|+|++. |++|++ +++....
T Consensus 316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 5899999999975322 26799999999999999999999999999999999984 667763 3331100
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHH---------HHHhhccCCCc----CCCCCCcccC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLN---------CLKNLRNQGSV----YAPSFDHGVG 214 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~---------~l~~l~~~~~~----~~~~~S~g~~ 214 (270)
.....++.++.+... -+.. .+..+ ....+.+.+.+ .++.+..+.+. ....+|+||+
T Consensus 391 ~~~i~~v~q~~~lf~---~ti~-------~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 391 GKHIGYLPQDVELFP---GTVA-------ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred hhheEEecCCccccc---ccHH-------HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 011222444433211 1211 12111 11122233322 23333223222 3457999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
||+++++++..+++++|+|||+..+|....+.+.+.+. ..|.++|+.+
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 99999999999999999999999999977766665443 2367777653
No 333
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.82 E-value=2.5e-20 Score=181.04 Aligned_cols=162 Identities=14% Similarity=0.026 Sum_probs=112.2
Q ss_pred eEEeccchhhhhhhhc-ccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
.++++||++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++ .|+.|. |
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~----------------~p~~G~-i 399 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY----------------IPQEGE-I 399 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------------CCCCcE-E
Confidence 5899999999975311 123679999999999999999999999999999999998 555665 5
Q ss_pred ecCCCCccccccCcccChHHHHHhcCC-C---------------CCccHHHHHHHHHhhccCCCc--------CCCCCCc
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-P---------------WTFNPLLLLNCLKNLRNQGSV--------YAPSFDH 211 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~---------------~~~~~~~~~~~l~~l~~~~~~--------~~~~~S~ 211 (270)
.+||.++.... ....+...++ + .....+...+.++.+.....+ ....+|+
T Consensus 400 ~~~g~~i~~~~------~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 400 LLDGAAVSADS------RDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred EECCEECCCCC------HHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 56665443210 0111111111 1 111223344555555443321 1247999
Q ss_pred ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHH-hhc-------cceEEeccc
Q 024225 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD-------EKCYATSFK 261 (270)
Q Consensus 212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~-~~~-------~~i~v~~~~ 261 (270)
||+||+++++++..+++++|+|||+..+|+...+.+.+ +++ ..|.|+|+.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 99999999999999999999999999999988877654 221 337777765
No 334
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=1.7e-20 Score=185.36 Aligned_cols=175 Identities=12% Similarity=0.018 Sum_probs=119.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
..++++||++.|++.. .+++|+||++++||+++|+||||||||||+++|+|++. +++|++.... ... ..++
T Consensus 450 ~~i~~~nv~~~~~~~~---~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~--~~~-i~~v 520 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD---VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA--KGK-LFYV 520 (659)
T ss_pred CeEEEEeeEEECCCCC---eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC--CCc-EEEE
Confidence 3589999999996421 26799999999999999999999999999999999984 6677642211 112 2335
Q ss_pred ecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCc-----------CCCCCCcccCChhhhhhhh
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSV-----------YAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~-----------~~~~~S~g~~~rv~~~~~l 223 (270)
.++.+... .+..++..+.....+. ......+.+.++++.+++.... +...+|+||+||+++++++
T Consensus 521 ~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 521 PQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred CCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 66554221 1332222211000001 0112234455666665543211 2358999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEecccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKE 262 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~ 262 (270)
..+|+++|+|||+..+|+...+.+.+.++. .|.++|+.+
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~ 640 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS 640 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchH
Confidence 999999999999999999888888887763 467777664
No 335
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.82 E-value=2.9e-20 Score=160.62 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--CCceEEeecCCCCccccccCcccChHHHHH
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~ 178 (270)
|++++|+++||+|+||||||||+++|+|++. |++|++ +++.... .....++..+........++..++......
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5688999999999999999999999999985 788873 4442110 111222444432211111222222211100
Q ss_pred -hcCC---CCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 179 -RRGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 179 -~~g~---~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..+. ....+...+.++++.+++.. +..+..+|+|++||++++.++..+++++|+|||+..+|...++.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0011 11112234566677776653 45667899999999999999999999999999999999988888877776
Q ss_pred -------cceEEecccc
Q 024225 253 -------EKCYATSFKE 262 (270)
Q Consensus 253 -------~~i~v~~~~~ 262 (270)
..|+++|+.+
T Consensus 158 ~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHcCCEEEEEeCCHH
Confidence 2377777765
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=3.6e-20 Score=177.35 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=124.9
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
..+++++|+++.|++. ..++.++||.|.+|+.|||+||||+|||||+|+|+|.+. |.+|++..+.. -..|.
T Consensus 319 ~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~--v~igy- 389 (530)
T COG0488 319 KLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET--VKIGY- 389 (530)
T ss_pred CeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc--eEEEE-
Confidence 3579999999999764 125699999999999999999999999999999999985 66776544321 11222
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
+.++...+. ...+. .+..... .+. .....+...+..+.+.. ...+..+|||++.|+.++..+..++.+||
T Consensus 390 f~Q~~~~l~-~~~t~---~d~l~~~--~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 390 FDQHRDELD-PDKTV---LEELSEG--FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEehhhhcC-ccCcH---HHHHHhh--Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 333332211 11111 1122211 111 12456778888888864 24556899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
+|||+..||-...+.+.+.+. ..|+|+||.
T Consensus 463 LDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr 496 (530)
T COG0488 463 LDEPTNHLDIESLEALEEALLDFEGTVLLVSHDR 496 (530)
T ss_pred EcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 999999999999999988888 348898886
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=1.4e-20 Score=186.91 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=112.2
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~ 153 (270)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|..-. | .|..|.
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g--------~p~~g~ 236 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID-----G--------IPKNCQ 236 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----C--------CCCCCE
Confidence 345799999999997633 67999999999999999999999999999999996410 1 233333
Q ss_pred EeecCCCCccccccCccc-----C----------hH-----------------------------------HHHHhcCCC
Q 024225 154 VLPMDGFHLYLSQLDAME-----D----------PK-----------------------------------EAHARRGAP 183 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~-----~----------~~-----------------------------------~~~~~~g~~ 183 (270)
+.+... .......+..+ . .. .....++..
T Consensus 237 I~~~~Q-~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 315 (718)
T PLN03073 237 ILHVEQ-EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELI 315 (718)
T ss_pred EEEEec-cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhc
Confidence 222111 11110111100 0 00 000001110
Q ss_pred CCc-cHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ce
Q 024225 184 WTF-NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KC 255 (270)
Q Consensus 184 ~~~-~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i 255 (270)
..+ .......++..+++. .+..+..||+|+++|++++.++..+|++||+|||+..||....+.+.+++.. .|
T Consensus 316 ~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tvi 395 (718)
T PLN03073 316 DAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFI 395 (718)
T ss_pred CcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 000 011233445555553 2345679999999999999999999999999999999999888888888773 37
Q ss_pred EEecccc
Q 024225 256 YATSFKE 262 (270)
Q Consensus 256 ~v~~~~~ 262 (270)
.|+|+.+
T Consensus 396 ivsHd~~ 402 (718)
T PLN03073 396 VVSHARE 402 (718)
T ss_pred EEECCHH
Confidence 7777753
No 338
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.82 E-value=6.8e-20 Score=155.60 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=116.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~ 184 (270)
+++-+|||.|+|||||||+++.|...++ .....+|++|+|+....+.+..+ .....+..|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~----------------~~~~~~I~~D~YYk~~~~~~~~~---~~~~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG----------------VEKVVVISLDDYYKDQSHLPFEE---RNKINYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC----------------cCcceEeeccccccchhhcCHhh---cCCcCccChh
Confidence 3568999999999999999999999993 22456699999987654444322 1223455688
Q ss_pred CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
++|.+.+.+.+.+|..|..+..|.||+.+..|..... ...+.+++|+||.+++.| ++++++++.+|||+++.|+|
T Consensus 67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i-~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~R 141 (218)
T COG0572 67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETI-KVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVR 141 (218)
T ss_pred hhcHHHHHHHHHHHHcCCcccccccchhcccccCCcc-ccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHH
Confidence 9999999999999999999999999999888886322 335788999999999999 59999999999999999999
Q ss_pred hhccC
Q 024225 265 FNREA 269 (270)
Q Consensus 265 ~~r~~ 269 (270)
+.||.
T Consensus 142 liRri 146 (218)
T COG0572 142 LIRRI 146 (218)
T ss_pred HHHHH
Confidence 99974
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=2.3e-20 Score=197.16 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=118.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--------------- 141 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--------------- 141 (270)
.++++||++.|++... ..+|+|+||+|++|+.+||+||||||||||+++|.|++. |+.|..
T Consensus 1165 ~I~f~nVsF~Y~~~~~-~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCCC-CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 4899999999975321 236799999999999999999999999999999999995 532210
Q ss_pred --------------------------CCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHH
Q 024225 142 --------------------------FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195 (270)
Q Consensus 142 --------------------------~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l 195 (270)
-......|+.|. |.+||.++.+.. ...++..+++..|...-.-.++.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~------~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYN------LKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCC------HHHHHhhccEeCCCCccccccHH
Confidence 000122357888 899998765421 12234444442111111112333
Q ss_pred HhhccC----------------------------CCc----CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhh
Q 024225 196 KNLRNQ----------------------------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (270)
Q Consensus 196 ~~l~~~----------------------------~~~----~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~ 243 (270)
+||.++ -+. ....+||||+||+++++++..+|++||+||++..||...
T Consensus 1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 333322 122 123689999999999999999999999999999999976
Q ss_pred HHHHHHhhc--------cceEEeccc
Q 024225 244 WKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 244 ~~~l~~~~~--------~~i~v~~~~ 261 (270)
.+.+.+.++ ..|.|+|..
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechH
Confidence 666665554 236777765
No 340
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=4.3e-20 Score=153.93 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=96.1
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~ 173 (270)
+.+++|+||++++|++++|+||||||||||+++|.+ + .|. +.+++.. +...
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~-------------~G~-v~~~~~~------~~~~-- 58 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------A-------------SGK-ARLISFL------PKFS-- 58 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------c-------------CCc-EEECCcc------cccc--
Confidence 347899999999999999999999999999998843 1 233 3333331 0000
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC--CcEEEEeCCCCCCChhhHHHHH
Q 024225 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVS 248 (270)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~--~~ilIld~~~~~lDe~~~~~l~ 248 (270)
.....+..+ .+.++.+.+.. +..+..+|+|++||++++.++..+ ++++|+|||+..+|....+.+.
T Consensus 59 ---~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 59 ---RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred ---cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 011122111 45667776642 456679999999999999999999 9999999999999998777777
Q ss_pred Hhhcc-------ceEEeccccc
Q 024225 249 SMFDE-------KCYATSFKET 263 (270)
Q Consensus 249 ~~~~~-------~i~v~~~~~~ 263 (270)
+.+.. .|+++|+.+.
T Consensus 130 ~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 130 EVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHhCCCEEEEEeCCHHH
Confidence 76653 2788888754
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.81 E-value=4.7e-20 Score=164.54 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=116.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
.+...+|||+||||||||||+++|.+++.+ |++ .....++.+||++.....+.... .....|++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~-----------~g~V~vi~~D~f~~~~~~l~~~g----~~~~~g~P 122 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSR-WPE-----------HRKVELITTDGFLHPNQVLKERN----LMKKKGFP 122 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCC-----------CCceEEEecccccccHHHHHHcC----CccccCCC
Confidence 356799999999999999999999999842 111 11345689999976532221111 22457889
Q ss_pred CCccHHHHHHHHHhhccCCC-cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCC------hhhHHHHHHhhccceE
Q 024225 184 WTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKCY 256 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lD------e~~~~~l~~~~~~~i~ 256 (270)
.+++...+.+.+..+..|.. +..|.||+...+++.....+..+++|||+||.+++.+ ++.|..+.+++|++||
T Consensus 123 ~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iy 202 (290)
T TIGR00554 123 ESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY 202 (290)
T ss_pred hhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEE
Confidence 99999999999999999875 8999999999998876655557899999999998854 4568899999999999
Q ss_pred Eeccccchhhc
Q 024225 257 ATSFKETYFNR 267 (270)
Q Consensus 257 v~~~~~~~~~r 267 (270)
|+++.+++..|
T Consensus 203 vDa~~d~~~~w 213 (290)
T TIGR00554 203 VDAEEDLLQTW 213 (290)
T ss_pred EECCHHHHHHH
Confidence 99999887643
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8e-20 Score=154.96 Aligned_cols=159 Identities=21% Similarity=0.163 Sum_probs=108.3
Q ss_pred cceEEeccchhhhhhh-hcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE
Q 024225 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~-~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~ 153 (270)
|.+++++||+...++. . +|+++|++|++||+.+|+||||||||||++.|+|.-+ ...+.|.
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~--------------Y~Vt~G~ 62 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--------------YEVTEGE 62 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC--------------ceEecce
Confidence 3578999999999874 3 6799999999999999999999999999999999742 1455666
Q ss_pred EeecCCCCccccc------------------cCcccChHHHH----HhcCCCC--CccHHHHHHHHHhhccCC---CcCC
Q 024225 154 VLPMDGFHLYLSQ------------------LDAMEDPKEAH----ARRGAPW--TFNPLLLLNCLKNLRNQG---SVYA 206 (270)
Q Consensus 154 ~i~~dg~~~~~~~------------------l~~~~~~~~~~----~~~g~~~--~~~~~~~~~~l~~l~~~~---~~~~ 206 (270)
|.+||.++..-. ++.....++++ ...+... ......+.+.++.+.+.. +.+.
T Consensus 63 -I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v 141 (251)
T COG0396 63 -ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV 141 (251)
T ss_pred -EEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc
Confidence 677776654310 11111112221 1111100 001122334455555543 1122
Q ss_pred -CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 207 -PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 207 -~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
--||||+++|.++...+.+.|++.|+|||-+++|-...+.+.+.++
T Consensus 142 N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 142 NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999766666655555
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=1.5e-20 Score=183.21 Aligned_cols=169 Identities=15% Similarity=0.082 Sum_probs=108.4
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe-ecCCC
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-PMDGF 160 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i-~~dg~ 160 (270)
++++.|+.. -.+|++++ .+++|+++||+||||||||||+|+|+|++. |+.|++... +..-.++ .++|.
T Consensus 78 ~~~~~yg~~---~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~----~~~~~~~~~~~G~ 146 (590)
T PRK13409 78 EPVHRYGVN---GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEE----PSWDEVLKRFRGT 146 (590)
T ss_pred CceEEecCC---ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCC----CcHHHHHHHhCCh
Confidence 488889752 12679999 899999999999999999999999999984 666654210 0000000 02222
Q ss_pred Cccccc-------cCc---cc----ChH----HHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhh
Q 024225 161 HLYLSQ-------LDA---ME----DPK----EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 161 ~~~~~~-------l~~---~~----~~~----~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~ 220 (270)
.+.... ... .+ .+. ........ ......+.++++.+.+.. +..+..||+||+||++++
T Consensus 147 ~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 147 ELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK--VDERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred HHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHh--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 211000 000 00 000 00000000 011233456677766653 566779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
.++..+++++|+|||+..||......+.+++.. .|+++|+.+.
T Consensus 225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~ 273 (590)
T PRK13409 225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV 273 (590)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999999999999877777766663 3778887643
No 344
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.6e-20 Score=172.09 Aligned_cols=168 Identities=11% Similarity=0.043 Sum_probs=112.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-------
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------- 149 (270)
++.+|+++.|++.+ .++.|+||++++|+.++|+|+||||||||+++|+|+++ |+.|++ +++.....
T Consensus 321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 55679999998753 27799999999999999999999999999999999994 566663 22211111
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcc--------CCCcCCC----CCCcccCCh
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDP 216 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~--------~~~~~~~----~~S~g~~~r 216 (270)
.....+.++++-... + .+.+..+ ..+...+.+.++++..+. |.+..+. .+|+||.||
T Consensus 395 k~i~~v~Q~p~lf~g---T-------ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 395 KQISWVSQNPYLFAG---T-------IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred hHeeeeCCCCccccc---c-------HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 112234444442221 1 1222222 111233445555554443 2233233 489999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
+++++++..+++++++|||+..+|.+.-+.+.+.+. ..++++|..
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl 515 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL 515 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcCh
Confidence 999999999999999999999999865555555444 337777766
No 345
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.80 E-value=1.4e-19 Score=156.22 Aligned_cols=140 Identities=24% Similarity=0.330 Sum_probs=109.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 188 (270)
+|||+|+||||||||++.|.+++.. +. ......++++|+++.....+. +. ......|++.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~---~~---------~~~~v~vi~~D~f~~~~~~~~--~~--~~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR---WP---------DHPNVELITTDGFLYPNKELI--ER--GLMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh---cC---------CCCcEEEEecCcccCcHHHHH--Hh--hhhhcCCCcccCCH
Confidence 5899999999999999999999841 00 112345689999975532211 11 11234677889999
Q ss_pred HHHHHHHHhhccC-CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh-hhHHHHHHhhccceEEeccccch
Q 024225 189 LLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 189 ~~~~~~l~~l~~~-~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe-~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
..+.++++.+..+ ..+..|.||+...++.........+++++|+||.+++.++ ..|..+.+++|.+|||+++.+++
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~ 142 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDI 142 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHH
Confidence 9999999999984 6889999999999888765544567899999999999884 57888999999999999999885
No 346
>PTZ00301 uridine kinase; Provisional
Probab=99.79 E-value=2.9e-19 Score=152.91 Aligned_cols=142 Identities=22% Similarity=0.328 Sum_probs=112.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 187 (270)
.+|||.|+||||||||++.|...+.+.+ .+....++.+|+|+..+..++..+ ....+++.|+++|
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~------------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHC------------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhc------------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence 6899999999999999999987663100 233455689999987654443221 1234677789999
Q ss_pred HHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267 (270)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r 267 (270)
.+.+.+.+..+..++.+..|.|++....+......+ .+.+++|+||.+++.++ ++.+++|.+|||+++.++++.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~~----~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTNA----ELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCCH----HHHHhCCEEEEEeCChhHHHHH
Confidence 999999999999999999999999888777544433 45699999999998784 8999999999999999999998
Q ss_pred cC
Q 024225 268 EA 269 (270)
Q Consensus 268 ~~ 269 (270)
|+
T Consensus 144 r~ 145 (210)
T PTZ00301 144 RA 145 (210)
T ss_pred HH
Confidence 75
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=8.7e-20 Score=194.44 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=112.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|+... -.+|+|+||+|++||.|||+|++|||||||+++|.|++. |++|++ +|+...
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 589999999996421 136799999999999999999999999999999999994 555542 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cCCCcC----CCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~~ 214 (270)
+.. ..+|++|.+... -+ .+.++........+.+.+.++... .|.+.. ...+|+||+
T Consensus 1312 R~~-IsiVpQdp~LF~---GT-------IreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1312 RKV-LGIIPQAPVLFS---GT-------VRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred Hhc-cEEECCCCcccc---cc-------HHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 011 122444443211 01 222222222233344444444332 222222 237999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
||+++++++..++++||+||++..+|...-+.+.+.++ ..|.|+|...
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1434 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChH
Confidence 99999999999999999999999999877666666665 2366666553
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=6.3e-20 Score=194.91 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=113.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~---- 148 (270)
.++++||++.|+... -.+|+|+||+|++||.|||+|+||||||||+++|.|++. |++|++ +|+... .
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 489999999996421 236799999999999999999999999999999999994 555552 232100 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCc----CCCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~~ 215 (270)
-....++++|.+... -+ .+.+.........+.+.+.++.... |.+. ....+|+||+|
T Consensus 1309 R~~i~iVpQdp~LF~---gT-------Ir~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS---GT-------VRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HhhcEEECCCCeeeC---cc-------HHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 011122444443211 01 2223332223334444444443322 2222 22379999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
|+++++++..++++||+||++..+|...-+.+.+.++ ..|.|+|..
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 9999999999999999999999999977666666665 236666665
No 349
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.79 E-value=1.9e-19 Score=156.59 Aligned_cols=144 Identities=33% Similarity=0.559 Sum_probs=126.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
-...-+|||.|+.|+||||+++.|.-++.+ |+. .| ...++++|||+.++..+... -.+.+.|+|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~----------~~-~v~lvpmDGFhy~n~~L~~~----glm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSR-WPE----------SP-KVDLVTMDGFHYPNAVLDER----GLMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhh-CCC----------CC-ceEEEeccccccCHhHhhhc----cccccCCCC
Confidence 456789999999999999999999999953 221 33 46779999999887655533 367789999
Q ss_pred CCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEecccc
Q 024225 184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKE 262 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~ 262 (270)
++||...+.+++..++.+. ++..|.|||-..+.++.+..+..++||||+||..+++|+..|-.+.+++|++||||++.+
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~ 222 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE 222 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence 9999999999999999765 599999999999999999999999999999999999999999999999999999999984
Q ss_pred c
Q 024225 263 T 263 (270)
Q Consensus 263 ~ 263 (270)
.
T Consensus 223 ~ 223 (283)
T COG1072 223 L 223 (283)
T ss_pred H
Confidence 3
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.7e-19 Score=151.57 Aligned_cols=184 Identities=17% Similarity=0.102 Sum_probs=115.7
Q ss_pred EEeccchhhhhhhh-cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C----
Q 024225 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~-~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p---- 149 (270)
+++.|+.+.|.... ..-.+|+++|++|++|++|.|+|.||||||||++.|+|.+. +++|.+ +++..+. |
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHHH
Confidence 45567777764322 22347799999999999999999999999999999999983 444442 2221000 0
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHH---hcCCCCCcc---HHHHHHHHHhhccCC----CcCCCCCCcccCChh
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFN---PLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV 217 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~---~~g~~~~~~---~~~~~~~l~~l~~~~----~~~~~~~S~g~~~rv 217 (270)
..+. |++|...-.-+.++..+|...... ++|+..... ...+.+-+..+.++. .-.+.-|||||+|-+
T Consensus 79 A~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 79 ANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred hhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 0111 233322222233455555433332 234422112 223344455555553 335568999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
.+..+...+++++++||-+..|||...+.+.++-+ ..+-|+|+.+.++
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al 213 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence 99999999999999999999999966655555444 2356677665443
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=143.59 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=121.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC-CCC------CCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQ------VKPP 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~-~~~------~~~p 149 (270)
++.++||+..-++.. .|.++||+|.+||||.|+||||||||||+.-+.|.+.--+...|+++ ++. ...-
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 356788888887755 67999999999999999999999999999999999964444466632 221 1122
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
..|. +.+|.... +++++.+|..+.... .+............++.+++.+ ...+..+||||+.|+++.+++...|
T Consensus 78 q~Gi-LFQD~lLF--phlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P 153 (213)
T COG4136 78 QIGI-LFQDALLF--PHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP 153 (213)
T ss_pred heee-eecccccc--cccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence 3443 66766533 335665544321100 0000011123345566766654 4567799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFK 261 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~ 261 (270)
+++++||||.-+|...+.+.++..- -.+.|+||.
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9999999999999766666555443 237888887
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=2.6e-19 Score=188.85 Aligned_cols=184 Identities=12% Similarity=0.086 Sum_probs=124.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---CCce
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---PDVA 152 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p~~g 152 (270)
+++++||++.|+.......+|+|+|+++++|+++||+||||||||||+++|+|++....+++|++ +++.... ....
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632222347799999999999999999999999999999999984222466774 4442111 1112
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccCC--CcCCC----CCCcccCChhhhhhh
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYAP----SFDHGVGDPVEDDIL 222 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~~--~~~~~----~~S~g~~~rv~~~~~ 222 (270)
.++.+++..+. .+++.++..+..... .+... ....+.++++.+++.. +..+. .+|+||+||+.++.+
T Consensus 839 ~yv~Q~~~~~~--~~Tv~E~L~~~a~l~-~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDLHLP--TSTVRESLRFSAYLR-QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeecccccCCC--CCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 23666554333 256666555433222 11111 1234567777776643 33332 699999999999999
Q ss_pred hccCCc-EEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 223 VGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 223 l~~~~~-ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+..+++ +|++|||+.+||......+.++++. .|.++|+.+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 999997 9999999999999777777666652 2566665543
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.78 E-value=4.1e-20 Score=147.19 Aligned_cols=118 Identities=23% Similarity=0.283 Sum_probs=85.4
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~ 176 (270)
|+|++|++++|++++|+|+||||||||+++|+|.+ .|..|. +.+++..+.. ......
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~----------------~~~~G~-i~~~~~~~~~------~~~~~~ 57 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL----------------PPDSGS-ILINGKDISD------IDIEEL 57 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS----------------HESEEE-EEETTEEGTT------SHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc----------------cccccc-cccccccccc------cccccc
Confidence 58999999999999999999999999999999998 567777 7777765433 111122
Q ss_pred HHhcCC-CCCc------------cHHHHHHHHHhhccCC--CcC----CCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225 177 HARRGA-PWTF------------NPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (270)
Q Consensus 177 ~~~~g~-~~~~------------~~~~~~~~l~~l~~~~--~~~----~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~ 237 (270)
....++ ++.. .......+++.+.... ... ...+|+|+++|+.++.++..+++++|+|||+.
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 233332 2211 1123445555555432 233 37999999999999999999999999999974
No 354
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=1.8e-19 Score=191.70 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=111.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.|+++||++.|++.. ..+|+|+||+|++||.|||+|++|||||||+++|.|++. |++|++ +|+...
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999997532 236799999999999999999999999999999999994 555542 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---------CCcC----CCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~~S~g~~ 214 (270)
+. ...+|++|.+... -+ .+.++........+.+.+.++..++. .+.. ...||+||+
T Consensus 1383 R~-~I~iVpQdp~LF~---gT-------IreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1383 RR-QFSMIPQDPVLFD---GT-------VRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred Hh-cceEECCCCcccc---cc-------HHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 01 1122444433211 11 12222222223344455555544332 2221 247999999
Q ss_pred ChhhhhhhhccC-CcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~-~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
||+++++++..+ +++||+||++..+|....+.+.+.++ ..|.|+|..
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl 1505 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL 1505 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccH
Confidence 999999999885 89999999999999977777766654 225566554
No 355
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.78 E-value=5e-19 Score=164.35 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=112.7
Q ss_pred ccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC
Q 024225 71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 150 (270)
Q Consensus 71 ~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~ 150 (270)
+|+..-.+.++++...=++.+ ..+++++||++.+||.+||+||||||||||.|+|.|.. +|.
T Consensus 328 LP~P~g~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w----------------~p~ 389 (580)
T COG4618 328 LPAPQGALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW----------------PPT 389 (580)
T ss_pred CCCCCceeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHccc----------------ccC
Confidence 344445689999998776644 33569999999999999999999999999999999997 677
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCC-CCCcc------------------HHHH---------HHHHHhhccCC
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFN------------------PLLL---------LNCLKNLRNQG 202 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~------------------~~~~---------~~~l~~l~~~~ 202 (270)
.|. |.+||.++.. ++ .+...+..|+ |++.. .+.+ .+++-.+-.|-
T Consensus 390 ~G~-VRLDga~l~q--Wd----~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY 462 (580)
T COG4618 390 SGS-VRLDGADLRQ--WD----REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY 462 (580)
T ss_pred CCc-EEecchhhhc--CC----HHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc
Confidence 787 8888876543 11 2234445555 43221 1111 11222222232
Q ss_pred CcCC----CCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 203 SVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 203 ~~~~----~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+..+ ..+|+||+||+++++++-.+|+++++|||-.-||+.--..+.+.+.
T Consensus 463 dT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred cCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 3322 2789999999999999999999999999999999876666666555
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=2.7e-19 Score=190.44 Aligned_cols=169 Identities=15% Similarity=0.049 Sum_probs=112.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|+.... .+|+|+||+|++||.|||+|++|||||||+++|.|++. |++|++ +|+...
T Consensus 1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 5899999999975321 37799999999999999999999999999999999993 445542 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~ 214 (270)
+. ...++++|.+.... + .+.+.........+.+.+.++.... |.+.. ...+|+||+
T Consensus 1359 R~-~i~iVpQdp~LF~g---T-------Ir~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1359 RF-KITIIPQDPVLFSG---S-------LRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred Hh-cCeEECCCCcccCc---c-------HHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 01 11124444332111 1 2222221112333444444443332 22222 246999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
||+++++++..++++||+||++..+|...-+.+.+.++ ..|.|+|..
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999977777766665 236666655
No 357
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4.5e-19 Score=163.88 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=103.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
-++++||++.|+... .+|+||||++.+|+.++|+||||+||||++|+|.++. .-.+|. |.
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff----------------dv~sGs-I~ 596 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF----------------DVNSGS-IT 596 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh----------------hccCce-EE
Confidence 589999999998643 2679999999999999999999999999999999998 334444 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-C-------------------CCccHHHH-----HHHHHhhcc-CC--C----c
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-P-------------------WTFNPLLL-----LNCLKNLRN-QG--S----V 204 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~-------------------~~~~~~~~-----~~~l~~l~~-~~--~----~ 204 (270)
+||+++.+... ...+..+|+ | .+-+.+-. ..+-+.+.. .+ . -
T Consensus 597 iDgqdIrnvt~------~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQ------SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHH------HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 55554432110 112223333 2 11111111 111222221 11 1 1
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+.-.+|||++||+++++.+...|.++++||.+..||-+.-+.+...+.
T Consensus 671 RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~ 718 (790)
T KOG0056|consen 671 RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA 718 (790)
T ss_pred cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence 223789999999999999999999999999999999877777766655
No 358
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.75 E-value=1.4e-18 Score=158.30 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=100.0
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCC
Q 024225 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (270)
Q Consensus 112 L~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~ 185 (270)
|+||||||||||+++|+|++. |++|++ +++... .+ ....++.++... + +.+++.++..+.....+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l-~-~~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL-F-PHMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccc-c-CCCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999986 888884 443211 11 112235554322 1 235555555443322232211
Q ss_pred ccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cce
Q 024225 186 FNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKC 255 (270)
Q Consensus 186 ~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i 255 (270)
.....+.++++.+++.. +.++..+|+||+||+++++++..+++++|+|||+..+|...++.+.+.+. ..|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 11234566777776653 55677999999999999999999999999999999999987777776664 237
Q ss_pred EEeccccc
Q 024225 256 YATSFKET 263 (270)
Q Consensus 256 ~v~~~~~~ 263 (270)
+++|+.++
T Consensus 156 ivTHd~~e 163 (325)
T TIGR01187 156 FVTHDQEE 163 (325)
T ss_pred EEeCCHHH
Confidence 88888764
No 359
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.75 E-value=5.2e-18 Score=146.97 Aligned_cols=168 Identities=13% Similarity=0.027 Sum_probs=96.0
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHH-HHHHHHhc-----ccCCCCcccCCCCCCCCC-------ceEEeecCCC
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRIN-----KIWPQKASSFDSQVKPPD-------VATVLPMDGF 160 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLl-k~L~gll~-----~~~~~~G~~~~~~~~~p~-------~g~~i~~dg~ 160 (270)
+.+|+++||++++||++||+||||||||||+ ..|...-+ .+.+..+.. .+....|. ...+...++.
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQF-LGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhh-hcccCccccccccCCCceEEecCCC
Confidence 3478999999999999999999999999996 33321100 000000000 00000111 1111222222
Q ss_pred CccccccCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC--cEEEEeC
Q 024225 161 HLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDG 234 (270)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~--~ilIld~ 234 (270)
....+...... .......+ ............+.++.+.+.. +.++..+|+|++||+.++.++..++ +++|+||
T Consensus 87 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE 165 (226)
T cd03270 87 TSRNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE 165 (226)
T ss_pred CCCCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 11111111000 00000000 0111111222345677776643 4567799999999999999998886 6999999
Q ss_pred CCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 235 NYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 235 ~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
|+..+|...++.+.+++. ..|+++|+.+.
T Consensus 166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~ 201 (226)
T cd03270 166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT 201 (226)
T ss_pred CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 999999988888777765 23788888754
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.74 E-value=2.7e-18 Score=182.86 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=112.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i 155 (270)
.++++|+++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++ . ..++
T Consensus 636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~-i~yv 704 (1522)
T TIGR00957 636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----S-VAYV 704 (1522)
T ss_pred cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----E-EEEE
Confidence 589999999997522 226799999999999999999999999999999999984 566653 221 1 1224
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh------hc---cCCC----cCCCCCCcccCChhhhhhh
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LR---NQGS----VYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~------l~---~~~~----~~~~~~S~g~~~rv~~~~~ 222 (270)
.++... .. .+.. .++-+...++.+...++++. +. .+.+ .....+||||+||++++++
T Consensus 705 ~Q~~~l-~~--~Ti~-------eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 705 PQQAWI-QN--DSLR-------ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred cCCccc-cC--CcHH-------HHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 444321 11 1222 22222112233333333322 21 2221 2345899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEecccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKE 262 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~ 262 (270)
+..+++++++|||+..+|....+++.+.+. ..|.++|+.+
T Consensus 775 l~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~ 823 (1522)
T TIGR00957 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS 823 (1522)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh
Confidence 999999999999999999988877766552 3478887763
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=3.9e-18 Score=181.15 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=115.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-CC--C----
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-VK--P---- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-~~--~---- 148 (270)
.++++||++.|+... ..+|+|+||+|++||.|||+|+||||||||+++|.|++ +.+|++ +++. .. .
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 589999999997522 23679999999999999999999999999999999998 356663 3331 00 0
Q ss_pred CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCC
Q 024225 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (270)
Q Consensus 149 p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~ 215 (270)
-....+|++|.+.... +. +.++.....+..+.+.++++..++ |.+.. ...||+||+|
T Consensus 1291 R~~is~IpQdp~LF~G---TI-------R~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG---TF-------RKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HhceEEEeCCCccCcc---CH-------HHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 0122335665543221 22 222222222344555555555443 22222 2269999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
|+.+++++..+++|||+||++..+|...-+.+.+.+. ..|.|+|..
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9999999999999999999999999877666666665 226666654
No 362
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=4.9e-18 Score=172.58 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=130.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
..+.+++++|.|+.... |++++++.|++||+.|+.|+|||||||++++|.|..+ |++|+. ..++..
T Consensus 563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence 56889999999987543 7899999999999999999999999999999999985 777772 222211
Q ss_pred --CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 148 --~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
....|. .++.+- ....++..|..+...+..|+++..-...+...++.+++.. +...+.||+|+++|+..+.++
T Consensus 637 ~~~~~iGy-CPQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 637 QVRKQLGY-CPQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhhccc-CCchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 111232 333322 2233666777777777788765444445667777777653 566789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChh----hHHHHHHhhcc--ceEEeccc
Q 024225 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KCYATSFK 261 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~----~~~~l~~~~~~--~i~v~~~~ 261 (270)
...|+++++|||..++|+. .|.-+.++.+. .+-+|.+.
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs 757 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS 757 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 9999999999999999984 45555555542 34444444
No 363
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.73 E-value=8.9e-18 Score=165.07 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=105.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-----CCceEEeecCCCCccccccCc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP-----PDVATVLPMDGFHLYLSQLDA 169 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~-----p~~g~~i~~dg~~~~~~~l~~ 169 (270)
+|+|+|+++++||+++|+||||||||||+++|+|........+|++ +++.... ...+ ++.+++..... +++
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~~~~--lTV 116 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLFIPT--LTV 116 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eeccccccCcc--CcH
Confidence 6799999999999999999999999999999999874111125663 3332111 1223 36666544332 566
Q ss_pred ccChHHHHHhcCCCC----CccHHHHHHHHHhhccCC--CcCC------CCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225 170 MEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG--SVYA------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (270)
Q Consensus 170 ~~~~~~~~~~~g~~~----~~~~~~~~~~l~~l~~~~--~~~~------~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~ 237 (270)
.++..+... ...+. ......+.++++.+++.. +..+ ..+|+||+||+.++.++..+|+++++|||+.
T Consensus 117 ~e~l~f~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 117 REHLMFQAH-LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 665554332 22222 112234567777776642 3333 3599999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhc
Q 024225 238 FLDGGVWKDVSSMFD 252 (270)
Q Consensus 238 ~lDe~~~~~l~~~~~ 252 (270)
+||......+.+.++
T Consensus 196 gLD~~~~~~l~~~L~ 210 (617)
T TIGR00955 196 GLDSFMAYSVVQVLK 210 (617)
T ss_pred chhHHHHHHHHHHHH
Confidence 999977777666665
No 364
>PRK05439 pantothenate kinase; Provisional
Probab=99.73 E-value=5.9e-18 Score=152.16 Aligned_cols=144 Identities=26% Similarity=0.352 Sum_probs=114.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~ 184 (270)
...-+|||.|++||||||+++.|..++.+. + ......++.+|||+..+..+.. .....+.|+|+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~-~-----------~~~~v~vi~~DdFy~~~~~l~~----~~l~~~kg~Pe 147 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW-P-----------EHPKVELVTTDGFLYPNAVLEE----RGLMKRKGFPE 147 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhh-C-----------CCCceEEEeccccccCHHHHhh----hhccccCCCcc
Confidence 456799999999999999999999988410 0 1223556999999876543321 11334578899
Q ss_pred CccHHHHHHHHHhhccCCC-cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh--hHHHHHHhhccceEEeccc
Q 024225 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKCYATSFK 261 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~--~~~~l~~~~~~~i~v~~~~ 261 (270)
++|...+.++++.++.|.. +..|.||+....++........+++|||+||.+++.++. .|..+.+++|++|||+++.
T Consensus 148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~ 227 (311)
T PRK05439 148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE 227 (311)
T ss_pred cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence 9999999999999999986 899999999998886555555688999999999886554 6889999999999999999
Q ss_pred cch
Q 024225 262 ETY 264 (270)
Q Consensus 262 ~~~ 264 (270)
++.
T Consensus 228 ~~~ 230 (311)
T PRK05439 228 DLI 230 (311)
T ss_pred HHH
Confidence 873
No 365
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.73 E-value=9.4e-18 Score=156.77 Aligned_cols=171 Identities=21% Similarity=0.166 Sum_probs=122.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~ 153 (270)
.|++.+.|+++.|++.. ..+.+++|-|+.+..|+++||||+|||||+|++.|.+. |..|.+ ...+..-| .
T Consensus 387 ~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~---~ 457 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLP---R 457 (614)
T ss_pred CCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccch---h
Confidence 47899999999998743 36799999999999999999999999999999999994 555542 12221111 0
Q ss_pred EeecCCCCccccccCccc-ChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCCcE
Q 024225 154 VLPMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~~i 229 (270)
+. ++... .++... -.++....+ +.....+.+..++..+++.. .+....+|.|++.|+..+..+...|.+
T Consensus 458 -y~---Qh~~e-~ldl~~s~le~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l 530 (614)
T KOG0927|consen 458 -YN---QHLAE-QLDLDKSSLEFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL 530 (614)
T ss_pred -hh---hhhHh-hcCcchhHHHHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE
Confidence 00 00000 011100 111222221 22234556677788887764 456679999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHhhccc----eEEeccc
Q 024225 230 VIVDGNYLFLDGGVWKDVSSMFDEK----CYATSFK 261 (270)
Q Consensus 230 lIld~~~~~lDe~~~~~l~~~~~~~----i~v~~~~ 261 (270)
|++|||+..+|-+....+.+.+++. |+|+||.
T Consensus 531 LlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDf 566 (614)
T KOG0927|consen 531 LLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDF 566 (614)
T ss_pred EEecCCCcCCCchhHHHHHHHHhccCCceeeeechh
Confidence 9999999999999999999999965 5677765
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=6.7e-18 Score=179.58 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=115.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++|+++.|+...+ ..+|+|+||++++|+.++|+||+|||||||+++|.|.+. |++|.+..- +.. ..++.
T Consensus 614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~~---~~~-Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVVI---RGS-VAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEEe---cCc-EEEEc
Confidence 5899999999975211 225799999999999999999999999999999999995 666643210 112 23355
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCChhhhhhhh
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDILV 223 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~rv~~~~~l 223 (270)
++..-.. -+.. .++-+...++.+.+.++++...+ |.+.. .-.+||||+||+++++++
T Consensus 686 Q~p~Lf~---gTIr-------eNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVR-------ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHH-------HHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 5554322 1222 22222223455566655554332 22222 236999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHH-hhc------cceEEeccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSS-MFD------EKCYATSFK 261 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~-~~~------~~i~v~~~~ 261 (270)
..+++++|+|||+..+|....+++.+ .++ ..|.|+|..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~ 800 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence 99999999999999999876665533 222 457888765
No 367
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=2.3e-17 Score=176.11 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=115.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccCCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~-G~~~~~~~~~p~~g~~i 155 (270)
.++++|+++.|+.... ..+|+|+||++++|++++|+||+|||||||+++|.|.+. +++ |++.- ... ..++
T Consensus 614 ~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~-Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGT-VAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCe-EEEE
Confidence 5899999999975211 226799999999999999999999999999999999994 666 55321 111 2235
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCCcC----CCCCCcccCChhhhhhh
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDIL 222 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~~S~g~~~rv~~~~~ 222 (270)
.++.+-.. -+. +.++-+...++.+.+.++++...+ |.+.. ...+||||+||++++++
T Consensus 685 ~Q~p~Lfn---gTI-------reNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATV-------RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCH-------HHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 55554322 122 223323223455666665554332 32222 33699999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHH-Hhhc------cceEEeccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD------EKCYATSFK 261 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~-~~~~------~~i~v~~~~ 261 (270)
+..+++++|+|+++..+|....+++. ..+. ..|.|+|..
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l 800 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence 99999999999999999987666553 2222 447888775
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.71 E-value=1.6e-17 Score=175.50 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=121.5
Q ss_pred eEEeccchhhhhhhh---------cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC
Q 024225 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV 146 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~---------~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~ 146 (270)
.+..+||++..+... ....+|+|+|+++++|++++|+||||||||||+++|+|+... -+.+|++ +++..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 477888887764211 123478999999999999999999999999999999998630 1246774 34322
Q ss_pred CCC----CceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc----HHHHHHHHHhhccCC--CcC-----CCCCCc
Q 024225 147 KPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN----PLLLLNCLKNLRNQG--SVY-----APSFDH 211 (270)
Q Consensus 147 ~~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~----~~~~~~~l~~l~~~~--~~~-----~~~~S~ 211 (270)
... ....++.+++.+.. .+++.++..+... ...+.... ...+.++++.+++.. +.. +..+|+
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~-lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAF-LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CChHHhhhheEEEccccccCC--CCcHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 111 11233666655433 3666666554322 12222111 223566777776642 222 247999
Q ss_pred ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEecccc
Q 024225 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKE 262 (270)
Q Consensus 212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~ 262 (270)
||+||+.++.++..+|++|++|||+.+||......+.+.++. .|.++|+.+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 999999999999999999999999999999777777666652 255555544
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.71 E-value=1.2e-17 Score=177.62 Aligned_cols=148 Identities=13% Similarity=0.163 Sum_probs=99.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccChH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~ 174 (270)
+|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++ . ..++.++.... . .+..++..
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~-iayv~Q~~~l~-~--~Ti~eNI~ 508 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----R-ISFSPQTSWIM-P--GTIKDNII 508 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----E-EEEEeCCCccC-C--ccHHHHHH
Confidence 6799999999999999999999999999999999994 666653 222 1 12244443221 1 13322221
Q ss_pred HHHHhcCCCCCccHHHHHH---------HHHhhccCCC----cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225 175 EAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe 241 (270)
+|.. ++.....+ .++.+..+.. .....+|+||+||+++++++..+++++|+|+|+..+|.
T Consensus 509 -----~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 -----FGLS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred -----hccc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 2221 22222222 2222222322 13458999999999999999999999999999999999
Q ss_pred hhHHHHHHh-hc------cceEEecccc
Q 024225 242 GVWKDVSSM-FD------EKCYATSFKE 262 (270)
Q Consensus 242 ~~~~~l~~~-~~------~~i~v~~~~~ 262 (270)
...+++.+. +. ..|.++|+.+
T Consensus 582 ~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 582 VTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 888888763 22 3477777753
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.69 E-value=8.7e-17 Score=169.88 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=108.2
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---Cccc-CCCCCC----CCCceEEeecCCCCcccc
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASS-FDSQVK----PPDVATVLPMDGFHLYLS 165 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~---~G~~-~~~~~~----~p~~g~~i~~dg~~~~~~ 165 (270)
..+|+|+|+.+++|++++|+||||||||||+|+|+|++. ++ +|++ +++... ......++.+++.+...
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~- 253 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV- 253 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCc-
Confidence 447899999999999999999999999999999999985 66 7874 444311 11223346666554433
Q ss_pred ccCcccChHHHHHhcCCCCC-------------------ccH---------------HHHHHHHHhhccCC-------Cc
Q 024225 166 QLDAMEDPKEAHARRGAPWT-------------------FNP---------------LLLLNCLKNLRNQG-------SV 204 (270)
Q Consensus 166 ~l~~~~~~~~~~~~~g~~~~-------------------~~~---------------~~~~~~l~~l~~~~-------~~ 204 (270)
+++.++..+.....+.... .+. .....+++.+++.. +.
T Consensus 254 -lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 254 -MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred -CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 6777766654433321100 000 01234566666642 33
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
.+..+|+||+||+.++.++..+++++++|||+.+||.....++.+.++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr 380 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976666666554
No 371
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.69 E-value=7.5e-17 Score=137.78 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=103.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
-++|+++||+||||||||||++.|+++++ +....++.+|+++......... ......++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~---~~~~~~~~~~ 63 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG----------------KLEIVIISQDNYYKDQSHLEMA---ERKKTNFDHP 63 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc----------------ccCCeEecccccccChhhCCHH---HhcCCCCCCc
Confidence 46899999999999999999999999983 2234458999986443221111 1111122234
Q ss_pred CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET 263 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~ 263 (270)
..++...+.+.++.+..+..+..|.|++....+..... .....+++|+||.++++++ .+.+.++..|||+++.++
T Consensus 64 ~~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~~~-~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~ 138 (207)
T TIGR00235 64 DAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETV-HIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDI 138 (207)
T ss_pred cHhHHHHHHHHHHHHHCCCCEecccceeecCCCCCceE-EeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhH
Confidence 55666677888888888888999999887666543222 2346789999999998873 678899999999999999
Q ss_pred hhhcc
Q 024225 264 YFNRE 268 (270)
Q Consensus 264 ~~~r~ 268 (270)
++.|+
T Consensus 139 ~l~R~ 143 (207)
T TIGR00235 139 RLIRR 143 (207)
T ss_pred HHHHH
Confidence 98875
No 372
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.9e-17 Score=147.73 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=111.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.+.++++++.|+... ..|.++||+++.|+.++++||+|+||||++++|.+++ .+++|. |.
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy----------------D~~sG~-I~ 321 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY----------------DVNSGS-IT 321 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh----------------CCcCce-EE
Confidence 477899999998733 2569999999999999999999999999999999999 778887 88
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccC----------------------------CCc---
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----------------------------GSV--- 204 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~----------------------------~~~--- 204 (270)
+||+++... .....++.+|+ |++.- -.-.++..|++.+ -+.
T Consensus 322 id~qdir~v------tq~slR~aIg~VPQDtv-LFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 322 IDGQDIRDV------TQQSLRRAIGIVPQDTV-LFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred EcchhHHHh------HHHHHHHHhCcCcccce-ehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 899877541 12234555665 33211 1111222233321 111
Q ss_pred -CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 205 -YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 205 -~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..-.+|||++||+++++.+..+|+++++||.+..||-..-+++...++
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 122679999999999999999999999999999999877777777776
No 373
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=1.1e-16 Score=156.72 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=120.6
Q ss_pred EEeccchhhhhhhh-cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----CCC
Q 024225 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----PPD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~-~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-----~p~ 150 (270)
+..++++....... ....+|++||.++++||+.||+||||||||||+++|+|........+|++ .++... +..
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 44445544443321 11336799999999999999999999999999999999985333456774 444221 223
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCC----ccHHHHHHHHHhhccC--CCcCC-----CCCCcccCChhhh
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVED 219 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~~~~~~l~~l~~~--~~~~~-----~~~S~g~~~rv~~ 219 (270)
.|. +.+|+..+.. +++.|...+.. ....+.+ .....+.++++.+++. .+..+ ...|||+++|+.+
T Consensus 106 s~y-V~QdD~l~~~--LTV~EtL~f~A-~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 106 SGY-VQQDDVLLPT--LTVRETLRFSA-LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred eEE-Eccccccccc--ccHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 444 8888876554 77766554433 3344442 3334566777777765 23333 4689999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
+..+..+|.++++|||+.+||.....++.++++
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk 214 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLK 214 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence 999999999999999999999977767666666
No 374
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.67 E-value=1.5e-16 Score=138.02 Aligned_cols=145 Identities=42% Similarity=0.666 Sum_probs=111.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCce--EE-eecCCCCccccccCcccChHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA--TV-LPMDGFHLYLSQLDAMEDPKEAHARR 180 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g--~~-i~~dg~~~~~~~l~~~~~~~~~~~~~ 180 (270)
-.+..++||+||||||||||++.|+++++ +..| .+ +.+|+++.....+... ......
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~----------------~~~g~~~v~i~~D~~~~~~~~~~~~----g~~~~~ 89 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ----------------QDGELPAIQVPMDGFHLDNAVLDAH----GLRPRK 89 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh----------------hccCCceEEEecccccCCHHHHHhc----cccccc
Confidence 45689999999999999999999999994 3323 24 7888886543211110 011124
Q ss_pred CCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225 181 GAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259 (270)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~ 259 (270)
+.+..++...+.+++..+..+. ....|.|+....+.......+....+++|+||.+++.+++.|..+.+.+|..|||++
T Consensus 90 ~~~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~ 169 (229)
T PRK09270 90 GAPETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDA 169 (229)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEEC
Confidence 5577788888889999998886 788899999887766554444446789999999999998899999999999999999
Q ss_pred cccchhhcc
Q 024225 260 FKETYFNRE 268 (270)
Q Consensus 260 ~~~~~~~r~ 268 (270)
+.++++.|.
T Consensus 170 ~~~~~~~R~ 178 (229)
T PRK09270 170 PAEVLRERL 178 (229)
T ss_pred CHHHHHHHH
Confidence 999887763
No 375
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.67 E-value=1.3e-16 Score=168.53 Aligned_cols=157 Identities=12% Similarity=0.003 Sum_probs=105.9
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCccc-CCCCCC------CCCceEEeecCCCCcccc
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASS-FDSQVK------PPDVATVLPMDGFHLYLS 165 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~-~~~~~G~~-~~~~~~------~p~~g~~i~~dg~~~~~~ 165 (270)
..+|+|+|+++++||+++|+||||||||||+|+|+|++.. ..+++|++ +++... ......++.+++.+...
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~- 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH- 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC-
Confidence 3477999999999999999999999999999999998621 12577884 444211 01112335666544333
Q ss_pred ccCcccChHHHHHhcCC---CCCccH----HH-HHHHHHhhccCC--C-----cCCCCCCcccCChhhhhhhhccCCcEE
Q 024225 166 QLDAMEDPKEAHARRGA---PWTFNP----LL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (270)
Q Consensus 166 ~l~~~~~~~~~~~~~g~---~~~~~~----~~-~~~~l~~l~~~~--~-----~~~~~~S~g~~~rv~~~~~l~~~~~il 230 (270)
+++.++..+..+...- ...... .. ...+++.+++.. + ..+..+||||+||+.++.++..+++++
T Consensus 153 -lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 -LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred -CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 6776666554332210 001111 11 234566666643 1 234679999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHhhc
Q 024225 231 IVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 231 Ild~~~~~lDe~~~~~l~~~~~ 252 (270)
++|||+.+||.....++.+.++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~ 253 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALK 253 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHH
Confidence 9999999999976666555554
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.8e-16 Score=142.40 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=107.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
..++++|+.+.|.... .-+-.||++|++||+|-|+|.||||||||+++|.|++ .|++|. |
T Consensus 321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~----------------~PqsG~-I 380 (546)
T COG4615 321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY----------------QPQSGE-I 380 (546)
T ss_pred cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc----------------CCCCCc-e
Confidence 3589999999998742 2357899999999999999999999999999999999 778888 8
Q ss_pred ecCCCCccccccCcccChHHHHHhcCC-------------CCC-ccHHHHHHHHHhhccC-------CCcCCCCCCcccC
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-------------PWT-FNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVG 214 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~-------------~~~-~~~~~~~~~l~~l~~~-------~~~~~~~~S~g~~ 214 (270)
..||..+... ..+..+..+.. +++ .....+...++.+.+. .+...-.+|-||+
T Consensus 381 ~ldg~pV~~e------~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQk 454 (546)
T COG4615 381 LLDGKPVSAE------QLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQK 454 (546)
T ss_pred eECCccCCCC------CHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchH
Confidence 8888765432 22223222111 111 2233344555555543 3344457899999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~ 246 (270)
+|++...++..+-+|+++||.-.--||.+++.
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~ 486 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRRE 486 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHH
Confidence 99999999999999999999999999965543
No 377
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.67 E-value=9.6e-18 Score=141.90 Aligned_cols=144 Identities=30% Similarity=0.468 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 187 (270)
+|||.||+|||||||++.|...+++ .|. .+ .....+.+|+++........ .........++.+.+++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~----~~~-------~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d 68 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK----RGI-------PAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFD 68 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT----CTT-------TCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc----cCc-------CccceeEEEeecccccccchhhH-hhccccccCCCCccccC
Confidence 6999999999999999999999941 110 11 01334778887532210000 00000011234477889
Q ss_pred HHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267 (270)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r 267 (270)
.+.+.+.+..|..++.+..|.|++....+.... .+..++++||+||.++++|+ .+++++|++|||+++.++++.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~~~-~~~~~~~ivIvEG~~~l~~~----~l~~l~D~~ifld~~~~~~l~R 143 (194)
T PF00485_consen 69 FDLLKEDLKALKNGGSIEIPIYDFSTGDRDPWI-IIISPSDIVIVEGIYALYDE----ELRDLFDLKIFLDADEDLRLER 143 (194)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEETTTTEEEEEE-EEEES-SEEEEEETTTTSSH----CHGGG-SEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccccccceeee-eecCCCCEEEEcccceeeee----eecccceeEEEecccHHHHHHH
Confidence 999999999999999999999999888777622 23457899999999999995 5999999999999999999988
Q ss_pred cC
Q 024225 268 EA 269 (270)
Q Consensus 268 ~~ 269 (270)
++
T Consensus 144 ri 145 (194)
T PF00485_consen 144 RI 145 (194)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 378
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.67 E-value=6.7e-17 Score=137.19 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=91.8
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc---------c-CCCCCC--CC--CceEEeecCCCCcc
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---------S-FDSQVK--PP--DVATVLPMDGFHLY 163 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~---------~-~~~~~~--~p--~~g~~i~~dg~~~~ 163 (270)
+++++++++| +++|+||||||||||+++|++++. +..|. + +.+... .+ ....++.++....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999984 33221 1 111110 00 0111122222110
Q ss_pred ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCC
Q 024225 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL 239 (270)
Q Consensus 164 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~l 239 (270)
++.. ......++++. ....+..+..+|+|++||++++.++. .+++++++|||+..+
T Consensus 89 ----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 ----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 1100 11234445554 22235566799999999999998875 356899999999999
Q ss_pred ChhhHHHHHHhhcc------ceEEeccccc
Q 024225 240 DGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 240 De~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+...+.+.+++.. .|+++|+.+.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~ 178 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGT 178 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence 99877777776663 3677777653
No 379
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.65 E-value=5.9e-16 Score=131.15 Aligned_cols=136 Identities=24% Similarity=0.427 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 188 (270)
+|||+||||||||||++.|.+++. .+ ...++.+|+++... ...+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~-~~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NP-KVVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---------------CC-CeEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999972 22 34568999886432 221111111223445666777
Q ss_pred HHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
..+.+.+..+..+.....|.|++....+..... ....++++|+|+++++.++ .+.+.++..|||+++.++++.|+
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~R~ 136 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLIRR 136 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce-ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHHHH
Confidence 777888888988887778877766655543333 3456899999999999984 66778899999999999988875
No 380
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.65 E-value=8e-16 Score=131.46 Aligned_cols=140 Identities=23% Similarity=0.363 Sum_probs=104.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~ 184 (270)
.++.+|||.|+||||||||++.|.+.+. .....++.+|+++.....++.. ......++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~---~~~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFE---ERVKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHH---HhcccCccCcc
Confidence 4789999999999999999999999982 2334558999986544222111 11122344566
Q ss_pred CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
.++...+.+.++.+..+..+..|.|+.....+...... ....+++|+|+++++.++ .+.+.+|..|||+++.+++
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~~~-~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~ 139 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIR-VEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR 139 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCeEE-eCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence 77888888999999888888889888776665443222 245679999999998763 7778899999999999999
Q ss_pred hhcc
Q 024225 265 FNRE 268 (270)
Q Consensus 265 ~~r~ 268 (270)
+.|+
T Consensus 140 ~~R~ 143 (209)
T PRK05480 140 LIRR 143 (209)
T ss_pred HHHH
Confidence 8875
No 381
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.65 E-value=3.3e-16 Score=149.71 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=103.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCC
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~ 184 (270)
...-+|||+||||||||||++.|++++ |..+. |.+|||+.... .....+..+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL-----------------p~vgv-IsmDdy~~~~~---------~i~~nfD~P~ 115 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM-----------------PSIAV-ISMDNYNDSSR---------IIDGNFDDPR 115 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC-----------------CCcEE-EEEcceecchh---------hhCccCCChh
Confidence 345799999999999999999999986 23454 99999853210 0111223355
Q ss_pred CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
.++...+.+.++.|..+..+..|.|++....+...........+++|+||.+++.+ ++++++|.+|||+++.+.+
T Consensus 116 a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDir 190 (656)
T PLN02318 116 LTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFD 190 (656)
T ss_pred hcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHH
Confidence 56667777888999999999999999998877654333456789999999999874 8999999999999999988
Q ss_pred hhccC
Q 024225 265 FNREA 269 (270)
Q Consensus 265 ~~r~~ 269 (270)
+.||+
T Consensus 191 L~RRI 195 (656)
T PLN02318 191 LVKRV 195 (656)
T ss_pred HHHHH
Confidence 88763
No 382
>PTZ00243 ABC transporter; Provisional
Probab=99.64 E-value=3.8e-16 Score=166.44 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=99.2
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+|+|+||++++|++++|+||||||||||+++|+|++. |++|++.-. ...+ ++.++... .. .+..++...
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~----~~i~-yv~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE----RSIA-YVPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC----CeEE-EEeCCCcc-CC--CcHHHHHHc
Confidence 6799999999999999999999999999999999985 667764321 1122 35555432 11 233222211
Q ss_pred HHHhcCCCCCccHHHHH---------HHHHhhccCC----CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh
Q 024225 176 AHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~---------~~l~~l~~~~----~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~ 242 (270)
+ ...+...+. +.++.+..+. ......+|+||+||+++++++..+++++|+|||+..+|..
T Consensus 744 -----~--~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 -----F--DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred -----C--ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1 111221222 2233332221 2345689999999999999999999999999999999987
Q ss_pred hHHHHHHh-h----c--cceEEecccc
Q 024225 243 VWKDVSSM-F----D--EKCYATSFKE 262 (270)
Q Consensus 243 ~~~~l~~~-~----~--~~i~v~~~~~ 262 (270)
..+.+.+. + . ..|.++|+.+
T Consensus 817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 817 VGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 66655432 1 1 3477887764
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.63 E-value=8.7e-16 Score=128.47 Aligned_cols=136 Identities=22% Similarity=0.290 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 188 (270)
+|+|.|++|||||||++.|...+.. ......++.+|+|+.+. ... ......+..+..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~--------------~~~~~~~i~~Ddf~~~~--~~~----~~~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV--------------NGIGPVVISLDDYYVPR--KTP----RDEDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH--------------cCCCEEEEehhhcccCc--ccc----cccCCCCCCCccccH
Confidence 5899999999999999999999831 12234569999998654 010 000111222333577
Q ss_pred HHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc-hhhc
Q 024225 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET-YFNR 267 (270)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~-~~~r 267 (270)
+.+.+.+..+..+..+..|.|++....+.........+.++||+||.+++.+ .++++++.+|||+++.+. ++.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 7888888889988889999999988877654233445788999999999875 788999999999999998 8877
Q ss_pred cC
Q 024225 268 EA 269 (270)
Q Consensus 268 ~~ 269 (270)
|+
T Consensus 136 ri 137 (179)
T cd02028 136 RV 137 (179)
T ss_pred HH
Confidence 64
No 384
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.62 E-value=1.2e-15 Score=128.16 Aligned_cols=136 Identities=24% Similarity=0.296 Sum_probs=102.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 188 (270)
+|||.|++|||||||++.|+..+. . ..++.+|+++....++..... ...+++.+..+|.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----------------~--~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----------------N--CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----------------C--CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999872 1 345999999877544332111 2235666888999
Q ss_pred HHHHHHHHhhccCCCcCCCCCCcccCChhh-------------hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccce
Q 024225 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKC 255 (270)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~-------------~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i 255 (270)
..+.+.+..+..+.....+.++.+...... .......+.+++|+||.+++.++ .+.+++|.+|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999999998876555555555433211 11224456789999999999985 7889999999
Q ss_pred EEeccccchhhccC
Q 024225 256 YATSFKETYFNREA 269 (270)
Q Consensus 256 ~v~~~~~~~~~r~~ 269 (270)
||+++.++++.|+.
T Consensus 136 fvd~~~d~~~~Rr~ 149 (187)
T cd02024 136 FLRVPYETCKRRRE 149 (187)
T ss_pred EecCCHHHHHHHHH
Confidence 99999999999874
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.62 E-value=2e-15 Score=144.88 Aligned_cols=164 Identities=17% Similarity=0.141 Sum_probs=120.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccCCCCCCCC-Cc-e
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP-DV-A 152 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~-~G~~~~~~~~~p-~~-g 152 (270)
..+.++||+..-++.. ..+++.+|++++|+-+-|.||||||||||+|.|+|+ ||. +|.+ ..| +. -
T Consensus 391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL----WP~g~G~I-----~~P~~~~~ 458 (604)
T COG4178 391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-----SMPADSAL 458 (604)
T ss_pred ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc----CccCCCce-----ecCCCCce
Confidence 5689999999998744 256999999999999999999999999999999998 565 3321 112 11 1
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCC---ccHHHHHHHHHhhccC--------CCcCCCCCCcccCChhhhhh
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT---FNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~~~~l~~l~~~--------~~~~~~~~S~g~~~rv~~~~ 221 (270)
-++++.+| ++.- -.++..-+|.. +..+.+.+++..++++ .+.+-..+|+|++||++.++
T Consensus 459 lflpQ~PY------~p~G----tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 459 LFLPQRPY------LPQG----TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred EEecCCCC------CCCc----cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 22333333 2222 13334444432 4566777888877765 34456689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFK 261 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~ 261 (270)
.+..+|+++++||.+..+||+....+-++++. ..+|++-+
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 99999999999999999999988888888875 34555544
No 386
>PLN02348 phosphoribulokinase
Probab=99.61 E-value=1.3e-15 Score=140.01 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=106.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC--
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-- 181 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~-~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-- 181 (270)
+..-+|||.|+||||||||++.|...+.... +..|.-.+.+...++...++.+|+|+..+.. .++..+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~g~t 117 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEKGVT 117 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChh---------hHhhcCCc
Confidence 4568999999999999999999999984110 0000000111112345677999999864321 111112
Q ss_pred --CCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225 182 --APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259 (270)
Q Consensus 182 --~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~ 259 (270)
.+...+.+.+.+.++.|+.+..+..|.|++..+...... ...++++||+||.+.+.|+ .+++++|.+|||++
T Consensus 118 ~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~ 191 (395)
T PLN02348 118 ALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDI 191 (395)
T ss_pred cCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCc----cccccCcEEEEEEC
Confidence 144566777889999999999999999999877654422 3456899999999999995 78899999999999
Q ss_pred cccchhhcc
Q 024225 260 FKETYFNRE 268 (270)
Q Consensus 260 ~~~~~~~r~ 268 (270)
+.++++.|+
T Consensus 192 ~~dvrl~RR 200 (395)
T PLN02348 192 SDDVKFAWK 200 (395)
T ss_pred CHHHHHHHH
Confidence 999986554
No 387
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=1.4e-15 Score=132.78 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=40.7
Q ss_pred cCCCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..+..+|+||+||++++.++. .+++++|+|||+..+|+...+.+.+.+.
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~ 206 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIK 206 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 456689999999999999885 3589999999999999976666665554
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=4.5e-15 Score=153.36 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=113.1
Q ss_pred hhccccCccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCC
Q 024225 67 VLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (270)
Q Consensus 67 ~~~~~~~~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~ 146 (270)
.+.+||.. -.++++|++..|.... -.+|+||||+|++||.|||+|..|||||||+..|.++.
T Consensus 1129 pp~~WP~~-G~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~--------------- 1190 (1381)
T KOG0054|consen 1129 PPPSWPSK-GEIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV--------------- 1190 (1381)
T ss_pred CCCCCCCC-CeEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc---------------
Confidence 45566643 4589999999997642 44779999999999999999999999999999999998
Q ss_pred CCCCceEEeecCCCCccccccCcccChHHHHHhcCC-CC-----------------CccHHHHHHHHHhhcc--------
Q 024225 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW-----------------TFNPLLLLNCLKNLRN-------- 200 (270)
Q Consensus 147 ~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~-----------------~~~~~~~~~~l~~l~~-------- 200 (270)
.|..|. |.+||.++..-. ...++.++++ |+ ++..+.+-+.++...+
T Consensus 1191 -e~~~G~-I~IDgvdI~~ig------L~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1191 -EPAEGE-ILIDGVDISKIG------LHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred -CccCCe-EEEcCeeccccc------HHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCC
Confidence 555666 777776654311 1123333333 22 2233333344443332
Q ss_pred -CCCcC----CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh----hHHHHHHhhc
Q 024225 201 -QGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD 252 (270)
Q Consensus 201 -~~~~~----~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~----~~~~l~~~~~ 252 (270)
+.+.. ...||-||+|-+.+++++..+.+|||+||.++..|.. .++.+++.|.
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence 22221 2378999999999999999999999999999999985 4555555555
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=2.5e-15 Score=126.35 Aligned_cols=171 Identities=16% Similarity=0.266 Sum_probs=119.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc--CCC-C--CCCC
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDS-Q--VKPP 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~--~~~-~--~~~p 149 (270)
|+++.++||+..+.....++.+++++|+++++||+-||+|+||||||-.+|.|+|..+++|--.+.. +++ + ...|
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 5678899999999887778899999999999999999999999999999999999998888655441 221 0 0111
Q ss_pred --------CceEEeecCCCCccccccCcccChHHHHH-hc-CC-CCCc----------cHHHHHHHHHhhccCC-----C
Q 024225 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RR-GA-PWTF----------NPLLLLNCLKNLRNQG-----S 203 (270)
Q Consensus 150 --------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~-g~-~~~~----------~~~~~~~~l~~l~~~~-----~ 203 (270)
....+|+++... ..+..+...+ .+ .+ .++| ...+..+++..++... .
T Consensus 81 r~RRk~ig~~isMIFQeP~s-------CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQS-------CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred HHhhhhhccchhhhhcCchh-------hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 112223333322 2211111111 11 11 1111 2233455666666543 2
Q ss_pred cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
-|+.++..|+.|++.++.+++.++++||.|||+..+|+..+.++..++.
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs 202 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLS 202 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHH
Confidence 3667889999999999999999999999999999999987777766665
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=9.7e-15 Score=150.95 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=116.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
..++++|.++..+.. .....|+||||+|++|+.+||+|+-|||||+|+..|.|.+. ..+|. +
T Consensus 517 ~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~----------------~~sG~-v 578 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP----------------KLSGS-V 578 (1381)
T ss_pred ceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc----------------cccce-E
Confidence 458889999998762 23337899999999999999999999999999999999994 33444 4
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---------CcC----CCCCCcccCChhhhhhh
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------SVY----APSFDHGVGDPVEDDIL 222 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---------~~~----~~~~S~g~~~rv~~~~~ 222 (270)
..+|-..+-++-+=..+. -.+.++=+...+|.+++.++++.-.+.+ ... .-.+|||||||+.+|++
T Consensus 579 ~v~gsiaYv~Q~pWI~ng-TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 579 AVNGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred EEcCeEEEeccccHhhCC-cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 444432221111111111 1333443455678888888877555432 222 23889999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHH-----Hhhc--cceEEecc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKCYATSF 260 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~-----~~~~--~~i~v~~~ 260 (270)
+-.++++.++|-|+..+|.+.-+++- .+++ ..|+|||.
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq 702 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ 702 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc
Confidence 99999999999999999986554443 3333 55888884
No 391
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.55 E-value=1.8e-14 Score=128.07 Aligned_cols=129 Identities=26% Similarity=0.380 Sum_probs=95.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC----CC
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW 184 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~----~~ 184 (270)
++||+|+||||||||++.|++++ .+..+.++.+|+++... . . .++..|+ +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll----------------~~~~~~vi~~Dd~~~~~----~----~-~r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF----------------GSDLVTVICLDDYHSLD----R----K-GRKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh----------------CCCceEEEECcccccCC----H----H-HHHHhhccccccc
Confidence 58999999999999999999998 45556678888875321 1 1 1223333 22
Q ss_pred CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
..+...+.+.++.++.++.+..|.|++........ ....+.+++|+||++++.+ ..+.+++|.+|||+++.+++
T Consensus 56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r 129 (273)
T cd02026 56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVK 129 (273)
T ss_pred chhHHHHHHHHHHHHCCCCcccccccccCCCcCCc--EEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHH
Confidence 33445566778888888888889998877653321 1224578999999999888 48889999999999999999
Q ss_pred hhcc
Q 024225 265 FNRE 268 (270)
Q Consensus 265 ~~r~ 268 (270)
+.|+
T Consensus 130 ~~r~ 133 (273)
T cd02026 130 FAWK 133 (273)
T ss_pred HHHH
Confidence 6653
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=133.16 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=122.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.|++-+.+|++.|.+.. . .+..++|-|.---.|+|+||||.|||||+++|.|-+. |+.|+...++. -.
T Consensus 584 PPvLGlH~VtFgy~gqk--p-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhr-----L~- 651 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK--P-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHR-----LR- 651 (807)
T ss_pred CCeeecccccccCCCCC--c-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccce-----ee-
Confidence 46899999999997633 2 5699999999999999999999999999999999884 77776433321 11
Q ss_pred eecCCCCccccccCcccCh-HHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEE
Q 024225 155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~il 230 (270)
|-..+++. ...++..+.+ +++.+.+.++ .......+-.+++. ..+.+..+|||++.|++++..-...|+||
T Consensus 652 iG~FdQh~-~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl 726 (807)
T KOG0066|consen 652 IGWFDQHA-NEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL 726 (807)
T ss_pred eechhhhh-HHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence 21122221 1224444444 3444444433 23344555555543 34677899999999999987666789999
Q ss_pred EEeCCCCCCChhhHHHHHHhhccc----eEEeccccchhhcc
Q 024225 231 IVDGNYLFLDGGVWKDVSSMFDEK----CYATSFKETYFNRE 268 (270)
Q Consensus 231 Ild~~~~~lDe~~~~~l~~~~~~~----i~v~~~~~~~~~r~ 268 (270)
|+|+|+.-||-.....+.+.+++. |.|+| |+|++++
T Consensus 727 ILDEPTNNLDIESIDALaEAIney~GgVi~VsH--DeRLi~e 766 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINEYNGGVIMVSH--DERLIVE 766 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHhccCcEEEEec--ccceeee
Confidence 999999999988888888888743 55555 4555443
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=1.9e-14 Score=132.59 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=100.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
+++--+++|.|++.. |.=-.=++..||++|++||||-|||||+++|+|.++ |++|. ... ..++
T Consensus 342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~--------~~~-~~vS 404 (591)
T COG1245 342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS--------EED-LKVS 404 (591)
T ss_pred eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC--------Ccc-ceEe
Confidence 456667888887643 222234578899999999999999999999999996 77774 111 1244
Q ss_pred cCCCCccc-cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 157 MDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 157 ~dg~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
+..+++.. .+.++. +......... ..+.....++.+.|.+.. +.....+|||+.||++++.++..++++-++|
T Consensus 405 yKPQyI~~~~~gtV~---~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD 480 (591)
T COG1245 405 YKPQYISPDYDGTVE---DLLRSAIRSA-FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD 480 (591)
T ss_pred ecceeecCCCCCcHH---HHHHHhhhhh-cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec
Confidence 44444321 111221 1111111110 011122234555555442 4567799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhc
Q 024225 234 GNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~ 252 (270)
||.+.||-+.+-.+...++
T Consensus 481 EPSA~LDvEqR~~vakvIR 499 (591)
T COG1245 481 EPSAYLDVEQRIIVAKVIR 499 (591)
T ss_pred CchhhccHHHHHHHHHHHH
Confidence 9999999865555555554
No 394
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.53 E-value=4.7e-14 Score=124.54 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=56.0
Q ss_pred HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEe
Q 024225 192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYAT 258 (270)
Q Consensus 192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~ 258 (270)
.+.++.++++. ......+|+|++||+.++.++..+ ++++|+|||+..+|+...+.+.++++. .|+++
T Consensus 150 ~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiit 229 (261)
T cd03271 150 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229 (261)
T ss_pred HHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 44555666643 445679999999999999998875 689999999999999877777776662 37888
Q ss_pred ccccc
Q 024225 259 SFKET 263 (270)
Q Consensus 259 ~~~~~ 263 (270)
|+.+.
T Consensus 230 H~~~~ 234 (261)
T cd03271 230 HNLDV 234 (261)
T ss_pred CCHHH
Confidence 87753
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.52 E-value=4.5e-14 Score=118.38 Aligned_cols=178 Identities=16% Similarity=0.056 Sum_probs=117.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCC-----CCCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQ-----VKPPD 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~-----~~~p~ 150 (270)
.+++.++.+.|+... ..+-|+|++++.|....++|.||||||||+|+|+|--. -.-|.+ ..+. ..-..
T Consensus 13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence 589999999998643 25689999999999999999999999999999999642 111221 1110 00112
Q ss_pred ceEEeecCCCCccc----cccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccC
Q 024225 151 VATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 151 ~g~~i~~dg~~~~~----~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
+|...++.|.-... ...+...+....+..+|+... +.++-..+++-+.....-+....|-||++|+.++.-+..+
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 33322333221110 001111122223444555322 3345556666666665666778999999999999999889
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhcc--------ceEEeccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE--------KCYATSFK 261 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~--------~i~v~~~~ 261 (270)
-++|++||.+.-||--.+..+.+++++ .+|.+|-.
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 999999999999998888888888872 37777654
No 396
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.52 E-value=7e-14 Score=122.56 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH---HHHhcCC--C
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE---AHARRGA--P 183 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~---~~~~~g~--~ 183 (270)
++||.|.|||||||+++.|...+.+ .+....++..|+|+.+.. ....+.... ....+.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence 5899999999999999999988841 233456699999986321 111000000 1123444 7
Q ss_pred CCccHHHHHHHHHhhccCCCcCCCCCCcc----------cCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHG----------VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g----------~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~ 253 (270)
.+++.+.+.+.++.++.++....|.|++. .+.+.... .+..++++||+||.+.++.- ...++++++|.
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~-~~~~lr~~~Dl 143 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVT-EGYNVAQHADL 143 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCccccc-ccHHHHHhCCe
Confidence 88899999999999999999988988662 12222211 13367999999999954421 12599999999
Q ss_pred ceEEeccccchhhccC
Q 024225 254 KCYATSFKETYFNREA 269 (270)
Q Consensus 254 ~i~v~~~~~~~~~r~~ 269 (270)
+|||+++.+.++.|+.
T Consensus 144 kIfVd~~~dlr~irRI 159 (277)
T cd02029 144 LVGVVPIINLEWIQKI 159 (277)
T ss_pred EEEecCcHHHHHHHHH
Confidence 9999999999998863
No 397
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=3.6e-15 Score=128.00 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=90.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCC----cccCCCCCCCC--C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQK----ASSFDSQVKPP--D 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~-~~~----G~~~~~~~~~p--~ 150 (270)
++++|.. .|++.. +++++++ +++||+|||||||||++++|...+.... ... |.........| +
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence 5667776 676533 6678776 8999999999999999999985542100 000 00111111111 1
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHH--HHHHHHHhhcc--CCCcCCCCCCcccCChhhhhhhhcc-
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--LLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL- 225 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~~- 225 (270)
...+....... .... ..+..|+....... ...++.+.+.+ ..+..+..+|+|+++|+.++.+++.
T Consensus 76 ~~~~~~~~~~~---------~~~~-~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~ 145 (212)
T cd03274 76 SCSVEVHFQEI---------IDKP-LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALH 145 (212)
T ss_pred eEEEEEEEEeC---------CCHH-HHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhc
Confidence 11111111100 0000 00112221100000 00111122222 2344566899999999999998753
Q ss_pred ---CCcEEEEeCCCCCCChhhHHHHHHhhccc------eEEeccc
Q 024225 226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK------CYATSFK 261 (270)
Q Consensus 226 ---~~~ilIld~~~~~lDe~~~~~l~~~~~~~------i~v~~~~ 261 (270)
+++++++|||+..+|+..++.+.+++... |+++++.
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~ 190 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN 190 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH
Confidence 47999999999999998887777777633 6777664
No 398
>PRK07429 phosphoribulokinase; Provisional
Probab=99.50 E-value=9.4e-14 Score=126.32 Aligned_cols=133 Identities=24% Similarity=0.382 Sum_probs=99.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC--
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-- 182 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-- 182 (270)
.+.-+|||.|+||||||||++.|++++ .+..+.++.+|+++..+ .. .++..|.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll----------------~~~~~~vi~~Dd~~~~~--------~~-~r~~~g~~~ 60 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLL----------------GEELVTVICTDDYHSYD--------RK-QRKELGITA 60 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHh----------------ccCceEEEEecccccCC--------HH-HHHhcCCcc
Confidence 345799999999999999999999998 45556678999875221 11 1233443
Q ss_pred --CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEecc
Q 024225 183 --PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSF 260 (270)
Q Consensus 183 --~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~ 260 (270)
+...+...+.+.++.+..++.+..|.|++......... ...+.+++|+||.+++.++ .+.+++|.+|||+++
T Consensus 61 l~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~----~lr~~~D~~I~Vda~ 134 (327)
T PRK07429 61 LDPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDE----RVRELYDFKVYLDPP 134 (327)
T ss_pred cCccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcH----hHHhhCCEEEEEECC
Confidence 23344566777888888898888899988766544311 2235789999999988884 788999999999999
Q ss_pred ccchhhcc
Q 024225 261 KETYFNRE 268 (270)
Q Consensus 261 ~~~~~~r~ 268 (270)
.++++.|+
T Consensus 135 ~evr~~Rr 142 (327)
T PRK07429 135 EEVKIAWK 142 (327)
T ss_pred HHHHHHHH
Confidence 99997553
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.5e-14 Score=131.67 Aligned_cols=167 Identities=14% Similarity=0.003 Sum_probs=104.3
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
-|.+.+.+..|++.. .|.+-++++..|...||+|+||+|||||+|+|+.---+. .|..-.+..
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~-------------f~veqE~~g 142 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSG-------------FHVEQEVRG 142 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCc-------------cCchhheec
Confidence 477788999999754 569999999999999999999999999999998721000 111111001
Q ss_pred cCCCCccccccCcc-cChHHHHHhcCCCCCccHHHHHH-HHHhhccCCC---cCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 157 MDGFHLYLSQLDAM-EDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 157 ~dg~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~~~-~l~~l~~~~~---~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
.+-.++.. .+... ....+..+...+........+.. +|..+++..+ .....||||=+-|+++++++-.+||+|+
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL 221 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL 221 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe
Confidence 11111100 01111 01111111111111112222222 5666666543 3556999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
+|||+..||-....-+...+. ..+.|+||.
T Consensus 222 LDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr 255 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDR 255 (582)
T ss_pred ecCCcccchhHHHHHHHHHHhhCCceEEEEeccH
Confidence 999999999876666666665 335555553
No 400
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=1.6e-13 Score=112.51 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=85.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
+++++||...- -|..+|.++..||++-++||||||||||+..++|++ |-+|. |.
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-----------------~~sGs-i~ 56 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-----------------SGSGS-IQ 56 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-----------------CCCce-EE
Confidence 45666665433 246678899999999999999999999999999996 34455 66
Q ss_pred cCCCCccccccCcccChHHHHHhc--------------------CCCCCccHHHHHHHHHhhccCCC--cCCCCCCcccC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARR--------------------GAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG 214 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~l~~l~~~~~--~~~~~~S~g~~ 214 (270)
++|..+... +..+..+.+. ..|.+.....+..+...+.++.+ ..+..+|||+-
T Consensus 57 ~~G~~l~~~-----~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEW 131 (248)
T COG4138 57 FAGQPLEAW-----SATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131 (248)
T ss_pred ECCcchhHH-----hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccc
Confidence 666654321 1111111110 00111111122333344444433 35668999999
Q ss_pred Chhhhhh-------hhccCCcEEEEeCCCCCCChh
Q 024225 215 DPVEDDI-------LVGLQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 215 ~rv~~~~-------~l~~~~~ilIld~~~~~lDe~ 242 (270)
||+-++- .+++..+++++|||+..+|-.
T Consensus 132 QRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA 166 (248)
T COG4138 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166 (248)
T ss_pred eeeEEeEEEEEecCCCCccceeEEecCCCcchhHH
Confidence 9998773 244466799999999999963
No 401
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.49 E-value=2.3e-14 Score=122.91 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=91.6
Q ss_pred eEEeccchhhhhhhhcccccccccceecC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC-C---CCC-CCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-D---SQV-KPPD 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~-~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~-~---~~~-~~p~ 150 (270)
.++++|.. .|.+. .+++|+.. +|++++|+||||||||||+++|++.+.. +..+... + ... ..+.
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 37788888 55431 45566543 5899999999999999999999965410 1111100 0 000 0111
Q ss_pred ce--EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHH--HHhhcc--CCCcCCCCCCcccCChhhhhhhhc
Q 024225 151 VA--TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC--LKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 151 ~g--~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~--l~~l~~--~~~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
.. .++..+....+ ...+ ..++ +...+.+. +....+ ..+..+..+|+|+++|++++.+++
T Consensus 75 ~~~v~~~f~~~~~~~----~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 75 TAEVSFTFQLGGKKY----RVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cEEEEEEEEECCeEE----EEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 11 11222221100 1111 1121 22222211 111111 124456689999999999999886
Q ss_pred c----------CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 225 L----------QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 225 ~----------~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
. +++++|+|||+..+|+..++.+.+++. ..|+++|+.+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 3 568999999999999977776666554 2367777664
No 402
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.48 E-value=2.4e-13 Score=128.34 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=115.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccCCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~-~~G~~~~~~~~~p~~g~~ 154 (270)
+.+++++|+..-++. ....++|+||+|++|.-+-|.||||||||+|+|.|+|+ || .+|.+.......|...-+
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL----Wp~~~G~l~k~~~~~~~~lff 505 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL----WPSTGGKLTKPTDGGPKDLFF 505 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc----cccCCCeEEecccCCCCceEE
Confidence 679999999999874 23356899999999999999999999999999999997 67 455521110001222233
Q ss_pred eecCCCCccccccCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccC--------CC-----cCCCCCCcccCChhhhh
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--------GS-----VYAPSFDHGVGDPVEDD 220 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~l~~~--------~~-----~~~~~~S~g~~~rv~~~ 220 (270)
+++..|...- +.++..-+. .+........+.+.+...+++++++ .+ -+...+|+|++||++.|
T Consensus 506 lPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A 582 (659)
T KOG0060|consen 506 LPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA 582 (659)
T ss_pred ecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence 4444442110 000000000 0000111223456677778877764 11 24458899999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc--eEEeccc
Q 024225 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK--CYATSFK 261 (270)
Q Consensus 221 ~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~--i~v~~~~ 261 (270)
+.+-.+|++-|+||.+..+|+..-..+-.++++. -|+++.+
T Consensus 583 RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgH 625 (659)
T KOG0060|consen 583 RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGH 625 (659)
T ss_pred HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEecc
Confidence 9999999999999999999986666665555522 2445443
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.48 E-value=6.9e-14 Score=131.13 Aligned_cols=158 Identities=14% Similarity=0.051 Sum_probs=98.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
..++++|+++.|.+.. .++|+.|++.+|+.+||+|+|||||||++++|.|... | .|..-.+.
T Consensus 74 ~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P-----------~p~~~d~y 135 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---P-----------IPEHIDFY 135 (614)
T ss_pred ccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---C-----------CCcccchh
Confidence 4589999999998744 7799999999999999999999999999999999862 2 11111111
Q ss_pred ecCCCCccccccCccc-----------ChHHHHHhcCC-CCCccHHHHHHH-------------------HHhhccC---
Q 024225 156 PMDGFHLYLSQLDAME-----------DPKEAHARRGA-PWTFNPLLLLNC-------------------LKNLRNQ--- 201 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~-----------~~~~~~~~~g~-~~~~~~~~~~~~-------------------l~~l~~~--- 201 (270)
.++-...+. ..++.+ ..++..+++.- ..+.+.+.+.++ +-.+++.
T Consensus 136 ~ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 136 LLSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred hhcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 111111110 011100 00111111111 011111112111 1111221
Q ss_pred CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 202 ~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
.......||+|.+.|++++.++-..|++|++|||+..||.....-+.+.+.
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 234566999999999999999999999999999999999865555554443
No 404
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=7.1e-14 Score=122.80 Aligned_cols=152 Identities=9% Similarity=0.033 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-cc-CCCC--------C--CCCCceEEeecCCCC-------cccccc
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL 167 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G-~~-~~~~--------~--~~p~~g~~i~~dg~~-------~~~~~l 167 (270)
+.+++|+||||||||||+++|++++. +..| ++ ..+. . .......++.++... -..+.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 67999999999999999999999984 3322 22 1110 0 011123334443210 001112
Q ss_pred CcccChHHHHHhcC-C-CCCccHHHHHHHHHhhccCC----------------------CcCCCCCCcccCChhhhhhhh
Q 024225 168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 168 ~~~~~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~~~~----------------------~~~~~~~S~g~~~rv~~~~~l 223 (270)
++.++......... + ........+.+.++.+++.. +.++..+|+|++||++++.++
T Consensus 102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 32222211110000 1 11122345566677666541 245669999999999999987
Q ss_pred c----cCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225 224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK 261 (270)
Q Consensus 224 ~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~ 261 (270)
. .+++++++|||+..+|....+.+.+++.. .|+++|..
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~ 229 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE 229 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 6 46799999999999998777777666652 37888774
No 405
>PLN02796 D-glycerate 3-kinase
Probab=99.43 E-value=2.2e-13 Score=123.66 Aligned_cols=131 Identities=24% Similarity=0.355 Sum_probs=92.8
Q ss_pred cccccceec---CCCe-----EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccc
Q 024225 96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQ 166 (270)
Q Consensus 96 ~l~~isl~i---~~ge-----ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~ 166 (270)
+++++++.+ ++|+ ++||+|+||||||||++.|.+++.. .. ..+. +++||+++...+
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~--------------~g~~~g~-IsiDdfYLt~~e 145 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNA--------------TGRRAAS-LSIDDFYLTAAD 145 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcc--------------cCCceeE-EEECCcccchhh
Confidence 457888776 3444 5999999999999999999999940 11 2354 999999875432
Q ss_pred cCcc--cCh-HHHHHhcCCCCCccHHHHHHHHHhhc----cCCCcCCCCCCccc----CChhhhh--hhhccCCcEEEEe
Q 024225 167 LDAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVD 233 (270)
Q Consensus 167 l~~~--~~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----~~~~~~~~~~S~g~----~~rv~~~--~~l~~~~~ilIld 233 (270)
.... +++ ......+|.+.++|.....++++.+. .+..+.+|.|++.. .+|.... ..+..+.+|||+|
T Consensus 146 ~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~E 225 (347)
T PLN02796 146 QAKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFE 225 (347)
T ss_pred HHHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEc
Confidence 2211 111 12344567788899888888888887 56778999998765 4565432 1344578999999
Q ss_pred CCCCCCCh
Q 024225 234 GNYLFLDG 241 (270)
Q Consensus 234 ~~~~~lDe 241 (270)
|.+++.-+
T Consensus 226 Gw~vG~~p 233 (347)
T PLN02796 226 GWMLGFKP 233 (347)
T ss_pred CcccCCCC
Confidence 99999854
No 406
>PRK15453 phosphoribulokinase; Provisional
Probab=99.43 E-value=1.3e-12 Score=115.53 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcc-ccccCcccChHH-HHHhcCC-
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKE-AHARRGA- 182 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~-~~~l~~~~~~~~-~~~~~g~- 182 (270)
++-+|||.|.|||||||+++.|...+.+ ......++..|+|+.+ +.++........ ....+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf 69 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF 69 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence 4579999999999999999999987731 2223556899999853 222221110000 0112334
Q ss_pred -CCCccHHHHHHHHHhhccCCCcCCCCCCcc--c---CChhhhh----hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--V---GDPVEDD----ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 183 -~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g--~---~~rv~~~----~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
|.+++.+.+.+.++.++.+.....+.|++. + ..+.... ..+..++++||+||.+.+... ....+++++|
T Consensus 70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~-~~~~lr~~~D 148 (290)
T PRK15453 70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVT-DQVDVAQHVD 148 (290)
T ss_pred CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccccc-ccHHHHHhCC
Confidence 678888889999999988776666666421 1 1111111 124356899999999988531 1268999999
Q ss_pred cceEEeccccchhhccC
Q 024225 253 EKCYATSFKETYFNREA 269 (270)
Q Consensus 253 ~~i~v~~~~~~~~~r~~ 269 (270)
.+|||+++.+.+++|+.
T Consensus 149 lkIfVdp~~dlr~irRI 165 (290)
T PRK15453 149 LLIGVVPIVNLEWIQKI 165 (290)
T ss_pred eeEeeCCcHhHHHHHHH
Confidence 99999999999998863
No 407
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.42 E-value=7.2e-13 Score=113.08 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=46.7
Q ss_pred CcCCCCCCcccCCh------hhhhhhhccCCcEEEEeCCCCCCChhhHH-HHHHhhc--------cceEEecccc
Q 024225 203 SVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGVWK-DVSSMFD--------EKCYATSFKE 262 (270)
Q Consensus 203 ~~~~~~~S~g~~~r------v~~~~~l~~~~~ilIld~~~~~lDe~~~~-~l~~~~~--------~~i~v~~~~~ 262 (270)
+..+..+|+|++++ ++++.++..+++++++|||+..+|+..++ .+.+++. ..|+++|+.+
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence 34567899999996 56777888899999999999999997777 6666664 1367777654
No 408
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.41 E-value=2.9e-12 Score=108.86 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=79.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcc----cCCCCCCCCCceEEeecCCCCccccccCc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS----SFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~--~~G~----~~~~~~~~p~~g~~i~~dg~~~~~~~l~~ 169 (270)
.++++.+++.+| +.+|+||||||||||+..|...+..... ..|. ......... ... +.+++...+.
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~-~i~-~~~~~~~~~~----- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSA-KIT-VTLKNQGLDA----- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeE-EEE-EEEEcCCccC-----
Confidence 346667777776 7799999999999999999876531000 0011 000000000 111 1111111110
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh----ccCCcEEEEeCCCCCCChhhHH
Q 024225 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWK 245 (270)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l----~~~~~ilIld~~~~~lDe~~~~ 245 (270)
+ .........+.++++. .......+..||+|+++|++++.++ ..+++++|+|||+..+|.....
T Consensus 83 --~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 83 --N---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred --C---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 0 0000111233444544 2233556779999999999999888 5799999999999999997555
Q ss_pred HHHHhh
Q 024225 246 DVSSMF 251 (270)
Q Consensus 246 ~l~~~~ 251 (270)
.+.+++
T Consensus 151 ~~~~~l 156 (198)
T cd03276 151 ISTDLL 156 (198)
T ss_pred HHHHHH
Confidence 555544
No 409
>PRK07667 uridine kinase; Provisional
Probab=99.37 E-value=2e-12 Score=109.38 Aligned_cols=135 Identities=18% Similarity=0.307 Sum_probs=93.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC-
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP- 183 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~- 183 (270)
...-+|||.|++||||||+++.|...+++ ......++.+|+++..... +...+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~--------------~~~~~~~i~~Dd~~~~~~~----------~~~~~~~~ 70 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ--------------EGIPFHIFHIDDYIVERNK----------RYHTGFEE 70 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh--------------CCCcEEEEEcCcccchhhh----------HHhcCCCc
Confidence 34579999999999999999999998841 1223456899987643211 1111111
Q ss_pred ------CCccHHHHH-HHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceE
Q 024225 184 ------WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCY 256 (270)
Q Consensus 184 ------~~~~~~~~~-~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~ 256 (270)
..++...+. .++..+..+..+..|.|+.....+......+ ...+++|+|+++++- ..+.+++|..||
T Consensus 71 ~~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l~~-----~~~~~~~d~~v~ 144 (193)
T PRK07667 71 WYEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFLQR-----KEWRDFFHYMVY 144 (193)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeeccccccccccceec-CCCCEEEEEehhhhh-----hhHHhhceEEEE
Confidence 123444443 4567788887888899988776654322222 457899999999643 367789999999
Q ss_pred EeccccchhhccC
Q 024225 257 ATSFKETYFNREA 269 (270)
Q Consensus 257 v~~~~~~~~~r~~ 269 (270)
|+++.++++.|..
T Consensus 145 V~~~~~~~~~R~~ 157 (193)
T PRK07667 145 LDCPRETRFLRES 157 (193)
T ss_pred EECCHHHHHHHHh
Confidence 9999999988863
No 410
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.37 E-value=1.6e-12 Score=118.93 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=102.0
Q ss_pred Eeccchhhhhhhhcc--cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 79 EARCMDEVYDALAQR--LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~--v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
++.+|...|+..+.. -.+++|+||++++|++++|+|+|||||||++++|+|.....+. ..-+|++|. +.
T Consensus 379 e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~e--------e~y~p~sg~-v~ 449 (593)
T COG2401 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGE--------EKYRPDSGK-VE 449 (593)
T ss_pred HHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccc--------cccCCCCCc-ee
Confidence 344566667654422 2357999999999999999999999999999999999743221 112344443 22
Q ss_pred cCCCCcc-------ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC----cCCCCCCcccCChhhhhhhhcc
Q 024225 157 MDGFHLY-------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGL 225 (270)
Q Consensus 157 ~dg~~~~-------~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~----~~~~~~S~g~~~rv~~~~~l~~ 225 (270)
+--..+. .+.+.... ..+.++ ...-|.....+++...++... ....++|-||+.|..++..+..
T Consensus 450 vp~nt~~a~iPge~Ep~f~~~t----ilehl~-s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae 524 (593)
T COG2401 450 VPKNTVSALIPGEYEPEFGEVT----ILEHLR-SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE 524 (593)
T ss_pred ccccchhhccCcccccccCchh----HHHHHh-hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc
Confidence 1111000 01111000 111111 122355556677777776543 2345889999999999999999
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMF 251 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~ 251 (270)
.+.++++|+--+.||+-....+..-+
T Consensus 525 rpn~~~iDEF~AhLD~~TA~rVArki 550 (593)
T COG2401 525 RPNVLLIDEFAAHLDELTAVRVARKI 550 (593)
T ss_pred CCCcEEhhhhhhhcCHHHHHHHHHHH
Confidence 99999999999999995544444333
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.5e-12 Score=132.72 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=112.7
Q ss_pred cccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC----CCCceEEeecCCCCccccc
Q 024225 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----PPDVATVLPMDGFHLYLSQ 166 (270)
Q Consensus 92 ~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~----~p~~g~~i~~dg~~~~~~~ 166 (270)
.+...|+||+=-+.+|.+.||+|+||||||||+++|+|.... --.+|++ ++|... .+.+..++.+++.|+..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~-- 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE-- 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcc--
Confidence 334567999999999999999999999999999999998520 0113443 333211 12233348888888754
Q ss_pred cCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhccC--CCcCC----CCCCcccCChhhhhhhhccCC-cEEEEeCC
Q 024225 167 LDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQ--GSVYA----PSFDHGVGDPVEDDILVGLQH-KVVIVDGN 235 (270)
Q Consensus 167 l~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~l~~~--~~~~~----~~~S~g~~~rv~~~~~l~~~~-~ilIld~~ 235 (270)
+++.|-..+-... ..+... ..+.+.++++.|.+. .+.-+ .-+|.+|++|+.++..|..+| -+|.+|||
T Consensus 879 ~TVrESL~fSA~L-Rlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 879 LTVRESLRFSAAL-RLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred cchHHHHHHHHHH-cCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 7776655443322 222222 224567788877776 22222 358999999999999888888 79999999
Q ss_pred CCCCChhhHHHHHHhhc------cceEEeccc
Q 024225 236 YLFLDGGVWKDVSSMFD------EKCYATSFK 261 (270)
Q Consensus 236 ~~~lDe~~~~~l~~~~~------~~i~v~~~~ 261 (270)
+.+||.....-+.++++ ..|.-|+++
T Consensus 958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ 989 (1391)
T KOG0065|consen 958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ 989 (1391)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 99999854444444333 557777776
No 412
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=2.1e-12 Score=113.33 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=44.4
Q ss_pred CCCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 207 PSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
..+|+|++++++++.++.. +++++|+|||+..+|...+..+.+++. ..|+++|+.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~ 219 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE 219 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence 5789999999999998875 389999999999999976666666555 237777764
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.32 E-value=9.2e-12 Score=126.64 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA 257 (270)
Q Consensus 191 ~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v 257 (270)
..+.++.++++. ...+..||+|++||+.++.++..++ +++|+|||+..||....+.+.++++ ..|++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345666677653 4466799999999999999998888 9999999999999977777766665 23788
Q ss_pred eccccc
Q 024225 258 TSFKET 263 (270)
Q Consensus 258 ~~~~~~ 263 (270)
+|+.+.
T Consensus 890 tH~~~~ 895 (943)
T PRK00349 890 EHNLDV 895 (943)
T ss_pred ecCHHH
Confidence 887754
No 414
>PRK06696 uridine kinase; Validated
Probab=99.29 E-value=5.5e-12 Score=109.01 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=88.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC--
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-- 181 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g-- 181 (270)
-...-+|||.|++|||||||++.|+..++. .+.....+.+|+|+.... .+...+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--------------~g~~v~~~~~Ddf~~~~~----------~r~~~~~~ 74 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK--------------RGRPVIRASIDDFHNPRV----------IRYRRGRE 74 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH--------------cCCeEEEeccccccCCHH----------HHHHcCCC
Confidence 345679999999999999999999999841 122334467999975431 111111
Q ss_pred ----C-CCCccHHHHHHHHHh-hccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225 182 ----A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (270)
Q Consensus 182 ----~-~~~~~~~~~~~~l~~-l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~ 253 (270)
+ ...++...+.+.+-. +..+. .+..+.|+.....+...........+++|+|+++++-+ .+.+.++.
T Consensus 75 ~~~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~-----~~~~~~d~ 149 (223)
T PRK06696 75 SAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP-----ELRDLWDY 149 (223)
T ss_pred ChhhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh-----hHHhhCCE
Confidence 1 234566655554433 32322 24445666655444322222334577999999998643 77889999
Q ss_pred ceEEeccccchhhcc
Q 024225 254 KCYATSFKETYFNRE 268 (270)
Q Consensus 254 ~i~v~~~~~~~~~r~ 268 (270)
.|||+++.++++.|+
T Consensus 150 ~i~v~~~~e~~~~R~ 164 (223)
T PRK06696 150 KIFLDTDFEVSRRRG 164 (223)
T ss_pred EEEEECCHHHHHHHH
Confidence 999999999998875
No 415
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.28 E-value=1e-11 Score=114.95 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=82.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccCcc--cCh-HHHHHhcC
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRG 181 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~~~--~~~-~~~~~~~g 181 (270)
+.-+|||+|++|||||||++.|.++++. .. ..+. |.+||+++...+.... .++ .....-+|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~--------------~g~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG 275 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRV--------------TGRKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRG 275 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc--------------cCCceEE-EEECCccCChHHHHHHHhhCccchhhcccC
Confidence 4689999999999999999999999840 11 2444 9999998643211110 011 01122345
Q ss_pred CCCCccHHHHHHHHHhh----ccCCCcCCCCCCccc----CChhhhh--hhhccCCcEEEEeCCCCCCCh
Q 024225 182 APWTFNPLLLLNCLKNL----RNQGSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 182 ~~~~~~~~~~~~~l~~l----~~~~~~~~~~~S~g~----~~rv~~~--~~l~~~~~ilIld~~~~~lDe 241 (270)
.+..+|.....+.++.+ +.+..+.+|.|+... .+|.... ..+..+.+|||+||.+++..+
T Consensus 276 ~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P 345 (460)
T PLN03046 276 NAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKP 345 (460)
T ss_pred CCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCC
Confidence 66778877776666666 567788999998755 5576542 224467899999999998854
No 416
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.8e-11 Score=114.48 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=105.5
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.+++++++++..- .++|+||++.+|||+||.|--|||+|-|++.|.|.-. +..|+
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~-------------- 315 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGE-------------- 315 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCce--------------
Confidence 3567788776543 3589999999999999999999999999999999652 33444
Q ss_pred eecCCCCcccc------------------------ccCcccChHHH-HHh-cCCCCCccHH----HHHHHHHhhccC---
Q 024225 155 LPMDGFHLYLS------------------------QLDAMEDPKEA-HAR-RGAPWTFNPL----LLLNCLKNLRNQ--- 201 (270)
Q Consensus 155 i~~dg~~~~~~------------------------~l~~~~~~~~~-~~~-~g~~~~~~~~----~~~~~l~~l~~~--- 201 (270)
+.+||..+... .++..+|.... ..+ .... -.+.. ......+.+...
T Consensus 316 i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~-~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 316 ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG-LIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred EEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc-ccChHHHHHHHHHHHHhcCcccCC
Confidence 44444432210 01112222111 001 0000 11111 122333333332
Q ss_pred CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccc-------eEEeccccc
Q 024225 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-------CYATSFKET 263 (270)
Q Consensus 202 ~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~-------i~v~~~~~~ 263 (270)
.+..+..+|||.+|++.++.++..+|++||+|||+-+.|=....++-+++.+. ++++.+.++
T Consensus 395 ~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE 463 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE 463 (500)
T ss_pred ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 23455689999999999999999999999999999999988788877777732 566665543
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.25 E-value=4.5e-12 Score=107.75 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.3
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.|++++. |++++|+||||||||||+|.|++..
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 447776655 7999999999999999999999876
No 418
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.23 E-value=3.4e-11 Score=127.94 Aligned_cols=71 Identities=10% Similarity=-0.068 Sum_probs=55.9
Q ss_pred HHHHhhccCC---CcCCCCCCcccCChhhhhhhhc---cCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEec
Q 024225 193 NCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATS 259 (270)
Q Consensus 193 ~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~---~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~ 259 (270)
+.++.++++. +..+..+|+||+||+.++.++. .+++++|+|||+..||....+.+.++++ ..|+++|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4555555542 3456789999999999999996 5899999999999999987777777775 2378888
Q ss_pred cccc
Q 024225 260 FKET 263 (270)
Q Consensus 260 ~~~~ 263 (270)
+.+.
T Consensus 871 dl~~ 874 (1809)
T PRK00635 871 NMHV 874 (1809)
T ss_pred CHHH
Confidence 8754
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.22 E-value=1.3e-11 Score=104.80 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=67.3
Q ss_pred ccccceecCCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChH
Q 024225 97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (270)
Q Consensus 97 l~~isl~i~~ge-ivgL~GpnGsGKSTLlk~L~-gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~ 174 (270)
+.+++|++.+|+ +++|.||||||||||+|.|+ +.+ .+..|..++....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~----------------~~~~G~~vp~~~~-------------- 66 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL----------------MAQSGLPIPAAEG-------------- 66 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH----------------HHHcCCCcccccc--------------
Confidence 467899999995 89999999999999999998 332 1111211111100
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225 175 EAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (270)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l 247 (270)
...++..+. +..+... .......||+|++++..++..+ .+++++++|||+..+|...+..+
T Consensus 67 ---~~~~~~~~~--------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i 129 (200)
T cd03280 67 ---SSLPVFENI--------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAAL 129 (200)
T ss_pred ---ccCcCccEE--------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHH
Confidence 001100000 0000000 1223457899999988876554 68999999999999998655444
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=4.7e-11 Score=121.30 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=55.3
Q ss_pred HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhcc---CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225 192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT 258 (270)
Q Consensus 192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~---~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~ 258 (270)
.++++.++++. ......||+||+||+.++.++.. +++++|+|||+..||....+.+.++++ ..|+++
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45566666642 34567999999999999999875 479999999999999987777776665 236777
Q ss_pred ccccc
Q 024225 259 SFKET 263 (270)
Q Consensus 259 ~~~~~ 263 (270)
|+.+.
T Consensus 889 H~~~~ 893 (924)
T TIGR00630 889 HNLDV 893 (924)
T ss_pred CCHHH
Confidence 77753
No 421
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.2e-11 Score=112.86 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=113.1
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.|.+++.+|++.|...+- ..+.+++++++.-..++++|+||+||||++|++.+.+. |.+|.+..+... ..+
T Consensus 360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~r~--ri~-- 430 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHPRL--RIK-- 430 (582)
T ss_pred CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecccc--eec--
Confidence 467999999999976431 35689999999999999999999999999999999873 333331111000 000
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCc---CCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV---YAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~---~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
..-.++... ++...+.-.. ...-++.. ..+.+...+..+++..+. .+..+||||+.|+++|...-..|.+||
T Consensus 431 -~f~Qhhvd~--l~~~v~~vd~-~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 431 -YFAQHHVDF--LDKNVNAVDF-MEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred -chhHhhhhH--HHHHhHHHHH-HHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 000011111 0110000001 11112222 345566777777776432 345799999999999988888999999
Q ss_pred EeCCCCCCChhhHHHHHHhhccc----eEEeccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFDEK----CYATSFK 261 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~~~----i~v~~~~ 261 (270)
+|||+..||-.....+...++.. |-|+||.
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~ 539 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDE 539 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcH
Confidence 99999999987777777766632 6677664
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.15 E-value=9.8e-11 Score=109.96 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=99.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
-|.++|+-..-++.. + ++..++|+|++|--+-|.||||||||+|.|+|.|+ ||..+....- .+|+...+|+
T Consensus 481 gI~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL----WPvy~g~L~~--P~~~~mFYIP 551 (728)
T KOG0064|consen 481 GIILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL----WPVYNGLLSI--PRPNNIFYIP 551 (728)
T ss_pred ceEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhcc----CcccCCeeec--CCCcceEecc
Confidence 367778777777633 3 46899999999999999999999999999999997 6764432111 1334444444
Q ss_pred cCCCCcc---ccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--------C---CcCCCCCCcccCChhhhhhh
Q 024225 157 MDGFHLY---LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------G---SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 157 ~dg~~~~---~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--------~---~~~~~~~S~g~~~rv~~~~~ 222 (270)
+..|.-. +.++ ...+.....++.|+.++ | +..+++.+.+. - .-+...+|||++||+++++.
T Consensus 552 QRPYms~gtlRDQI-IYPdS~e~~~~kg~~d~-d---L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 552 QRPYMSGGTLRDQI-IYPDSSEQMKRKGYTDQ-D---LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred CCCccCcCccccee-ecCCcHHHHHhcCCCHH-H---HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 4444210 0111 11122233445565432 2 33344433321 1 12445889999999998887
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
.-..|+..++||.+.......-..+-+..+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 777777777777776665444444444443
No 423
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.10 E-value=3.5e-10 Score=105.60 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=112.6
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
.+++++++|+..-... +.++++|||++..|||+||+|-.|-|-+.|+..|+|+.+ +..|.
T Consensus 255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~----------------~~~G~- 314 (501)
T COG3845 255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK----------------PASGR- 314 (501)
T ss_pred CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc----------------cCCce-
Confidence 4679999998776532 447899999999999999999999999999999999973 33455
Q ss_pred eecCCCCc-cc------------------------cccCcccChHHHHHhcC-C-CC-CccHHHH----HHHHHhhccC-
Q 024225 155 LPMDGFHL-YL------------------------SQLDAMEDPKEAHARRG-A-PW-TFNPLLL----LNCLKNLRNQ- 201 (270)
Q Consensus 155 i~~dg~~~-~~------------------------~~l~~~~~~~~~~~~~g-~-~~-~~~~~~~----~~~l~~l~~~- 201 (270)
|.++|.+. .+ .+++..+|.-....... + .+ -.+.... .++++.+..-
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 55555543 10 01111111111110000 0 00 0122222 2333333322
Q ss_pred --CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccchh
Q 024225 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETYF 265 (270)
Q Consensus 202 --~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~~ 265 (270)
.......||||..|++..++.+...|++||+..|+-++|-...+.+.+.+. -.+.|+.+.|+.+
T Consensus 395 ~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil 467 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEIL 467 (501)
T ss_pred CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHH
Confidence 234456999999999999999999999999999999999866666655554 2367777776654
No 424
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=1.2e-10 Score=99.35 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=76.0
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+..|++++++.|++++|.||||+||||+++.|+++.- ..+-|.+.+ +.
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~G~~vp-----a~----- 65 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI----------------------MAQIGCFVP-----AE----- 65 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------------HHHcCCCcc-----hh-----
Confidence 5699999999999999999999999999999998762 111122211 00
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh-----hHHHHH
Q 024225 176 AHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~-----~~~~l~ 248 (270)
...+. .+.+++..+.... ......|+.++++. ......+.+++++++||++.+.|+. .+.-+.
T Consensus 66 -~~~l~--------~~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~ 135 (204)
T cd03282 66 -YATLP--------IFNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE 135 (204)
T ss_pred -hcCcc--------ChhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 00000 0111122222222 12334678888754 4445566789999999999999874 233333
Q ss_pred Hhhc---cceEEecccc
Q 024225 249 SMFD---EKCYATSFKE 262 (270)
Q Consensus 249 ~~~~---~~i~v~~~~~ 262 (270)
.+.+ ..+++||+.+
T Consensus 136 ~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 136 CLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHhcCCEEEEECChHH
Confidence 3332 3366666654
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.07 E-value=1e-10 Score=99.46 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++++..|++++|.||||||||||++.|++..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 346667789999999999999999999999654
No 426
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.06 E-value=1.6e-10 Score=107.03 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=86.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe-ecCCCCcc-------ccccCcccChHH
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-PMDGFHLY-------LSQLDAMEDPKE 175 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i-~~dg~~~~-------~~~l~~~~~~~~ 175 (270)
..+|.++||+|+||-||||.+|+|+|.+. |.-|..-+ +|.--.++ .+.|..+. ..++.+...+++
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 56799999999999999999999999995 55553111 11100000 00010000 000111111111
Q ss_pred ---HHHh-cC----CCCCccH-HHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh--
Q 024225 176 ---AHAR-RG----APWTFNP-LLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-- 242 (270)
Q Consensus 176 ---~~~~-~g----~~~~~~~-~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~-- 242 (270)
+-+. .| +....|. -.+.++.+.+.+. .+..+..+|||+-||++++.++..++++.+.|||...||-.
T Consensus 170 Vd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 170 VDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred HHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence 0000 00 0000000 1123444545444 25567899999999999999999999999999999999963
Q ss_pred --hHHHHHHhhc---cceEEeccc
Q 024225 243 --VWKDVSSMFD---EKCYATSFK 261 (270)
Q Consensus 243 --~~~~l~~~~~---~~i~v~~~~ 261 (270)
..+.++++.. ..+.|.||.
T Consensus 250 l~~ar~Irel~~~~k~ViVVEHDL 273 (591)
T COG1245 250 LNAARVIRELAEDGKYVIVVEHDL 273 (591)
T ss_pred HHHHHHHHHHhccCCeEEEEechH
Confidence 3334455554 446677765
No 427
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.06 E-value=2e-10 Score=96.03 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=43.2
Q ss_pred CCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccc
Q 024225 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFK 261 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~ 261 (270)
.+|+|+++++.++.++. .+++++|+|||...+|....+.+.+++.. .|+++|+.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 39999999999998874 58999999999999998766666666542 36666665
No 428
>PRK06547 hypothetical protein; Provisional
Probab=99.05 E-value=8.4e-10 Score=91.71 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=76.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
-....+|+|.|++|||||||++.|+..+. ..++.+|+++.....++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~~~~~--------------- 57 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGWHGLA--------------- 57 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceecccccCC---------------
Confidence 45567999999999999999999998862 22477787753211110
Q ss_pred CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEe
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYAT 258 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~ 258 (270)
.....+.+.+.. .+.....+ |+.....+... . ....++++|+||.+.+.+ .++++++ .+|||+
T Consensus 58 --~~~~~l~~~~l~--~g~~~~~~-yd~~~~~~~~~-~-~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld 125 (172)
T PRK06547 58 --AASEHVAEAVLD--EGRPGRWR-WDWANNRPGDW-V-SVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLD 125 (172)
T ss_pred --hHHHHHHHHHHh--CCCCceec-CCCCCCCCCCc-E-EeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEE
Confidence 011222222222 33333333 55554433221 1 223467999999988865 5788888 899999
Q ss_pred ccccchhhccC
Q 024225 259 SFKETYFNREA 269 (270)
Q Consensus 259 ~~~~~~~~r~~ 269 (270)
++.++++.|+.
T Consensus 126 ~~~~vr~~R~~ 136 (172)
T PRK06547 126 GPEALRKERAL 136 (172)
T ss_pred CCHHHHHHHHH
Confidence 99999998863
No 429
>COG4240 Predicted kinase [General function prediction only]
Probab=99.03 E-value=5.6e-10 Score=95.02 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=96.8
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCC-CceEEeecCCCCccccccC-cccChHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLD-AMEDPKEAHAR 179 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p-~~g~~i~~dg~~~~~~~l~-~~~~~~~~~~~ 179 (270)
++..+.-|+||.||-||||||+.-.|..++. . +. .+....++|++++...+.- ..++...+..-
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~----~----------kg~ert~~lSLDDlYlthadrl~La~q~npllq~ 110 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLA----A----------KGLERTATLSLDDLYLTHADRLRLARQVNPLLQT 110 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHH----H----------hcccceEEeehhhhhcchHHHHHHHHhcCchhcc
Confidence 3456789999999999999999999999884 1 22 2334489999987642211 11222234456
Q ss_pred cCCCCCccHHHHHHHHHhhccCC-CcCCCCCCc----ccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225 180 RGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 180 ~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~----g~~~rv~~~~~l~~~~~ilIld~~~~~lDe 241 (270)
+|.+.++|....+++++.+..+. .+.+|.|+. |..+|......+..+.+++|+||.+++..+
T Consensus 111 RGlpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 111 RGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred cCCCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 78999999999999999998775 568899987 999998877777778999999999988765
No 430
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.01 E-value=7.1e-10 Score=91.10 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=41.3
Q ss_pred CCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 209 FDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 209 ~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+|+|+++++.++.++.. .++++++|||...+|+.....+.+.+. ..|+++|+.+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 89999999999988865 679999999999999965555544443 2256666554
No 431
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.99 E-value=2.5e-09 Score=91.89 Aligned_cols=59 Identities=14% Similarity=-0.073 Sum_probs=43.4
Q ss_pred CcCCCCCCcccCChhhhhhhh----ccCCcEEEEeCCCCCCChhhHHHHHHhhc----c-----ceEEeccc
Q 024225 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-----KCYATSFK 261 (270)
Q Consensus 203 ~~~~~~~S~g~~~rv~~~~~l----~~~~~ilIld~~~~~lDe~~~~~l~~~~~----~-----~i~v~~~~ 261 (270)
...+..+|+||+|++..+..+ ..+++++++|||+..+|+.....+.+++. . .|+++++.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~ 192 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL 192 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh
Confidence 345569999999987765433 46899999999999999976666555542 2 27777764
No 432
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.97 E-value=3.6e-10 Score=97.67 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+..|+++++.++++++|.||||+||||+++.|+-.. +..+-|.+.+ +..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~g~~vp-----a~~---- 67 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV----------------------LMAQIGCFVP-----CDS---- 67 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH----------------------HHHHhCCCcC-----ccc----
Confidence 458999999999999999999999999999988542 0111121111 000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCC---CCCCChh
Q 024225 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG 242 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~---~~~lDe~ 242 (270)
...+ .+.+++..+...... ...+|.+++++...+..+ ..++.++|+||| +..+|..
T Consensus 68 --~~~~--------~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~ 128 (222)
T cd03285 68 --ADIP--------IVDCILARVGASDSQ-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGF 128 (222)
T ss_pred --EEEe--------ccceeEeeeccccch-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHH
Confidence 0000 011112222222222 356788888888887777 678999999999 7778874
No 433
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=4.7e-09 Score=107.78 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=108.1
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc-cCCCCC----CCCCceEEeecCCCCccccccC
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV----KPPDVATVLPMDGFHLYLSQLD 168 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~-~~~~~~----~~p~~g~~i~~dg~~~~~~~l~ 168 (270)
+..++|++.-+++|+.+-++||.|||||||++.|+|-+.++....|+ ..+++. +++....++..++.|... ++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eE
Confidence 56789999999999999999999999999999999998765555665 344431 122222335555555544 88
Q ss_pred cccChHHHHHhcCCCCCcc----HHHH----HHHHHhhccC-------CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 169 AMEDPKEAHARRGAPWTFN----PLLL----LNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~----~~~~----~~~l~~l~~~-------~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
+.+-.++..+-.+...-.+ .+.. ..+++-+++. .+...+-.|||+++|+..+..+..+++++..|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 8888887776665411111 1111 2345555543 23345688999999999999999999999999
Q ss_pred CCCCCCChhhHHHHH
Q 024225 234 GNYLFLDGGVWKDVS 248 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~ 248 (270)
++.-+||....-++.
T Consensus 286 e~t~GLDSsTal~ii 300 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQII 300 (1391)
T ss_pred cccccccHHHHHHHH
Confidence 999999984433333
No 434
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.92 E-value=8.5e-10 Score=84.22 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=32.0
Q ss_pred ccccccceecCCCeEEEEECCCCCCHHHHHHHHH
Q 024225 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (270)
Q Consensus 95 ~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~ 128 (270)
.+|++++|++++|++++|+||||||||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3789999999999999999999999999999975
No 435
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.91 E-value=6.7e-10 Score=104.48 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=42.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~ 164 (270)
+|++||+++++||+++|+||||||||||++ +|++ .|+.|..|.+||.++..
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~----------------~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR----------------KFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC----------------CCCCCCEEEECCEECCC
Confidence 789999999999999999999999999999 5665 45555337888877654
No 436
>PRK08233 hypothetical protein; Provisional
Probab=98.89 E-value=7.7e-09 Score=85.76 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=67.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC-CC
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW 184 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~ 184 (270)
++.+|+|.|++|||||||++.|+..+. . ..++.+|++..... + ........ .+. ..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~---------------~---~~~~~~d~~~~~~~--~--~~~~~~~~-~~~~~~ 58 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK---------------N---SKALYFDRYDFDNC--P--EDICKWID-KGANYS 58 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC---------------C---CceEEECCEEcccC--c--hhhhhhhh-ccCChh
Confidence 368999999999999999999999872 1 13466777643211 0 00000000 111 11
Q ss_pred CccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccch
Q 024225 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETY 264 (270)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~ 264 (270)
..+...+.+.++.+... ...+++|+|+++.... ..+.+.++..||++++.+++
T Consensus 59 ~~~~~~~~~~l~~~~~~-----------------------~~~~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~ 111 (182)
T PRK08233 59 EWVLTPLIKDIQELIAK-----------------------SNVDYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIA 111 (182)
T ss_pred hhhhHHHHHHHHHHHcC-----------------------CCceEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHH
Confidence 12222222222222111 0136788999887666 36778889999999999988
Q ss_pred hhcc
Q 024225 265 FNRE 268 (270)
Q Consensus 265 ~~r~ 268 (270)
+.|+
T Consensus 112 ~~R~ 115 (182)
T PRK08233 112 MARR 115 (182)
T ss_pred HHHH
Confidence 7763
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.86 E-value=2.6e-09 Score=98.33 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=83.0
Q ss_pred cccceecCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCc-cc
Q 024225 98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-ME 171 (270)
Q Consensus 98 ~~isl~i~~g-----eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~-~~ 171 (270)
.+..+.|..| |++..+|+||-|||||+++++|.++ |+.|. -++.-+..+....+.. .+
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~-------------e~p~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGG-------------EIPVLNVSYKPQKISPKRE 416 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccC-------------cccccceeccccccCcccc
Confidence 4445555554 6889999999999999999999884 44432 1222222211111111 01
Q ss_pred Ch--HHHHHhcCCCCCc-cHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHH
Q 024225 172 DP--KEAHARRGAPWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (270)
Q Consensus 172 ~~--~~~~~~~g~~~~~-~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~ 246 (270)
.. ...+... ..++ +.....++++.|... .+.....+|||+.||++++..+..++++.++|||.+.+|.+.+..
T Consensus 417 ~tvR~ll~~kI--r~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~ 494 (592)
T KOG0063|consen 417 GTVRQLLHTKI--RDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII 494 (592)
T ss_pred chHHHHHHHHh--HhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH
Confidence 00 1111111 1111 222234455554443 234556899999999999999999999999999999999865555
Q ss_pred HHHhhc
Q 024225 247 VSSMFD 252 (270)
Q Consensus 247 l~~~~~ 252 (270)
....++
T Consensus 495 Askvik 500 (592)
T KOG0063|consen 495 ASKVIK 500 (592)
T ss_pred HHHHHH
Confidence 444444
No 438
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.2e-08 Score=94.40 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=95.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeec
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~ 157 (270)
|.++|.+....+.. .+.+.++.|-.|..+||+||||-|||||++.|+-.--. .+|..-. +..
T Consensus 265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-------------IPpnIDv-LlC 326 (807)
T KOG0066|consen 265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-------------IPPNIDV-LLC 326 (807)
T ss_pred ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-------------CCCCCce-Eee
Confidence 66677666654422 56889999999999999999999999999999876311 1333322 222
Q ss_pred CCCCccccccCcc-----------cChHHHHHhcCCC---CC-------------------ccHHHHHHHHHhhccCC--
Q 024225 158 DGFHLYLSQLDAM-----------EDPKEAHARRGAP---WT-------------------FNPLLLLNCLKNLRNQG-- 202 (270)
Q Consensus 158 dg~~~~~~~l~~~-----------~~~~~~~~~~g~~---~~-------------------~~~~~~~~~l~~l~~~~-- 202 (270)
......+ ..++. ...+...+..+-. .. ....+...++..|++..
T Consensus 327 EQEvvad-~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 327 EQEVVAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred eeeeeec-CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence 1111100 00100 0000000000100 00 01122233444444432
Q ss_pred -CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh--hhH--HHHHHhhccceEEeccc
Q 024225 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--GVW--KDVSSMFDEKCYATSFK 261 (270)
Q Consensus 203 -~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe--~~~--~~l~~~~~~~i~v~~~~ 261 (270)
+...-.||||=+-|+.+++++-+.|-+|++|+|+..||- .+| ..+...-+..+.|+||.
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 233448999999999999999999999999999888874 222 23333334556667765
No 439
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=8.1e-09 Score=92.06 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=44.1
Q ss_pred CCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
.+|+|+++|+.++.++.. .++++++|||+..+|......+.+++.. .|+++|+.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 489999999999975433 8999999999999999888877776652 367777653
No 440
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.75 E-value=5.9e-09 Score=89.77 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.3
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..|+++++++ ++++|.|||||||||++|.|++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 45889999876 999999999999999999998764
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.69 E-value=1.8e-08 Score=89.52 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=33.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~ 162 (270)
.-++|+||||||||||++.|+|++ .|..|. +.++|..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~----------------~~~~G~-i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL----------------STGISQ-LGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc----------------CCCCce-EEECCEEe
Confidence 678999999999999999999999 677888 88888754
No 442
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.64 E-value=6.8e-08 Score=83.48 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=33.0
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+..|+++.+.+|++++|.||||+||||+++.|++.
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999999999999994
No 443
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.63 E-value=3.4e-08 Score=99.34 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=65.5
Q ss_pred cceecCCC-eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH
Q 024225 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (270)
Q Consensus 100 isl~i~~g-eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~ 178 (270)
+++++..+ ++++|.||||+|||||+|.|++..- .+..|..++...... +.... ....
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~~----~~~~d---~i~~ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHSE----IPYFE---EIFA 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCcccc----ccchh---heee
Confidence 67888877 9999999999999999999999831 122222122211000 00000 0000
Q ss_pred hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (270)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l 247 (270)
.++ +. .++. .....||.++++...+...+ ..+.++|+||+..++|+.....+
T Consensus 372 ~i~-----~~---~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al 423 (771)
T TIGR01069 372 DIG-----DE---QSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSAL 423 (771)
T ss_pred ecC-----hH---hHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence 011 00 1111 12346888888877765544 57899999999999998655544
No 444
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.62 E-value=1.4e-07 Score=101.02 Aligned_cols=73 Identities=11% Similarity=-0.042 Sum_probs=55.6
Q ss_pred HHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA 257 (270)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v 257 (270)
.+++++.+++| .....+.+|||+.||+-++..+... +.+.|+|||+.+|+..-.+.+.+.++ ..|.|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 35566666665 2345679999999999999988654 57999999999999876666666655 44888
Q ss_pred eccccc
Q 024225 258 TSFKET 263 (270)
Q Consensus 258 ~~~~~~ 263 (270)
+|+.|.
T Consensus 1759 eH~~~~ 1764 (1809)
T PRK00635 1759 DHDPAL 1764 (1809)
T ss_pred eCCHHH
Confidence 887754
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.59 E-value=7.2e-08 Score=82.82 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=25.7
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+.+.-..+.+++|.||||+|||||+|.|+..
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHHH
Confidence 455544333489999999999999999999853
No 446
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=4.6e-07 Score=80.53 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=43.5
Q ss_pred CCCcccCChhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc--ceEEeccc
Q 024225 208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KCYATSFK 261 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~--~i~v~~~~ 261 (270)
.+|.|+++++.++.+++ ..++++++|||+..+|+..++.+.+.+.. .+++++..
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~ 247 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTD 247 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCC
Confidence 46999999999998764 58899999999999999988888888852 34444443
No 447
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.50 E-value=3.6e-07 Score=76.61 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=83.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCcc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 187 (270)
-+|||.|-+-||||||++.|..... . +.+|.+|+|+....+.....+ ......+..+.+
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~----------------~--~~lIhqDDFyKp~~Ei~v~~~---n~~~wd~~esLd 63 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFP----------------G--CSLIHQDDFYKPENEIEVDYN---NIDNWDLLESLD 63 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHcc----------------C--CeeeccccccCchhhhhcccC---Ccchhcchhhhh
Confidence 4899999999999999999999983 2 457999999877655544332 112333344445
Q ss_pred HHHHHHHHHhhccCCCcC--CC-------CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEe
Q 024225 188 PLLLLNCLKNLRNQGSVY--AP-------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYAT 258 (270)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~--~~-------~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~ 258 (270)
...+++.+.......... .+ .|.+.-++. ..-..+..++|+||-.+..-+ .+.++++..|+++
T Consensus 64 m~~fl~~ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~----p~~~~~d~~im~~ 135 (225)
T KOG3308|consen 64 MEKFLEKIATWLDSRHNAPEAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYK----PQVDLFDRIIMLT 135 (225)
T ss_pred HHHHHHHHHHHhcCccccchHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecc----hhhhhhhhheeee
Confidence 555544443322221111 00 111111111 112235779999998888874 6677899999999
Q ss_pred ccccchhhccC
Q 024225 259 SFKETYFNREA 269 (270)
Q Consensus 259 ~~~~~~~~r~~ 269 (270)
++.++...||.
T Consensus 136 ~~y~~~krRr~ 146 (225)
T KOG3308|consen 136 LDYETCKRRRE 146 (225)
T ss_pred ccHHHHHHhhc
Confidence 99998888874
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.48 E-value=1.2e-07 Score=79.69 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=32.9
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
=+.+.++.|+.++|+||||||||||++.|++++. ++.|.
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~ 55 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI 55 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 3456688999999999999999999999999984 44444
No 449
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.4e-06 Score=86.19 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=44.1
Q ss_pred CCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 206 APSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 206 ~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
...+|||+.||+-++..+.... -+.|+|||+-+|-..-.+++.+.++ ..|.|.|+.|+
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdV 887 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDV 887 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccce
Confidence 4589999999999998886655 6999999999997644444444444 44778887764
No 450
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.47 E-value=3e-08 Score=83.21 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=25.4
Q ss_pred CCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhh
Q 024225 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (270)
Q Consensus 206 ~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~ 243 (270)
...|+.++++. ........+++++++||++..+|+..
T Consensus 59 ~s~fs~~~~~l-~~~l~~~~~~~llllDEp~~g~d~~~ 95 (185)
T smart00534 59 LSTFMVEMKET-ANILKNATENSLVLLDELGRGTSTYD 95 (185)
T ss_pred ccHHHHHHHHH-HHHHHhCCCCeEEEEecCCCCCCHHH
Confidence 34666666653 33333334789999999999999863
No 451
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.47 E-value=2e-07 Score=79.95 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 207 PSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 207 ~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..+|+||+..++++..++ .+.+++|+|++...||+..+..+.+++.
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~ 184 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLK 184 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 389999999999885543 2677999999999999988888777776
No 452
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.46 E-value=3.7e-07 Score=79.33 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRIN 132 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTL-lk~L~gll~ 132 (270)
+.+.++.+.+++ .+++|+++.|.|+|||||||| ++.+.+.++
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456677776654 168899999999999999999 588998873
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.42 E-value=4.2e-07 Score=76.20 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++++|+||||||||||+++|++.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999987
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.42 E-value=7.8e-07 Score=84.79 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=51.1
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~ 173 (270)
+.++.+.++.+++|.+++|+||||+||||++..|++.+. ...| .....++..|.+. ..+.+..
T Consensus 243 l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G---------~~kV~LI~~Dt~R-----igA~EQL 305 (484)
T PRK06995 243 LPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG---------ASKVALLTTDSYR-----IGGHEQL 305 (484)
T ss_pred HhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC---------CCeEEEEeCCccc-----hhHHHHH
Confidence 334566777788999999999999999999999999873 1111 1133457777653 4455666
Q ss_pred HHHHHhcCCC
Q 024225 174 KEAHARRGAP 183 (270)
Q Consensus 174 ~~~~~~~g~~ 183 (270)
......+|++
T Consensus 306 r~~AeilGVp 315 (484)
T PRK06995 306 RIYGKILGVP 315 (484)
T ss_pred HHHHHHhCCC
Confidence 6666777764
No 455
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.42 E-value=3.7e-07 Score=62.64 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=29.6
Q ss_pred ccccceecCC-CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 97 l~~isl~i~~-geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++..+++.+ |.++.|.|+|||||||++..|.-++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556677765 5799999999999999999999887
No 456
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=1.4e-06 Score=81.74 Aligned_cols=95 Identities=21% Similarity=0.265 Sum_probs=58.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
+++|++++|+||||+||||+++.|++.... . ..+..+.++..|++.+ ...+........+|++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~---~---------~~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVI---R---------HGADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHH---h---------cCCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence 578999999999999999999999986410 0 0234556688888753 3334444556677775
Q ss_pred CC--ccHHHHHHHHHhhccCCCcCCCCCCcccCChh
Q 024225 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (270)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv 217 (270)
.. .+...+...+..+.....+.+.. .|+.++.
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD 284 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence 32 23333444455554443344333 3666653
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=4.6e-07 Score=85.42 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=45.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.++.+++++.|... +.+++.++ .+.+|++++|+||||||||||+++|+++.
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467888999999753 44667775 89999999999999999999999999987
No 458
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=6e-07 Score=85.52 Aligned_cols=150 Identities=25% Similarity=0.361 Sum_probs=107.7
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH---h
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---R 179 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~---~ 179 (270)
+....-++|+.|.++|||||.+..+...+.+.+. .+ .+.....+..|-++. .++. ++...... .
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~-------~~--~~~~v~~ls~~~fY~---~lt~-~~~~~a~~~~~~ 106 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIER-------DG--RQPQVVLLSQDSFYK---VLTS-EELAKAQEGKYN 106 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhh-------cc--CCCeEEEeecHHHHH---hhch-HHHHHhhhcccc
Confidence 3567789999999999999988888777732221 11 232333244432221 1222 22222221 2
Q ss_pred cCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259 (270)
Q Consensus 180 ~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~ 259 (270)
+..+..++.+.....++++..+..+.+|.|++-..++......+...++++++++.+.+.| ++++++++.++|+|+
T Consensus 107 f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~ 182 (473)
T KOG4203|consen 107 FDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDT 182 (473)
T ss_pred ccCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEec
Confidence 3336778888888889999999999999999888787666555667889999999999999 599999999999999
Q ss_pred cccchhhccC
Q 024225 260 FKETYFNREA 269 (270)
Q Consensus 260 ~~~~~~~r~~ 269 (270)
+.|.++.|++
T Consensus 183 ~~d~rla~ri 192 (473)
T KOG4203|consen 183 DADVRLARRI 192 (473)
T ss_pred CcchhhHHHH
Confidence 9999998875
No 459
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.32 E-value=2.1e-06 Score=71.60 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|++++|+|+||||||||+++|++++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999998
No 460
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.29 E-value=1.9e-06 Score=60.48 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|.|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 461
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.29 E-value=1.5e-06 Score=73.04 Aligned_cols=124 Identities=27% Similarity=0.383 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccC-cc-cCh-HHHHHhcCCC
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD-AM-EDP-KEAHARRGAP 183 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~-~~-~~~-~~~~~~~g~~ 183 (270)
+-++|+.||.|||||||.-.|---+.+ .-| ..-.++. +++|++++....-- .. .++ ..+.+.+|.+
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~---Ky~-------~E~s~~~-~SvDDFYLThe~Q~eL~k~npnN~Llq~RGla 99 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTK---KYI-------QEYSSAT-ISVDDFYLTHEGQAELRKKNPNNALLQYRGLA 99 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHH---Hhc-------cccceEE-EEecceeeechhHHHHHhhCCCChhhccCCCC
Confidence 469999999999999998776554420 000 0224455 99999986532110 00 011 1234567888
Q ss_pred CCccHHHHHHHHHhhccC----CCcCCCCCC----cccCChhhhhhhhcc-CCcEEEEeCCCCCCCh
Q 024225 184 WTFNPLLLLNCLKNLRNQ----GSVYAPSFD----HGVGDPVEDDILVGL-QHKVVIVDGNYLFLDG 241 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~----~~~~~~~~S----~g~~~rv~~~~~l~~-~~~ilIld~~~~~lDe 241 (270)
.+.|.....++++.+... ..+.+|.|+ +|.++|......... +..++|+||.+++..+
T Consensus 100 GtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P 166 (282)
T KOG2878|consen 100 GTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP 166 (282)
T ss_pred CcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence 888988888887766543 346778775 467777776655443 5779999999998765
No 462
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.28 E-value=1.8e-06 Score=82.96 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=33.6
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..++|+.+.+ +|.+++|.|||||||||+++.|+..+
T Consensus 272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999987 88999999999999999999999987
No 463
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.26 E-value=8.2e-07 Score=82.44 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred eEEeccchhhhhhhhccccccc-----------ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~-----------~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-+.++||++.|++. + .+|+ |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 48999999999863 2 2565 9999999999999999999999999999999874
No 464
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.25 E-value=2e-06 Score=74.20 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.4
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+-.|++|++++|++++|.||||+||||+++.+++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 348999999999999999999999999999999975
No 465
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=9.7e-07 Score=83.08 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=35.6
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.+++++ |++.+|++++|+|+||+|||||+++|+|+.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 5688999 9999999999999999999999999999873
No 466
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.19 E-value=9.9e-07 Score=75.37 Aligned_cols=42 Identities=7% Similarity=-0.057 Sum_probs=35.8
Q ss_pred cCChhhhhhhhccCCcEEEEeCCC-----CCCChhhHHHHHHhhccc
Q 024225 213 VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK 254 (270)
Q Consensus 213 ~~~rv~~~~~l~~~~~ilIld~~~-----~~lDe~~~~~l~~~~~~~ 254 (270)
+..+..++..+..+++++++|||+ ..+|+...+.+.+++...
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 445577788888899999999999 999999888888888754
No 467
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.16 E-value=1.1e-06 Score=88.71 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=32.9
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHH
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l 247 (270)
....||.+++++..+...+ ..+.++++||++.+.|+.....+
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~al 428 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAAL 428 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHH
Confidence 3457889999988877666 57889999999999998544433
No 468
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.15 E-value=2.6e-06 Score=80.13 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=80.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++-+.+++.|... +.+++. .+.+.+|+.++|+|+||+|||||+++|++.. .++.+. +.
T Consensus 130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~----------------~~~~gv-I~ 188 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA----------------KADINV-IS 188 (432)
T ss_pred chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC----------------CCCeEE-EE
Confidence 45566777777542 346676 5999999999999999999999999999987 566665 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhc-------cC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG-------LQ 226 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~-------~~ 226 (270)
..|..- .+-.++.....+ .-++.. -......|.+++.+++...... .+
T Consensus 189 ~iGerg-------~ev~e~~~~~l~---------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 189 LVGERG-------REVKDFIRKELG---------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred eCCCCc-------ccHHHHHHHHhh---------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555421 111111111111 000000 0223455677777777664332 35
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHh
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSM 250 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~ 250 (270)
+-++++|.++-++|. .+++...
T Consensus 247 ~VLlilDslTr~a~A--~reisl~ 268 (432)
T PRK06793 247 NVLLMMDSVTRFADA--RRSVDIA 268 (432)
T ss_pred cEEEEecchHHHHHH--HHHHHHH
Confidence 668999999999985 3444433
No 469
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.15 E-value=1.5e-05 Score=70.07 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.2
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
|.=+.+.+|+.++|+||+|+|||||++.|...+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3446789999999999999999999999999874
No 470
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.14 E-value=2.2e-06 Score=77.94 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=35.0
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 4477888 9999999999999999999999999999883
No 471
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.12 E-value=2.2e-06 Score=72.69 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++|++++|+||||||||||++.|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999986
No 472
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.12 E-value=2.1e-06 Score=80.88 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=44.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.++.+.++..|... +.+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 180 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD 180 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC
Confidence 346667777777532 4578999 9999999999999999999999999999873
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=1.4e-05 Score=61.67 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999983
No 474
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=2.6e-06 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=34.7
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 4477999 999999999999999999999999999987
No 475
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=4.9e-06 Score=83.02 Aligned_cols=90 Identities=23% Similarity=0.289 Sum_probs=57.2
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~ 173 (270)
+.++.+.++.+++|++++++||||+||||++..|++.+. ... ......++..|.+. .-..+..
T Consensus 172 l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~---------G~kkV~lit~Dt~R-----igA~eQL 234 (767)
T PRK14723 172 LPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---ARE---------GADQLALLTTDSFR-----IGALEQL 234 (767)
T ss_pred hhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHc---------CCCeEEEecCcccc-----hHHHHHH
Confidence 335577888888899999999999999999999999872 111 11234446666553 2233444
Q ss_pred HHHHHhcCCCC--CccHHHHHHHHHhhcc
Q 024225 174 KEAHARRGAPW--TFNPLLLLNCLKNLRN 200 (270)
Q Consensus 174 ~~~~~~~g~~~--~~~~~~~~~~l~~l~~ 200 (270)
.......|++. ..+...+.+.++.+..
T Consensus 235 ~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 235 RIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred HHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 44556677633 2345555566665553
No 476
>PRK08149 ATP synthase SpaL; Validated
Probab=98.10 E-value=2.6e-06 Score=80.05 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=34.6
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC
Confidence 4578999 999999999999999999999999999986
No 477
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.06 E-value=3.1e-05 Score=68.23 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=30.0
Q ss_pred cccccceecCCCe-EEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~ge-ivgL~GpnGsGKSTLlk~L~gll 131 (270)
++..+...++++. ++.|.||+|+|||||++.+...+
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4466666666655 89999999999999999999887
No 478
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.05 E-value=5.2e-05 Score=63.27 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=27.6
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..++|++++|.|++||||||+++.|.+.+.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999983
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.04 E-value=3.9e-06 Score=69.63 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999987
No 480
>PRK08118 topology modulation protein; Reviewed
Probab=98.04 E-value=8.8e-06 Score=67.23 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.|.|+||+|||||||++.|+..++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999873
No 481
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.02 E-value=3.1e-06 Score=81.25 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=45.8
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
+.|+++.|+... +++++++.+..|+.++|+||||+|||||++.|.|++. |.+|.
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE 240 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence 347788887644 6689999999999999999999999999999999995 55554
No 482
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.01 E-value=5.6e-06 Score=78.10 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=34.8
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 4578999 999999999999999999999999999987
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.00 E-value=3.9e-06 Score=69.57 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++++|+||||||||||++.|++.+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999976
No 484
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.00 E-value=7.2e-06 Score=76.06 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=46.3
Q ss_pred CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHH----HHHHhhc---cceEEeccccc
Q 024225 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD---EKCYATSFKET 263 (270)
Q Consensus 203 ~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~----~l~~~~~---~~i~v~~~~~~ 263 (270)
+.....+|+|+.||.+++.+....+++-+.||+-.-||-..+- .++.++. +.|.|.||.++
T Consensus 208 ~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 208 DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred HhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence 4556789999999999999998999999999999999953222 2333333 55777877743
No 485
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.99 E-value=4.9e-06 Score=75.42 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=30.1
Q ss_pred cceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++.+..|+.++|+||+|||||||++.|++++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 56778999999999999999999999999998
No 486
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.98 E-value=6.6e-06 Score=77.70 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=34.9
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|++..
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999 999999999999999999999999999987
No 487
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.96 E-value=6.2e-06 Score=78.06 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=34.5
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|+++.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5577888 999999999999999999999999999987
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=9.3e-06 Score=68.76 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=26.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-++|++++|+|+||||||||++.|.+.+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999999999988
No 489
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.95 E-value=3.1e-06 Score=71.74 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=30.1
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
..++++|-|+++=. .+...+|+.|||+++.++++.|.
T Consensus 107 ~~~vv~e~pll~E~-----~~~~~~D~ii~V~a~~e~r~~Rl 143 (195)
T PRK14730 107 NPIVVLVIPLLFEA-----KLTDLCSEIWVVDCSPEQQLQRL 143 (195)
T ss_pred CCEEEEEeHHhcCc-----chHhCCCEEEEEECCHHHHHHHH
Confidence 46888998888743 56668999999999999988774
No 490
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.94 E-value=8.5e-06 Score=76.68 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.3
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++.+ +.+.+|++++|+|+||+|||||+++|++..
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 5566666 999999999999999999999999999876
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.93 E-value=1.2e-05 Score=73.17 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+|++++|+||||+||||++..|++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999999983
No 492
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.93 E-value=8.6e-06 Score=62.88 Aligned_cols=23 Identities=52% Similarity=0.999 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|++||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 493
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.93 E-value=1.4e-05 Score=72.13 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=34.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++++++++..++++++|+|++|||||||+..|.+.+.
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999874
No 494
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.92 E-value=9.7e-06 Score=76.17 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=34.5
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++++ +.+.+|++++|+|+||+|||||+++|++..
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578898 999999999999999999999999999987
No 495
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.92 E-value=3.6e-06 Score=70.18 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.9
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
.++++|.|+++-. .+.+.+|..|||+++.++++.|.
T Consensus 104 ~~vive~plL~e~-----~~~~~~D~vv~V~a~~~~ri~Rl 139 (179)
T cd02022 104 KVVVLDIPLLFET-----GLEKLVDRVIVVDAPPEIQIERL 139 (179)
T ss_pred CEEEEEehHhhcC-----CcHHhCCeEEEEECCHHHHHHHH
Confidence 6888998887664 45678999999999999998874
No 496
>PRK05922 type III secretion system ATPase; Validated
Probab=97.92 E-value=1.2e-05 Score=75.76 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=33.2
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++.+ +.+.+|+.++|+|+||+|||||+++|++..
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 4466664 999999999999999999999999999987
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=66.17 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++|++++|+|++||||||+++.|++.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999983
No 498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.91 E-value=8.5e-06 Score=76.58 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=33.6
Q ss_pred cccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 94 v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.++ |.+|.+.+|++++|+|+||+|||||+++|+++.+
T Consensus 128 i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 128 VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 3354 4699999999999999999999999999999873
No 499
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=3.9e-05 Score=68.20 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=38.0
Q ss_pred EEeccchhhhhhhhcccccccccceecC-------CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~-------~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+++.+.++.|+..-+. +++++++.++ +|++++++|+||+||||+++.|++.+.
T Consensus 41 i~f~~~~~~~~~vl~~--v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 41 VKFENATMITEEVIEY--ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred EEecCCCccccHHHHH--HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5555555555432111 3477777765 458999999999999999999999873
No 500
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.88 E-value=1.1e-05 Score=67.21 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.7
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++++.+++.+| +.+|.||||+||||++.+|.-.+.
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 346666777555 999999999999999999999884
Done!