Query 024225
Match_columns 270
No_of_seqs 241 out of 1419
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 3.4E-30 1.2E-34 236.9 7.0 181 76-265 2-198 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 4.4E-30 1.5E-34 234.5 6.3 180 76-265 3-203 (359)
3 3tui_C Methionine import ATP-b 100.0 1.6E-29 5.4E-34 231.2 8.7 185 74-264 21-227 (366)
4 2pcj_A ABC transporter, lipopr 100.0 2.6E-29 8.8E-34 216.2 6.4 179 76-263 3-202 (224)
5 2it1_A 362AA long hypothetical 100.0 4.4E-29 1.5E-33 228.5 7.6 180 76-264 2-197 (362)
6 3tif_A Uncharacterized ABC tra 100.0 4.5E-29 1.5E-33 216.1 7.2 182 77-263 1-208 (235)
7 1g29_1 MALK, maltose transport 100.0 3.9E-29 1.3E-33 229.8 7.1 180 76-264 2-203 (372)
8 1v43_A Sugar-binding transport 100.0 5.4E-29 1.8E-33 228.7 8.0 181 75-264 9-205 (372)
9 2yyz_A Sugar ABC transporter, 100.0 3E-29 1E-33 229.4 6.0 180 76-264 2-197 (359)
10 1z47_A CYSA, putative ABC-tran 100.0 6.8E-29 2.3E-33 226.6 8.0 180 76-264 13-209 (355)
11 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-28 3.7E-33 218.4 8.5 180 76-264 6-207 (275)
12 1oxx_K GLCV, glucose, ABC tran 99.9 7.9E-29 2.7E-33 226.4 5.5 182 76-264 2-204 (353)
13 2olj_A Amino acid ABC transpor 99.9 1.7E-28 5.9E-33 215.8 7.3 179 76-263 23-221 (263)
14 1vpl_A ABC transporter, ATP-bi 99.9 1.5E-28 5.2E-33 215.4 6.9 180 74-263 12-208 (256)
15 1sgw_A Putative ABC transporte 99.9 6.5E-28 2.2E-32 206.0 9.6 176 76-263 9-195 (214)
16 1g6h_A High-affinity branched- 99.9 2.9E-28 9.8E-33 213.7 7.2 181 75-264 5-216 (257)
17 4g1u_C Hemin import ATP-bindin 99.9 3.2E-28 1.1E-32 214.5 7.0 178 75-263 9-210 (266)
18 1b0u_A Histidine permease; ABC 99.9 3.5E-28 1.2E-32 213.8 6.9 178 77-263 6-215 (262)
19 3d31_A Sulfate/molybdate ABC t 99.9 6.1E-28 2.1E-32 220.0 8.2 173 78-264 2-191 (348)
20 1ji0_A ABC transporter; ATP bi 99.9 2.5E-27 8.5E-32 205.8 8.9 178 76-263 5-201 (240)
21 2yz2_A Putative ABC transporte 99.9 3.3E-27 1.1E-31 208.0 8.7 182 77-263 2-200 (266)
22 2ihy_A ABC transporter, ATP-bi 99.9 9.6E-28 3.3E-32 212.8 4.9 181 76-263 20-225 (279)
23 2nq2_C Hypothetical ABC transp 99.9 2.8E-27 9.7E-32 207.0 6.5 174 76-263 3-191 (253)
24 2d2e_A SUFC protein; ABC-ATPas 99.9 1.1E-26 3.6E-31 202.9 9.4 180 76-264 2-206 (250)
25 2zu0_C Probable ATP-dependent 99.9 1.7E-26 5.7E-31 203.6 9.0 183 74-263 17-226 (267)
26 2ff7_A Alpha-hemolysin translo 99.9 1.2E-26 4.2E-31 202.3 7.7 173 77-263 7-206 (247)
27 2ixe_A Antigen peptide transpo 99.9 1.3E-26 4.5E-31 204.7 7.3 176 76-263 15-219 (271)
28 2onk_A Molybdate/tungstate ABC 99.9 6.1E-27 2.1E-31 203.3 3.8 171 78-263 2-189 (240)
29 2cbz_A Multidrug resistance-as 99.9 3.2E-26 1.1E-30 198.4 6.4 169 76-263 2-191 (237)
30 3nh6_A ATP-binding cassette SU 99.9 2.4E-26 8.3E-31 206.1 4.6 172 77-263 53-251 (306)
31 2pjz_A Hypothetical protein ST 99.9 9.2E-26 3.2E-30 198.4 8.1 174 77-263 1-187 (263)
32 1mv5_A LMRA, multidrug resista 99.9 1.4E-25 4.9E-30 195.0 8.8 169 78-262 2-199 (243)
33 2pze_A Cystic fibrosis transme 99.9 1E-25 3.5E-30 194.2 7.8 167 76-263 5-192 (229)
34 2ghi_A Transport protein; mult 99.9 1.5E-25 5.1E-30 196.8 6.1 174 76-263 16-216 (260)
35 3gd7_A Fusion complex of cysti 99.9 6.3E-26 2.1E-30 209.5 3.7 171 76-262 18-215 (390)
36 2qi9_C Vitamin B12 import ATP- 99.9 2.5E-24 8.5E-29 187.8 9.5 168 77-263 4-195 (249)
37 3aez_A Pantothenate kinase; tr 99.9 4.2E-25 1.4E-29 198.7 1.5 173 77-267 43-234 (312)
38 3b5x_A Lipid A export ATP-bind 99.9 1.7E-23 5.7E-28 202.9 8.8 174 76-262 340-540 (582)
39 4a82_A Cystic fibrosis transme 99.9 7.9E-24 2.7E-28 205.0 5.4 173 77-263 339-538 (578)
40 2bbs_A Cystic fibrosis transme 99.9 1.4E-23 4.7E-28 187.0 6.0 162 76-263 39-221 (290)
41 3b60_A Lipid A export ATP-bind 99.9 1.6E-23 5.4E-28 203.1 6.8 175 76-263 340-541 (582)
42 3qf4_A ABC transporter, ATP-bi 99.9 1.4E-23 4.9E-28 203.6 6.0 168 77-263 341-540 (587)
43 3qf4_B Uncharacterized ABC tra 99.9 1.6E-23 5.4E-28 203.7 6.3 161 77-263 354-552 (598)
44 2yl4_A ATP-binding cassette SU 99.9 1.7E-23 5.8E-28 203.4 4.7 173 78-262 342-543 (595)
45 3bk7_A ABC transporter ATP-bin 99.8 2.4E-21 8E-26 188.3 9.7 169 76-263 356-534 (607)
46 3ozx_A RNAse L inhibitor; ATP 99.8 1.4E-21 4.9E-26 187.5 7.9 172 76-264 268-449 (538)
47 1yqt_A RNAse L inhibitor; ATP- 99.8 2.6E-21 8.7E-26 185.9 8.7 169 76-263 286-464 (538)
48 3g5u_A MCG1178, multidrug resi 99.8 2.3E-21 7.8E-26 202.4 4.8 162 77-262 387-586 (1284)
49 2iw3_A Elongation factor 3A; a 99.8 3.2E-21 1.1E-25 194.5 5.6 180 76-263 670-960 (986)
50 3g5u_A MCG1178, multidrug resi 99.8 3.8E-21 1.3E-25 200.8 5.8 174 77-263 1030-1232(1284)
51 3bk7_A ABC transporter ATP-bin 99.8 6.7E-22 2.3E-26 192.2 -0.1 167 81-263 95-290 (607)
52 3tqc_A Pantothenate kinase; bi 99.8 1E-21 3.5E-26 177.0 0.8 157 96-268 75-244 (321)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 9.8E-22 3.4E-26 188.8 0.6 169 78-262 21-219 (538)
54 4f4c_A Multidrug resistance pr 99.8 2.3E-21 7.8E-26 202.9 2.8 172 77-261 1076-1276(1321)
55 4f4c_A Multidrug resistance pr 99.8 5.6E-21 1.9E-25 200.0 4.7 162 77-262 415-614 (1321)
56 2jeo_A Uridine-cytidine kinase 99.8 3.8E-20 1.3E-24 160.4 8.0 156 95-268 13-171 (245)
57 3j16_B RLI1P; ribosome recycli 99.8 1.1E-20 3.7E-25 183.6 4.0 172 82-263 82-283 (608)
58 3j16_B RLI1P; ribosome recycli 99.8 1.3E-19 4.4E-24 176.0 11.1 167 81-264 350-531 (608)
59 3c8u_A Fructokinase; YP_612366 99.8 1.3E-20 4.4E-25 159.4 2.6 147 104-268 19-165 (208)
60 1sq5_A Pantothenate kinase; P- 99.8 1.2E-20 4.2E-25 169.2 1.8 168 77-268 37-232 (308)
61 2iw3_A Elongation factor 3A; a 99.8 1.7E-19 5.7E-24 182.1 8.7 163 77-262 435-606 (986)
62 2ga8_A Hypothetical 39.9 kDa p 99.8 5.5E-20 1.9E-24 167.0 2.5 173 96-268 11-306 (359)
63 3ux8_A Excinuclease ABC, A sub 99.8 3.5E-19 1.2E-23 175.2 8.4 70 194-263 185-266 (670)
64 3ozx_A RNAse L inhibitor; ATP 99.7 1.9E-19 6.6E-24 172.7 1.2 167 82-263 4-199 (538)
65 1odf_A YGR205W, hypothetical 3 99.7 5.4E-18 1.8E-22 150.8 3.1 148 104-267 28-219 (290)
66 3ux8_A Excinuclease ABC, A sub 99.7 3.7E-17 1.3E-21 160.7 7.7 72 192-263 524-608 (670)
67 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.1E-19 3.7E-24 171.3 -10.1 167 76-262 117-299 (460)
68 4gp7_A Metallophosphoesterase; 99.7 7.1E-18 2.4E-22 138.4 1.9 124 99-264 1-162 (171)
69 3asz_A Uridine kinase; cytidin 99.7 8.6E-17 2.9E-21 135.4 6.8 138 104-268 3-142 (211)
70 3b85_A Phosphate starvation-in 99.6 7.7E-17 2.6E-21 136.7 3.7 140 85-262 8-159 (208)
71 2v9p_A Replication protein E1; 99.6 5.3E-17 1.8E-21 145.2 0.6 131 77-249 101-234 (305)
72 2vf7_A UVRA2, excinuclease ABC 99.6 9.1E-16 3.1E-20 153.3 8.0 73 191-263 710-795 (842)
73 2r6f_A Excinuclease ABC subuni 99.6 4.1E-15 1.4E-19 149.4 10.8 72 192-263 826-910 (972)
74 2ygr_A Uvrabc system protein A 99.6 1.4E-14 4.9E-19 145.9 13.2 72 192-263 844-928 (993)
75 1tq4_A IIGP1, interferon-induc 99.6 7.9E-17 2.7E-21 149.6 -4.0 137 96-250 38-208 (413)
76 4aby_A DNA repair protein RECN 99.5 1.8E-15 6E-20 140.2 4.1 54 209-262 296-357 (415)
77 3pih_A Uvrabc system protein A 99.5 2.3E-14 8E-19 144.3 10.6 74 190-263 784-870 (916)
78 1ye8_A Protein THEP1, hypothet 99.4 2.8E-15 9.7E-20 124.0 -2.3 55 205-259 73-138 (178)
79 3b9q_A Chloroplast SRP recepto 99.4 1.4E-14 4.9E-19 129.4 1.7 139 98-261 91-257 (302)
80 2pt7_A CAG-ALFA; ATPase, prote 99.4 3.1E-14 1.1E-18 128.7 3.5 123 80-262 151-276 (330)
81 1htw_A HI0065; nucleotide-bind 99.4 4.9E-14 1.7E-18 114.4 3.7 56 78-141 8-63 (158)
82 1z6g_A Guanylate kinase; struc 99.4 1.1E-14 3.8E-19 124.0 -3.9 36 96-131 12-47 (218)
83 1rz3_A Hypothetical protein rb 99.4 2.2E-13 7.4E-18 114.2 3.7 142 103-269 18-162 (201)
84 2og2_A Putative signal recogni 99.4 1.6E-13 5.4E-18 125.3 2.5 139 98-261 148-314 (359)
85 3sop_A Neuronal-specific septi 99.3 5.7E-13 2E-17 117.1 5.2 131 109-252 4-139 (270)
86 1e69_A Chromosome segregation 99.3 1.1E-12 3.9E-17 117.8 7.0 56 206-261 217-282 (322)
87 3szr_A Interferon-induced GTP- 99.3 6.9E-14 2.3E-18 136.1 -1.6 164 77-263 10-198 (608)
88 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 1.8E-12 6.2E-17 118.6 7.0 59 205-263 276-347 (365)
89 2eyu_A Twitching motility prot 99.3 3.8E-12 1.3E-16 111.3 5.8 113 78-250 6-119 (261)
90 1tf7_A KAIC; homohexamer, hexa 99.2 3.2E-12 1.1E-16 122.3 4.7 148 77-261 257-417 (525)
91 2i3b_A HCR-ntpase, human cance 99.2 6.1E-14 2.1E-18 117.1 -6.8 117 107-252 1-133 (189)
92 2ehv_A Hypothetical protein PH 99.2 3E-13 1E-17 115.9 -3.1 49 77-131 6-56 (251)
93 4a74_A DNA repair and recombin 99.2 3.1E-12 1.1E-16 108.1 3.2 130 79-241 3-140 (231)
94 1cr0_A DNA primase/helicase; R 99.2 1.1E-11 3.8E-16 109.6 5.4 37 96-132 24-60 (296)
95 1tf7_A KAIC; homohexamer, hexa 99.2 2.3E-12 7.9E-17 123.2 0.9 154 77-263 12-187 (525)
96 2o8b_B DNA mismatch repair pro 99.2 4.1E-12 1.4E-16 129.7 2.3 145 76-263 749-914 (1022)
97 3thx_B DNA mismatch repair pro 99.2 3.8E-12 1.3E-16 128.4 1.1 128 96-263 662-798 (918)
98 2obl_A ESCN; ATPase, hydrolase 99.1 9.1E-12 3.1E-16 113.2 2.0 64 76-160 44-107 (347)
99 3thx_A DNA mismatch repair pro 99.1 4.1E-11 1.4E-15 121.2 6.6 126 96-263 651-787 (934)
100 1uj2_A Uridine-cytidine kinase 99.1 1.5E-10 5.2E-15 100.1 8.4 144 105-268 20-168 (252)
101 1rj9_A FTSY, signal recognitio 99.1 3.9E-11 1.3E-15 107.2 4.5 42 106-164 101-142 (304)
102 2dpy_A FLII, flagellum-specifi 99.1 1.7E-11 5.9E-16 114.7 2.0 144 76-252 130-292 (438)
103 2qm8_A GTPase/ATPase; G protei 99.1 1.2E-11 4E-16 112.1 0.6 55 74-132 26-80 (337)
104 1ewq_A DNA mismatch repair pro 99.1 1.1E-11 3.8E-16 123.1 0.4 123 96-263 568-700 (765)
105 2qt1_A Nicotinamide riboside k 99.1 1.5E-10 5.2E-15 96.8 7.2 135 99-268 13-147 (207)
106 2w0m_A SSO2452; RECA, SSPF, un 99.1 1.5E-11 5.3E-16 103.7 0.6 36 96-131 11-47 (235)
107 1pui_A ENGB, probable GTP-bind 99.1 1.1E-11 3.9E-16 103.2 -0.5 48 77-131 3-50 (210)
108 1s96_A Guanylate kinase, GMP k 99.1 1E-10 3.5E-15 99.7 5.3 30 102-131 11-40 (219)
109 2qnr_A Septin-2, protein NEDD5 99.1 1.3E-11 4.5E-16 110.0 -0.3 144 81-250 2-152 (301)
110 3euj_A Chromosome partition pr 99.1 6.9E-11 2.3E-15 111.6 4.1 41 96-140 19-59 (483)
111 3e70_C DPA, signal recognition 99.0 1.2E-11 4.1E-16 111.6 -1.5 78 103-199 125-205 (328)
112 1nlf_A Regulatory protein REPA 99.0 6.5E-10 2.2E-14 97.5 9.1 119 103-242 26-151 (279)
113 1a7j_A Phosphoribulokinase; tr 99.0 7.3E-11 2.5E-15 104.7 2.5 148 106-268 4-165 (290)
114 3qkt_A DNA double-strand break 99.0 5.3E-10 1.8E-14 101.1 7.5 57 205-261 245-314 (339)
115 2gza_A Type IV secretion syste 99.0 4.6E-11 1.6E-15 109.1 0.2 54 79-132 137-200 (361)
116 2qag_C Septin-7; cell cycle, c 99.0 4.8E-10 1.6E-14 104.2 6.6 46 76-131 10-55 (418)
117 1wb9_A DNA mismatch repair pro 99.0 1.4E-10 4.8E-15 115.8 2.9 35 96-131 597-631 (800)
118 3jvv_A Twitching mobility prot 98.9 9.3E-10 3.2E-14 100.3 6.4 30 103-132 119-148 (356)
119 1pzn_A RAD51, DNA repair and r 98.9 4.3E-10 1.5E-14 102.2 4.0 116 97-242 120-247 (349)
120 1lw7_A Transcriptional regulat 98.9 4.5E-11 1.5E-15 109.1 -2.5 35 97-131 158-194 (365)
121 3nwj_A ATSK2; P loop, shikimat 98.9 2E-10 6.8E-15 99.8 1.1 52 76-131 16-72 (250)
122 1znw_A Guanylate kinase, GMP k 98.9 6.1E-10 2.1E-14 93.4 3.9 34 96-131 11-44 (207)
123 2f1r_A Molybdopterin-guanine d 98.9 1.9E-10 6.6E-15 94.3 -0.0 100 108-228 3-123 (171)
124 2yhs_A FTSY, cell division pro 98.8 1.3E-09 4.4E-14 102.9 4.2 34 98-131 284-317 (503)
125 3lnc_A Guanylate kinase, GMP k 98.8 8.4E-10 2.9E-14 94.0 2.2 35 97-131 17-52 (231)
126 3tr0_A Guanylate kinase, GMP k 98.8 1.8E-09 6.2E-14 89.6 4.1 31 101-131 1-31 (205)
127 4eun_A Thermoresistant glucoki 98.8 1.3E-08 4.3E-13 84.8 8.8 31 101-131 23-53 (200)
128 1ls1_A Signal recognition part 98.8 3.8E-09 1.3E-13 93.8 5.7 47 78-132 77-123 (295)
129 2qag_B Septin-6, protein NEDD5 98.8 7.3E-10 2.5E-14 103.0 0.5 50 76-131 15-66 (427)
130 2kjq_A DNAA-related protein; s 98.8 9.9E-09 3.4E-13 82.0 6.6 32 96-132 30-61 (149)
131 2ewv_A Twitching motility prot 98.8 5.7E-09 1.9E-13 95.6 5.5 34 96-131 127-160 (372)
132 1p9r_A General secretion pathw 98.7 3.8E-09 1.3E-13 98.2 3.5 55 77-140 143-197 (418)
133 3ec2_A DNA replication protein 98.7 9.5E-09 3.2E-13 83.9 5.4 31 101-131 32-62 (180)
134 1vma_A Cell division protein F 98.7 1.2E-08 4.3E-13 91.0 5.2 34 99-132 96-129 (306)
135 2bbw_A Adenylate kinase 4, AK4 98.7 4.7E-10 1.6E-14 96.5 -4.5 26 106-131 26-54 (246)
136 2cvh_A DNA repair and recombin 98.7 5.4E-08 1.8E-12 81.3 8.0 34 96-129 8-42 (220)
137 3uie_A Adenylyl-sulfate kinase 98.6 8.7E-09 3E-13 85.7 2.5 46 82-131 4-49 (200)
138 2rcn_A Probable GTPase ENGC; Y 98.6 1.6E-09 5.6E-14 98.6 -2.6 42 97-141 206-247 (358)
139 1zp6_A Hypothetical protein AT 98.6 2.3E-08 8E-13 82.0 4.6 29 103-131 5-33 (191)
140 3kta_A Chromosome segregation 98.6 3.6E-08 1.2E-12 80.3 5.7 34 98-132 18-51 (182)
141 3vaa_A Shikimate kinase, SK; s 98.6 2.4E-08 8.1E-13 83.0 4.2 36 96-131 14-49 (199)
142 1qhl_A Protein (cell division 98.6 1.3E-09 4.5E-14 93.2 -3.7 49 77-140 9-57 (227)
143 2oap_1 GSPE-2, type II secreti 98.6 8.5E-09 2.9E-13 98.2 1.0 42 96-140 249-290 (511)
144 1lvg_A Guanylate kinase, GMP k 98.6 2.7E-08 9.2E-13 82.9 3.3 27 105-131 2-28 (198)
145 2j41_A Guanylate kinase; GMP, 98.6 3.9E-08 1.3E-12 81.5 4.2 30 102-131 1-30 (207)
146 1udx_A The GTP-binding protein 98.5 4.2E-10 1.4E-14 104.6 -8.9 127 98-241 148-281 (416)
147 3a00_A Guanylate kinase, GMP k 98.5 4E-08 1.4E-12 80.8 3.2 25 107-131 1-25 (186)
148 1n0w_A DNA repair protein RAD5 98.5 1E-07 3.5E-12 80.8 5.4 28 103-130 20-47 (243)
149 1u0l_A Probable GTPase ENGC; p 98.5 3.1E-08 1.1E-12 88.0 1.9 36 102-140 164-199 (301)
150 1t9h_A YLOQ, probable GTPase E 98.5 1.5E-08 5.1E-13 90.5 -0.2 37 102-141 168-204 (307)
151 1ixz_A ATP-dependent metallopr 98.4 5.9E-08 2E-12 83.5 2.7 48 78-131 26-73 (254)
152 1kgd_A CASK, peripheral plasma 98.4 1.1E-07 3.8E-12 77.8 4.0 26 106-131 4-29 (180)
153 1iy2_A ATP-dependent metallopr 98.4 7.2E-08 2.5E-12 84.2 2.8 48 78-131 50-97 (278)
154 3k1j_A LON protease, ATP-depen 98.4 9.8E-08 3.4E-12 92.6 3.9 51 78-132 35-85 (604)
155 2x8a_A Nuclear valosin-contain 98.4 1.6E-07 5.5E-12 82.3 4.4 34 96-131 35-68 (274)
156 1in4_A RUVB, holliday junction 98.4 3E-08 1E-12 89.3 -1.0 50 78-131 19-75 (334)
157 2yv5_A YJEQ protein; hydrolase 98.4 1.3E-07 4.4E-12 84.1 3.0 37 102-142 160-196 (302)
158 3lda_A DNA repair protein RAD5 98.3 3.5E-07 1.2E-11 84.5 5.2 110 103-241 174-288 (400)
159 1svm_A Large T antigen; AAA+ f 98.3 1.8E-07 6.3E-12 85.7 3.2 36 96-131 158-193 (377)
160 2px0_A Flagellar biosynthesis 98.3 4.7E-07 1.6E-11 80.3 5.6 28 105-132 103-130 (296)
161 3t61_A Gluconokinase; PSI-biol 98.3 9.8E-07 3.3E-11 73.1 6.7 25 107-131 18-42 (202)
162 2p67_A LAO/AO transport system 98.3 1.7E-07 5.7E-12 84.7 1.9 55 74-132 27-81 (341)
163 3tau_A Guanylate kinase, GMP k 98.3 3.5E-07 1.2E-11 76.5 3.7 27 105-131 6-32 (208)
164 4e22_A Cytidylate kinase; P-lo 98.3 1.7E-07 5.8E-12 81.0 1.8 27 105-131 25-51 (252)
165 2grj_A Dephospho-COA kinase; T 98.3 1.4E-07 4.8E-12 78.5 1.0 37 227-268 111-147 (192)
166 2bdt_A BH3686; alpha-beta prot 98.3 3.8E-07 1.3E-11 74.7 3.5 25 107-131 2-26 (189)
167 1knq_A Gluconate kinase; ALFA/ 98.3 6.2E-07 2.1E-11 72.4 4.4 27 105-131 6-32 (175)
168 1oix_A RAS-related protein RAB 98.2 6.2E-07 2.1E-11 73.6 3.9 24 108-131 30-53 (191)
169 2vp4_A Deoxynucleoside kinase; 98.2 3.7E-07 1.3E-11 77.6 2.2 31 100-130 13-43 (230)
170 2o5v_A DNA replication and rep 98.2 7.8E-07 2.7E-11 81.0 4.5 46 208-253 265-319 (359)
171 1kag_A SKI, shikimate kinase I 98.2 6.1E-07 2.1E-11 72.2 3.4 26 106-131 3-28 (173)
172 1zu4_A FTSY; GTPase, signal re 98.2 6.2E-07 2.1E-11 80.4 3.6 35 98-132 96-130 (320)
173 1sxj_E Activator 1 40 kDa subu 98.2 2.4E-06 8.4E-11 76.5 7.6 38 223-261 131-174 (354)
174 1w1w_A Structural maintenance 98.2 1E-06 3.5E-11 81.8 4.7 45 208-252 333-381 (430)
175 3ney_A 55 kDa erythrocyte memb 98.2 1.2E-06 4.2E-11 73.1 4.1 31 101-131 13-43 (197)
176 3cr8_A Sulfate adenylyltranfer 98.1 7.9E-07 2.7E-11 85.3 3.0 30 103-132 365-394 (552)
177 3m6a_A ATP-dependent protease 98.1 1.4E-06 4.8E-11 83.5 4.5 48 79-131 85-132 (543)
178 2f6r_A COA synthase, bifunctio 98.1 1.3E-06 4.3E-11 76.8 3.4 38 226-268 180-217 (281)
179 3d3q_A TRNA delta(2)-isopenten 98.1 2.8E-07 9.7E-12 83.1 -1.1 38 108-164 8-45 (340)
180 1cke_A CK, MSSA, protein (cyti 98.0 3.3E-06 1.1E-10 70.9 4.1 25 107-131 5-29 (227)
181 3ice_A Transcription terminati 98.0 2E-06 6.8E-11 78.8 2.4 53 77-132 133-199 (422)
182 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 4.3E-06 1.5E-10 76.9 4.6 28 103-130 16-43 (392)
183 3lw7_A Adenylate kinase relate 98.0 2.9E-05 9.9E-10 61.6 9.0 40 226-268 77-119 (179)
184 2pez_A Bifunctional 3'-phospho 98.0 5.6E-06 1.9E-10 67.1 4.3 27 105-131 3-29 (179)
185 4eaq_A DTMP kinase, thymidylat 97.9 5.9E-06 2E-10 70.3 4.5 36 97-132 13-51 (229)
186 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 6.7E-06 2.3E-10 65.3 4.4 31 100-131 17-47 (149)
187 1nij_A Hypothetical protein YJ 97.9 2.1E-06 7.2E-11 76.7 1.3 25 107-131 4-28 (318)
188 1y63_A LMAJ004144AAA protein; 97.9 6.7E-06 2.3E-10 67.2 4.2 32 99-130 2-33 (184)
189 2qor_A Guanylate kinase; phosp 97.9 6.9E-06 2.3E-10 68.2 3.5 29 103-131 8-36 (204)
190 2ffh_A Protein (FFH); SRP54, s 97.9 6.6E-06 2.2E-10 76.4 3.7 45 80-132 79-123 (425)
191 1f2t_B RAD50 ABC-ATPase; DNA d 97.9 6.4E-06 2.2E-10 65.5 3.1 60 203-262 52-124 (148)
192 2r6a_A DNAB helicase, replicat 97.9 1.4E-05 4.7E-10 74.8 5.7 36 96-131 192-227 (454)
193 1j8m_F SRP54, signal recogniti 97.9 3.9E-06 1.3E-10 74.4 1.8 46 80-132 77-123 (297)
194 1jjv_A Dephospho-COA kinase; P 97.8 7.3E-06 2.5E-10 67.9 3.1 37 227-268 105-141 (206)
195 2dhr_A FTSH; AAA+ protein, hex 97.8 8.6E-06 3E-10 77.2 3.7 48 78-131 41-88 (499)
196 2if2_A Dephospho-COA kinase; a 97.8 1.1E-05 3.7E-10 66.7 3.4 22 109-131 3-24 (204)
197 1sxj_C Activator 1 40 kDa subu 97.8 6E-06 2E-10 74.0 1.7 48 81-132 22-71 (340)
198 2yvu_A Probable adenylyl-sulfa 97.8 1.9E-05 6.5E-10 64.3 4.6 31 102-132 8-38 (186)
199 1m7g_A Adenylylsulfate kinase; 97.8 1.5E-05 5.1E-10 66.5 3.9 30 102-131 20-49 (211)
200 3pih_A Uvrabc system protein A 97.7 1.8E-05 6E-10 80.0 4.3 72 192-263 445-528 (916)
201 3cm0_A Adenylate kinase; ATP-b 97.7 2.1E-05 7.2E-10 63.7 3.9 27 105-131 2-28 (186)
202 2f9l_A RAB11B, member RAS onco 97.7 2.2E-05 7.5E-10 64.4 3.6 24 108-131 6-29 (199)
203 3kb2_A SPBC2 prophage-derived 97.6 3E-05 1E-09 61.8 3.8 24 108-131 2-25 (173)
204 1q3t_A Cytidylate kinase; nucl 97.6 3.3E-05 1.1E-09 65.5 4.2 28 104-131 13-40 (236)
205 2dr3_A UPF0273 protein PH0284; 97.6 4.2E-05 1.5E-09 64.5 4.8 35 97-131 12-47 (247)
206 3qks_A DNA double-strand break 97.6 4E-05 1.4E-09 63.9 4.4 32 100-132 17-48 (203)
207 3kl4_A SRP54, signal recogniti 97.6 0.00014 4.8E-09 67.6 8.4 27 106-132 96-122 (433)
208 2ze6_A Isopentenyl transferase 97.6 4.8E-05 1.6E-09 65.6 4.9 24 108-131 2-25 (253)
209 4ad8_A DNA repair protein RECN 97.6 1.5E-05 5.1E-10 75.8 1.7 56 207-262 395-459 (517)
210 1qhx_A CPT, protein (chloramph 97.6 3.9E-05 1.3E-09 61.7 3.8 25 107-131 3-27 (178)
211 3hr8_A Protein RECA; alpha and 97.6 3.2E-05 1.1E-09 70.2 3.3 28 104-131 58-85 (356)
212 2www_A Methylmalonic aciduria 97.6 4.6E-05 1.6E-09 68.9 4.4 28 105-132 72-99 (349)
213 2p5t_B PEZT; postsegregational 97.5 3.2E-05 1.1E-09 66.5 2.8 33 98-131 24-56 (253)
214 1fnn_A CDC6P, cell division co 97.5 0.00044 1.5E-08 62.1 10.3 27 105-131 40-68 (389)
215 2gj8_A MNME, tRNA modification 97.5 4.1E-05 1.4E-09 61.5 3.1 27 105-131 2-28 (172)
216 2rhm_A Putative kinase; P-loop 97.5 6.4E-05 2.2E-09 61.1 4.2 27 105-131 3-29 (193)
217 2qag_A Septin-2, protein NEDD5 97.5 2.7E-05 9.2E-10 70.8 1.9 44 77-130 17-60 (361)
218 1kht_A Adenylate kinase; phosp 97.5 6.5E-05 2.2E-09 60.8 4.0 25 107-131 3-27 (192)
219 3t34_A Dynamin-related protein 97.5 3.8E-05 1.3E-09 69.4 2.8 47 80-130 11-57 (360)
220 1np6_A Molybdopterin-guanine d 97.5 6.6E-05 2.3E-09 61.2 3.9 26 107-132 6-31 (174)
221 1lv7_A FTSH; alpha/beta domain 97.5 7E-05 2.4E-09 64.1 3.9 34 97-132 37-70 (257)
222 1vht_A Dephospho-COA kinase; s 97.5 8.1E-05 2.8E-09 62.1 4.2 24 106-129 3-26 (218)
223 3iij_A Coilin-interacting nucl 97.5 7E-05 2.4E-09 60.5 3.6 28 104-131 8-35 (180)
224 2jaq_A Deoxyguanosine kinase; 97.4 7.9E-05 2.7E-09 60.9 3.9 23 109-131 2-24 (205)
225 1uf9_A TT1252 protein; P-loop, 97.4 7.9E-05 2.7E-09 61.0 3.9 25 106-130 7-31 (203)
226 1ega_A Protein (GTP-binding pr 97.4 5E-05 1.7E-09 67.2 2.8 27 105-131 6-32 (301)
227 1via_A Shikimate kinase; struc 97.4 6.7E-05 2.3E-09 60.4 3.3 23 109-131 6-28 (175)
228 1m2o_B GTP-binding protein SAR 97.4 7E-05 2.4E-09 61.0 3.4 34 96-130 13-46 (190)
229 3trf_A Shikimate kinase, SK; a 97.4 8.7E-05 3E-09 60.0 4.0 25 107-131 5-29 (185)
230 1f6b_A SAR1; gtpases, N-termin 97.4 2.2E-05 7.6E-10 64.5 0.4 33 96-129 15-47 (198)
231 3r20_A Cytidylate kinase; stru 97.4 8.9E-05 3E-09 63.3 4.0 26 106-131 8-33 (233)
232 1xjc_A MOBB protein homolog; s 97.4 0.00016 5.6E-09 58.7 5.4 25 108-132 5-29 (169)
233 2r6f_A Excinuclease ABC subuni 97.4 9.6E-05 3.3E-09 74.7 4.7 71 193-263 486-568 (972)
234 2c95_A Adenylate kinase 1; tra 97.4 0.0001 3.6E-09 59.9 4.0 28 104-131 6-33 (196)
235 2plr_A DTMP kinase, probable t 97.4 0.00012 4E-09 60.3 4.3 27 106-132 3-29 (213)
236 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.9E-09 59.4 4.2 26 106-131 2-27 (196)
237 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.6E-09 58.9 3.9 22 108-129 3-24 (181)
238 2v54_A DTMP kinase, thymidylat 97.4 0.00011 3.7E-09 60.3 3.8 26 106-131 3-28 (204)
239 2wwf_A Thymidilate kinase, put 97.4 0.00011 3.9E-09 60.5 3.9 29 104-132 7-35 (212)
240 4i1u_A Dephospho-COA kinase; s 97.4 0.00019 6.7E-09 60.2 5.3 39 226-268 111-149 (210)
241 2wji_A Ferrous iron transport 97.4 8.5E-05 2.9E-09 59.0 2.8 24 108-131 4-27 (165)
242 1gtv_A TMK, thymidylate kinase 97.4 4.7E-05 1.6E-09 63.0 1.4 24 109-132 2-25 (214)
243 3ake_A Cytidylate kinase; CMP 97.3 0.00012 4.2E-09 60.0 3.9 23 109-131 4-26 (208)
244 2bwj_A Adenylate kinase 5; pho 97.3 6.2E-05 2.1E-09 61.4 2.0 28 104-131 9-36 (199)
245 1nn5_A Similar to deoxythymidy 97.3 0.00013 4.5E-09 60.2 4.0 29 104-132 6-34 (215)
246 1gvn_B Zeta; postsegregational 97.3 0.00014 4.8E-09 63.8 3.8 29 103-131 29-57 (287)
247 2vli_A Antibiotic resistance p 97.3 9.9E-05 3.4E-09 59.5 2.6 26 106-131 4-29 (183)
248 2ygr_A Uvrabc system protein A 97.3 0.00017 5.7E-09 73.2 4.7 70 194-263 504-585 (993)
249 1nks_A Adenylate kinase; therm 97.3 0.00016 5.4E-09 58.5 3.6 24 109-132 3-26 (194)
250 2ce7_A Cell division protein F 97.2 9.4E-05 3.2E-09 69.7 2.2 47 80-132 28-74 (476)
251 2z0h_A DTMP kinase, thymidylat 97.2 0.00019 6.6E-09 58.3 3.9 23 109-131 2-24 (197)
252 1aky_A Adenylate kinase; ATP:A 97.2 0.00022 7.6E-09 59.5 4.2 26 106-131 3-28 (220)
253 3exa_A TRNA delta(2)-isopenten 97.2 0.00044 1.5E-08 61.6 6.2 25 107-131 3-27 (322)
254 1ukz_A Uridylate kinase; trans 97.2 0.00023 8E-09 58.4 4.2 28 104-131 12-39 (203)
255 2vf7_A UVRA2, excinuclease ABC 97.2 0.00025 8.7E-09 71.0 5.2 69 194-262 362-442 (842)
256 2wjg_A FEOB, ferrous iron tran 97.2 0.00016 5.5E-09 58.1 3.1 23 108-130 8-30 (188)
257 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.8E-09 59.5 3.2 23 109-131 3-25 (186)
258 1qf9_A UMP/CMP kinase, protein 97.2 0.00024 8.4E-09 57.3 4.2 26 106-131 5-30 (194)
259 2cdn_A Adenylate kinase; phosp 97.2 0.00024 8.3E-09 58.3 4.2 27 105-131 18-44 (201)
260 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00024 8.2E-09 65.3 4.3 28 103-130 18-45 (396)
261 1zuh_A Shikimate kinase; alpha 97.2 0.00025 8.7E-09 56.4 3.9 25 107-131 7-31 (168)
262 3crm_A TRNA delta(2)-isopenten 97.2 0.00042 1.4E-08 61.9 5.7 38 108-164 6-43 (323)
263 2iyv_A Shikimate kinase, SK; t 97.2 0.00019 6.5E-09 58.0 3.2 24 108-131 3-26 (184)
264 1ypw_A Transitional endoplasmi 97.2 0.00018 6.2E-09 72.0 3.6 31 101-131 232-262 (806)
265 3kta_B Chromosome segregation 97.2 0.00022 7.4E-09 58.1 3.3 49 204-252 60-112 (173)
266 3fb4_A Adenylate kinase; psych 97.2 0.00025 8.6E-09 58.8 3.9 23 109-131 2-24 (216)
267 2pbr_A DTMP kinase, thymidylat 97.2 0.00026 8.9E-09 57.3 3.8 23 109-131 2-24 (195)
268 1e6c_A Shikimate kinase; phosp 97.2 0.00023 7.8E-09 56.7 3.3 24 108-131 3-26 (173)
269 2zej_A Dardarin, leucine-rich 97.1 0.00016 5.4E-09 58.4 2.4 22 109-130 4-25 (184)
270 3cf0_A Transitional endoplasmi 97.1 0.00025 8.7E-09 62.4 3.9 30 102-131 44-73 (301)
271 3a8t_A Adenylate isopentenyltr 97.1 0.00045 1.5E-08 62.1 5.3 26 106-131 39-64 (339)
272 2zr9_A Protein RECA, recombina 97.1 0.00017 5.9E-09 65.2 2.6 29 103-131 57-85 (349)
273 1zd8_A GTP:AMP phosphotransfer 97.1 0.00026 9.1E-09 59.4 3.6 27 105-131 5-31 (227)
274 2pt5_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 55.6 3.9 23 109-131 2-24 (168)
275 3tlx_A Adenylate kinase 2; str 97.1 0.00037 1.3E-08 59.5 4.5 28 104-131 26-53 (243)
276 1zak_A Adenylate kinase; ATP:A 97.1 0.00026 8.9E-09 59.2 3.4 26 106-131 4-29 (222)
277 3umf_A Adenylate kinase; rossm 97.1 0.0004 1.4E-08 58.6 4.5 31 101-131 23-53 (217)
278 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 58.4 3.7 23 109-131 2-24 (216)
279 3foz_A TRNA delta(2)-isopenten 97.1 0.00078 2.7E-08 59.9 6.1 25 107-131 10-34 (316)
280 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00046 1.6E-08 59.4 4.3 26 106-131 3-28 (260)
281 4ad8_A DNA repair protein RECN 97.0 0.00038 1.3E-08 66.0 3.9 35 96-131 50-84 (517)
282 2dy1_A Elongation factor G; tr 97.0 0.00035 1.2E-08 68.4 3.7 31 101-131 3-33 (665)
283 1mky_A Probable GTP-binding pr 96.9 0.00059 2E-08 63.3 4.6 25 107-131 180-204 (439)
284 1v5w_A DMC1, meiotic recombina 96.9 0.001 3.6E-08 59.7 5.9 29 103-131 118-146 (343)
285 3lxx_A GTPase IMAP family memb 96.9 0.00044 1.5E-08 58.4 3.1 24 108-131 30-53 (239)
286 3eph_A TRNA isopentenyltransfe 96.9 0.0011 3.6E-08 61.1 5.9 25 107-131 2-26 (409)
287 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00047 1.6E-08 62.7 3.5 23 109-131 181-203 (364)
288 3auy_A DNA double-strand break 96.9 0.00053 1.8E-08 62.2 3.8 56 207-262 279-347 (371)
289 4fcw_A Chaperone protein CLPB; 96.9 0.00054 1.8E-08 59.8 3.7 26 107-132 47-72 (311)
290 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 57.1 3.9 23 109-131 2-24 (223)
291 3be4_A Adenylate kinase; malar 96.9 0.00058 2E-08 56.9 3.5 26 106-131 4-29 (217)
292 3k53_A Ferrous iron transport 96.9 0.00046 1.6E-08 59.7 2.8 24 108-131 4-27 (271)
293 4a1f_A DNAB helicase, replicat 96.8 0.00057 1.9E-08 61.5 3.4 35 97-131 36-70 (338)
294 2h92_A Cytidylate kinase; ross 96.8 0.00063 2.1E-08 56.5 3.4 25 107-131 3-27 (219)
295 1ak2_A Adenylate kinase isoenz 96.8 0.00092 3.1E-08 56.4 4.3 26 106-131 15-40 (233)
296 1e4v_A Adenylate kinase; trans 96.8 0.00072 2.5E-08 56.1 3.6 23 109-131 2-24 (214)
297 3bos_A Putative DNA replicatio 96.8 0.00095 3.2E-08 55.5 4.2 27 106-132 51-77 (242)
298 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00072 2.5E-08 61.6 3.3 27 106-132 34-60 (392)
299 1z2a_A RAS-related protein RAB 96.7 0.00086 3E-08 52.3 3.4 23 108-130 6-28 (168)
300 1ltq_A Polynucleotide kinase; 96.7 0.0009 3.1E-08 58.4 3.8 23 108-130 3-25 (301)
301 2ged_A SR-beta, signal recogni 96.7 0.0011 3.8E-08 53.4 4.1 27 105-131 46-72 (193)
302 4edh_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 55.4 4.3 28 105-132 4-31 (213)
303 2dyk_A GTP-binding protein; GT 96.7 0.001 3.5E-08 51.6 3.7 22 109-130 3-24 (161)
304 2z43_A DNA repair and recombin 96.7 0.0013 4.3E-08 58.6 4.5 29 103-131 103-131 (324)
305 1kao_A RAP2A; GTP-binding prot 96.7 0.00098 3.3E-08 51.8 3.4 23 108-130 4-26 (167)
306 2lkc_A Translation initiation 96.7 0.001 3.5E-08 52.6 3.6 26 105-130 6-31 (178)
307 2ius_A DNA translocase FTSK; n 96.7 0.0016 5.3E-08 61.8 5.3 31 99-129 159-189 (512)
308 2qby_A CDC6 homolog 1, cell di 96.7 0.00088 3E-08 59.8 3.4 28 105-132 43-70 (386)
309 1u8z_A RAS-related protein RAL 96.7 0.001 3.4E-08 51.8 3.4 23 108-130 5-27 (168)
310 1jbk_A CLPB protein; beta barr 96.7 0.0014 4.8E-08 52.1 4.3 28 105-132 41-68 (195)
311 3b9p_A CG5977-PA, isoform A; A 96.7 0.0012 4E-08 57.4 4.1 26 106-131 53-78 (297)
312 3sr0_A Adenylate kinase; phosp 96.7 0.0012 4E-08 55.2 3.9 23 109-131 2-24 (206)
313 2ce2_X GTPase HRAS; signaling 96.7 0.001 3.5E-08 51.5 3.3 22 109-130 5-26 (166)
314 3v9p_A DTMP kinase, thymidylat 96.7 0.00092 3.2E-08 56.7 3.2 29 104-132 22-50 (227)
315 3zvl_A Bifunctional polynucleo 96.7 0.00094 3.2E-08 61.6 3.5 30 102-131 253-282 (416)
316 1z0j_A RAB-22, RAS-related pro 96.6 0.0011 3.8E-08 51.8 3.4 24 108-131 7-30 (170)
317 3llm_A ATP-dependent RNA helic 96.6 0.00072 2.5E-08 57.1 2.4 30 101-130 70-99 (235)
318 3lv8_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 56.3 3.8 27 106-132 26-52 (236)
319 1z08_A RAS-related protein RAB 96.6 0.0011 3.9E-08 51.8 3.4 23 108-130 7-29 (170)
320 1ek0_A Protein (GTP-binding pr 96.6 0.0011 3.9E-08 51.7 3.4 23 109-131 5-27 (170)
321 3dm5_A SRP54, signal recogniti 96.6 0.0025 8.4E-08 59.4 6.1 27 106-132 99-125 (443)
322 1c1y_A RAS-related protein RAP 96.6 0.0012 3.9E-08 51.6 3.4 23 108-130 4-26 (167)
323 1ky3_A GTP-binding protein YPT 96.6 0.0013 4.4E-08 52.1 3.7 24 108-131 9-32 (182)
324 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0012 4E-08 52.2 3.4 23 108-130 8-30 (177)
325 2ocp_A DGK, deoxyguanosine kin 96.6 0.0013 4.4E-08 55.6 3.8 26 106-131 1-26 (241)
326 1g16_A RAS-related protein SEC 96.6 0.0011 3.7E-08 51.9 3.1 23 108-130 4-26 (170)
327 2nzj_A GTP-binding protein REM 96.6 0.00092 3.1E-08 52.7 2.6 23 108-130 5-27 (175)
328 2erx_A GTP-binding protein DI- 96.6 0.001 3.5E-08 52.0 2.9 23 108-130 4-26 (172)
329 2w58_A DNAI, primosome compone 96.6 0.0015 5.1E-08 53.4 4.0 25 108-132 55-79 (202)
330 1upt_A ARL1, ADP-ribosylation 96.6 0.0017 6E-08 50.8 4.2 25 106-130 6-30 (171)
331 2fn4_A P23, RAS-related protei 96.6 0.0013 4.5E-08 52.0 3.4 23 108-130 10-32 (181)
332 3ld9_A DTMP kinase, thymidylat 96.6 0.0018 6.3E-08 54.7 4.4 29 104-132 18-46 (223)
333 3b1v_A Ferrous iron uptake tra 96.5 0.0011 3.6E-08 57.8 2.9 23 108-130 4-26 (272)
334 1r2q_A RAS-related protein RAB 96.5 0.0014 4.8E-08 51.1 3.4 23 108-130 7-29 (170)
335 1ko7_A HPR kinase/phosphatase; 96.5 0.0016 5.3E-08 58.0 4.0 34 96-130 134-167 (314)
336 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.8E-08 52.8 3.4 23 108-130 26-48 (193)
337 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0014 5E-08 52.2 3.4 24 108-131 5-28 (189)
338 4tmk_A Protein (thymidylate ki 96.5 0.0017 5.7E-08 54.5 3.9 27 106-132 2-28 (213)
339 3bc1_A RAS-related protein RAB 96.5 0.0015 5E-08 52.2 3.4 23 108-130 12-34 (195)
340 3q85_A GTP-binding protein REM 96.5 0.0012 4.2E-08 51.7 2.8 22 109-130 4-25 (169)
341 3h4m_A Proteasome-activating n 96.5 0.0017 5.7E-08 56.1 3.9 28 104-131 48-75 (285)
342 1r8s_A ADP-ribosylation factor 96.5 0.0016 5.4E-08 50.8 3.4 23 109-131 2-24 (164)
343 3tmk_A Thymidylate kinase; pho 96.5 0.0018 6.2E-08 54.4 4.0 28 105-132 3-30 (216)
344 3q72_A GTP-binding protein RAD 96.5 0.00088 3E-08 52.4 1.8 22 109-130 4-25 (166)
345 3clv_A RAB5 protein, putative; 96.5 0.0023 7.9E-08 51.3 4.3 25 107-131 7-31 (208)
346 2qmh_A HPR kinase/phosphorylas 96.5 0.0016 5.6E-08 54.2 3.4 35 96-131 24-58 (205)
347 2a9k_A RAS-related protein RAL 96.5 0.0017 5.8E-08 51.6 3.4 23 108-130 19-41 (187)
348 3pqc_A Probable GTP-binding pr 96.4 0.0013 4.3E-08 52.8 2.6 24 107-130 23-46 (195)
349 1svi_A GTP-binding protein YSX 96.4 0.0013 4.3E-08 53.0 2.6 25 106-130 22-46 (195)
350 2g6b_A RAS-related protein RAB 96.4 0.0017 6E-08 51.3 3.4 24 108-131 11-34 (180)
351 1z0f_A RAB14, member RAS oncog 96.4 0.0018 6E-08 51.1 3.4 24 108-131 16-39 (179)
352 1fzq_A ADP-ribosylation factor 96.4 0.0011 3.9E-08 53.1 2.3 25 106-130 15-39 (181)
353 3t1o_A Gliding protein MGLA; G 96.4 0.0019 6.5E-08 51.8 3.6 24 108-131 15-38 (198)
354 2y8e_A RAB-protein 6, GH09086P 96.4 0.0016 5.5E-08 51.3 3.1 23 108-130 15-37 (179)
355 3ihw_A Centg3; RAS, centaurin, 96.4 0.0019 6.6E-08 52.0 3.6 23 108-130 21-43 (184)
356 3tw8_B RAS-related protein RAB 96.4 0.001 3.5E-08 52.6 1.9 23 108-130 10-32 (181)
357 2hxs_A RAB-26, RAS-related pro 96.4 0.0016 5.4E-08 51.5 3.0 23 108-130 7-29 (178)
358 3con_A GTPase NRAS; structural 96.4 0.002 6.7E-08 51.7 3.6 23 108-130 22-44 (190)
359 2p65_A Hypothetical protein PF 96.4 0.0018 6.3E-08 51.3 3.4 28 105-132 41-68 (187)
360 2efe_B Small GTP-binding prote 96.4 0.002 6.7E-08 51.1 3.4 23 108-130 13-35 (181)
361 2wsm_A Hydrogenase expression/ 96.4 0.0019 6.4E-08 53.4 3.4 26 106-131 29-54 (221)
362 3bwd_D RAC-like GTP-binding pr 96.4 0.0024 8.3E-08 50.6 3.9 25 106-130 7-31 (182)
363 1nrj_B SR-beta, signal recogni 96.4 0.0021 7.2E-08 52.9 3.6 24 108-131 13-36 (218)
364 2bov_A RAla, RAS-related prote 96.4 0.002 6.7E-08 52.3 3.4 23 108-130 15-37 (206)
365 1njg_A DNA polymerase III subu 96.4 0.0024 8.1E-08 52.5 3.9 25 108-132 46-70 (250)
366 1p5z_B DCK, deoxycytidine kina 96.4 0.00096 3.3E-08 57.3 1.5 28 104-131 21-48 (263)
367 2r62_A Cell division protease 96.4 0.00092 3.2E-08 57.2 1.4 33 98-132 37-69 (268)
368 1vg8_A RAS-related protein RAB 96.4 0.0022 7.6E-08 52.1 3.7 24 108-131 9-32 (207)
369 2bme_A RAB4A, RAS-related prot 96.4 0.0018 6.3E-08 51.6 3.1 24 108-131 11-34 (186)
370 3lxw_A GTPase IMAP family memb 96.4 0.0018 6.1E-08 55.3 3.1 25 107-131 21-45 (247)
371 2cxx_A Probable GTP-binding pr 96.4 0.0014 4.9E-08 52.3 2.4 22 109-130 3-24 (190)
372 2o5v_A DNA replication and rep 96.4 0.0016 5.4E-08 59.1 2.9 35 96-131 16-50 (359)
373 1ypw_A Transitional endoplasmi 96.4 0.001 3.5E-08 66.5 1.8 33 100-132 504-536 (806)
374 2gf9_A RAS-related protein RAB 96.4 0.0021 7.1E-08 51.7 3.4 24 108-131 23-46 (189)
375 2e87_A Hypothetical protein PH 96.3 0.0014 4.9E-08 59.0 2.5 27 105-131 165-191 (357)
376 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0029 1E-07 53.6 4.4 28 104-131 36-63 (262)
377 3kkq_A RAS-related protein M-R 96.3 0.0024 8.2E-08 50.8 3.6 23 108-130 19-41 (183)
378 2dby_A GTP-binding protein; GD 96.3 0.002 7E-08 58.5 3.5 23 109-131 3-25 (368)
379 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0022 7.4E-08 51.4 3.3 23 108-130 8-30 (184)
380 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0023 7.7E-08 50.9 3.4 23 108-130 6-28 (186)
381 3tkl_A RAS-related protein RAB 96.3 0.0025 8.4E-08 51.3 3.6 23 108-130 17-39 (196)
382 2fg5_A RAB-22B, RAS-related pr 96.3 0.0021 7.1E-08 52.0 3.1 24 108-131 24-47 (192)
383 1l8q_A Chromosomal replication 96.3 0.002 6.9E-08 56.8 3.3 26 106-131 36-61 (324)
384 2cjw_A GTP-binding protein GEM 96.3 0.0025 8.6E-08 51.8 3.6 24 108-131 7-30 (192)
385 1moz_A ARL1, ADP-ribosylation 96.3 0.0017 5.8E-08 51.6 2.5 25 105-129 16-40 (183)
386 1wf3_A GTP-binding protein; GT 96.3 0.002 6.8E-08 56.8 3.1 22 109-130 9-30 (301)
387 1sxj_D Activator 1 41 kDa subu 96.3 0.0015 5.2E-08 57.8 2.3 22 110-131 61-82 (353)
388 2fv8_A H6, RHO-related GTP-bin 96.3 0.0022 7.4E-08 52.6 3.1 33 98-130 16-48 (207)
389 1z06_A RAS-related protein RAB 96.3 0.0025 8.5E-08 51.2 3.4 23 108-130 21-43 (189)
390 1jal_A YCHF protein; nucleotid 96.3 0.0026 8.8E-08 57.8 3.8 24 107-130 2-25 (363)
391 3iev_A GTP-binding protein ERA 96.3 0.002 7E-08 56.8 3.1 25 106-130 9-33 (308)
392 2p5s_A RAS and EF-hand domain 96.2 0.0031 1.1E-07 51.2 3.9 26 105-130 26-51 (199)
393 2v3c_C SRP54, signal recogniti 96.2 0.0018 6.2E-08 60.1 2.7 27 106-132 98-124 (432)
394 2a5j_A RAS-related protein RAB 96.2 0.0026 8.9E-08 51.3 3.4 23 108-130 22-44 (191)
395 3t5g_A GTP-binding protein RHE 96.2 0.0026 8.8E-08 50.5 3.3 23 108-130 7-29 (181)
396 3dz8_A RAS-related protein RAB 96.2 0.0026 8.9E-08 51.3 3.3 24 108-131 24-47 (191)
397 3bh0_A DNAB-like replicative h 96.2 0.0023 8E-08 56.7 3.3 36 96-131 57-92 (315)
398 3oes_A GTPase rhebl1; small GT 96.2 0.0026 8.9E-08 51.8 3.3 27 105-131 22-48 (201)
399 2gf0_A GTP-binding protein DI- 96.2 0.0033 1.1E-07 50.6 3.9 24 107-130 8-31 (199)
400 2ew1_A RAS-related protein RAB 96.2 0.0024 8.1E-08 52.5 3.1 24 108-131 27-50 (201)
401 2xtp_A GTPase IMAP family memb 96.2 0.0021 7.2E-08 54.8 2.8 24 107-130 22-45 (260)
402 1zd9_A ADP-ribosylation factor 96.2 0.0028 9.5E-08 51.0 3.4 24 107-130 22-45 (188)
403 3iby_A Ferrous iron transport 96.2 0.0021 7.3E-08 55.2 2.8 22 109-130 3-24 (256)
404 2iwr_A Centaurin gamma 1; ANK 96.2 0.0025 8.6E-08 50.4 3.0 23 108-130 8-30 (178)
405 1x3s_A RAS-related protein RAB 96.2 0.0032 1.1E-07 50.5 3.6 24 108-131 16-39 (195)
406 3gmt_A Adenylate kinase; ssgci 96.2 0.0034 1.2E-07 53.3 3.9 24 108-131 9-32 (230)
407 3reg_A RHO-like small GTPase; 96.2 0.0032 1.1E-07 50.8 3.6 24 108-131 24-47 (194)
408 2atv_A RERG, RAS-like estrogen 96.2 0.0038 1.3E-07 50.5 4.1 25 106-130 27-51 (196)
409 3p32_A Probable GTPase RV1496/ 96.2 0.0063 2.1E-07 54.8 5.9 28 104-131 76-103 (355)
410 1ksh_A ARF-like protein 2; sma 96.2 0.0026 8.8E-08 50.9 3.0 26 105-130 16-41 (186)
411 2bcg_Y Protein YP2, GTP-bindin 96.2 0.0026 9E-08 51.8 3.1 23 108-130 9-31 (206)
412 1zbd_A Rabphilin-3A; G protein 96.2 0.0025 8.4E-08 51.8 2.8 23 108-130 9-31 (203)
413 3cbq_A GTP-binding protein REM 96.1 0.0016 5.4E-08 53.2 1.5 23 108-130 24-46 (195)
414 3t15_A Ribulose bisphosphate c 96.1 0.0037 1.3E-07 54.7 4.0 29 104-132 33-61 (293)
415 3c5c_A RAS-like protein 12; GD 96.1 0.0036 1.2E-07 50.4 3.7 23 108-130 22-44 (187)
416 3a1s_A Iron(II) transport prot 96.1 0.0028 9.6E-08 54.5 3.1 24 108-131 6-29 (258)
417 4hlc_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 51.5 4.1 26 107-132 2-27 (205)
418 2fh5_B SR-beta, signal recogni 96.1 0.0036 1.2E-07 51.3 3.6 25 107-131 7-31 (214)
419 2hf9_A Probable hydrogenase ni 96.1 0.0032 1.1E-07 52.1 3.3 26 106-131 37-62 (226)
420 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0035 1.2E-07 58.7 3.8 31 102-132 146-176 (473)
421 2i1q_A DNA repair and recombin 96.1 0.003 1E-07 55.8 3.3 28 103-130 94-121 (322)
422 1zj6_A ADP-ribosylation factor 96.1 0.0034 1.2E-07 50.3 3.3 26 105-130 14-39 (187)
423 2z4s_A Chromosomal replication 96.1 0.0032 1.1E-07 58.4 3.6 26 107-132 130-155 (440)
424 1gwn_A RHO-related GTP-binding 96.1 0.0034 1.2E-07 51.7 3.3 23 108-130 29-51 (205)
425 3cph_A RAS-related protein SEC 96.1 0.0042 1.4E-07 50.6 3.9 25 106-130 19-43 (213)
426 3tqf_A HPR(Ser) kinase; transf 96.0 0.0041 1.4E-07 50.6 3.5 33 97-130 7-39 (181)
427 1g8f_A Sulfate adenylyltransfe 96.0 0.0038 1.3E-07 59.1 3.8 29 104-132 392-420 (511)
428 2o52_A RAS-related protein RAB 96.0 0.0025 8.7E-08 51.9 2.3 23 108-130 26-48 (200)
429 2zts_A Putative uncharacterize 96.0 0.0038 1.3E-07 52.2 3.5 25 104-128 27-51 (251)
430 3auy_A DNA double-strand break 96.0 0.0031 1E-07 57.1 2.9 33 98-131 17-50 (371)
431 3i8s_A Ferrous iron transport 96.0 0.0031 1.1E-07 54.6 2.9 24 108-131 4-27 (274)
432 3t5d_A Septin-7; GTP-binding p 96.0 0.0021 7.2E-08 55.6 1.7 22 109-130 10-31 (274)
433 2gco_A H9, RHO-related GTP-bin 96.0 0.0037 1.3E-07 50.9 3.1 23 108-130 26-48 (201)
434 2atx_A Small GTP binding prote 96.0 0.0039 1.3E-07 50.2 3.1 23 108-130 19-41 (194)
435 2qu8_A Putative nucleolar GTP- 96.0 0.0038 1.3E-07 52.0 3.1 24 107-130 29-52 (228)
436 2il1_A RAB12; G-protein, GDP, 96.0 0.0024 8.3E-08 51.6 1.8 23 108-130 27-49 (192)
437 2h17_A ADP-ribosylation factor 96.0 0.0033 1.1E-07 50.2 2.6 24 107-130 21-44 (181)
438 2f7s_A C25KG, RAS-related prot 95.9 0.0033 1.1E-07 51.6 2.7 23 108-130 26-48 (217)
439 2fu5_C RAS-related protein RAB 95.9 0.0023 8E-08 50.9 1.7 23 108-130 9-31 (183)
440 4bas_A ADP-ribosylation factor 95.9 0.0028 9.7E-08 51.0 2.2 25 106-130 16-40 (199)
441 1m8p_A Sulfate adenylyltransfe 95.9 0.0053 1.8E-07 59.0 4.4 27 105-131 394-420 (573)
442 1jwy_B Dynamin A GTPase domain 95.9 0.0034 1.2E-07 55.0 2.8 23 108-130 25-47 (315)
443 2chg_A Replication factor C sm 95.9 0.005 1.7E-07 50.0 3.6 23 109-131 40-62 (226)
444 4dhe_A Probable GTP-binding pr 95.9 0.0015 5.3E-08 53.9 0.4 24 107-130 29-52 (223)
445 2h57_A ADP-ribosylation factor 95.9 0.0022 7.6E-08 51.5 1.4 25 107-131 21-45 (190)
446 3syl_A Protein CBBX; photosynt 95.9 0.0055 1.9E-07 53.3 4.0 28 105-132 65-92 (309)
447 3n70_A Transport activator; si 95.9 0.005 1.7E-07 47.8 3.4 27 105-131 22-48 (145)
448 3fdi_A Uncharacterized protein 95.8 0.0054 1.9E-07 50.7 3.5 25 107-131 6-30 (201)
449 2j1l_A RHO-related GTP-binding 95.8 0.0038 1.3E-07 51.5 2.6 23 108-130 35-57 (214)
450 2v1u_A Cell division control p 95.8 0.0045 1.5E-07 55.2 3.2 27 105-131 42-68 (387)
451 2hup_A RAS-related protein RAB 95.8 0.0052 1.8E-07 50.1 3.4 23 108-130 30-52 (201)
452 1u94_A RECA protein, recombina 95.8 0.0056 1.9E-07 55.3 3.8 28 104-131 60-87 (356)
453 2j37_W Signal recognition part 95.8 0.01 3.4E-07 56.2 5.7 28 105-132 99-126 (504)
454 3cpj_B GTP-binding protein YPT 95.8 0.0054 1.9E-07 50.8 3.4 23 108-130 14-36 (223)
455 1w1w_A Structural maintenance 95.8 0.0047 1.6E-07 56.9 3.3 46 77-132 6-51 (430)
456 2q3h_A RAS homolog gene family 95.8 0.005 1.7E-07 49.8 3.1 26 105-130 18-43 (201)
457 3llu_A RAS-related GTP-binding 95.8 0.0042 1.4E-07 50.4 2.6 25 107-131 20-44 (196)
458 1x6v_B Bifunctional 3'-phospho 95.8 0.0064 2.2E-07 59.0 4.3 26 106-131 51-76 (630)
459 2xxa_A Signal recognition part 95.8 0.014 4.6E-07 54.2 6.3 32 101-132 94-125 (433)
460 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0069 2.4E-07 53.7 4.1 28 104-131 42-69 (322)
461 2g3y_A GTP-binding protein GEM 95.8 0.0048 1.6E-07 51.4 2.9 23 108-130 38-60 (211)
462 2axn_A 6-phosphofructo-2-kinas 95.7 0.0073 2.5E-07 57.3 4.4 27 105-131 33-59 (520)
463 1tue_A Replication protein E1; 95.7 0.0061 2.1E-07 51.0 3.4 28 104-131 55-82 (212)
464 2b6h_A ADP-ribosylation factor 95.7 0.0063 2.2E-07 49.2 3.5 25 105-129 27-51 (192)
465 3q3j_B RHO-related GTP-binding 95.7 0.0061 2.1E-07 50.3 3.4 24 107-130 27-50 (214)
466 3def_A T7I23.11 protein; chlor 95.7 0.0049 1.7E-07 52.8 2.9 24 107-130 36-59 (262)
467 2aka_B Dynamin-1; fusion prote 95.7 0.0045 1.5E-07 53.6 2.6 25 107-131 26-50 (299)
468 4gzl_A RAS-related C3 botulinu 95.7 0.0069 2.4E-07 49.5 3.6 25 106-130 29-53 (204)
469 2j0v_A RAC-like GTP-binding pr 95.7 0.0058 2E-07 49.9 3.1 24 107-130 9-32 (212)
470 3hws_A ATP-dependent CLP prote 95.7 0.0063 2.2E-07 54.6 3.5 26 106-131 50-75 (363)
471 2orw_A Thymidine kinase; TMTK, 95.7 0.0081 2.8E-07 48.9 3.8 26 106-131 2-28 (184)
472 3pvs_A Replication-associated 95.7 0.0026 8.9E-08 59.3 0.9 24 109-132 52-75 (447)
473 2yc2_C IFT27, small RAB-relate 95.6 0.0024 8E-08 51.8 0.5 23 108-130 21-43 (208)
474 1ofh_A ATP-dependent HSL prote 95.6 0.0074 2.5E-07 52.2 3.7 27 106-132 49-75 (310)
475 1h65_A Chloroplast outer envel 95.6 0.0054 1.9E-07 52.8 2.8 23 108-130 40-62 (270)
476 1bif_A 6-phosphofructo-2-kinas 95.6 0.0089 3.1E-07 55.8 4.3 27 105-131 37-63 (469)
477 3io5_A Recombination and repai 95.6 0.0091 3.1E-07 53.2 4.1 27 104-131 26-53 (333)
478 1d2n_A N-ethylmaleimide-sensit 95.6 0.0088 3E-07 51.3 4.0 27 105-131 62-88 (272)
479 3cnl_A YLQF, putative uncharac 95.6 0.006 2E-07 52.7 2.8 24 108-131 100-123 (262)
480 3uk6_A RUVB-like 2; hexameric 95.5 0.0081 2.8E-07 53.6 3.7 27 105-131 68-94 (368)
481 2qby_B CDC6 homolog 3, cell di 95.5 0.0095 3.2E-07 53.3 4.0 27 105-131 43-69 (384)
482 2q6t_A DNAB replication FORK h 95.5 0.0076 2.6E-07 55.9 3.4 35 97-131 190-224 (444)
483 3d8b_A Fidgetin-like protein 1 95.5 0.01 3.5E-07 53.3 4.2 27 105-131 115-141 (357)
484 4djt_A GTP-binding nuclear pro 95.5 0.0027 9.2E-08 52.3 0.3 23 108-130 12-34 (218)
485 2gks_A Bifunctional SAT/APS ki 95.4 0.01 3.4E-07 56.7 4.2 27 105-131 370-396 (546)
486 4dcu_A GTP-binding protein ENG 95.4 0.0047 1.6E-07 57.5 1.7 23 108-130 24-46 (456)
487 2x77_A ADP-ribosylation factor 95.4 0.0069 2.3E-07 48.5 2.5 24 106-129 21-44 (189)
488 3eie_A Vacuolar protein sortin 95.4 0.012 4.1E-07 52.0 4.2 27 105-131 49-75 (322)
489 3l0o_A Transcription terminati 95.4 0.0099 3.4E-07 54.4 3.6 35 99-133 167-201 (427)
490 4b4t_K 26S protease regulatory 95.3 0.013 4.3E-07 54.4 4.4 29 104-132 203-231 (428)
491 4b4t_M 26S protease regulatory 95.3 0.013 4.6E-07 54.3 4.4 30 103-132 211-240 (434)
492 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.0092 3.2E-07 53.3 3.1 28 103-130 119-146 (331)
493 4b4t_L 26S protease subunit RP 95.3 0.013 4.4E-07 54.4 4.2 30 103-132 211-240 (437)
494 1yrb_A ATP(GTP)binding protein 95.2 0.032 1.1E-06 47.2 6.3 27 105-131 12-38 (262)
495 3r7w_A Gtpase1, GTP-binding pr 95.2 0.0098 3.3E-07 52.3 3.1 24 107-130 3-26 (307)
496 2qgz_A Helicase loader, putati 95.2 0.014 4.7E-07 51.5 4.1 25 107-131 152-176 (308)
497 3pfi_A Holliday junction ATP-d 95.2 0.011 3.9E-07 52.0 3.5 24 108-131 56-79 (338)
498 3hdt_A Putative kinase; struct 95.2 0.015 5.3E-07 48.9 4.1 25 107-131 14-38 (223)
499 1puj_A YLQF, conserved hypothe 95.2 0.011 3.8E-07 51.5 3.3 27 105-131 118-144 (282)
500 1um8_A ATP-dependent CLP prote 95.2 0.012 4.1E-07 53.0 3.7 25 107-131 72-96 (376)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=3.4e-30 Score=236.88 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=140.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
..++++||+|.|++.. +|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++... ++
T Consensus 2 ~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 2 ASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred CEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence 4689999999998643 7899999999999999999999999999999999996 888984 444211 11
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....+++++.. + .+.+++.++..+..+..+.........+.++++.+++. .+.++.++|+||+||+++++++..+|
T Consensus 75 r~ig~VfQ~~~-l-~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 75 RGVGMVFQSYA-L-YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp SCEEEECTTCC-C-CTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCCc-C-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 12233666542 2 23478878777766666654444445667888887775 35677899999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
++||+|||+..||+..++++.+.+. ..|||+||.++++
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 198 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 9999999999999977777666654 2389999986653
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=4.4e-30 Score=234.54 Aligned_cols=180 Identities=11% Similarity=0.166 Sum_probs=134.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------- 147 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------- 147 (270)
++++++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|++. |++|++ +++...
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3689999999998643 7899999999999999999999999999999999996 888884 333210
Q ss_pred C---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225 148 P---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 148 ~---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~ 222 (270)
. ...|. ++++.. + .+.+++.++..+.....+.........+.++++.+++. .+.++.++|+||+||++++++
T Consensus 76 ~~~~r~ig~-vfQ~~~-l-~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 76 PVRERRLGY-LVQEGV-L-FPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CGGGSCCEE-ECTTCC-C-CTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred chhhCCEEE-EeCCCc-C-CCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 1 12333 565532 2 23366666554433333333333345567788887775 356778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccchh
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETYF 265 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~~ 265 (270)
+..+|++|++|||+..||+..+.++.+.+. ..|||+||.++++
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999999999987777765332 3489999987653
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=1.6e-29 Score=231.17 Aligned_cols=185 Identities=16% Similarity=0.136 Sum_probs=139.5
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-----
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----- 147 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~----- 147 (270)
+.++++++||+|.|+.....+.+|+||||+|++||++||+||||||||||+|+|+|+++ |++|++ +++...
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 34579999999999753333557899999999999999999999999999999999996 888884 444211
Q ss_pred ------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 148 ------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~ 219 (270)
+...| +++++... .+.+++.++..+.....+.........+.++++.+++. .+.++.++|+||+||+++
T Consensus 98 ~~~~~~r~~Ig-~v~Q~~~l--~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIG-MIFQHFNL--LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEE-EECSSCCC--CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEE-EEeCCCcc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 11233 36665432 22367777776655555554333445567788887775 356788999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+++++.+|++||+|||+..||+..++.+.+++. ..|+|+|+.+..
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 999999999999999999999988777777765 238888887543
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=2.6e-29 Score=216.15 Aligned_cols=179 Identities=17% Similarity=0.098 Sum_probs=129.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C-C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P-P--- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~-p--- 149 (270)
++++++||++.|++.. +|+|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++... . +
T Consensus 3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 4699999999997632 6799999999999999999999999999999999985 777773 333211 1 0
Q ss_pred ------CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhh
Q 024225 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 150 ------~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~ 221 (270)
....+++++.... +.+++.++..+.....+.........+.++++.+++.. +.++..+|+||+||++++.
T Consensus 76 ~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 1122355543221 22455555544333333321222344567788777653 4566799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
++..+|+++|+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 9999999999999999999988777777765 23777887654
No 5
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=4.4e-29 Score=228.54 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=136.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
.+++++||++.|++.. +|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 2 VEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence 3589999999997533 6799999999999999999999999999999999996 888884 443211 11
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....+++++.. + .+.+++.++..+.....+.........+.++++.+++.. +.++.++|+||+||+++++++..+|
T Consensus 75 r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 75 RNVGLVFQNWA-L-YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp TTEEEECTTCC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcc-c-CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12233665532 2 234677777766555555433223345677888887753 5667799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++|++|||+..||+..++++.+.+. ..||++||.+++
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 197 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA 197 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 9999999999999987777776664 248999998654
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=4.5e-29 Score=216.15 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=128.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p--- 149 (270)
+++++||++.|+.......+|+|+||++++||++||+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 37899999999753322347899999999999999999999999999999999995 778874 333211 10
Q ss_pred -----CceEEeecCCCCccccccCcccChHHHHHhc---CCCCCccHHHHHHHHHhhccCC---CcCCCCCCcccCChhh
Q 024225 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (270)
Q Consensus 150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~---g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~ 218 (270)
....+++++.... +.+++.++........ +...........++++.+.+.. +.++..+|+||+||++
T Consensus 78 ~~~~~~~i~~v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHEEEECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 1123355554322 2245555554432221 1111122344566777777653 4567799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++.++..+|++||+|||+..||+...+.+.+++. ..|+++|+.+.
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~ 208 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Confidence 9999999999999999999999987777776664 23788888753
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=3.9e-29 Score=229.83 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=136.2
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------- 146 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------- 146 (270)
.+++++||+|.|++.. +|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++..
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 2 AGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred CEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence 3689999999997633 6799999999999999999999999999999999996 888884 33321
Q ss_pred -CCC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhh
Q 024225 147 -KPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 147 -~~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~ 221 (270)
..+ ....+++++.. + .+.+++.++..+.....+.........+.++++.+++. .+.++.++|+||+||+++++
T Consensus 75 ~~~~~~r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYA-L-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp ECCGGGSSEEEECSCCC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 111 11233555532 2 23467777777655555543322234567788877765 35677799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++..+|++|++|||+..||+..++++.+.+. ..|||+||.+++
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 203 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 9999999999999999999987777766654 248999998654
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=5.4e-29 Score=228.70 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=129.0
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
|.+++++||+|.|++.. +|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 44699999999997633 6799999999999999999999999999999999995 788874 333211 11
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....+++++.. ++ +.+++.++..+.....+.........+.++++.+++. .+.++.++|+||+||+++++++..+
T Consensus 82 ~r~ig~v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 82 DRNISMVFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 11223555432 22 2356555444322222222111224566778877765 3567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
|++|++|||+..||...++++.+.+. ..|||+||.+++
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999999987777776664 248999998654
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=3e-29 Score=229.44 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=132.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
.+++++||+|.|++.. +|+++||++++||+++|+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred cEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence 3589999999997633 7799999999999999999999999999999999995 888884 443211 11
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
....+++++.. ++ +++++.++..+..+..+.+.......+.++++.+++. .+.++.++|+||+||+++++++..+|
T Consensus 75 r~ig~v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 75 REVGMVFQNYA-LY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp TTEEEECSSCC-CC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12233555432 22 3366666555433222322112234567788887765 35677799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++|++|||+..||+..++.+.+.+. ..||++||.+++
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 9999999999999987777766654 248999998654
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=6.8e-29 Score=226.63 Aligned_cols=180 Identities=14% Similarity=0.249 Sum_probs=136.1
Q ss_pred ceEEeccchhhh-hhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC-
Q 024225 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p- 149 (270)
.+++++||+|.| ++.. +|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++... .+
T Consensus 13 ~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCChh
Confidence 579999999999 6533 7799999999999999999999999999999999995 888884 443211 11
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....+++++.. + .+.+++.++..+.....+.+.......+.++++.+++. .+.++.++|+||+||+++++++..+
T Consensus 86 ~r~ig~v~Q~~~-l-~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 86 KRNVGLVFQNYA-L-FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GSSEEEECGGGC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 11233555532 2 23467777776655544543222334567788887765 3567779999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
|++|++|||+..||...++.+.+.+. ..||++||.+++
T Consensus 164 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 99999999999999987777776654 248999998654
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=1.1e-28 Score=218.39 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=130.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
++++++||++.|++.. .+|+|+||++++||++||+||||||||||+|+|+|++. |++|++ +++....
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997521 26799999999999999999999999999999999995 777773 3332110
Q ss_pred ----CCceEEeecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhh
Q 024225 149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 149 ----p~~g~~i~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~ 221 (270)
...| +++++.. .++ .+++.++..+.....+.........+.++++.+++. .+.++..+|+||+||++++.
T Consensus 80 ~~~~~~ig-~v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 80 MKLRESIG-IVFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHSEE-EECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEE-EEEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 1123 3555432 112 245555555544444443322334566777777765 35567799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
++..+|++||+|||+..||+...+.+.+++. ..|+++|+.+..
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 9999999999999999999977766666554 237888887653
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=7.9e-29 Score=226.38 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=133.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC--------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-------- 146 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-------- 146 (270)
.+++++||+|.|++ ....+|+|+||++++||+++|+||||||||||+|+|+|++. |++|++ +++..
T Consensus 2 ~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 2 VRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEES
T ss_pred cEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccccc
Confidence 35899999999975 22116799999999999999999999999999999999995 888884 33321
Q ss_pred CCC--CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhh
Q 024225 147 KPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 147 ~~p--~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~ 222 (270)
..+ ....+++++.. + .+.+++.++..+.....+.+.......+.++++.+++. .+.++.++|+||+||++++++
T Consensus 77 ~~~~~r~ig~v~Q~~~-l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWA-L-YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSC-C-CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 111 11233665532 2 23366666655433333332222234567788877765 356777999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+..+|++|++|||+..||+..++++.+.+. ..||++||.+++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999988777777664 248999998654
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=1.7e-28 Score=215.83 Aligned_cols=179 Identities=14% Similarity=0.148 Sum_probs=128.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
++++++||++.|++.. +|+|+||++++||++||+||||||||||+|+|+|+++ |++|++ +++.... .
T Consensus 23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence 4699999999997633 6799999999999999999999999999999999995 788874 3332110 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~ 222 (270)
....+++++... .+.+++.++..+.. ...+.........+.++++.+++.. +.++..+|+||+||++++.+
T Consensus 96 ~~~~~~i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 96 NKVREEVGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 012335555332 12345555554422 2233321112334567777776643 45667999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+..+|++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 999999999999999999988777777765 23777877644
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.5e-28 Score=215.37 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=129.7
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---- 148 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---- 148 (270)
.|++++++||++.|++.. +|+++||++++|+++||+||||||||||+|+|+|+++ |++|++ +++....
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 467899999999997533 6799999999999999999999999999999999985 778874 3332111
Q ss_pred ---CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhh
Q 024225 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 149 ---p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l 223 (270)
...+ ++.++.... +.+++.++..+.....+.........+.++++.+++.. +.++..||+||+||++++.++
T Consensus 85 ~~~~~i~-~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 85 EVRKLIS-YLPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHTTEE-EECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcEE-EEcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1123 355554322 23566665554433333321111234567777777653 456679999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
..+|++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 208 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE 208 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 99999999999999999987777777665 23677777643
No 15
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=6.5e-28 Score=206.02 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=128.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--CCCce
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK--PPDVA 152 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~--~p~~g 152 (270)
..++++||++.|++ . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|++ +++... .....
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 46899999999975 3 7899999999999999999999999999999999985 777774 333110 00112
Q ss_pred EEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 153 ~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
.++.++.... ..+++.++..+.....+. . .+...+.++++.+++.. +..+..+|+||+||++++.++..+++++|
T Consensus 81 ~~v~q~~~~~--~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIVP--RKISVEDYLKAVASLYGV-K-VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCCC--TTSBHHHHHHHHHHHTTC-C-CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcCC--CCCCHHHHHHHHHHhcCC-c-hHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2355443321 224555555443333333 2 22456677888887654 45566899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
+|||+..+|+..++.+.+++. ..|+++|+.+.
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999988777777665 23778887653
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=2.9e-28 Score=213.73 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=127.2
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP---- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p---- 149 (270)
+++++++||++.|++.. +|+|+||++++||++||+||||||||||+|+|+|++. |++|++ +++.....
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 35799999999997633 7799999999999999999999999999999999995 777773 33321110
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHhhccCC--CcCCCCCC
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQG--SVYAPSFD 210 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S 210 (270)
....+++++.... +.+++.++..+.... .+ .........+.++++.+++.. +..+..+|
T Consensus 78 ~~~~~~i~~v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHTEEECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHhCCEEEEccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 0122244443211 224544444332111 12 111112234567777776643 45667999
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY 264 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~ 264 (270)
+||+||++++.++..+|++||+|||+..||+...+.+.+++. ..|+++|+.+..
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 999999999999999999999999999999988777777765 237888887543
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.94 E-value=3.2e-28 Score=214.48 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=126.7
Q ss_pred cceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----
Q 024225 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP---- 149 (270)
Q Consensus 75 ~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p---- 149 (270)
+++++++||++.|++.. +|+|+||++++||++||+||||||||||+|+|+|++. |++|++ +++.....
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 35799999999998743 7799999999999999999999999999999999995 777773 33321110
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhc
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~ 224 (270)
....++.++....+ .+++.++..+..... ..........++++.+.+.. +.++..+|+||+||++++.++.
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11222444433211 134444332221111 22233455677788777653 4566789999999999999999
Q ss_pred c------CCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 225 L------QHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 225 ~------~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
. +|++||+|||+..||+.....+.+++. ..|+++||.+.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 8 999999999999999987777776664 23778888754
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=3.5e-28 Score=213.76 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=128.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC-------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------- 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------- 148 (270)
+++++||++.|++.. +|+|+||++++|+++||+||||||||||+|+|+|+++ |++|++ +++....
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999997633 6799999999999999999999999999999999995 778874 3332111
Q ss_pred -----C--------CceEEeecCCCCccccccCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccCC---CcCCCCCCc
Q 024225 149 -----P--------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDH 211 (270)
Q Consensus 149 -----p--------~~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~l~~~~---~~~~~~~S~ 211 (270)
+ ....+++++... .+.+++.++..+.. ...+.........+.++++.+++.. +.++..+|+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 0 012335555322 12355655554422 2223321112344567788777643 456679999
Q ss_pred ccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 212 g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
||+||++++.++..+|++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999987777777664 23777887644
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=6.1e-28 Score=220.00 Aligned_cols=173 Identities=14% Similarity=0.168 Sum_probs=132.4
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC---C
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---D 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p---~ 150 (270)
++++||++.|++ . +++++||++++||+++|+||||||||||+|+|+|++. |++|++ +++... .+ .
T Consensus 2 l~~~~l~~~y~~----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 2 IEIESLSRKWKN----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp EEEEEEEEECSS----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHT
T ss_pred EEEEEEEEEECC----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhCc
Confidence 789999999965 2 6799999999999999999999999999999999995 888884 343211 11 2
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
.|. ++++.. + .+.+++.++..+.....+.... ..+.++++.+++.. +.++.++|+||+||+++++++..+|+
T Consensus 74 ig~-v~Q~~~-l-~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 74 IAF-VYQNYS-L-FPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp CEE-ECTTCC-C-CTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred EEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 333 555432 2 2346777777665444444322 56778888887753 56777999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
+|++|||+..||+..++.+.+.+. ..||++||.++.
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999987777776664 248999997654
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=2.5e-27 Score=205.78 Aligned_cols=178 Identities=16% Similarity=0.086 Sum_probs=125.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC-C--C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-P--P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-~--p-- 149 (270)
++++++||++.|++.. +|+++||++++||++||+||||||||||+|+|+|+++ |++|++ +++... . +
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 3699999999997632 6799999999999999999999999999999999985 788884 333211 0 0
Q ss_pred ---CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cC--CCcCCCCCCcccCChhhhhhhh
Q 024225 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 150 ---~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~-~~--~~~~~~~~S~g~~~rv~~~~~l 223 (270)
....+++++.... ..+++.++..+.. ............+.++++.+. +. .+.++..+|+||+||++++.++
T Consensus 78 ~~~~~i~~v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 78 INRMGIALVPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 1123355554221 2245544443321 111111112234456666653 32 3566779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
..+|++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999999999999999987777777664 23788888643
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=3.3e-27 Score=207.95 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=126.8
Q ss_pred eEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC----CC
Q 024225 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP----PD 150 (270)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~----p~ 150 (270)
+++++||++.|+ +......+|+|+||++++|+++||+||||||||||+|+|+|++. |++|++ +++.... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 488999999997 21000226799999999999999999999999999999999985 777774 3332110 01
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC----CCcCCCCCCcccCChhhhhhhhccC
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~----~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
...++.++..... ..+++.++..+..... .........+.++++.+++. .+..+..+|+||+||++++.++..+
T Consensus 79 ~i~~v~q~~~~~~-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 79 NIGIAFQYPEDQF-FAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp GEEEECSSGGGGC-CCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hEEEEeccchhhc-CCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 1223555421111 1144444433321111 22223345667888888776 3556679999999999999999999
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
|++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~ 200 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999999999988777777665 23778887654
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=9.6e-28 Score=212.79 Aligned_cols=181 Identities=14% Similarity=0.019 Sum_probs=122.8
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC--C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--P--- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~--p--- 149 (270)
++++++||++.|++.. +|+|+||++++||++||+||||||||||+|+|+|+++ |++|++ +++.... .
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3699999999997632 6799999999999999999999999999999999995 667763 3332111 0
Q ss_pred ----CceEEeecCCCCccccccCcccChHHHHHh----cCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhh
Q 024225 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (270)
Q Consensus 150 ----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~----~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~ 219 (270)
....++.++........+++.++..+.... ++.........+.++++.+++. .+.++..+|+||+||+++
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 012224443221111112333333221000 0111111123456677777664 345677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cc--eEEeccccc
Q 024225 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EK--CYATSFKET 263 (270)
Q Consensus 220 ~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~--i~v~~~~~~ 263 (270)
+.++..+|++||+|||+..||+..++.+.+++. .. |+++|+.+.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 999999999999999999999987777777664 23 678888654
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.93 E-value=2.8e-27 Score=206.98 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred ceEEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~ 154 (270)
++++++||++.|+ +.. +|+++||++++|+++||+||||||||||+|+|+|+++ |++|++.. ....+ +
T Consensus 3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~-~ 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIG-F 70 (253)
T ss_dssp EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEE-E
T ss_pred ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEE-E
Confidence 3689999999997 532 6799999999999999999999999999999999985 66676431 11223 2
Q ss_pred eecCCCCccccccCcccChHHHHHh-cCC---CCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCc
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
++++..... .+++.++..+.... .+. ....+...+.++++.+++. .+..+..+|+||+||++++.++..+|+
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 555443221 24555544332211 121 1112234456777777664 345667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
+||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999987777777664 23778887654
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=1.1e-26 Score=202.94 Aligned_cols=180 Identities=18% Similarity=0.075 Sum_probs=117.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCccc-CCCCCCC--C-
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASS-FDSQVKP--P- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl--l~~~~~~~G~~-~~~~~~~--p- 149 (270)
++++++||++.|++.. +|+|+||++++|+++||+||||||||||+|+|+|+ +. |++|++ +++.... +
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 2 SQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP 74 (250)
T ss_dssp CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred ceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence 3689999999997632 67999999999999999999999999999999998 53 566663 3321110 0
Q ss_pred -----CceEEeecCCCCccccccCcccChHHHHH-hcCCCC--CccHHHHHHHHHhhccC---CCcCCCC-CCcccCChh
Q 024225 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDPV 217 (270)
Q Consensus 150 -----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~-~~g~~~--~~~~~~~~~~l~~l~~~---~~~~~~~-~S~g~~~rv 217 (270)
....+++++.... +.+++.++..+... ..+... ......+.++++.+++. .+.++.. +|+||+||+
T Consensus 75 ~~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHHHTTBCCCCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHHHhCcEEEeccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 0011123332211 12333333332221 111110 11123455677777763 2445567 999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccch
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKETY 264 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~~ 264 (270)
+++.++..+|++||+|||+..||+..++.+.+++. ..|+++|+.+..
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 99999999999999999999999988777777765 237888887543
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=1.7e-26 Score=203.61 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=121.3
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP 149 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p 149 (270)
..++++++||++.|++.. +|+|+||++++|+++||+||||||||||+|+|+|++. ..|++|++ +++... .+
T Consensus 17 ~~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp ---CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEGGGSCH
T ss_pred CCceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCcCCH
Confidence 345799999999997532 6799999999999999999999999999999999841 01566663 333110 00
Q ss_pred ----C-ceEEeecCCCCccccccCcccChHHHHHh----cCCCC-C--ccHHHHHHHHHhhccCC---CcCCC-CCCccc
Q 024225 150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW-T--FNPLLLLNCLKNLRNQG---SVYAP-SFDHGV 213 (270)
Q Consensus 150 ----~-~g~~i~~dg~~~~~~~l~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~l~~l~~~~---~~~~~-~~S~g~ 213 (270)
. ...++.++.... +.+++.++....... .+... . .....+.++++.+++.. +.++. .+|+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HHHHHHTEEEECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHH
T ss_pred HHHhhCCEEEEccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence 0 012244443221 123333333222110 12110 0 11234567777777642 34444 499999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
+||++++.++..+|++||+|||+..||+..++.+.+++.. .|+++|+.+.
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 9999999999999999999999999999888888887652 3777887654
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=1.2e-26 Score=202.26 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=114.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
-++++||++.|++.. ..+|+++||++++||++||+||||||||||+|+|+|++. |++|++ +++.... +
T Consensus 7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 488999999993211 126799999999999999999999999999999999984 666663 3321110 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~~ 215 (270)
....+++++... +. .++.++.. ++.. ......+.+.++.+... ....+..+|+||+|
T Consensus 82 ~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 152 (247)
T 2ff7_A 82 RRQVGVVLQDNVL-LN--RSIIDNIS-----LANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 152 (247)
T ss_dssp HHHEEEECSSCCC-TT--SBHHHHHT-----TTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred HhcEEEEeCCCcc-cc--ccHHHHHh-----ccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence 011224443321 11 12222111 1111 12223333444433321 11234689999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
|+++++++..+|++||+|||+..||+..++.+.+++.. .|+++|+.+.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 99999999999999999999999999888887777752 3778887654
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=1.3e-26 Score=204.68 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=115.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p-- 149 (270)
.+++++||++.|++.. ...+|+++||++++|++++|+||||||||||+|+|+|++. |++|++ +++.... +
T Consensus 15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence 4699999999997511 1226799999999999999999999999999999999984 666663 2321100 0
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHH---------HHHHHHhh--ccC--CCcCCCCCCcccC
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVG 214 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---------~~~~l~~l--~~~--~~~~~~~~S~g~~ 214 (270)
....+++++... +. .++.++.. ++......... +.++++.+ ++. .+.++..+|+||+
T Consensus 91 ~~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~ 162 (271)
T 2ixe_A 91 LHTQVAAVGQEPLL-FG--RSFRENIA-----YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR 162 (271)
T ss_dssp HHHHEEEECSSCCC-CS--SBHHHHHH-----TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred HhccEEEEecCCcc-cc--ccHHHHHh-----hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence 012224443321 11 13322221 12111011011 12334444 221 2445679999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||+++++++..++++||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999988777777664 13677777653
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.93 E-value=6.1e-27 Score=203.32 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=117.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC------CCC
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------PPD 150 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~------~p~ 150 (270)
++++||++.|++ .|+|+||++++ +++||+||||||||||+|+|+|++. |++|++ +++... ...
T Consensus 2 l~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 2 FLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp CEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSC
T ss_pred EEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhCc
Confidence 688999999964 37999999999 9999999999999999999999985 667763 332110 111
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCc
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
.+. ++++... .+.+++.++..+.....+. ......+.++++.+++.. +.++..+|+||+||++++.++..+|+
T Consensus 72 i~~-v~q~~~l--~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 72 IGF-VPQDYAL--FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CBC-CCSSCCC--CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEE-EcCCCcc--CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 222 3333221 1113333322211100010 011234567777777653 45667999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 229 ilIld~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
++|+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999987777776654 23778887643
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=3.2e-26 Score=198.44 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=115.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
.+++++||++.|+... ..+|+++||++++|++++|+||||||||||+|+|+|++. |++|++ +++ ..+ +
T Consensus 2 ~~l~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~-~ 70 (237)
T 2cbz_A 2 NSITVRNATFTWARSD--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVA-Y 70 (237)
T ss_dssp CCEEEEEEEEESCTTS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEE-E
T ss_pred CeEEEEEEEEEeCCCC--CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEE-E
Confidence 3589999999997311 226799999999999999999999999999999999985 666663 332 122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHH---HHhhccC-------CCcCCCCCCcccCChhhhhhhh
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~---l~~l~~~-------~~~~~~~~S~g~~~rv~~~~~l 223 (270)
++++.. ++ ..++.++.. ++.. .........+. .+.+... ....+..+|+||+||+++++++
T Consensus 71 v~Q~~~-~~--~~tv~enl~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 71 VPQQAW-IQ--NDSLRENIL-----FGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp ECSSCC-CC--SEEHHHHHH-----TTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EcCCCc-CC--CcCHHHHhh-----CccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 444432 11 233333222 1111 11111122221 1222211 1345669999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChhhHHHHHHhhc---------cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD---------EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~~~~~l~~~~~---------~~i~v~~~~~~ 263 (270)
..+|+++|+|||+..||+..++.+.+.+. ..|+++|+.+.
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 99999999999999999999888888772 23778887654
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=2.4e-26 Score=206.07 Aligned_cols=172 Identities=15% Similarity=0.073 Sum_probs=112.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP------ 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p------ 149 (270)
.++++||++.|++. ..+|+|+||+|++|+++||+||||||||||+++|+|++. |++|++ +++.....
T Consensus 53 ~i~~~~vs~~y~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 53 RIEFENVHFSYADG---RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CEEEEEEEEESSTT---CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred eEEEEEEEEEcCCC---CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence 59999999999642 126799999999999999999999999999999999994 555542 22211000
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~ 215 (270)
....+++++... +. .++.++. .++... .....+.+.++.... +. ......+|+||+|
T Consensus 127 r~~i~~v~Q~~~l-f~--~Tv~eNi-----~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ 197 (306)
T 3nh6_A 127 RSHIGVVPQDTVL-FN--DTIADNI-----RYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197 (306)
T ss_dssp HHTEEEECSSCCC-CS--EEHHHHH-----HTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH
T ss_pred hcceEEEecCCcc-Cc--ccHHHHH-----Hhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH
Confidence 011224443321 11 1222211 122111 122223333332221 11 1233589999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
|+++++++..++++||+|||+..||+...+.+.+.+. ..|+|+|+.+.
T Consensus 198 RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 9999999999999999999999999987777777665 33778877643
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=9.2e-26 Score=198.40 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=126.4
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCC-----CCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-----KPPD 150 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~-----~~p~ 150 (270)
+++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++ |++|++ +++.. ....
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence 37899999999751000126799999999 9999999999999999999999986 788884 33311 1112
Q ss_pred ceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-C--CcCCCCCCcccCChhhhhhhhccCC
Q 024225 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-G--SVYAPSFDHGVGDPVEDDILVGLQH 227 (270)
Q Consensus 151 ~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-~--~~~~~~~S~g~~~rv~~~~~l~~~~ 227 (270)
.+.++.++... .+++.++..+..... ......+.++++.+++. . +.++..+|+||+||++++.++..+|
T Consensus 76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 22034444332 255555554433221 22345667888888776 3 4566799999999999999999999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225 228 KVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET 263 (270)
Q Consensus 228 ~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~ 263 (270)
+++++|||+..||+..++.+.+++.. .|+++|+.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 99999999999999888888877763 4778888654
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=1.4e-25 Score=194.95 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=117.0
Q ss_pred EEeccchhhhh-hhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 78 l~~~~l~~~y~-~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
++++||++.|+ +. .+|+++||++++|++++|+||||||||||+++|+|+++ |++|++ +++...
T Consensus 2 l~~~~l~~~y~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYDDSE----QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSSSSS----CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeCCCC----ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 78999999994 32 26799999999999999999999999999999999995 788884 333110
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-------------cCCCCCCcccC
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGVG 214 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-------------~~~~~~S~g~~ 214 (270)
....+. ++++... +. .++.++.. ++.........+.+.++.+..... ..+..+|+||+
T Consensus 75 ~~~i~~-v~q~~~l-~~--~tv~enl~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 75 RSQIGF-VSQDSAI-MA--GTIRENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp TTTCCE-ECCSSCC-CC--EEHHHHTT-----SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HhhEEE-EcCCCcc-cc--ccHHHHHh-----hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 112233 5555432 11 23322221 121112233445566666655321 12358999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
||+++++++..+++++|+|||+..||+...+.+.+++. ..|+++|+.+
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 199 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 99999999999999999999999999966665555554 2477787764
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=1e-25 Score=194.24 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=112.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
.+++++||++.|+... ..+|+++||++++|++++|+||||||||||+|+|+|+++ |++|++ +++ ..+ +
T Consensus 5 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~-~ 73 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS-F 73 (229)
T ss_dssp EEEEEEEEEECSSTTS--CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEE-E
T ss_pred ceEEEEEEEEEeCCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEE-E
Confidence 4699999999996321 236799999999999999999999999999999999984 555553 222 122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhh
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~ 221 (270)
++++... +. .++.++. .++.. .........++.... +. ......+|+||+||+++++
T Consensus 74 v~q~~~~-~~--~tv~enl-----~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENI-----IFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHH-----HTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHh-----hccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 3433321 11 1332222 12211 111122222222211 11 1124689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~~ 263 (270)
++..+++++|+|||+..+|+..++.+.+. +. ..|+++|+.+.
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 99999999999999999999999999885 32 23777777643
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=1.5e-25 Score=196.81 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=115.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---C---
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---P--- 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~--- 148 (270)
.+++++||++.|++.. ...+|+++||++++|+++||+||||||||||+|+|+|++. + +|++ +++... .
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3589999999997521 1236799999999999999999999999999999999983 3 5663 333110 0
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-------------CCcCCCCCCcccC
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG 214 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~~S~g~~ 214 (270)
.....++.++... +. .++.++.. ++.. ........+.++.+.+. ...++..+|+||+
T Consensus 91 ~~~~i~~v~Q~~~l-~~--~tv~enl~-----~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 91 IRSIIGIVPQDTIL-FN--ETIKYNIL-----YGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHTTEEEECSSCCC-CS--EEHHHHHH-----TTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HhccEEEEcCCCcc-cc--cCHHHHHh-----ccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 0112224444322 11 23322221 1211 11223333444333221 0134568999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
||+++++++..+++++|+|||+..||+...+.+.+++.. .|+++|+.+.
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 999999999999999999999999999888877777652 3778887654
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.3e-26 Score=209.52 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=117.4
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC---CC--
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP-- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~---~p-- 149 (270)
..++++||+|.|+... ..+|+|+||+|++||+++|+||||||||||+|+|+|++ +++|++ +++... .+
T Consensus 18 ~~i~~~~l~~~y~~~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGG--NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCEEEEEEEEESSSSS--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred CeEEEEEEEEEecCCC--eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence 4599999999995311 23789999999999999999999999999999999997 345552 333211 00
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCC-----------CCcccC
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPS-----------FDHGVG 214 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~-----------~S~g~~ 214 (270)
....+++++.. ++. .++.+ +..+........+.++++.+.+.. +.++.. +|+||+
T Consensus 92 ~rr~ig~v~Q~~~-lf~--~tv~e-------nl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 92 WRKAFGVIPQKVF-IFS--GTFRK-------NLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHTEEEESCCCC-CCS--EEHHH-------HHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HhCCEEEEcCCcc-cCc--cCHHH-------HhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 11122443322 111 12221 222212223345556666665532 334444 999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||+++++++..+|++|++|||+..||+..++++.+.+.. .|+++|+.+
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 999999999999999999999999999888888877762 378888754
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=2.5e-24 Score=187.85 Aligned_cols=168 Identities=17% Similarity=0.094 Sum_probs=116.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
+++++||++. . +|+++||++++|++++|+||||||||||+|+|+|+++ |+ |++ +++.... +
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6899999987 2 7899999999999999999999999999999999984 55 663 3321100 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
....++.++.... ..+++.++.. ++.........+.++++.+++.. +..+..+|+||+||++++.++..+
T Consensus 72 ~~~i~~v~q~~~~~--~~~tv~e~l~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPP--FATPVWHYLT-----LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCC--TTCBHHHHHH-----TTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccC--CCCcHHHHHH-----HhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 0112244433211 1133333222 11100012445667777776643 456679999999999999999999
Q ss_pred Cc-------EEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 227 HK-------VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 227 ~~-------ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
++ +||+|||+..||+..++.+.+++. ..|+++|+.+.
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 195 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH 195 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99 999999999999987777777664 23777777643
No 37
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=4.2e-25 Score=198.73 Aligned_cols=173 Identities=23% Similarity=0.302 Sum_probs=126.1
Q ss_pred eEEeccchhhhhhhhccc-----------------ccccccce-ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 024225 77 VVEARCMDEVYDALAQRL-----------------LPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v-----------------~~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~ 138 (270)
.|++++|++.|....+.+ +.+ +++. ++++|+++||+||||||||||+++|+|++. |+.
T Consensus 43 ~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~---~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGE-PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA---RWD 118 (312)
T ss_dssp CCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH---TST
T ss_pred eEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcc-cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc---ccC
Confidence 478899999996422110 111 2223 289999999999999999999999999995 332
Q ss_pred cccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-cCCCCCCcccCChh
Q 024225 139 ASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217 (270)
Q Consensus 139 G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~~rv 217 (270)
| ... ..++.+|+++... +..++... ...+|.+..++...+.++++.+..+.. ..++.||+|++||+
T Consensus 119 G--------~~~-v~~v~qd~~~~~~---t~~e~~~~-~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv 185 (312)
T 3aez_A 119 H--------HPR-VDLVTTDGFLYPN---AELQRRNL-MHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDII 185 (312)
T ss_dssp T--------CCC-EEEEEGGGGBCCH---HHHHHTTC-TTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEE
T ss_pred C--------CCe-EEEEecCccCCcc---cHHHHHHH-HHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhh
Confidence 2 122 3458999875432 22221111 112455666777888888988885543 67899999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNR 267 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r 267 (270)
+++.++..++++||+||+++++|+.. ..+.+++|..|||+++.+.++.|
T Consensus 186 ~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R 234 (312)
T 3aez_A 186 PGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQW 234 (312)
T ss_dssp EEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHH
T ss_pred hhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHH
Confidence 99999999999999999999997311 36788899999999999886655
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.89 E-value=1.7e-23 Score=202.93 Aligned_cols=174 Identities=15% Similarity=0.096 Sum_probs=118.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC------
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~------ 148 (270)
..++++||++.|++.. ..+|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++....
T Consensus 340 ~~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred CeEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence 3599999999997521 126799999999999999999999999999999999995 777773 3332110
Q ss_pred -CCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC---------C----cCCCCCCcccC
Q 024225 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG 214 (270)
Q Consensus 149 -p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~---------~----~~~~~~S~g~~ 214 (270)
.....+++++... +. .+..++.. ++.....+.+.+.+.++.++... + .....+|+||+
T Consensus 415 ~~~~i~~v~Q~~~l-~~--~tv~eni~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 415 LRRHFALVSQNVHL-FN--DTIANNIA-----YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HhcCeEEEcCCCcc-cc--ccHHHHHh-----ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 0112235555432 11 13322221 12101223344444544443321 1 12358999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||+++++++..+|+++|+|||+..+|+...+.+.+.++. .|+++|+.+
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 999999999999999999999999999888777777652 377888764
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=7.9e-24 Score=205.03 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=112.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C---
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P--- 149 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p--- 149 (270)
.++++||++.|++.. ..+|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 589999999997522 236799999999999999999999999999999999993 445542 2221000 0
Q ss_pred -CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CCC----cCCCCCCcccCC
Q 024225 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (270)
Q Consensus 150 -~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~~S~g~~~ 215 (270)
....+++++... +. .+..++. .+|.+. ...+...+.++.... +.+ .....+|+||+|
T Consensus 414 r~~i~~v~Q~~~l-~~--~tv~eni-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 RNQIGLVQQDNIL-FS--DTVKENI-----LLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHTEEEECSSCCC-CS--SBHHHHH-----GGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhheEEEeCCCcc-Cc--ccHHHHH-----hcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 011223333321 11 1222211 122221 122333333332221 111 123479999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 216 rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
|+++++++..+|+++|+|||+..+|+...+.+.+.++ ..|+++|+.+.
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 9999999999999999999999999987777777664 33778887654
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.88 E-value=1.4e-23 Score=186.99 Aligned_cols=162 Identities=12% Similarity=0.143 Sum_probs=99.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
+.++++||++.+. .+|+++||++++|++++|+||||||||||+|+|+|++. |++|++ +++ ..+ +
T Consensus 39 ~~l~~~~l~~~~~------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~-~ 103 (290)
T 2bbs_A 39 DSLSFSNFSLLGT------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS-F 103 (290)
T ss_dssp -----------CC------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEE-E
T ss_pred ceEEEEEEEEcCc------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEE-E
Confidence 4589999998541 26799999999999999999999999999999999984 556653 222 122 2
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------CC----CcCCCCCCcccCChhhhhh
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDI 221 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~~S~g~~~rv~~~~ 221 (270)
++++... +. .++.++. . +.. .........++.+.. +. ......+|+||+||+++++
T Consensus 104 v~Q~~~l-~~--~tv~enl----~--~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 104 CSQNSWI-MP--GTIKENI----I--GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp ECSSCCC-CS--SBHHHHH----H--TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred EeCCCcc-Cc--ccHHHHh----h--Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 4444321 11 1332222 1 221 111122222222211 10 1124689999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChhhHHHHHHh-hc------cceEEeccccc
Q 024225 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKCYATSFKET 263 (270)
Q Consensus 222 ~l~~~~~ilIld~~~~~lDe~~~~~l~~~-~~------~~i~v~~~~~~ 263 (270)
++..+++++|+|||+..+|+..++.+.+. +. ..|+++|+.+.
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 99999999999999999999999999885 32 24777777643
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=1.6e-23 Score=203.06 Aligned_cols=175 Identities=13% Similarity=0.090 Sum_probs=118.1
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC-----
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----- 149 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----- 149 (270)
..++++||++.|++.. ..+|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++.....
T Consensus 340 ~~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred CcEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence 3599999999997421 226799999999999999999999999999999999994 666663 33311100
Q ss_pred --CceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---------C----CcCCCCCCcccC
Q 024225 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG 214 (270)
Q Consensus 150 --~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---------~----~~~~~~~S~g~~ 214 (270)
....+++++... +. .+..++.. ++.....+.+.+.+.++.++.. . ......+|+||+
T Consensus 415 ~~~~i~~v~Q~~~l-~~--~tv~eni~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 415 LRNQVALVSQNVHL-FN--DTVANNIA-----YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp HHHTEEEECSSCCC-CS--SBHHHHHH-----TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred HHhhCeEEccCCcC-CC--CCHHHHHh-----ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 012234544432 11 13322221 1210122334444555443321 1 123458999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKET 263 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~~ 263 (270)
||+++++++..+|+++|+|||+..+|+...+.+.+.++. .|+++|+.+.
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 999999999999999999999999999887777776652 3788887653
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.4e-23 Score=203.57 Aligned_cols=168 Identities=17% Similarity=0.081 Sum_probs=113.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++.. ..+|+|+||++++||++||+||||||||||+++|+|++ +|+.|. |.
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~----------------~~~~G~-i~ 401 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI----------------DPERGR-VE 401 (587)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS----------------CCSEEE-EE
T ss_pred cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc----------------cCCCcE-EE
Confidence 599999999996522 23679999999999999999999999999999999999 455555 55
Q ss_pred cCCCCccccccCc--------ccCh----HHHHHhcCCC-CCccHHHHHHHHHhhc---------cCC----CcCCCCCC
Q 024225 157 MDGFHLYLSQLDA--------MEDP----KEAHARRGAP-WTFNPLLLLNCLKNLR---------NQG----SVYAPSFD 210 (270)
Q Consensus 157 ~dg~~~~~~~l~~--------~~~~----~~~~~~~g~~-~~~~~~~~~~~l~~l~---------~~~----~~~~~~~S 210 (270)
+||.++....... .+++ .-.+.+..+. .....+...+.++... .+. ......+|
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 5555433210000 0000 0011121111 1122222222222211 111 22446899
Q ss_pred cccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 211 ~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
+||+||+++++++..+|+++|+|||+..+|+...+.+.+.++ ..|+|+|+.+.
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 999999999999999999999999999999988888777765 33788887654
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.6e-23 Score=203.67 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=111.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++. ..+|+|+||++++||++||+||||||||||+++|+|++ +|+.|. |.
T Consensus 354 ~i~~~~v~~~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~----------------~p~~G~-i~ 413 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK---KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY----------------DVDRGQ-IL 413 (598)
T ss_dssp CEEEEEEECCSSSS---SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS----------------CCSEEE-EE
T ss_pred eEEEEEEEEECCCC---CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc----------------CCCCeE-EE
Confidence 48999999999742 22679999999999999999999999999999999999 555565 55
Q ss_pred cCCCCccccccCcccChHHHHHhcCC-CCCc------------------cHHHHHHHHHhhcc---------CCCc----
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTF------------------NPLLLLNCLKNLRN---------QGSV---- 204 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~------------------~~~~~~~~l~~l~~---------~~~~---- 204 (270)
+||.++... .....++..++ +++. +.+...+.++.... +.+.
T Consensus 414 ~~g~~i~~~------~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 414 VDGIDIRKI------KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp ETTEEGGGS------CHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred ECCEEhhhC------CHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 565543321 01112222332 1111 11112222211111 1010
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
....+|+||+||+++++++..+|+++|+|||+..+|+...+.+.+.+. ..|+|+|+.+.
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 114799999999999999999999999999999999987777777665 34788887653
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=1.7e-23 Score=203.37 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=117.9
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCC---C----
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP---P---- 149 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~---p---- 149 (270)
++++||++.|++.. ...+|+|+||++++||++||+||||||||||+++|+|++. |++|++ +++.... +
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 89999999997521 1236799999999999999999999999999999999994 666663 3332110 0
Q ss_pred CceEEeecCCCCccccccCcccChHHHHHhcCCCC--CccHHHHHHHHHhhcc---------CCCc----CCCCCCcccC
Q 024225 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (270)
Q Consensus 150 ~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~~ 214 (270)
....++.++... +. .+..++.. ++.+. ..+.+.+.+.++.++. +.+. ....+|+||+
T Consensus 418 ~~i~~v~Q~~~l-~~--~tv~eni~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 418 SKIGTVSQEPIL-FS--CSIAENIA-----YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp HSEEEECSSCCC-CS--SBHHHHHH-----TTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred hceEEEccCCcc-cC--CCHHHHHh-----hcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHH
Confidence 012235554432 11 23322221 22221 1334445555554432 1122 2368999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
||+++++++..+|+++|+|||+..+|+...+.+.+.+.. .|+++|+.+
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred HHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 999999999999999999999999999887777776652 477787764
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.84 E-value=2.4e-21 Score=188.33 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=122.6
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++|+++.|++ + .|++++|++++||++||+||||||||||+|+|+|++. |++|++.-. ...+ ++
T Consensus 356 ~~l~~~~l~~~~~~----~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~----~~i~-~v 422 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD----LTVA-YK 422 (607)
T ss_dssp EEEEECCEEEECSS----C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC----CCEE-EE
T ss_pred eEEEEeceEEEecc----e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe----eEEE-EE
Confidence 46999999999975 2 4688999999999999999999999999999999986 888885321 1233 36
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
+++.... ..+++.+........ .. .+.....++++.+++.. +..+..+|+||+||++++.++..++++||+|
T Consensus 423 ~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 423 PQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6554321 224443322211000 00 12234566777777653 4566799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||+..||...+..+.++++ ..|+|+||.+.
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999987777777665 23788888654
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=1.4e-21 Score=187.45 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=118.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++++++.|++. .+..++|++++||++||+||||||||||+|+|+|+++ |++|++.... ...+. +
T Consensus 268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~---~~i~~-~ 335 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK---QILSY-K 335 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC---CCEEE-E
T ss_pred ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC---eeeEe-e
Confidence 468999999999762 3577799999999999999999999999999999995 7777753211 11122 3
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
.++-.. ....++.++.... ...... .......++++.+.+. .+.++..+||||+||++++.++..+|++||+|
T Consensus 336 ~q~~~~--~~~~tv~~~l~~~--~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 336 PQRIFP--NYDGTVQQYLENA--SKDALS-TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp CSSCCC--CCSSBHHHHHHHH--CSSTTC-TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred chhccc--ccCCCHHHHHHHh--hhhccc-hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 333211 1113333322221 111111 1123344555555543 35567799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
||+..||...+..+.+++. ..|+|+||.+..
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999987777666664 237888887543
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=2.6e-21 Score=185.88 Aligned_cols=169 Identities=15% Similarity=0.058 Sum_probs=121.3
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++|+++.|++ + .+++++|++++||++||+||||||||||+|+|+|+++ |++|++.. ....+ ++
T Consensus 286 ~~l~~~~l~~~~~~----~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~-~v 352 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----F-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVA-YK 352 (538)
T ss_dssp EEEEECCEEEEETT----E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEE-EE
T ss_pred eEEEEeeEEEEECC----E-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEE-EE
Confidence 46999999999975 2 4688999999999999999999999999999999985 88888543 11233 36
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
.++.... ..+++.+....... .+. .+.....++++.+.+.. +..+..+|+|++||++++.++..++++||+|
T Consensus 353 ~Q~~~~~--~~~tv~~~~~~~~~-~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 353 PQYIKAD--YEGTVYELLSKIDA-SKL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHH-HHH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCCcCC--CCCcHHHHHHhhhc-cCC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6654321 22344222211100 001 12234455666665542 4556799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhc--------cceEEeccccc
Q 024225 234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKET 263 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~ 263 (270)
||+..||...++.+.++++ ..|+|+||.+.
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999988777777654 23788888754
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=2.3e-21 Score=202.44 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=111.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++.. ...+|+|+||++++||++||+||||||||||+++|+|++ +|+.|. |.
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~----------------~~~~G~-i~ 448 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY----------------DPLDGM-VS 448 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS----------------CCSEEE-EE
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------------CCCCeE-EE
Confidence 489999999997532 233779999999999999999999999999999999999 455555 55
Q ss_pred cCCCCccccc-------------------cCcccChHHHHHhcCCCCCccHHHHHHHH---------HhhccCCC----c
Q 024225 157 MDGFHLYLSQ-------------------LDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGS----V 204 (270)
Q Consensus 157 ~dg~~~~~~~-------------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l---------~~l~~~~~----~ 204 (270)
+||.++.... .+..+|.. +|.+ ....+.+.+.+ +.+..+.+ .
T Consensus 449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~-----~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR-----YGRE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH-----HHCS-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh-----cCCC-CCCHHHHHHHHHHhCcHHHHHhccccccccccC
Confidence 5554332100 12222111 1111 11222222222 22222222 2
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
....+||||+||+++++++..+++++|+|||+..+|....+.+.+.++ ..|+|+|+.+
T Consensus 523 ~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 344899999999999999999999999999999999987777776664 3478888764
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.82 E-value=3.2e-21 Score=194.51 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=120.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++||++.|++.. ..+|+|+||++++|+++||+||||||||||+|+|+|++. |++|++..++. ...+. +
T Consensus 670 ~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~--~~I~y-v 741 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHEN--CRIAY-I 741 (986)
T ss_dssp EEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTT--CCEEE-E
T ss_pred ceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCc--cceEe-e
Confidence 4799999999997521 226799999999999999999999999999999999985 77777422110 00010 1
Q ss_pred ecCC-----------------------CCc--------------------------------------------------
Q 024225 156 PMDG-----------------------FHL-------------------------------------------------- 162 (270)
Q Consensus 156 ~~dg-----------------------~~~-------------------------------------------------- 162 (270)
.++. .+.
T Consensus 742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~ 821 (986)
T 2iw3_A 742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821 (986)
T ss_dssp CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence 1100 000
Q ss_pred -----------cccccCcccCh--------HHH-----------HHhcCCCCCccHHHHHHHHHhhccCC----CcCCCC
Q 024225 163 -----------YLSQLDAMEDP--------KEA-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPS 208 (270)
Q Consensus 163 -----------~~~~l~~~~~~--------~~~-----------~~~~g~~~~~~~~~~~~~l~~l~~~~----~~~~~~ 208 (270)
....++..++. ... ....|.........+.++++.+++.. +..+..
T Consensus 822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~ 901 (986)
T 2iw3_A 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901 (986)
T ss_dssp EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence 00000000000 000 00112222223455677888887753 345679
Q ss_pred CCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc----ceEEeccccc
Q 024225 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KCYATSFKET 263 (270)
Q Consensus 209 ~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~----~i~v~~~~~~ 263 (270)
|||||+||+.++.++..++++||+|||+..||......+.+.+.. .|+++||.+.
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~ 960 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF 960 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHH
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 999999999999999999999999999999999888888888774 3788887643
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=3.8e-21 Score=200.77 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=117.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++... ..+|+|+||+|++||++||+||||||||||+++|+|++. |++|++ +++...
T Consensus 1030 ~i~~~~v~~~y~~~~~-~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGGG-CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCCC-CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 4899999999975321 236799999999999999999999999999999999994 666663 333211
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CCccHHHHHHHHHhhcc---------CCCc----CCCCCCccc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~l~~---------~~~~----~~~~~S~g~ 213 (270)
+...+ ++++|.... . .+..+|. .++.+ .......+.+.++.... +.+. ....+||||
T Consensus 1106 r~~i~-~v~Q~~~l~-~--~ti~eNi-----~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A 1106 RAQLG-IVSQEPILF-D--CSIAENI-----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp TTSCE-EEESSCCCC-S--SBHHHHH-----TCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred HhceE-EECCCCccc-c--ccHHHHH-----hccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence 11122 355554321 1 1221111 12221 11223333333332221 1111 234799999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
+||+++++++..++++||+|||+..+|....+.+.+.++ ..|+|+|+.++
T Consensus 1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence 999999999999999999999999999988888777775 34788888765
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=6.7e-22 Score=192.18 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=109.6
Q ss_pred ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc----------CCCCCC---
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQVK--- 147 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~----------~~~~~~--- 147 (270)
+||++.|++. ..++.++| ++++||++||+||||||||||+|+|+|++. |++|++ +.+...
T Consensus 95 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~~~~~~~G~~~~~~ 167 (607)
T 3bk7_A 95 EDCVHRYGVN---AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDNVIRAFRGNELQNY 167 (607)
T ss_dssp GSEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHHHHHHTTTSTHHHH
T ss_pred CCeEEEECCC---CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccchhhheeCCEehhhh
Confidence 8888888652 13679999 999999999999999999999999999985 777763 111100
Q ss_pred -------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE 218 (270)
Q Consensus 148 -------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~ 218 (270)
.-..+. +.+. .... +... ........... .....+.++++.+++.. +..+..+|+||+||++
T Consensus 168 ~~~~~~~~~~i~~-~~q~-~~~~-~~~~-~~tv~e~l~~~-----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva 238 (607)
T 3bk7_A 168 FERLKNGEIRPVV-KPQY-VDLL-PKAV-KGKVRELLKKV-----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238 (607)
T ss_dssp HHHHHHTSCCCEE-ECSC-GGGG-GGTC-CSBHHHHHHHT-----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH
T ss_pred hhhhhhhhcceEE-eech-hhhc-hhhc-cccHHHHhhhh-----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH
Confidence 000111 1110 0000 0000 00011111110 01123456777777653 4566799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
++.++..+|++||+|||+..||+..+..+.+++. ..|+|+||.+.
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 9999999999999999999999987666666665 34788888653
No 52
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.82 E-value=1e-21 Score=176.96 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=122.0
Q ss_pred cccccceecCCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCc
Q 024225 96 PTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (270)
Q Consensus 96 ~l~~isl~i~~ge------ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~ 169 (270)
++.+++..+..+. ++||+||||||||||+++|++++.. +++ .+ ...++.+|+++.....+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~----------~~-~v~~i~~D~f~~~~~~l~~ 142 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPD----------HP-NVEVITTDGFLYSNAKLEK 142 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STT----------CC-CEEEEEGGGGBCCHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCC----------CC-eEEEEeecccccchhhhhh
Confidence 5566776665555 9999999999999999999999841 111 12 2345899998765432211
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh------h
Q 024225 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------G 242 (270)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe------~ 242 (270)
.....++|++..++...+.+.++.+..+. .+..|.||++..+++.........++++|+||++++.++ .
T Consensus 143 ----~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~ 218 (321)
T 3tqc_A 143 ----QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQ 218 (321)
T ss_dssp ----TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSS
T ss_pred ----HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccc
Confidence 11224578889999999999999999998 789999999999988655555678999999999999986 2
Q ss_pred hHHHHHHhhccceEEeccccchhhcc
Q 024225 243 VWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 243 ~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
.|..+.+++|++|||+++.++++.|+
T Consensus 219 ~~~~l~~~~D~~I~Vda~~d~~~~R~ 244 (321)
T 3tqc_A 219 LQVFVSDFFDFSLFVDAQAQVIQKWY 244 (321)
T ss_dssp CCCCGGGGCSEEEEEECCHHHHHHHH
T ss_pred hhhhhhhhcCeEEEEECCHHHHHHHH
Confidence 34458899999999999999998875
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.82 E-value=9.8e-22 Score=188.77 Aligned_cols=169 Identities=15% Similarity=0.058 Sum_probs=109.4
Q ss_pred EEe-ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc----------CCCCC
Q 024225 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV 146 (270)
Q Consensus 78 l~~-~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~----------~~~~~ 146 (270)
.++ +||+|.|++. ..++.++| ++++||++||+||||||||||+|+|+|++. |++|++ +++..
T Consensus 21 ~~~~~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN---AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCc---cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 344 5899999752 23679999 999999999999999999999999999985 777763 11110
Q ss_pred C----------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccC
Q 024225 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG 214 (270)
Q Consensus 147 ~----------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~ 214 (270)
. .-..+. +.+.-. .. +.... ........... ......++++.+++.. +.++..+|+||+
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~q~~~-~~-~~~~~-~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVV-KPQYVD-LI-PKAVK-GKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEE-ECSCGG-GS-GGGCC-SBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhh-hhhhhh-hc-chhhh-ccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 0 000111 111100 00 00000 00111111000 1123456777777653 456679999999
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
||++++.++..+|++||+|||+..||+..++.+.+++. ..|+|+|+.+
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999986666666654 3488888864
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=2.3e-21 Score=202.88 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=116.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCC--------
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-------- 147 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~-------- 147 (270)
.++++||++.|++.. ...+|+|+||+|++||.|||+||||||||||+++|.|++. |++|++ +|+.-.
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 489999999997632 2336799999999999999999999999999999999993 555542 222100
Q ss_pred CCCceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhc---------cCCCcC----CCCCCccc
Q 024225 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGV 213 (270)
Q Consensus 148 ~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~---------~~~~~~----~~~~S~g~ 213 (270)
+.. ..+|++|.+-... +..+| -.+|. +.+...+.+.+.++... .|.+.. ...+|+||
T Consensus 1152 R~~-i~~V~Qdp~LF~g---TIreN-----I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1152 RSQ-IAIVSQEPTLFDC---SIAEN-----IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HTT-EEEECSSCCCCSE---EHHHH-----HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred Hhh-eEEECCCCEeeCc---cHHHH-----HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 011 1224444432111 11111 12333 33344455555544333 222322 24799999
Q ss_pred CChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK 261 (270)
Q Consensus 214 ~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~ 261 (270)
+||+++++++..++++||+||++..+|...-+.+.+.++. .|.|+|..
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 9999999999999999999999999999877777777763 36777654
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=5.6e-21 Score=199.99 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=114.8
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.++++||++.|++... ..+|+|+||+|++|+.+||+||||||||||+++|.|++ .|..|. |.
T Consensus 415 ~I~~~nvsF~Y~~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~----------------~~~~G~-I~ 476 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPD-VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY----------------DVLKGK-IT 476 (1321)
T ss_dssp CEEEEEEEECCSSSTT-SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS----------------CCSEEE-EE
T ss_pred cEEEEEeeeeCCCCCC-CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc----------------ccccCc-cc
Confidence 4899999999976322 33679999999999999999999999999999999999 556666 66
Q ss_pred cCCCCccccc-------------------cCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccCCCc----
Q 024225 157 MDGFHLYLSQ-------------------LDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV---- 204 (270)
Q Consensus 157 ~dg~~~~~~~-------------------l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~~~~~~---- 204 (270)
+||.++.... -+..+| -.+|.+. .+.+.+.+.++ .+-.|.+.
T Consensus 477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN-----I~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN-----ISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH-----HHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCCccchhccHHHHhhcccccCCcceeeCCchhHH-----Hhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence 6665443211 111111 1233322 23344444333 33333332
Q ss_pred CCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
..-.+||||+||+++++++..+++++|+||++..+|....+.+.+.++ ..|.|+|...
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 234799999999999999999999999999999999876666666554 3477777653
No 56
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=3.8e-20 Score=160.35 Aligned_cols=156 Identities=21% Similarity=0.350 Sum_probs=101.1
Q ss_pred ccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEEeecCCCCccccccCcccCh
Q 024225 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (270)
Q Consensus 95 ~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~ 173 (270)
.+|+|+||++++|+++||+||||||||||+++|+|++. .+ ++ . .. ....++.+|+++ . .++..++.
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-~-~~-~~i~~v~~d~~~--~-~l~~~~~~ 79 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-Q-RQ-RKVVILSQDRFY--K-VLTAEQKA 79 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-G-GG-CSEEEEEGGGGB--C-CCCHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-c-cC-CceEEEeCCcCc--c-ccCHhHhh
Confidence 37899999999999999999999999999999999872 11 11 0 01 122347777532 1 13332222
Q ss_pred HHHHHhcCC--CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225 174 KEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (270)
Q Consensus 174 ~~~~~~~g~--~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~ 251 (270)
......+++ +..++...+.+.++.+.......++.||+|+++|+.. .++..+++++|+||+.++.++ .+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~ 154 (245)
T 2jeo_A 80 KALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMF 154 (245)
T ss_dssp HHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTC
T ss_pred hhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhc
Confidence 111111222 2234556667777777777778889999999999976 455667899999999888884 567778
Q ss_pred ccceEEeccccchhhcc
Q 024225 252 DEKCYATSFKETYFNRE 268 (270)
Q Consensus 252 ~~~i~v~~~~~~~~~r~ 268 (270)
+.+|||+++.+.++.|+
T Consensus 155 ~~~i~v~th~~~~~~r~ 171 (245)
T 2jeo_A 155 HLRLFVDTDSDVRLSRR 171 (245)
T ss_dssp SEEEEEECCHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHH
Confidence 89999999988887664
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-20 Score=183.59 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=107.7
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCC
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~ 161 (270)
++++.|+... ..+.+++ .+++||++||+||||||||||+|+|+|++. |++|++..... .....-.++|..
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~---~~~~~~~~~g~~ 151 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPE---WQEIIKYFRGSE 151 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSC---HHHHHHHTTTST
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccc---hhhhhheecChh
Confidence 4566665422 1345544 589999999999999999999999999985 77776421100 000000111111
Q ss_pred cccc---------------c-cC-----cccChHHHHHhcCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhh
Q 024225 162 LYLS---------------Q-LD-----AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE 218 (270)
Q Consensus 162 ~~~~---------------~-l~-----~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~ 218 (270)
+... + .. ............+...........++++.+++.. +..+..+|+||+||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 152 LQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 1000 0 00 0000000000011111123355677788877753 4567899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
++.++..++++||+|||+..||+.....+.++++ ..|+|+|+.+.
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999999999999999987776666665 24888888754
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=176.01 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=113.9
Q ss_pred ccchhhhhhhhcccccccccceecCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~g-----eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
+++.+.|++.. .++++++|++.+| |++||+||||||||||+++|+|+++ |++|+... ....+ ++
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~-~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVS-MK 418 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEE-EE
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEE-Ee
Confidence 56777786532 2568999999998 7899999999999999999999996 77776221 11122 24
Q ss_pred ecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 156 ~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
.++-...+ ..++.+ ....... ....+.....++++.+.+. .+..+..+||||+||++++.+++.++++||+|
T Consensus 419 ~q~~~~~~--~~tv~e---~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQ---LFFKKIR-GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHH---HHHHHCS-STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHH---HHHHHhh-cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 43321111 122222 1111111 1112334455677777665 35677799999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHhhc--------cceEEeccccch
Q 024225 234 GNYLFLDGGVWKDVSSMFD--------EKCYATSFKETY 264 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~--------~~i~v~~~~~~~ 264 (270)
||+..||...+..+.+++. ..|+|+||.+..
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999877766665554 237888887554
No 59
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.79 E-value=1.3e-20 Score=159.38 Aligned_cols=147 Identities=30% Similarity=0.467 Sum_probs=109.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
.++|+++||+||||||||||+++|+|++. ++ | +..|. +.+||+++......... .....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~~~~~~----~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRLLEPRG----LLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHHHGGGT----CGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHHHHHhc----ccccCCCC
Confidence 57899999999999999999999999993 10 0 24565 99999876432111100 01134566
Q ss_pred CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccc
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKET 263 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~ 263 (270)
..++...+.+++..+..++.+..|.|+++...+......+...++++|+|++++++||+.|..+.+.+|..|||+++.++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMAD 160 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHH
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHH
Confidence 67777777788888888877777777766655544433343345899999999999999999999999999999999998
Q ss_pred hhhcc
Q 024225 264 YFNRE 268 (270)
Q Consensus 264 ~~~r~ 268 (270)
++.|.
T Consensus 161 ~~~R~ 165 (208)
T 3c8u_A 161 LEARL 165 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 60
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.79 E-value=1.2e-20 Score=169.18 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=118.8
Q ss_pred eEEeccchhhhhhhhcccccccccceec-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i-------------------~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~ 137 (270)
++++++|++.|.. +++++++.+ ++|+++||+||||||||||+++|+|++..
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~---- 106 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR---- 106 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT----
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh----
Confidence 4788999999964 568889888 89999999999999999999999999820
Q ss_pred CcccCCCCCCCCCceE--EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC-cCCCCCCcccC
Q 024225 138 KASSFDSQVKPPDVAT--VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVG 214 (270)
Q Consensus 138 ~G~~~~~~~~~p~~g~--~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~-~~~~~~S~g~~ 214 (270)
.|+.|. ++.+||++.... ..+..... ...+.+..++.......+..+..+.. +..|.|+....
T Consensus 107 ----------~~~~G~i~vi~~d~~~~~~~---~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~ 172 (308)
T 1sq5_A 107 ----------WPEHRRVELITTDGFLHPNQ---VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY 172 (308)
T ss_dssp ----------STTCCCEEEEEGGGGBCCHH---HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTT
T ss_pred ----------CCCCCeEEEEecCCccCcHH---HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceeccccccccc
Confidence 155454 345588763210 00000001 12344445566666677777777666 77899998888
Q ss_pred ChhhhhhhhccCCcEEEEeCCCCCCChh------hHHHHHHhhccceEEeccccchhhcc
Q 024225 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 215 ~rv~~~~~l~~~~~ilIld~~~~~lDe~------~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
+++.........++++|+||++++.++. .+..+.+++|..|||+++.++++.|+
T Consensus 173 ~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~ 232 (308)
T 1sq5_A 173 DVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWY 232 (308)
T ss_dssp EECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHH
T ss_pred CcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHH
Confidence 8876544444568999999999998720 01246788999999999998877664
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.78 E-value=1.7e-19 Score=182.06 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=113.2
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccCCCCCCCCCceEEe
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~g-ll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
.+...|+++.|++.. +|+|+||++++|+++||+||||||||||+|+|+| .+ .|. . .+....++
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i------~g~----~--~~~~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV------DGF----P--TQEECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS------TTC----C--CTTTSCEE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc------CCC----c--cccceeEE
Confidence 466669999998633 6799999999999999999999999999999995 21 010 0 00111112
Q ss_pred ecCCC-CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCcEEE
Q 024225 156 PMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (270)
Q Consensus 156 ~~dg~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~ilI 231 (270)
++... ......+++.++... ...+ . ...+.++++.+++. .+.++..||+||+||++++.++..++++||
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred EEcccccccccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22211 011112333332211 1111 1 45567788888874 245667999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225 232 VDGNYLFLDGGVWKDVSSMFD----EKCYATSFKE 262 (270)
Q Consensus 232 ld~~~~~lDe~~~~~l~~~~~----~~i~v~~~~~ 262 (270)
+|||+..||....+.+.+++. ..|+++|+.+
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~ 606 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred EECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 999999999988888888876 3477777753
No 62
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.77 E-value=5.5e-20 Score=166.95 Aligned_cols=173 Identities=32% Similarity=0.495 Sum_probs=137.7
Q ss_pred cccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHhcccC--------------------------------------
Q 024225 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (270)
Q Consensus 96 ~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll~~~~-------------------------------------- 135 (270)
+++.+++.+++|++ ++|+|++||||||++++|++.+.--+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 45788888999988 99999999999999999999864211
Q ss_pred -CCCcccCC----------------CC-C-------------------------CC---C---CceEEeecCCCCccccc
Q 024225 136 -PQKASSFD----------------SQ-V-------------------------KP---P---DVATVLPMDGFHLYLSQ 166 (270)
Q Consensus 136 -~~~G~~~~----------------~~-~-------------------------~~---p---~~g~~i~~dg~~~~~~~ 166 (270)
...|+.+. +. . .. + ....++++|||++.+..
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111000 00 0 01 1 14567899999999888
Q ss_pred cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC-----------------------------CCcCCCCCCcccCChh
Q 024225 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (270)
Q Consensus 167 l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~~S~g~~~rv 217 (270)
++.+.++...+.++|.|+++|...+..+++.|..+ ..++.|.|++...+++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 87777777778899999999999998888887665 4678899999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-----cceEEeccccchhhcc
Q 024225 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKCYATSFKETYFNRE 268 (270)
Q Consensus 218 ~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-----~~i~v~~~~~~~~~r~ 268 (270)
.....+...++++|+|+.++++++..|..+.+++| +.|||+++.++++.|.
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rl 306 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERV 306 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHH
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHH
Confidence 88877777789999999999999888999999999 8999999999988875
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.77 E-value=3.5e-19 Score=175.17 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCc--EEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 194 ~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~--ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
+++.+++. .+.++..+|+||+||++++.++..+++ +||+|||+..||+...+.+.++++ ..|+|+||.
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45666654 245677999999999999999998877 999999999999988888777775 348888887
Q ss_pred cc
Q 024225 262 ET 263 (270)
Q Consensus 262 ~~ 263 (270)
+.
T Consensus 265 ~~ 266 (670)
T 3ux8_A 265 DT 266 (670)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=1.9e-19 Score=172.68 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=101.5
Q ss_pred cchhhhhhhhccccccccccee-cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC------------CCCCC-
Q 024225 82 CMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVK- 147 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~-i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~------------~~~~~- 147 (270)
+.++.|+... ++-..+. +++||++||+||||||||||+|+|+|++. |++|++. .+...
T Consensus 4 ~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 4 EVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEIY 75 (538)
T ss_dssp CEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred CCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeHH
Confidence 4567776532 2222333 56899999999999999999999999985 7777641 11100
Q ss_pred -------CCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC--CCcCCCCCCcccCChhh
Q 024225 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (270)
Q Consensus 148 -------~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~--~~~~~~~~S~g~~~rv~ 218 (270)
....+. ...-++......+... .......... ......++++.+.+. .+..+..+|+||+||++
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 76 NYFKELYSNELKI-VHKIQYVEYASKFLKG-TVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLL 148 (538)
T ss_dssp HHHHHHHTTCCCE-EEECSCTTGGGTTCCS-BHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred HHHHHHhhcccch-hhccchhhhhhhhccC-cHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 000010 1111110000000000 0000000000 011234566666654 34566799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc------cceEEeccccc
Q 024225 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKET 263 (270)
Q Consensus 219 ~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~~ 263 (270)
++.++..+|++||+|||+..||+.....+.++++ ..|+|+|+.+.
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~ 199 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV 199 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence 9999999999999999999999977776666665 34888888743
No 65
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.69 E-value=5.4e-18 Score=150.83 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=102.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH------HH
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE------AH 177 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~------~~ 177 (270)
-.++.+|||+|++|||||||++.|.+++... |. ....+.++.+|+++.... ..++..+ ..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g~-------~~~~~~iv~~D~f~~~~~---~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----YG-------GEKSIGYASIDDFYLTHE---DQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH----HG-------GGSCEEEEEGGGGBCCHH---HHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc----CC-------CCceEEEeccccccCChH---HHHHHhccccccchh
Confidence 4578999999999999999999999999410 00 012345349999876432 1111111 12
Q ss_pred HhcCCCCCccHHHHHHHHHhhccC------CCcCCCCC----CcccCChhhhh--hhhccCCcEEEEeCCCCCCChhh--
Q 024225 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSF----DHGVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGGV-- 243 (270)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~~~------~~~~~~~~----S~g~~~rv~~~--~~l~~~~~ilIld~~~~~lDe~~-- 243 (270)
...|.+.+++...+.+.++.+..+ ..+..|.| |+||++|++.+ ..+ ++++||+||+++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~~~ 171 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPILQG 171 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCCSC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccchh
Confidence 235678889999999999999887 44445544 77889998875 344 899999999999999743
Q ss_pred --------------------HHH-HHHhhccc---eEEeccccchhhc
Q 024225 244 --------------------WKD-VSSMFDEK---CYATSFKETYFNR 267 (270)
Q Consensus 244 --------------------~~~-l~~~~~~~---i~v~~~~~~~~~r 267 (270)
+.. +.+++|.+ |||+++.++.+.|
T Consensus 172 ~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~r 219 (290)
T 1odf_A 172 IENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYG 219 (290)
T ss_dssp TTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHH
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHH
Confidence 111 34445666 9999988776654
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=3.7e-17 Score=160.75 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=55.3
Q ss_pred HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccCC---cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225 192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT 258 (270)
Q Consensus 192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~~---~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~ 258 (270)
.+.++.+.+.. +.++..+|+||+||++++.++..++ ++||+|||+..||+...+.+.++++ ..|+|+
T Consensus 524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vt 603 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34455555532 3456799999999999999997765 6999999999999987777777765 247888
Q ss_pred ccccc
Q 024225 259 SFKET 263 (270)
Q Consensus 259 ~~~~~ 263 (270)
||.+.
T Consensus 604 Hd~~~ 608 (670)
T 3ux8_A 604 HNLDV 608 (670)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 88764
No 67
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-19 Score=171.33 Aligned_cols=167 Identities=13% Similarity=0.023 Sum_probs=104.7
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-c-c-CCCCCCCCCce
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDVA 152 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G-~-~-~~~~~~~p~~g 152 (270)
++++++||++.|+ +++|++++|++++|+||||||||||+|+|+|++. |++| + + +++.. ....+
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i~ 182 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPIF 182 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCSS
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCee
Confidence 4578889999885 5889999999999999999999999999999985 6677 5 4 23311 11111
Q ss_pred EEeecCCCC-ccccccCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhh--hccCCc
Q 024225 153 TVLPMDGFH-LYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHK 228 (270)
Q Consensus 153 ~~i~~dg~~-~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~--l~~~~~ 228 (270)
. +.++... .....++..++. +... ..+. ........+++.+++........+|+||+||++++.+ +..+++
T Consensus 183 ~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 183 T-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp S-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred e-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence 1 1111100 000011222221 1000 0010 0001111223333333322356899999999999999 999999
Q ss_pred E----EEEeC-CCCCCChhhHHHHHHhhc----cceEEecccc
Q 024225 229 V----VIVDG-NYLFLDGGVWKDVSSMFD----EKCYATSFKE 262 (270)
Q Consensus 229 i----lIld~-~~~~lDe~~~~~l~~~~~----~~i~v~~~~~ 262 (270)
+ ||+|| |+..+|+. .+.+.++++ ..++|+|+.+
T Consensus 258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp HHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred cCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 9 99999 99999987 666666654 3478888766
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.67 E-value=7.1e-18 Score=138.42 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=81.3
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHH------------HHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccc
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk------------~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~ 166 (270)
|+||++++||+++|+||||||||||++ .+.|++ .++.+. ....+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~----------------~~~~~~-~~~~~~------ 57 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM----------------SDDEND-QTVTGA------ 57 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH----------------CSSTTC-GGGHHH------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh----------------cCcccc-hhhHHH------
Confidence 689999999999999999999999999 455554 222111 000000
Q ss_pred cCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCC---cCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChh-
Q 024225 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG- 242 (270)
Q Consensus 167 l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~---~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~- 242 (270)
... .........+..+.. -.....|+|++||++++.++..+++++++|||+..+|+.
T Consensus 58 ---------~~~----------~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 58 ---------AFD----------VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp ---------HHH----------HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred ---------HHH----------HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 000 000011111222221 122345899999999999999999999999999999987
Q ss_pred ---------------hHHHHHHhhc-------cceEEeccccch
Q 024225 243 ---------------VWKDVSSMFD-------EKCYATSFKETY 264 (270)
Q Consensus 243 ---------------~~~~l~~~~~-------~~i~v~~~~~~~ 264 (270)
.++.+.+++. ..|+++|+.+..
T Consensus 119 ~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 119 KNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEV 162 (171)
T ss_dssp HTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHH
T ss_pred hcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHh
Confidence 5566666654 238888887543
No 69
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=8.6e-17 Score=135.45 Aligned_cols=138 Identities=24% Similarity=0.344 Sum_probs=92.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
.++|+++||+||||||||||+++|+|++ .|. ..++.+|.+......++..+ .....++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~----------------~~~-i~~v~~d~~~~~~~~~~~~~---~~~~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL----------------GER-VALLPMDHYYKDLGHLPLEE---RLRVNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH----------------GGG-EEEEEGGGCBCCCTTSCHHH---HHHSCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh----------------CCC-eEEEecCccccCcccccHHH---hcCCCCCCh
Confidence 5789999999999999999999999998 332 34588887654322222211 111112334
Q ss_pred CCccHHHHHHHHHhhccCCCcCCC--CCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccc
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFK 261 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~--~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~ 261 (270)
...+...+.+.++.+..+.....| .+|.|++..... ....++++++||+++++|| ....+++..||+|++.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~---~~~~~~~li~~~~ll~~de----~~~~~~d~~i~ld~~~ 135 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRT---PVRPAPVVILEGILVLYPK----ELRDLMDLKVFVDADA 135 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCE---EECCCSEEEEESTTTTSSH----HHHTTCSEEEEEECCH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeE---EeCCCcEEEEeehhhccCH----HHHHhcCEEEEEeCCH
Confidence 445666777788887776544333 567776532111 1124789999999999997 4566789999999999
Q ss_pred cchhhcc
Q 024225 262 ETYFNRE 268 (270)
Q Consensus 262 ~~~~~r~ 268 (270)
+.++.|+
T Consensus 136 ~~~~~r~ 142 (211)
T 3asz_A 136 DERFIRR 142 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=7.7e-17 Score=136.73 Aligned_cols=140 Identities=17% Similarity=0.096 Sum_probs=79.4
Q ss_pred hhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCC------CCCCceEEeecC
Q 024225 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV------KPPDVATVLPMD 158 (270)
Q Consensus 85 ~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~------~~p~~g~~i~~d 158 (270)
|.|+... +|+++ ++|++++|+||||||||||+++|+|+ . |++|++..... .....|. ++++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~ 74 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT 74 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence 4565543 66884 89999999999999999999999999 6 88887521000 0000111 1111
Q ss_pred CCCccccccCcccChHH-HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC
Q 024225 159 GFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (270)
Q Consensus 159 g~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~ 237 (270)
.. ..+. ..... .....+. .+...+.++++. ..||+||++++.++..++++||+|||+.
T Consensus 75 ~~----enl~--~~~~~~~~~~~~~---~~~~~~~~~l~~------------glGq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 75 LN----EKID--PYLRPLHDALRDM---VEPEVIPKLMEA------------GIVEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---------C--TTTHHHHHHHTTT---SCTTHHHHHHHT------------TSEEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HH----HHHH--HHHHHHHHHHHHh---ccHHHHHHHHHh------------CCchHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 10 0000 00000 0000110 111223333332 1299999999999999999999999999
Q ss_pred CCChhhHHHHHHhhcc-----ceEEecccc
Q 024225 238 FLDGGVWKDVSSMFDE-----KCYATSFKE 262 (270)
Q Consensus 238 ~lDe~~~~~l~~~~~~-----~i~v~~~~~ 262 (270)
. ..+.+.+++.. .+.++||.+
T Consensus 134 ~----~~~~l~~~l~~l~~g~tiivtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRLGFGSKMVVTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTBCTTCEEEEEEC--
T ss_pred c----cHHHHHHHHHHhcCCCEEEEECCHH
Confidence 9 34444444432 233777764
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.61 E-value=5.3e-17 Score=145.16 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=87.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++. |.++.
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~-------------------G~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG-------------------GSVLS 156 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT-------------------CEEEC
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC-------------------ceEEE
Confidence 478899999997 32 6799999999999999999999999999999999972 33222
Q ss_pred cCCC--CccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh-hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEe
Q 024225 157 MDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (270)
Q Consensus 157 ~dg~--~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld 233 (270)
.... .++. -+..+ .++.+..... ....+.++. +..+.+ ...+|+||+|| ++++..+|++||
T Consensus 157 ~v~q~~~lf~--~ti~~------~ni~~~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 157 FANHKSHFWL--ASLAD------TRAALVDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp GGGTTSGGGG--GGGTT------CSCEEEEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred EecCcccccc--ccHHH------HhhccCcccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence 1111 1111 11111 0111111111 133344444 322222 56899999999 778888999999
Q ss_pred CCCCCCChhhHHHHHH
Q 024225 234 GNYLFLDGGVWKDVSS 249 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~ 249 (270)
+..+|....+.+..
T Consensus 221 --Ts~LD~~~~~~i~~ 234 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLY 234 (305)
T ss_dssp --EESSCSTTCGGGGG
T ss_pred --ECCCCHHHHHHHHH
Confidence 99999866666543
No 72
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.60 E-value=9.1e-16 Score=153.34 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=58.2
Q ss_pred HHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEE
Q 024225 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYA 257 (270)
Q Consensus 191 ~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v 257 (270)
..++++.++++. ...+..+|+|++||+.++.++..+ ++++|+|||+.+||....+.+.++++ ..|+|
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvi 789 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV 789 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456677777654 345679999999999999999885 69999999999999987777777665 23778
Q ss_pred eccccc
Q 024225 258 TSFKET 263 (270)
Q Consensus 258 ~~~~~~ 263 (270)
+|+.+.
T Consensus 790 sHdl~~ 795 (842)
T 2vf7_A 790 EHKMQV 795 (842)
T ss_dssp CCCHHH
T ss_pred cCCHHH
Confidence 888754
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.58 E-value=4.1e-15 Score=149.45 Aligned_cols=72 Identities=11% Similarity=-0.009 Sum_probs=57.0
Q ss_pred HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225 192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT 258 (270)
Q Consensus 192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~ 258 (270)
.++++.+++.. ...+..+|+|++||+.++.++..+ ++++|+|||+.+||...++.+.++++ ..|+++
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45667776654 345679999999999999999865 49999999999999987777776665 337888
Q ss_pred ccccc
Q 024225 259 SFKET 263 (270)
Q Consensus 259 ~~~~~ 263 (270)
|+.+.
T Consensus 906 Hdl~~ 910 (972)
T 2r6f_A 906 HNLDV 910 (972)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 88764
No 74
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.57 E-value=1.4e-14 Score=145.94 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=56.6
Q ss_pred HHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEe
Q 024225 192 LNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYAT 258 (270)
Q Consensus 192 ~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~ 258 (270)
.++++.++++. ...+..||+|++||+.++.++..+ ++++|+|||+.+||....+.+.++++ ..|+|+
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45666666643 345669999999999999999865 49999999999999987777777665 337888
Q ss_pred ccccc
Q 024225 259 SFKET 263 (270)
Q Consensus 259 ~~~~~ 263 (270)
|+.+.
T Consensus 924 Hdl~~ 928 (993)
T 2ygr_A 924 HNLDV 928 (993)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 88764
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.55 E-value=7.9e-17 Score=149.63 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=93.2
Q ss_pred cccccceecCCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCCCceEE
Q 024225 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (270)
Q Consensus 96 ~l~~isl~i~~ge--------------------ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p~~g~~ 154 (270)
++++++|++++|+ ++||+||||||||||+|+|+|++. |++|++ .++.... ..+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~- 112 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH- 112 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence 6799999999999 999999999999999999999986 889985 3332111 1233
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCC-CcCCCCCCcc--cCChhhhhhhhcc------
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------ 225 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~-~~~~~~~S~g--~~~rv~~~~~l~~------ 225 (270)
++.+.. .++++..+++... .. . ....+.++.+.+.. +..+ .+|+| ++||+.++.++..
T Consensus 113 v~q~~~---~~~ltv~D~~g~~-----~~-~---~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 113 PYKHPN---IPNVVFWDLPGIG-----ST-N---FPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp EEECSS---CTTEEEEECCCGG-----GS-S---CCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred eccccc---cCCeeehHhhccc-----ch-H---HHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeE
Confidence 444432 1124444443221 01 1 12445566555543 2222 38998 9999999998888
Q ss_pred ----CCcEEEEeCCCCCCChhhHHHHHHh
Q 024225 226 ----QHKVVIVDGNYLFLDGGVWKDVSSM 250 (270)
Q Consensus 226 ----~~~ilIld~~~~~lDe~~~~~l~~~ 250 (270)
+++++++|||+..+|+..++++.+.
T Consensus 180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 180 FVRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp EEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred EEEecCcccccCcccccCCHHHHHHHHHH
Confidence 8899999999999998655554443
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.54 E-value=1.8e-15 Score=140.16 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=46.8
Q ss_pred CCcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 209 ~S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
+|+||+||+.++.++..++ ++||+|||+..||+...+.+.+++.. .|+|+|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 6999999999999998899 99999999999999888888777763 367777753
No 77
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=2.3e-14 Score=144.31 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=58.7
Q ss_pred HHHHHHHhhccCC---CcCCCCCCcccCChhhhhhhhccC---CcEEEEeCCCCCCChhhHHHHHHhhc-------cceE
Q 024225 190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCY 256 (270)
Q Consensus 190 ~~~~~l~~l~~~~---~~~~~~~S~g~~~rv~~~~~l~~~---~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~ 256 (270)
...++++.++++. ...+..+||||+||+.++.++..+ ++++|+|||+.+||....+.+.++++ ..|+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3456677777753 346679999999999999999765 47999999999999987777777765 3488
Q ss_pred Eeccccc
Q 024225 257 ATSFKET 263 (270)
Q Consensus 257 v~~~~~~ 263 (270)
|+|+.++
T Consensus 864 I~HdL~~ 870 (916)
T 3pih_A 864 IEHNLDV 870 (916)
T ss_dssp ECCCHHH
T ss_pred EeCCHHH
Confidence 8888764
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.45 E-value=2.8e-15 Score=123.97 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=46.5
Q ss_pred CCCCCCcccCChhhhhhh-----hccCCcEEEEeC--CCCCCChhhHHHHHHhhcc----ceEEec
Q 024225 205 YAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KCYATS 259 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~-----l~~~~~ilIld~--~~~~lDe~~~~~l~~~~~~----~i~v~~ 259 (270)
++..+|+||+||++++.+ +..+++++|+|| |+..+|+...+.+.++++. .++++|
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 445789999999999996 889999999999 9999999999988888863 345554
No 79
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.44 E-value=1.4e-14 Score=129.39 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=83.4
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHH
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~ 177 (270)
.+++|++++|++++|+||||||||||++.|+|++ .|+.|. +.++|.+.++. ...+......
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l----------------~~~~g~-V~l~g~d~~r~--~a~~ql~~~~ 151 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL----------------KNEGTK-VLMAAGDTFRA--AASDQLEIWA 151 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCC-EEEECCCCSCH--HHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH----------------HHcCCe-EEEEeecccch--hHHHHHHHHH
Confidence 5789999999999999999999999999999999 455566 56666554331 0001111111
Q ss_pred --HhcCC-CCCcc-HHHHHHHHHhhcc----CCCc--------------CCCCCCcccCChhhhhhhhccCCc--EEEEe
Q 024225 178 --ARRGA-PWTFN-PLLLLNCLKNLRN----QGSV--------------YAPSFDHGVGDPVEDDILVGLQHK--VVIVD 233 (270)
Q Consensus 178 --~~~g~-~~~~~-~~~~~~~l~~l~~----~~~~--------------~~~~~S~g~~~rv~~~~~l~~~~~--ilIld 233 (270)
...++ ++... ......+.+++.. +.+. ++.++| +||+.++.++...|+ ++++|
T Consensus 152 ~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 22333 32222 1222233333321 1110 111233 578888888888999 99999
Q ss_pred CCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 234 GNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
|+..+|...+ +..+.+ ..+++++..
T Consensus 229 -ptsglD~~~~--~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 229 -GNTGLNMLPQ--AREFNEVVGITGLILTKLD 257 (302)
T ss_dssp -GGGGGGGHHH--HHHHHHHTCCCEEEEECCS
T ss_pred -CCCCcCHHHH--HHHHHHhcCCCEEEEeCCC
Confidence 9999997433 333332 237777754
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.44 E-value=3.1e-14 Score=128.69 Aligned_cols=123 Identities=10% Similarity=0.085 Sum_probs=86.0
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg 159 (270)
++++++ | .. +++++++.+++|++++|+||||||||||+++|+|++ +|+.|. +.++|
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~----------------~~~~g~-i~i~~ 206 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI----------------PKEERI-ISIED 206 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS----------------CTTSCE-EEEES
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC----------------cCCCcE-EEECC
Confidence 456666 6 11 569999999999999999999999999999999998 667777 77776
Q ss_pred CCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCC
Q 024225 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (270)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~l 239 (270)
..... +.... ...++. . .+|+++|++++.++..+|++||+||+..
T Consensus 207 ~~e~~--~~~~~------~~i~~~----------------~---------ggg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 207 TEEIV--FKHHK------NYTQLF----------------F---------GGNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp SCCCC--CSSCS------SEEEEE----------------C---------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred eeccc--cccch------hEEEEE----------------e---------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 53111 11000 001110 0 1799999999999999999999999997
Q ss_pred ChhhHHHHHHhhcc---ceEEecccc
Q 024225 240 DGGVWKDVSSMFDE---KCYATSFKE 262 (270)
Q Consensus 240 De~~~~~l~~~~~~---~i~v~~~~~ 262 (270)
...++.+..+... .+.++|..+
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSS
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccH
Confidence 3355555555432 245555543
No 81
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=4.9e-14 Score=114.36 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=48.8
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~ 141 (270)
++..++++.|+... +++++||++++|++++|+||||||||||+|+|+|++ |++|++
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V 63 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNV 63 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCC
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeE
Confidence 45668899998643 779999999999999999999999999999999997 666663
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.37 E-value=1.1e-14 Score=123.98 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=25.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+|+||++++|++++|+||||||||||+++|+|++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 679999999999999999999999999999999987
No 83
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.36 E-value=2.2e-13 Score=114.23 Aligned_cols=142 Identities=17% Similarity=0.267 Sum_probs=78.4
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceE--EeecCCCCccccccCcccChHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT--VLPMDGFHLYLSQLDAMEDPKEAHARR 180 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~--~i~~dg~~~~~~~l~~~~~~~~~~~~~ 180 (270)
..++|++++|+|+||||||||++.|++.+. +..+. ++..|.+.............. ....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~----------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~~~~- 79 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR----------------EQGISVCVFHMDDHIVERAKRYHTGNEE-WFEY- 79 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH----------------HTTCCEEEEEGGGGCCCHHHHSSSSSCH-HHHH-
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh----------------hcCCeEEEeccCcccCCHHHHHhcCCCC-ccCC-
Confidence 467899999999999999999999999983 22232 234455433211000000000 0000
Q ss_pred CCCCCccHHHHHHH-HHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225 181 GAPWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259 (270)
Q Consensus 181 g~~~~~~~~~~~~~-l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~ 259 (270)
++..++...+.+. +..+..+.....+.|++....+.. ........+++|+|+++++.+ .+.+.++..|||++
T Consensus 80 -~~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~ 152 (201)
T 1rz3_A 80 -YYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDC 152 (201)
T ss_dssp -HHTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECC
T ss_pred -CccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeC
Confidence 1233455555433 355555555666666665332221 111223567999999998754 45677899999999
Q ss_pred cccchhhccC
Q 024225 260 FKETYFNREA 269 (270)
Q Consensus 260 ~~~~~~~r~~ 269 (270)
+.++++.|..
T Consensus 153 ~~~~~~~R~~ 162 (201)
T 1rz3_A 153 PREIRFAREN 162 (201)
T ss_dssp C---------
T ss_pred CHHHHHHHHh
Confidence 9999988863
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.35 E-value=1.6e-13 Score=125.28 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=83.6
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH-
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA- 176 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~- 176 (270)
..++|++++|++++|+||||||||||++.|+|++ .|+.|. +.+++.+.++. ...+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l----------------~~~~G~-V~l~g~D~~r~--~a~eql~~~~ 208 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL----------------KNEGTK-VLMAAGDTFRA--AASDQLEIWA 208 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCC-EEEECCCCSCH--HHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc----------------cccCCE-EEEeccccccc--chhHHHHHHH
Confidence 4688999999999999999999999999999999 455566 66666554331 000111111
Q ss_pred -HHhcCC-CCCcc-HHHHHHHHHhhcc----CCCc--------------CCCCCCcccCChhhhhhhhccCCc--EEEEe
Q 024225 177 -HARRGA-PWTFN-PLLLLNCLKNLRN----QGSV--------------YAPSFDHGVGDPVEDDILVGLQHK--VVIVD 233 (270)
Q Consensus 177 -~~~~g~-~~~~~-~~~~~~~l~~l~~----~~~~--------------~~~~~S~g~~~rv~~~~~l~~~~~--ilIld 233 (270)
+...++ ++... ......+.+++.. +.+. .+.++| ++|+.++.++...|+ +|++|
T Consensus 209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 122333 33222 2222333333321 1110 111234 578888888888999 99999
Q ss_pred CCCCCCChhhHHHHHHhhc----cceEEeccc
Q 024225 234 GNYLFLDGGVWKDVSSMFD----EKCYATSFK 261 (270)
Q Consensus 234 ~~~~~lDe~~~~~l~~~~~----~~i~v~~~~ 261 (270)
|+..+|...+ +..+.+ ..|++|+..
T Consensus 286 -pttglD~~~~--~~~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 286 -GNTGLNMLPQ--AREFNEVVGITGLILTKLD 314 (359)
T ss_dssp -GGGGGGGHHH--HHHHHHHTCCCEEEEESCT
T ss_pred -CCCCCCHHHH--HHHHHHhcCCeEEEEecCc
Confidence 9999997433 233322 236777744
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.34 E-value=5.7e-13 Score=117.13 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=69.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-CCCCCCCC----CceEEeecCCCCccccccCcccChHHHHHhcCCC
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~-~~~~~~~p----~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~ 183 (270)
.+||+||||||||||+++|+|++. |++|++ +++..... ....++.++... ...+++.+++.+.....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~--~~~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGV--KMKLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCC--cCCceEEechhhhhhccc--
Confidence 689999999999999999999995 888874 33321111 111223333221 122455555433211111
Q ss_pred CCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
......+...++. ...+.....+|+|++||+++++++ +.++++||+...+|+...+.+..+-+
T Consensus 77 -~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal---~~lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 77 -ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVH---CCLYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp -TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCC---EEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheee---eeeEEEecCCCcCCHHHHHHHHHHHh
Confidence 1112223222221 111233457899999999999887 55999999999999855544444433
No 86
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.34 E-value=1.1e-12 Score=117.80 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=45.8
Q ss_pred CCCCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225 206 APSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK 261 (270)
Q Consensus 206 ~~~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~ 261 (270)
+..+|+|++|+++++.+++ .+++++|+|||+..||+...+.+.+++.. .|+++|+.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~ 282 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 4588999999999999876 47899999999999999877777776652 36777764
No 87
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.33 E-value=6.9e-14 Score=136.07 Aligned_cols=164 Identities=9% Similarity=0.025 Sum_probs=77.7
Q ss_pred eEEeccchhhhhhhhccccccc------c--cceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCC
Q 024225 77 VVEARCMDEVYDALAQRLLPTS------A--LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~------~--isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~ 148 (270)
.++++||++.|+...+.++-+. + .+++++. +||+||||||||||+++|+|++ .
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~----------------~ 70 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA----------------L 70 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-----------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC----------------C
Confidence 4778899999976432221111 1 2355554 9999999999999999999997 4
Q ss_pred C-CceEEeecCCCCccccccCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccC
Q 024225 149 P-DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (270)
Q Consensus 149 p-~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~ 226 (270)
| +.|. +..+|..+....... ....+...++ ++........++.+++..........-.+...+++.........
T Consensus 71 P~~sG~-vt~~g~~i~~~~~~~---~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~ 146 (608)
T 3szr_A 71 PRGSGI-VTRCPLVLKLKKLVN---EDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDV 146 (608)
T ss_dssp -------CCCSCEEEEEEECSS---SSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSS
T ss_pred CCCCCe-EEEcCEEEEEecCCc---cccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCC
Confidence 4 4565 666665432110010 0011123344 22222222334444443221100000011123344444444456
Q ss_pred CcEEEEeCC------CCCCChhhHHHHHHhhcc---------ceEEeccccc
Q 024225 227 HKVVIVDGN------YLFLDGGVWKDVSSMFDE---------KCYATSFKET 263 (270)
Q Consensus 227 ~~ilIld~~------~~~lDe~~~~~l~~~~~~---------~i~v~~~~~~ 263 (270)
++++++|+| +..+|+...+.+.+++.. .++++|+.|.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 899999999 999999877777777663 2566666653
No 88
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.31 E-value=1.8e-12 Score=118.62 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCCCCcccCChhhhhhhhc------cCCcEEEEeCCCCCCChhhHHHHHHhhcc-------ceEEeccccc
Q 024225 205 YAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE-------KCYATSFKET 263 (270)
Q Consensus 205 ~~~~~S~g~~~rv~~~~~l~------~~~~ilIld~~~~~lDe~~~~~l~~~~~~-------~i~v~~~~~~ 263 (270)
.+..+|+||+||++++.++. .+++++|+|||+..||+...+.+.++++. .|+|+|+.+.
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF 347 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 45689999999999998887 69999999999999999888877777653 3788888754
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.26 E-value=3.8e-12 Score=111.35 Aligned_cols=113 Identities=13% Similarity=0.041 Sum_probs=71.3
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC-ceEEee
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD-VATVLP 156 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~-~g~~i~ 156 (270)
+++++|.+. . +|++++ +++|++++|+||||||||||+++|+|++ .|. .|. |.
T Consensus 6 ~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~----------------~~~~~G~-I~ 58 (261)
T 2eyu_A 6 PEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI----------------NQTKSYH-II 58 (261)
T ss_dssp CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH----------------HHHCCCE-EE
T ss_pred CChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC----------------CCCCCCE-EE
Confidence 456666643 1 668888 8999999999999999999999999998 444 566 44
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~ 236 (270)
.++..+.. + .+. ..++..+ -..+.+ ... -+++++.++..++++|++|||.
T Consensus 59 ~~g~~i~~--~--~~~------~~~~v~q------------~~~gl~--~~~------l~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 59 TIEDPIEY--V--FKH------KKSIVNQ------------REVGED--TKS------FADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp EEESSCCS--C--CCC------SSSEEEE------------EEBTTT--BSC------HHHHHHHHHHHCCSEEEESCCC
T ss_pred EcCCccee--e--cCC------cceeeeH------------HHhCCC--HHH------HHHHHHHHHhhCCCEEEeCCCC
Confidence 44433211 0 000 0000000 001111 011 1688888888899999999999
Q ss_pred CCCChhhHHHHHHh
Q 024225 237 LFLDGGVWKDVSSM 250 (270)
Q Consensus 237 ~~lDe~~~~~l~~~ 250 (270)
|+.....+.+.
T Consensus 109 ---D~~~~~~~l~~ 119 (261)
T 2eyu_A 109 ---DLETVETALRA 119 (261)
T ss_dssp ---SHHHHHHHHHH
T ss_pred ---CHHHHHHHHHH
Confidence 87655544433
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=3.2e-12 Score=122.26 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEee
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~ 156 (270)
.+++++++..|+.... +| +..+.+|++++|+||||||||||++.++|.+. +.-..++.
T Consensus 257 ~~~~~~l~~g~~~ld~---vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~----------------~~G~~vi~ 314 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDE---MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC----------------ANKERAIL 314 (525)
T ss_dssp CCCCCEECCSCHHHHH---HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH----------------TTTCCEEE
T ss_pred ccccceeecChHHHHH---Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----------------hCCCCEEE
Confidence 3567778777765321 22 34899999999999999999999999999983 21111233
Q ss_pred cCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHh-hccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCC
Q 024225 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (270)
Q Consensus 157 ~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~ 235 (270)
+...... ........++|+ +... +.+. +..-.+.++..+|+|+++++..+.++..++++||+| |
T Consensus 315 ~~~ee~~-------~~l~~~~~~~g~----~~~~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p 379 (525)
T 1tf7_A 315 FAYEESR-------AQLLRNAYSWGM----DFEE---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-S 379 (525)
T ss_dssp EESSSCH-------HHHHHHHHTTSC----CHHH---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-C
T ss_pred EEEeCCH-------HHHHHHHHHcCC----CHHH---HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-C
Confidence 3222110 000111122332 2221 1110 111134455689999999999999999999999999 9
Q ss_pred CCCCChh-----hHHHHHHhhc-------cceEEeccc
Q 024225 236 YLFLDGG-----VWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 236 ~~~lDe~-----~~~~l~~~~~-------~~i~v~~~~ 261 (270)
+..+|.. .++.+.++++ ..++++++.
T Consensus 380 ~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 380 LSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred hHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 9999987 7777766665 226667765
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=6.1e-14 Score=117.09 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=65.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCC-CC
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WT 185 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~-~~ 185 (270)
|++++|+||||||||||+++|+|++ . +.| +.++|+.... +.. ..++.|+. +.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----------------~-~~G--i~~~g~~~~~--~~~------~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----------------K-SSG--VPVDGFYTEE--VRQ------GGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----------------H-HTT--CCCEEEECCE--EET------TSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----------------c-cCC--EEEcCEecch--hHh------hhceEEEEEEe
Confidence 7899999999999999999999998 2 233 3344433211 110 01112221 00
Q ss_pred ccHHHHHHHHHhhccCC---------CcCCCCCCcccCChhhhh-h---hhccCCcEEEEeC--CCCCCChhhHHHHHHh
Q 024225 186 FNPLLLLNCLKNLRNQG---------SVYAPSFDHGVGDPVEDD-I---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSM 250 (270)
Q Consensus 186 ~~~~~~~~~l~~l~~~~---------~~~~~~~S~g~~~rv~~~-~---~l~~~~~ilIld~--~~~~lDe~~~~~l~~~ 250 (270)
... ....+..+..+. ..+...+|++++.++... . ++..+++++|+|| ++-..|+.+++.+.++
T Consensus 54 ~~g--~~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 54 LSG--TRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp TTS--CEEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ccc--ceehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 000 000011111110 001112455555554322 2 3567899999999 7877899999999999
Q ss_pred hc
Q 024225 251 FD 252 (270)
Q Consensus 251 ~~ 252 (270)
++
T Consensus 132 l~ 133 (189)
T 2i3b_A 132 LS 133 (189)
T ss_dssp HH
T ss_pred Hh
Confidence 97
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.23 E-value=3e-13 Score=115.88 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=35.0
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHH--HHh
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV--RRI 131 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~--gll 131 (270)
+++++.++..++.... ++.+ .+++|++++|+||||||||||+++|+ +++
T Consensus 6 ~~~~~~i~tg~~~lD~---~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDE---LIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp --CCCEECCSCTTTGG---GTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccccceeecCCHhHHH---HhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3555666666654321 1222 58999999999999999999999999 664
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.22 E-value=3.1e-12 Score=108.11 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=71.2
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecC
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~d 158 (270)
+++.++..++.... ++.+ -+++|++++|+||||||||||+++|+|.+. +..+. -...+..++++
T Consensus 3 ~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~-------g~~~~~~i~~~ 66 (231)
T 4a74_A 3 TIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEE-------GGLNGSVIWID 66 (231)
T ss_dssp CCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGG-------TCCSCEEEEEE
T ss_pred cCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---ccccc-------CCCCCEEEEEE
Confidence 34455555654321 2222 488999999999999999999999999763 11110 00123346666
Q ss_pred CCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCC-hhhhhhhh-------ccCCcEE
Q 024225 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD-PVEDDILV-------GLQHKVV 230 (270)
Q Consensus 159 g~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~-rv~~~~~l-------~~~~~il 230 (270)
+..... .+......+..++. .. ++.+++..... ++..... .+.....+ ..+++++
T Consensus 67 ~~~~~~-----~~~i~~~~~~~~~~----~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 67 TENTFR-----PERIREIAQNRGLD----PD---EVLKHIYVARA-----FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp SSSCCC-----HHHHHHHHHHTTSC----HH---HHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CCCCCC-----HHHHHHHHHHcCCC----HH---HHhhcEEEEec-----CChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 653211 11122333444432 11 56666654321 2222111 11211111 3478999
Q ss_pred EEeCCCCCCCh
Q 024225 231 IVDGNYLFLDG 241 (270)
Q Consensus 231 Ild~~~~~lDe 241 (270)
++|++...+|+
T Consensus 130 ilDe~~~~l~~ 140 (231)
T 4a74_A 130 IVDSLTSHFRS 140 (231)
T ss_dssp EEETSSHHHHH
T ss_pred EECChHHHhcc
Confidence 99999999886
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.19 E-value=1.1e-11 Score=109.62 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=35.3
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|+++++.+++|++++|+||||||||||++.|++.+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999983
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.19 E-value=2.3e-12 Score=123.21 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=87.4
Q ss_pred eEEeccchhhhhhhhcccccccccce-ecCCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCcccCCCCCCCCCceE
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVAT 153 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl-~i~~geivgL~GpnGsGKSTLlk~--L~gll~~~~~~~G~~~~~~~~~p~~g~ 153 (270)
+++.+++.+.+++ +.+|+++++ .+++|++++|+||||||||||+++ ++|++ +|..|.
T Consensus 12 ~~~~~~~~~~~~g----~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~----------------~~~~g~ 71 (525)
T 1tf7_A 12 NSEHQAIAKMRTM----IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII----------------EFDEPG 71 (525)
T ss_dssp --CCSSCCEECCC----CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----------------HHCCCE
T ss_pred CccccccccccCC----chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH----------------hCCCCE
Confidence 4566667655544 348899999 999999999999999999999999 78998 455676
Q ss_pred EeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccC---CCc-CCCCCC-cccCC-hhhhhhhh-ccC
Q 024225 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV-YAPSFD-HGVGD-PVEDDILV-GLQ 226 (270)
Q Consensus 154 ~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~---~~~-~~~~~S-~g~~~-rv~~~~~l-~~~ 226 (270)
+++++.... .......+.+|+..+ . ... ..++... ... ....+. .+..+ .......+ ..+
T Consensus 72 -i~v~g~~~~-------~~~~~~~~~~g~~~q--~--~~~-~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~ 138 (525)
T 1tf7_A 72 -VFVTFEETP-------QDIIKNARSFGWDLA--K--LVD-EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYR 138 (525)
T ss_dssp -EEEESSSCH-------HHHHHHHGGGTCCHH--H--HHH-TTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEEeCCH-------HHHHHHHHHcCCChH--H--hhc-cCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcC
Confidence 777776411 111122334554211 1 110 0111110 000 000000 00000 00111223 247
Q ss_pred CcEEEEeCCCCCC-----ChhhHHHHHHhhc-------cceEEeccccc
Q 024225 227 HKVVIVDGNYLFL-----DGGVWKDVSSMFD-------EKCYATSFKET 263 (270)
Q Consensus 227 ~~ilIld~~~~~l-----De~~~~~l~~~~~-------~~i~v~~~~~~ 263 (270)
++++++|+++..+ |+..++.+.++++ ..|+++|+.+.
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 8899999998754 6666666666665 33788888765
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.18 E-value=4.1e-12 Score=129.74 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=83.9
Q ss_pred ceEEecc-----chhhhhhhhcccccccccceecCC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCC
Q 024225 76 PVVEARC-----MDEVYDALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (270)
Q Consensus 76 ~~l~~~~-----l~~~y~~~~~~v~~l~~isl~i~~-------geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~ 143 (270)
+++++++ |.+.|.+. ..++.|++|++++ |++++|+||||||||||+|.| |++. .
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~---~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~--------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD---DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-V--------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC---CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-H---------
T ss_pred ceEEEEeccccEEEEEecCC---ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-H---------
Confidence 3588999 99998421 1267999999987 999999999999999999999 8872 0
Q ss_pred CCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh
Q 024225 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (270)
Q Consensus 144 ~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l 223 (270)
....|.+++.+.. .++..++. ..+.|... .+.. ....|+.++. +++.+.++
T Consensus 815 ----~aqiG~~Vpq~~~-----~l~v~d~I---~~rig~~d------------~~~~----~~stf~~em~-~~a~al~l 865 (1022)
T 2o8b_B 815 ----MAQMGCYVPAEVC-----RLTPIDRV---FTRLGASD------------RIMS----GESTFFVELS-ETASILMH 865 (1022)
T ss_dssp ----HHTTTCCEESSEE-----EECCCSBE---EEECC-------------------------CHHHHHHH-HHHHHHHH
T ss_pred ----HhheeEEeccCcC-----CCCHHHHH---HHHcCCHH------------HHhh----chhhhHHHHH-HHHHHHHh
Confidence 0112322333221 12222111 11222210 0000 1123445544 37777788
Q ss_pred ccCCcEEEEeCCCCCCChh-----hHHHHHHhhc----cceEEeccccc
Q 024225 224 GLQHKVVIVDGNYLFLDGG-----VWKDVSSMFD----EKCYATSFKET 263 (270)
Q Consensus 224 ~~~~~ilIld~~~~~lDe~-----~~~~l~~~~~----~~i~v~~~~~~ 263 (270)
+.++.++|+|||..++|.. .|.-+..+.+ ..+|+||+.+.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el 914 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL 914 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 8899999999999999963 3444444443 34788887654
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.17 E-value=3.8e-12 Score=128.43 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=76.7
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+++|++|++++|++++|+||||||||||+|+|+++.- .+..|. .++..... +..-+.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~-----~vpa~~~~-i~~~d~--------------- 718 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGS-----YVPAEEAT-IGIVDG--------------- 718 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTC-----CBSSSEEE-EECCSE---------------
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCc-----cccchhhh-hhHHHH---------------
Confidence 6699999999999999999999999999999987641 011110 00111111 111000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHH-----Hh
Q 024225 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SM 250 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~-----~~ 250 (270)
...++|.. +++ ......|+.|++++..+... +.+++++|+|||+.++|+.....+. .+
T Consensus 719 i~~~ig~~------------d~l----~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 719 IFTRMGAA------------DNI----YKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp EEEEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhCChH------------HHH----HHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 00111110 111 11234678888888776665 5789999999999999985433332 22
Q ss_pred hc----cceEEeccccc
Q 024225 251 FD----EKCYATSFKET 263 (270)
Q Consensus 251 ~~----~~i~v~~~~~~ 263 (270)
.+ ..++++|+.+.
T Consensus 782 ~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 782 IRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp HHTTCCEEEEECSCGGG
T ss_pred HHhcCCeEEEEeCcHHH
Confidence 22 34788888754
No 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.14 E-value=9.1e-12 Score=113.24 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=54.0
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
++++++++++.|+.. +.+++++ |+|.+|+++||+||||||||||+++|+|++ .|+.|. +
T Consensus 44 ~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~----------------~~~~g~-i 102 (347)
T 2obl_A 44 DPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA----------------SADIIV-L 102 (347)
T ss_dssp CSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS----------------CCSEEE-E
T ss_pred CCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC----------------CCCEEE-E
Confidence 457889999999731 3378999 999999999999999999999999999998 677776 5
Q ss_pred ecCCC
Q 024225 156 PMDGF 160 (270)
Q Consensus 156 ~~dg~ 160 (270)
...|.
T Consensus 103 ~~~G~ 107 (347)
T 2obl_A 103 ALIGE 107 (347)
T ss_dssp EEESC
T ss_pred EEecc
Confidence 55554
No 99
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.13 E-value=4.1e-11 Score=121.22 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=71.9
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+++|++|++++|++++|+||||||||||+|+|++..- .++.|. .-|..+..+..-+.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~------~vpa~~~~~~~~d~--------------- 707 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGC------FVPCESAEVSIVDC--------------- 707 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTC------CBSEEEEEEECCSE---------------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCC------ccccccccchHHHH---------------
Confidence 5689999999999999999999999999999954431 011111 01111111111110
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCCCCCCChhhHHHH-----H
Q 024225 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-----S 248 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~~~~lDe~~~~~l-----~ 248 (270)
...++|.. .+ ....+|.++.++...+.++ +.+++++|+|||+.++|+.....+ .
T Consensus 708 i~~~ig~~------------------d~-l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~ 768 (934)
T 3thx_A 708 ILARVGAG------------------DS-QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE 768 (934)
T ss_dssp EEEECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred HHHhcCch------------------hh-HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 11122211 00 0123455555555555545 678999999999999998533332 2
Q ss_pred Hhhc----cceEEeccccc
Q 024225 249 SMFD----EKCYATSFKET 263 (270)
Q Consensus 249 ~~~~----~~i~v~~~~~~ 263 (270)
.+.+ ..+|+||+.+.
T Consensus 769 ~l~~~~g~~vl~aTH~~el 787 (934)
T 3thx_A 769 YIATKIGAFCMFATHFHEL 787 (934)
T ss_dssp HHHHTTCCEEEEEESCGGG
T ss_pred HHHhcCCCEEEEEcCcHHH
Confidence 2222 34788888654
No 100
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.11 E-value=1.5e-10 Score=100.12 Aligned_cols=144 Identities=24% Similarity=0.411 Sum_probs=91.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcC---
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--- 181 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g--- 181 (270)
....+|+|.|++||||||+++.|+..+.- + .++ .......++..|+++.. +. .....+...|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d---~~~~~~~~i~~D~~~~~---~~---~~~~~~~~~g~~~ 84 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD---YRQKQVVILSQDSFYRV---LT---SEQKAKALKGQFN 84 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC---GGGCSEEEEEGGGGBCC---CC---HHHHHHHHTTCSC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc---ccCCceEEEecCccccc---cC---hhhhhhhccCCCC
Confidence 34578999999999999999999997630 0 000 00112335788887531 11 1111122222
Q ss_pred --CCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEec
Q 024225 182 --APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATS 259 (270)
Q Consensus 182 --~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~ 259 (270)
.+..++...+.+.++.+..+..+..|.|+.....++..... ....+++|+|+++++.++ .+.+.++..||+++
T Consensus 85 f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~ 159 (252)
T 1uj2_A 85 FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDT 159 (252)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH----HHHHHCSEEEEEEC
T ss_pred CCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH----HHHHhcCeeEEEeC
Confidence 24556667777888888777666666666555444421111 124679999998887664 56677899999999
Q ss_pred cccchhhcc
Q 024225 260 FKETYFNRE 268 (270)
Q Consensus 260 ~~~~~~~r~ 268 (270)
+.++++.|.
T Consensus 160 ~~e~~~~R~ 168 (252)
T 1uj2_A 160 DADTRLSRR 168 (252)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999988774
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.10 E-value=3.9e-11 Score=107.17 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~ 164 (270)
+|++++|+||||||||||+++|+|++ .|+.|. +.++|.+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll----------------~~~~g~-V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY----------------QNLGKK-VMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH----------------HTTTCC-EEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH----------------HhcCCE-EEEEeecCCC
Confidence 69999999999999999999999999 455666 6666665543
No 102
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.09 E-value=1.7e-11 Score=114.69 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=91.0
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEe
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i 155 (270)
+.++++++++.|+.. +.+|+++ |++.+|++++|+||||||||||+++|+|+. .|+.|. +
T Consensus 130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~----------------~~~~G~-i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT----------------RADVIV-V 188 (438)
T ss_dssp CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS----------------CCSEEE-E
T ss_pred CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc----------------CCCeEE-E
Confidence 457889999999731 2378999 999999999999999999999999999998 677886 7
Q ss_pred ecCCC---CccccccCcc-cChHHHHHhcCC-CCC-ccHHHHHHHHHhhc-------c-CCCc-----CCCCCCcccCCh
Q 024225 156 PMDGF---HLYLSQLDAM-EDPKEAHARRGA-PWT-FNPLLLLNCLKNLR-------N-QGSV-----YAPSFDHGVGDP 216 (270)
Q Consensus 156 ~~dg~---~~~~~~l~~~-~~~~~~~~~~g~-~~~-~~~~~~~~~l~~l~-------~-~~~~-----~~~~~S~g~~~r 216 (270)
.++|. .+.. +... .......+..++ ++. .......++.+++. . +.++ .+..||+|+ ||
T Consensus 189 ~~~G~r~~ev~~--~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 189 GLIGERGREVKD--FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp EEESCCHHHHHH--HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred EEeceecHHHHH--HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence 77775 2211 0000 001112222344 221 22222222322221 1 1111 133678888 88
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 217 v~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
++++ ..++++ +..+|+.....+.+++.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~ 292 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVE 292 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHT
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHH
Confidence 8866 234444 89999988888887775
No 103
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=1.2e-11 Score=112.09 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=49.8
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.|++++++++++.|++.. ++++++|++.+|++++|+||||||||||+++|+|++.
T Consensus 26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 456788999999998644 6799999999999999999999999999999999984
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.09 E-value=1.1e-11 Score=123.07 Aligned_cols=123 Identities=23% Similarity=0.211 Sum_probs=73.7
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~ 175 (270)
+++|++|+ |++++|+||||||||||+|+|+|+.. .++.|.+.. ..... +.+-...
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vp-----a~~~~-i~~v~~i-------------- 622 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVP-----AEEAH-LPLFDGI-------------- 622 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBS-----SSEEE-ECCCSEE--------------
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceee-----hhccc-eeeHHHh--------------
Confidence 67899998 99999999999999999999999862 123333110 01111 1110000
Q ss_pred HHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhh--ccCCcEEEEeCC---CCCCChhhH-HHHHH
Q 024225 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS 249 (270)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l--~~~~~ilIld~~---~~~lDe~~~-~~l~~ 249 (270)
..+.+. .+++.. .+|.++.+++..+.++ +.+++++|+||| +..+|.... ..+.+
T Consensus 623 -~~~~~~------------~d~l~~-------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 623 -YTRIGA------------SDDLAG-------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp -EEECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred -hccCCH------------HHHHHh-------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence 001111 011111 2355667777777666 779999999999 888887543 33444
Q ss_pred hhc----cceEEeccccc
Q 024225 250 MFD----EKCYATSFKET 263 (270)
Q Consensus 250 ~~~----~~i~v~~~~~~ 263 (270)
.+. ..+++||+.+.
T Consensus 683 ~L~~~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 683 ALHERRAYTLFATHYFEL 700 (765)
T ss_dssp HHHHHTCEEEEECCCHHH
T ss_pred HHHhCCCEEEEEeCCHHH
Confidence 443 34778887643
No 105
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.09 E-value=1.5e-10 Score=96.79 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=76.2
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHH
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~ 178 (270)
++--++++|++++|+|++||||||+++.|++.+. . ..++.+|++......+...... ..
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------~-~~~i~~D~~~~~~~~~~~~~~~---~~ 71 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------N-CSVISQDDFFKPESEIETDKNG---FL 71 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------T-EEEEEGGGGBCCGGGSCBCTTS---CB
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------C-cEEEeCCccccCHhHhhccccC---CC
Confidence 3344588899999999999999999999999761 1 3457888765432211110000 00
Q ss_pred hcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhccceEEe
Q 024225 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYAT 258 (270)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~ 258 (270)
...+....+...+.+.+..+.... . .+..+.++.+ ..+.+++|+|++++..+++ +.+..+..||++
T Consensus 72 ~~~~~~~~~~~~l~~~i~~~l~~~-~-~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~ 137 (207)
T 2qt1_A 72 QYDVLEALNMEKMMSAISCWMESA-R-HSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLT 137 (207)
T ss_dssp CCSSGGGBCHHHHHHHHHHHHHHH-T-TSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEE
T ss_pred hhHHHHHhHHHHHHHHHHHHHhCC-C-CCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEE
Confidence 001111233333333332221110 1 1233444332 2357899999988776643 346678889999
Q ss_pred ccccchhhcc
Q 024225 259 SFKETYFNRE 268 (270)
Q Consensus 259 ~~~~~~~~r~ 268 (270)
++.++++.|.
T Consensus 138 ~~~~~~~~R~ 147 (207)
T 2qt1_A 138 IPYEECKRRR 147 (207)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998877663
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.07 E-value=1.5e-11 Score=103.71 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=32.8
Q ss_pred cccccce-ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+++.. .+++|++++|+||||||||||++.|++.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5677776 79999999999999999999999999887
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.07 E-value=1.1e-11 Score=103.23 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=34.7
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++++||++.|+. . ++++ |.+.+|+.++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999963 2 5576 899999999999999999999999999875
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.06 E-value=1e-10 Score=99.65 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.6
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
...++|++++|+||||||||||+++|+|++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999999999998
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.06 E-value=1.3e-11 Score=110.02 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=59.2
Q ss_pred ccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccCCCCCCCC-----CceEE
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPP-----DVATV 154 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl-l~~~~~~~G~~~~~~~~~p-----~~g~~ 154 (270)
+||++.|+... ++++++|+| +|+||||||||||+++|.|. + .+++|....+....+ ..+.+
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~---~~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL---YPERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc---cCCCCcccCCcccCCcceEeeEEEE
Confidence 57899998744 779999987 99999999999999999987 4 366662111111111 11221
Q ss_pred eecCCCCccccccCcccChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhccCCcEEEEeC
Q 024225 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (270)
Q Consensus 155 i~~dg~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~ 234 (270)
+..++.. ..++.++.+...... ... +.+..+.+.+....+.++..+|+|++|++..+.++ -++++|+
T Consensus 69 ~q~~~~~---~~ltv~Dt~g~~~~~-~~~-----e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~lde 135 (301)
T 2qnr_A 69 IEERGVK---LRLTVVDTPGYGDAI-NCR-----DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVH----CCFYFIS 135 (301)
T ss_dssp EC---CC---EEEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEEC
T ss_pred ecCCCcc---cCcchhhhhhhhhhc-CcH-----HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeec
Confidence 2222221 113443333221100 000 00111111111111244567899999998865544 2899999
Q ss_pred CCCC-CChhhHHHHHHh
Q 024225 235 NYLF-LDGGVWKDVSSM 250 (270)
Q Consensus 235 ~~~~-lDe~~~~~l~~~ 250 (270)
|+.. +|+...+.+..+
T Consensus 136 Pt~~~Ld~~~~~~l~~l 152 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMKAI 152 (301)
T ss_dssp SSSSSCCHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHH
Confidence 9874 998554444443
No 110
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.05 E-value=6.9e-11 Score=111.56 Aligned_cols=41 Identities=29% Similarity=0.278 Sum_probs=38.0
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
+|+++||++++ +++||+||||||||||+++|+|++. |++|+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~ 59 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTL 59 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCE
Confidence 67999999999 9999999999999999999999994 66666
No 111
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=1.2e-11 Score=111.59 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=48.7
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhcCC
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~g~ 182 (270)
..++|++++|+|||||||||++++|+|++ .|..|. +.+++.+.++ ....+......++.|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l----------------~~~~g~-V~l~g~D~~r--~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL----------------KNHGFS-VVIAASDTFR--AGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHH----------------HHTTCC-EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH----------------HhcCCE-EEEEeecccc--cchHHHHHHHHHHcCc
Confidence 44789999999999999999999999999 455566 5566655443 1122222233455664
Q ss_pred ---CCCccHHHHHHHHHhhc
Q 024225 183 ---PWTFNPLLLLNCLKNLR 199 (270)
Q Consensus 183 ---~~~~~~~~~~~~l~~l~ 199 (270)
++.........+.+++.
T Consensus 186 ~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 186 KVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp EEECCCTTCCHHHHHHHHHH
T ss_pred eEEeccccCCHHHHHHHHHH
Confidence 23223333444555544
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.03 E-value=6.5e-10 Score=97.46 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=71.6
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHH---HHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HAR 179 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~---~~~ 179 (270)
.+++|++++|+||||||||||++.|++.+. .|..+.+... ...+.+++++... ..... ...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~-~~~~~v~~~~~e~----------~~~~~~~r~~~ 89 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGE-LPTGPVIYLPAED----------PPTAIHHRLHA 89 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCC-CCCCCEEEEESSS----------CHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCcc-CCCccEEEEECCC----------CHHHHHHHHHH
Confidence 478999999999999999999999999773 3432222111 1112223333221 11111 122
Q ss_pred cCCCCCccHHHHHHHHHhhccCC--CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCC--CCChh
Q 024225 180 RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGG 242 (270)
Q Consensus 180 ~g~~~~~~~~~~~~~l~~l~~~~--~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~--~lDe~ 242 (270)
.+. ..+......+++++.+.. +..+..+|+|+.+++. ++..++++||+|++.. .+|+.
T Consensus 90 ~g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~---~l~~~~~livlDe~~~~~~~d~~ 151 (279)
T 1nlf_A 90 LGA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK---RAAEGRRLMVLDTLRRFHIEEEN 151 (279)
T ss_dssp HHT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH---HHHTTCSEEEEECGGGGCCSCTT
T ss_pred HHh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHHH---HhcCCCCEEEECCHHHhcCCCcC
Confidence 232 123334455667766543 3456678888866553 4445799999999998 67863
No 113
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.02 E-value=7.3e-11 Score=104.68 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=84.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCcc-ccccCc-ccChHHH-HHhcCC
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDA-MEDPKEA-HARRGA 182 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~-~~~l~~-~~~~~~~-~~~~g~ 182 (270)
++.+|||.|++||||||+++.|...+.. ......++.+|+++.. ...++. ....+.. ...+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~ 69 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSH 69 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCST
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCC
Confidence 4578999999999999999999987621 1222456899998642 111100 0000000 012222
Q ss_pred --CCCccHHHHHHHHHhhccCCCcCCCCCCcc-----cCChhhhh----hhhccCCcEEEEeCCCCCCChhhHHHHHHhh
Q 024225 183 --PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-----VGDPVEDD----ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (270)
Q Consensus 183 --~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g-----~~~rv~~~----~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~ 251 (270)
+..++...+.+.+..+..+.....|.|++. ...+.... ..+....+++|+|+++++... .+..+.+.+
T Consensus 70 fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~~~ 148 (290)
T 1a7j_A 70 FSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAGLA 148 (290)
T ss_dssp TSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGGGC
T ss_pred CChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHHhC
Confidence 445555666666776666655555666331 11111110 112235789999999998420 012456788
Q ss_pred ccceEEeccccchhhcc
Q 024225 252 DEKCYATSFKETYFNRE 268 (270)
Q Consensus 252 ~~~i~v~~~~~~~~~r~ 268 (270)
|.+|||+++.++++.|+
T Consensus 149 D~~IfV~a~~~~rl~Rr 165 (290)
T 1a7j_A 149 DLKIGVVPVINLEWIQK 165 (290)
T ss_dssp SEEEEEEECHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHH
Confidence 99999999999998876
No 114
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.00 E-value=5.3e-10 Score=101.06 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=44.9
Q ss_pred CCCCCCcccCC------hhhhhhhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 205 YAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 205 ~~~~~S~g~~~------rv~~~~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
.+..+|+|++| +++++.++..+++++|+|||+..||+..+..+.+++. ..|+++|+.
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 45689999999 4566667777999999999999999987777766664 236777774
No 115
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.99 E-value=4.6e-11 Score=109.09 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=43.4
Q ss_pred Eeccchhh---hhhhhcccc-------cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 79 ~~~~l~~~---y~~~~~~v~-------~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+++++++. |+.....++ ++++++|.+++|++++|+||||||||||+++|+|++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56677777 754222222 3499999999999999999999999999999999983
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=4.8e-10 Score=104.24 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=36.5
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++.++||++.|++.. ++++++|+| +|+|+||||||||+++|+|..
T Consensus 10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence 4589999999998643 779999987 999999999999999999986
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.97 E-value=1.4e-10 Score=115.80 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=33.3
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|++|+ ++|++++|+||||||||||+|+|+|+.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 67999999 999999999999999999999999985
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.93 E-value=9.3e-10 Score=100.28 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=28.0
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.+|++++|+||||||||||+++|+|++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 678889999999999999999999999994
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.93 E-value=4.3e-10 Score=102.25 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=72.2
Q ss_pred cccc-ceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCc----eEEeecCCCCccccccCccc
Q 024225 97 TSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----ATVLPMDGFHLYLSQLDAME 171 (270)
Q Consensus 97 l~~i-sl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~----g~~i~~dg~~~~~~~l~~~~ 171 (270)
|+.+ .+.+++|++++|+||||||||||++.|++... .+|+. |.++++++..... .+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~--------------~~~~~Gg~~G~vi~i~~e~~~~-----~~ 180 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ--------------LPPEEGGLNGSVIWIDTENTFR-----PE 180 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT--------------SCGGGTSCSCEEEEEESSSCCC-----HH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc--------------cchhcCCCCCeEEEEeCCCCCC-----HH
Confidence 4444 57899999999999999999999999999972 02333 4567888765321 01
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHhhccCCCcCCCCCCcccCChhhhhhhhc-------cCCcEEEEeCCCCCCChh
Q 024225 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (270)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g~~~rv~~~~~l~-------~~~~ilIld~~~~~lDe~ 242 (270)
...+.....++ +.. ++++++...... .+.++.+++..+..+. .++++||+|++..++|..
T Consensus 181 ~i~~i~q~~~~----~~~---~v~~ni~~~~~~----~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 181 RIREIAQNRGL----DPD---EVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHHHHHHTTTC----CHH---HHGGGEEEEECC----SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHHHHHHHcCC----CHH---HHhhCEEEEecC----ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 11122223332 211 555565543211 1234445555444443 579999999999999864
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.92 E-value=4.5e-11 Score=109.09 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=33.3
Q ss_pred ccccceecCC--CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 97 l~~isl~i~~--geivgL~GpnGsGKSTLlk~L~gll 131 (270)
...|++++.+ |+.++|+||||||||||+++|+|++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999 9999999999999999999999998
No 121
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.91 E-value=2e-10 Score=99.78 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=35.5
Q ss_pred ceEEeccc-hhhh-hhhhcccccccccceecCC---CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 76 ~~l~~~~l-~~~y-~~~~~~v~~l~~isl~i~~---geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++++++|| ++.| +... +|+++||++.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999 9999 4422 77999999999 9999999999999999999999988
No 122
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.90 E-value=6.1e-10 Score=93.40 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=25.7
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.| .++++|++++|+||||||||||+|+|+|++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3466 589999999999999999999999999998
No 123
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.88 E-value=1.9e-10 Score=94.26 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=56.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCC---ceEEeecCCCCccccccCcccChHHHH-HhcC--
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRG-- 181 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~---~g~~i~~dg~~~~~~~l~~~~~~~~~~-~~~g-- 181 (270)
++++|+|+||||||||+++|+|++ .|. .|. |.+|+..+.. ++. ...+..+ ...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~----------------~~~g~~~G~-I~~dg~~i~~--~~~-~~~d~~r~~~ig~~ 62 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL----------------RERGLRVAV-VKRHAHGDFE--IDK-EGKDSWKIYNSGAD 62 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH----------------HHTTCCEEE-EEC---------------CHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----------------hhcCCceEE-EEEcCccccc--CCc-cchhHHHHHhcCCc
Confidence 689999999999999999999999 444 566 8888875432 110 0111222 2344
Q ss_pred --C-CCCc-------cHH---HHHHHHHh-hccCCCc-CCCCCCcccCChhhhhhhhccCCc
Q 024225 182 --A-PWTF-------NPL---LLLNCLKN-LRNQGSV-YAPSFDHGVGDPVEDDILVGLQHK 228 (270)
Q Consensus 182 --~-~~~~-------~~~---~~~~~l~~-l~~~~~~-~~~~~S~g~~~rv~~~~~l~~~~~ 228 (270)
+ .+.. +.+ .+.++++. +. +.+. -...||+|++||+++++++..+++
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~ 123 (171)
T 2f1r_A 63 VVIASPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEH 123 (171)
T ss_dssp EEEECSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred eEEECCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence 2 2111 011 23344544 43 3332 122499999999999987766544
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.84 E-value=1.3e-09 Score=102.85 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=33.1
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++||++++|++++|+|+||||||||+++|+|++
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999
No 125
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.83 E-value=8.4e-10 Score=93.96 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHH-HHh
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~-gll 131 (270)
..++||++++|+++||+||||||||||+++|+ |++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999 987
No 126
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.83 E-value=1.8e-09 Score=89.61 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.3
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5678899999999999999999999999996
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.81 E-value=1.3e-08 Score=84.78 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.4
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++.++|++++|+||||||||||+++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3556789999999999999999999999997
No 128
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.81 E-value=3.8e-09 Score=93.78 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=39.1
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+..+++++.|+.. .++++|+ +|++++|+|+||+||||++..|++.+.
T Consensus 77 ~~~~~l~~~~~~~------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 77 TVYEALKEALGGE------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp HHHHHHHHHTTSS------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566788888642 1678887 899999999999999999999999983
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=7.3e-10 Score=103.00 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=39.9
Q ss_pred ceEEeccchhhhhhhhcccccccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHh
Q 024225 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll 131 (270)
..+++++ ++.|++. . ++++||++++|++ +||+||||||||||+++|+|+.
T Consensus 15 ~~l~~~~-~~~y~~~----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECCe----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3466777 8889752 2 6999999999999 9999999999999999999984
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=9.9e-09 Score=81.96 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=28.5
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+++++ +|+.++|.||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 899999999999999999999999983
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.76 E-value=5.7e-09 Score=95.61 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.4
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|++++ +++|++++|+||||||||||+++|+|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345554 7899999999999999999999999998
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.73 E-value=3.8e-09 Score=98.19 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=46.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
.++++++.+.|+... +|+++ + ..+|++++|+||||||||||+++|+|++. ++.|.
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~ 197 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERN 197 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSC
T ss_pred CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 467888988887644 66887 5 38899999999999999999999999995 66676
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.73 E-value=9.5e-09 Score=83.88 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=28.9
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|.+.+|+.++|.||||+|||||+++|++.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667889999999999999999999999998
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.69 E-value=1.2e-08 Score=90.95 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++++.++|++++|+|||||||||+++.|++.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3566778999999999999999999999999984
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.67 E-value=4.7e-10 Score=96.53 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVV---RRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~---gll 131 (270)
++++++|+||||||||||+++|+ |+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47999999999999999999999 654
No 136
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.66 E-value=5.4e-08 Score=81.28 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred cccccce-ecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 96 ~l~~isl-~i~~geivgL~GpnGsGKSTLlk~L~g 129 (270)
.|+.+.. .+++|++++|+||||||||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455554 589999999999999999999999999
No 137
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.64 E-value=8.7e-09 Score=85.74 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=34.9
Q ss_pred cchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 82 ~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++..++. +.+.+..++..++|++++|+|||||||||++++|++.+
T Consensus 4 ~~~~~~~~----~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 4 NIKWHECS----VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp ------CC----CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcccccc----cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555543 23557788888999999999999999999999999998
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.62 E-value=1.6e-09 Score=98.56 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=32.0
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~ 141 (270)
++++++.+ +|++++|+||||||||||+++|+|.+.. ++.|++
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I 247 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDV 247 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC--
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCc
Confidence 34555544 7999999999999999999999998721 566664
No 139
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.62 E-value=2.3e-08 Score=81.96 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=26.3
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+++|++++|+||||||||||+++|++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 37889999999999999999999999964
No 140
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.62 E-value=3.6e-08 Score=80.33 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=31.3
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+++++++.+| +.+|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6778888888 999999999999999999999984
No 141
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=2.4e-08 Score=83.03 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=25.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|+||++.+|++++|+|++||||||+++.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 679999999999999999999999999999999988
No 142
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.60 E-value=1.3e-09 Score=93.23 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=38.9
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++. |++|.
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTT
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCe
Confidence 4788888776642 344444 8999999999999999999999994 66665
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.58 E-value=8.5e-09 Score=98.19 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=37.9
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
+++++++.+++|++++|+||||||||||+++|+|++. |++|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi 290 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV 290 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence 5688999999999999999999999999999999994 55665
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.56 E-value=2.7e-08 Score=82.93 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++|++++|+||||||||||+++|+|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999998
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.55 E-value=3.9e-08 Score=81.45 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.3
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++.+|++++|+|||||||||++++|++++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999999999987
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.54 E-value=4.2e-10 Score=104.56 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=70.0
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCC-CCccccccCcccChHHH
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKEA 176 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg-~~~~~~~l~~~~~~~~~ 176 (270)
++++|+++.|++|+|+|+||||||||+++|++.. +..+. .......|..|. +.+++ ..+.-.+....... .
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~-~~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~--a 219 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAP-YPFTTLSPNLGV-VEVSEEERFTLADIPGIIEG--A 219 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECC-CTTCSSCCEEEE-EECSSSCEEEEEECCCCCCC--G
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccC-cccceecceeeE-EEecCcceEEEEeccccccc--h
Confidence 5899999999999999999999999999999874 21100 000012455565 66655 21111111111000 0
Q ss_pred HHhcCCCCCccHHHHHHHHHhhcc-----CC-CcCCCCCCcccCChhhhhhhhccCCcEEEEeCCCCCCCh
Q 024225 177 HARRGAPWTFNPLLLLNCLKNLRN-----QG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~l~~l~~-----~~-~~~~~~~S~g~~~rv~~~~~l~~~~~ilIld~~~~~lDe 241 (270)
....++. ..+...++.... +. ......+|.++++++..+.++...+.+|++ .-+|.
T Consensus 220 ~~~~~L~-----~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 220 SEGKGLG-----LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp GGSCCSC-----HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred hhhhhhh-----HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 0111111 111121111110 01 122235788899998888777788999998 45554
No 147
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.51 E-value=4e-08 Score=80.84 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++++|+||||||||||+++|+|++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999998
No 148
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.49 E-value=1e-07 Score=80.75 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.3
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
-+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999999999995
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.49 E-value=3.1e-08 Score=88.03 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~ 140 (270)
|++..|++++|+||||||||||+++|+|++. |+.|+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~ 199 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSE 199 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC---
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccc
Confidence 5677899999999999999999999999984 55555
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.5e-08 Score=90.47 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~ 141 (270)
+++.+|++++|+||||||||||+++|+|++. ++.|++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I 204 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEI 204 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccce
Confidence 7788999999999999999999999999985 666764
No 151
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.45 E-value=5.9e-08 Score=83.48 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.5
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+++++.+.|+... +++++++++++| ++|.||||+|||||+++|++.+
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 45678888886533 679999999999 9999999999999999999987
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.44 E-value=1.1e-07 Score=77.76 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|++++|+||||||||||+++|++.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 153
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.43 E-value=7.2e-08 Score=84.22 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.6
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+++++.+.|+... +++++++++++| ++|+||||||||||+++|++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 35678888886543 679999999999 9999999999999999999997
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.42 E-value=9.8e-08 Score=92.59 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=43.4
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++-+++...|+... +++++++.+..|+.++|+||||+|||||+++|++++.
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 33456777777644 6699999999999999999999999999999999983
No 155
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.40 E-value=1.6e-07 Score=82.31 Aligned_cols=34 Identities=41% Similarity=0.502 Sum_probs=32.4
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++++++++++| ++|.||||||||||+++|++.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 679999999999 9999999999999999999998
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.38 E-value=3e-08 Score=89.25 Aligned_cols=50 Identities=30% Similarity=0.464 Sum_probs=42.7
Q ss_pred EEeccchhhhhhhhcccccccccceecCCC-------eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~g-------eivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.+++++.|+... +++++++.+..| +.++|.||||+|||||+++|++.+
T Consensus 19 lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 19 LRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56678888887644 568888888766 899999999999999999999998
No 157
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.37 E-value=1.3e-07 Score=84.09 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccC
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~ 142 (270)
+++..|++++|+||||||||||+++|+ ++. ++.|++.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~ 196 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVS 196 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---Ccccccc
Confidence 456789999999999999999999999 775 8889853
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.34 E-value=3.5e-07 Score=84.46 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=60.0
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCCCcccCCCCCCCCCceEEeecCCCCccccccCcccChHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~--gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~~~l~~~~~~~~~~~~~ 180 (270)
-+++|++++|+||||||||||++.|+ +++. ++.| ...+.++++++..... . .......+++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G---------g~~~~viyid~E~~~~----~-~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG---------GGEGKCLYIDTEGTFR----P-VRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT---------CCSSEEEEEESSSCCC----H-HHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC---------CCCCcEEEEeCCCccC----H-HHHHHHHHHc
Confidence 48899999999999999999999665 3331 1111 0123457777764221 0 1112234455
Q ss_pred CCCCCccHHHHHHHHHhhccCCCcCCCCCCcc-cCChhhhh--hhhccCCcEEEEeCCCCCCCh
Q 024225 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-VGDPVEDD--ILVGLQHKVVIVDGNYLFLDG 241 (270)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~~~~~~~~~~~S~g-~~~rv~~~--~~l~~~~~ilIld~~~~~lDe 241 (270)
|+. . .++++++..... ++.. +.+.+..+ ......+++||+|++...+|.
T Consensus 237 gl~----~---~~vleni~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 237 GLD----P---DDALNNVAYARA-----YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp TCC----H---HHHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CCC----h---HhHhhcEEEecc-----CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 542 1 245566554221 1111 11111111 112246899999999998885
No 159
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.33 E-value=1.8e-07 Score=85.66 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=34.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++++++.+++|++++|+||||||||||+++|++.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999999999999999999999987
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.33 E-value=4.7e-07 Score=80.29 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+|++++|+|||||||||++..|++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999983
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.30 E-value=9.8e-07 Score=73.08 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+|+|.|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 162
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=1.7e-07 Score=84.71 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=48.2
Q ss_pred ccceEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 74 ~~~~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.+++.+++.+.|+... +++++++.+.+|.+++|+|++|+|||||++.|++.+.
T Consensus 27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 455678888999887644 6689999999999999999999999999999999984
No 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=3.5e-07 Score=76.55 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999987
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.29 E-value=1.7e-07 Score=80.99 Aligned_cols=27 Identities=30% Similarity=0.657 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++|++|+|+|||||||||++++|+..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999999443
No 165
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.28 E-value=1.4e-07 Score=78.46 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=29.3
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
..++++|.+++.-. .+...++..|||+++.++++.|.
T Consensus 111 ~~~vv~d~pll~e~-----~~~~~~d~vi~v~a~~e~r~~Rl 147 (192)
T 2grj_A 111 SGLIVIEAALLKRM-----GLDQLCDHVITVVASRETILKRN 147 (192)
T ss_dssp CEEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHC
T ss_pred CCEEEEEEeceeec-----ChHHhCCEEEEEECCHHHHHHHH
Confidence 46899998866554 24467889999999999999884
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.27 E-value=3.8e-07 Score=74.70 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|++++|+||||||||||+++|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999999999854
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.26 E-value=6.2e-07 Score=72.44 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999987
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.23 E-value=6.2e-07 Score=73.62 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.++|+|+||||||||++.++|..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999999976
No 169
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=3.7e-07 Score=77.64 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.7
Q ss_pred cceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 100 isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
-+...++|++++|.|+|||||||++++|+++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999999886
No 170
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.21 E-value=7.8e-07 Score=80.96 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=41.8
Q ss_pred CCCcccCChhhhhhhhc---------cCCcEEEEeCCCCCCChhhHHHHHHhhcc
Q 024225 208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~---------~~~~ilIld~~~~~lDe~~~~~l~~~~~~ 253 (270)
.+|+||+|+++++.+++ ..++++++|||+..||+..++.+.+++..
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 58999999999999998 79999999999999999888888887753
No 171
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.21 E-value=6.1e-07 Score=72.18 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|++++|+|+|||||||++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999998
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=6.2e-07 Score=80.41 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=33.1
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+++|++++|++++|+|+||+||||++..|++.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999984
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=2.4e-06 Score=76.51 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=27.2
Q ss_pred hccCCcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEeccc
Q 024225 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFK 261 (270)
Q Consensus 223 l~~~~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~ 261 (270)
+..+++++|+||+.. +|+..+..+.+.+++ .|+++++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 345789999999999 898888888887763 35555554
No 174
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.18 E-value=1e-06 Score=81.82 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=39.8
Q ss_pred CCCcccCChhhhhhhhc----cCCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 208 ~~S~g~~~rv~~~~~l~----~~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
.+|+||+++++++.+++ .+++++|+|||+..||+..+..+.+++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 381 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR 381 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence 38999999999999887 4789999999999999988888777775
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.15 E-value=1.2e-06 Score=73.12 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.3
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++...+|++++|+||||||||||++.|.+.+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445689999999999999999999999987
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.14 E-value=7.9e-07 Score=85.31 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=28.3
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+++|++++|+|+||||||||+++|++.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 578999999999999999999999999993
No 177
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.13 E-value=1.4e-06 Score=83.45 Aligned_cols=48 Identities=27% Similarity=0.440 Sum_probs=41.0
Q ss_pred EeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 79 ~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-++++.+.|.... ++.++++++ +|++++|+||||+|||||++.|++.+
T Consensus 85 G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 85 GLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467777776533 668888888 89999999999999999999999998
No 178
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.11 E-value=1.3e-06 Score=76.81 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
..+++|+|+++++-. .+...++..|||+++.++++.|.
T Consensus 180 ~~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl 217 (281)
T 2f6r_A 180 GKTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRI 217 (281)
T ss_dssp TCCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHH
Confidence 357999999875533 23456789999999999988774
No 179
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.09 E-value=2.8e-07 Score=83.14 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=32.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~ 164 (270)
.+|+|+||+|||||||++.|+..+. +.+|..|++.+++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-------------------~~iis~Ds~qvYr 45 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-------------------GEIISGDSMQVYQ 45 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-------------------EEEEECCSSTTBT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-------------------Cceeccccccccc
Confidence 5899999999999999999999872 5678999985543
No 180
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.01 E-value=3.3e-06 Score=70.88 Aligned_cols=25 Identities=32% Similarity=0.678 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++|+||+||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999987
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.99 E-value=2e-06 Score=78.76 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred eEEeccchhhhhhhhccccccc--------------ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~--------------~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-+.++||+..|+... . .++ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er--~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR--L-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB--C-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc--c-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 367899999998632 2 456 8999999999999999999999999999999885
No 182
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.99 E-value=4.3e-06 Score=76.94 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=26.1
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++..|..+||+|+||||||||+++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999999999994
No 183
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.98 E-value=2.9e-05 Score=61.62 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhc---cceEEeccccchhhcc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFD---EKCYATSFKETYFNRE 268 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~---~~i~v~~~~~~~~~r~ 268 (270)
..+.+|+|+. .....++.+.+... ..||++++.++++.|.
T Consensus 77 ~~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~ 119 (179)
T 3lw7_A 77 NHDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRM 119 (179)
T ss_dssp CCSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHH
T ss_pred CCCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 4567888984 55555666667664 6799999998877663
No 184
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.95 E-value=5.6e-06 Score=67.09 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|++++|.|++||||||++++|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999988
No 185
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.94 E-value=5.9e-06 Score=70.32 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.0
Q ss_pred ccccceecC---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 97 l~~isl~i~---~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
|.++++.+. +|.++.|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 455666555 899999999999999999999999983
No 186
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.94 E-value=6.7e-06 Score=65.31 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=24.9
Q ss_pred cceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus 17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443 589999999999999999998665
No 187
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.92 E-value=2.1e-06 Score=76.68 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-++++|+|+||||||||++.|.|+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999985
No 188
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.92 E-value=6.7e-06 Score=67.17 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++|++..+|.+++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888899999999999999999999999998
No 189
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.87 E-value=6.9e-06 Score=68.20 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.2
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
...+|.+++|+|||||||||+++.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 36789999999999999999999999886
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.87 E-value=6.6e-06 Score=76.44 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=37.1
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++|.+.|+... .+++|+ +|++++|+|+|||||||++..|++.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346777776521 567777 899999999999999999999999994
No 191
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.86 E-value=6.4e-06 Score=65.55 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=48.1
Q ss_pred CcCCCCCCcccCChhhhh------hhhccCCcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecccc
Q 024225 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFKE 262 (270)
Q Consensus 203 ~~~~~~~S~g~~~rv~~~------~~l~~~~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~~ 262 (270)
+..+..+|+||+||++++ .++..+++++|+|||+..+|+...+.+.+++. ..|+++|+.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 345668999999999876 56777899999999999999987777777665 2367788763
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.86 E-value=1.4e-05 Score=74.81 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=32.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+++..-+.+|+++.|+|++|+|||||+..|++.+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 567777779999999999999999999999999977
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.85 E-value=3.9e-06 Score=74.37 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=37.9
Q ss_pred eccchhhhhhhhcccccccc-cceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~-isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++|.+.|+... .+ ++++.+ |++++++|++|+||||++..|++.+.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777776521 46 788876 99999999999999999999999984
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.83 E-value=7.3e-06 Score=67.87 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.1
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 227 ~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
...+|+|.+.+.-. .+...++..|||+++.++++.|.
T Consensus 105 ~~~vv~~~~~l~e~-----~~~~~~d~vi~l~~~~e~~~~Rl 141 (206)
T 1jjv_A 105 APYTLFVVPLLIEN-----KLTALCDRILVVDVSPQTQLARS 141 (206)
T ss_dssp SSEEEEECTTTTTT-----TCGGGCSEEEEEECCHHHHHHHH
T ss_pred CCEEEEEechhhhc-----CcHhhCCEEEEEECCHHHHHHHH
Confidence 44788898654332 13566788999999999988875
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.82 E-value=8.6e-06 Score=77.17 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=40.0
Q ss_pred EEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 78 l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+++++.+.|.... .+.++++++++| +.|.||||+|||||+++|++..
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 34567776665433 678999999999 9999999999999999999987
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.79 E-value=1.1e-05 Score=66.67 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|+|+|||||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 699999999999999999999 6
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=6e-06 Score=74.01 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=38.8
Q ss_pred ccchhhhhhhhcccccccccceecCCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 024225 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 81 ~~l~~~y~~~~~~v~~l~~isl~i~~gei--vgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+++...|+... +++.++..++.|++ +.|.||+|+||||+++++++.+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35566665433 55778888888988 99999999999999999999873
No 198
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.77 E-value=1.9e-05 Score=64.32 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.9
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+...+|.++.|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999999983
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.77 E-value=1.5e-05 Score=66.50 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=28.0
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+.+|.++.|.|++||||||+++.|++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 557889999999999999999999999998
No 200
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.72 E-value=1.8e-05 Score=80.02 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=57.7
Q ss_pred HHHHHhhccC---CCcCCCCCCcccCChhhhhhhhccCCc--EEEEeCCCCCCChhhHHHHHHhhc-------cceEEec
Q 024225 192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATS 259 (270)
Q Consensus 192 ~~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~~--ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~ 259 (270)
.+.+..++++ .+..+..+|+||+||++++.++...++ ++|+|||+..||+...+.+.++++ ..|+|+|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4456666664 245677999999999999999987665 999999999999988888877776 3488888
Q ss_pred cccc
Q 024225 260 FKET 263 (270)
Q Consensus 260 ~~~~ 263 (270)
|.+.
T Consensus 525 d~~~ 528 (916)
T 3pih_A 525 DEEV 528 (916)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8754
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.71 E-value=2.1e-05 Score=63.74 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..|.+++|.|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999876
No 202
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.68 E-value=2.2e-05 Score=64.43 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.++|+|+||||||||++.|+|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999974
No 203
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.65 E-value=3e-05 Score=61.77 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|+|.|++||||||+++.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 204
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.64 E-value=3.3e-05 Score=65.55 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.+|.+|+|+|++||||||+++.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999999977
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=4.2e-05 Score=64.47 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=26.7
Q ss_pred cccc-ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 97 TSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 97 l~~i-sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|+.+ .--+++|++++|+||||||||||+..++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3443 3458899999999999999999966554443
No 206
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.63 E-value=4e-05 Score=63.88 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=25.6
Q ss_pred cceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+++. ..+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~-~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFK-EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECC-SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeC-CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444 35899999999999999999987763
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.61 E-value=0.00014 Score=67.63 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++.+++++|++||||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999984
No 208
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.61 E-value=4.8e-05 Score=65.55 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+++|+||+|||||||++.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999987
No 209
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.60 E-value=1.5e-05 Score=75.77 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=47.3
Q ss_pred CCC-CcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhc------cceEEecccc
Q 024225 207 PSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD------EKCYATSFKE 262 (270)
Q Consensus 207 ~~~-S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~------~~i~v~~~~~ 262 (270)
..+ |+|++||+.++.++..++ ++||+|||+.++|......+.+++. ..|+|+|+.+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~ 459 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 459 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 356 999999999999999999 9999999999999977777777665 3478888754
No 210
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=3.9e-05 Score=61.66 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999987
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=3.2e-05 Score=70.23 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=26.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|+++.|.||+|||||||+..++..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999987
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.57 E-value=4.6e-05 Score=68.91 Aligned_cols=28 Identities=43% Similarity=0.691 Sum_probs=25.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.+.+|+|+|++|||||||++.|.|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999999999874
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.54 E-value=3.2e-05 Score=66.50 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.8
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.. ....+.++.|+|++||||||+++.|+..+
T Consensus 24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4433 57789999999999999999999999987
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.53 E-value=0.00044 Score=62.05 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCCe--EEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKH--IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~ge--ivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+. .+.|.||+|+|||||++.+++.+
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456 89999999999999999999998
No 215
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.53 E-value=4.1e-05 Score=61.48 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++|..|+|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998853
No 216
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.52 E-value=6.4e-05 Score=61.06 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999877
No 217
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.51 E-value=2.7e-05 Score=70.75 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=34.1
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+.+.++.+.|+... +.++++|+| +|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 478899999998644 557887765 99999999999999999775
No 218
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.50 E-value=6.5e-05 Score=60.77 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|.++.|.|++||||||+++.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999977
No 219
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.50 E-value=3.8e-05 Score=69.45 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=33.4
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|.|.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 456667775421 1236789999997 9999999999999999999993
No 220
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.49 E-value=6.6e-05 Score=61.22 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-.+++|+|++|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 36899999999999999999999873
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=7e-05 Score=64.10 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.++.+.++.| +.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 35555556555 88999999999999999999873
No 222
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=8.1e-05 Score=62.07 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~g 129 (270)
.+.+|+|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 223
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.46 E-value=7e-05 Score=60.49 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..+.+|.|.|++||||||+++.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999999887
No 224
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.45 E-value=7.9e-05 Score=60.92 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 225
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.45 E-value=7.9e-05 Score=60.98 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+..+|+|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 226
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.44 E-value=5e-05 Score=67.17 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++.+|+|+|++|+|||||++.|.|.-
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 345689999999999999999999863
No 227
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.44 E-value=6.7e-05 Score=60.39 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.|+|++||||||+++.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999988
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=7e-05 Score=61.04 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+++++++..+.. .|+|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 457888887665 6799999999999999999874
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=8.7e-05 Score=60.04 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+|.|+|++||||||+++.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999987
No 230
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.43 E-value=2.2e-05 Score=64.54 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=28.3
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~g 129 (270)
+++++++..+.++ |+|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 5688888887764 78999999999999999875
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.43 E-value=8.9e-05 Score=63.35 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.+++|.||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999987
No 232
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.43 E-value=0.00016 Score=58.66 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5899999999999999999999874
No 233
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.41 E-value=9.6e-05 Score=74.71 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHHHhhccC---CCcCCCCCCcccCChhhhhhhhccC--CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEecc
Q 024225 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSF 260 (270)
Q Consensus 193 ~~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~--~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~ 260 (270)
+.++.++++ .+..+..+|+||+||++++.++..+ ++++|+|||+..||+...+.+.++++ ..|+|+|+
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 346666665 3556779999999999999999887 48999999999999977766666655 45899999
Q ss_pred ccc
Q 024225 261 KET 263 (270)
Q Consensus 261 ~~~ 263 (270)
.++
T Consensus 566 l~~ 568 (972)
T 2r6f_A 566 EDT 568 (972)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.40 E-value=0.0001 Score=59.91 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=25.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++.+|+|.|++||||||+++.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999887
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.00012 Score=60.28 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|.+|+|.|++||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999883
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=0.00011 Score=59.43 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.+|+|.|++||||||+++.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999877
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.39 E-value=0.00011 Score=58.92 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~g 129 (270)
.+|.|.|++||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999998
No 238
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.37 E-value=0.00011 Score=60.31 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|.+|+|.|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.37 E-value=0.00011 Score=60.53 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+|.+|+|.|++||||||+++.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999998763
No 240
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.36 E-value=0.00019 Score=60.25 Aligned_cols=39 Identities=18% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHhhccceEEeccccchhhcc
Q 024225 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKCYATSFKETYFNRE 268 (270)
Q Consensus 226 ~~~ilIld~~~~~lDe~~~~~l~~~~~~~i~v~~~~~~~~~r~ 268 (270)
..+++++|-|+++=. ..+...+|..|||+++.++++.|.
T Consensus 111 ~~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl 149 (210)
T 4i1u_A 111 QGPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARV 149 (210)
T ss_dssp CSSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHH
Confidence 345788999866542 245678999999999999998774
No 241
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.35 E-value=8.5e-05 Score=58.96 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.35 E-value=4.7e-05 Score=62.99 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|+|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999883
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.34 E-value=0.00012 Score=60.04 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|.|++||||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999987
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.34 E-value=6.2e-05 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..+.+|+|.|++||||||+++.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999999987
No 245
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.34 E-value=0.00013 Score=60.22 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+|.+|+|.|++||||||+++.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998873
No 246
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.29 E-value=0.00014 Score=63.85 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.7
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
....|.++.|.|||||||||+++.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999998876
No 247
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.29 E-value=9.9e-05 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.+|.|.|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999999877
No 248
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.28 E-value=0.00017 Score=73.20 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred HHHhhccC---CCcCCCCCCcccCChhhhhhhhccC--CcEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 194 ~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~--~~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
.+..++++ .+..+..+|+||+||++++.++..+ ++++|+|||+..||+...+.+.++++ ..|+|+|+.
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 35555554 3556779999999999999999887 58999999999999976666666554 458999998
Q ss_pred cc
Q 024225 262 ET 263 (270)
Q Consensus 262 ~~ 263 (270)
++
T Consensus 584 ~~ 585 (993)
T 2ygr_A 584 DT 585 (993)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 249
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.27 E-value=0.00016 Score=58.49 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|.|.|++||||||+++.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 250
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.24 E-value=9.4e-05 Score=69.66 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=35.5
Q ss_pred eccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 80 ~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++++...+.... .+.++++.+++| +.|.||+|+|||||++.|++...
T Consensus 28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 345544444322 457778888877 88999999999999999999873
No 251
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.24 E-value=0.00019 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 252
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00022 Score=59.52 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999987
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.23 E-value=0.00044 Score=61.62 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.++.|+||+|||||||+..|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999999876
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.22 E-value=0.00023 Score=58.41 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-..+.+|+|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456799999999999999999999876
No 255
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.22 E-value=0.00025 Score=71.00 Aligned_cols=69 Identities=12% Similarity=-0.036 Sum_probs=55.7
Q ss_pred HHHhhccC---CCcCCCCCCcccCChhhhhhhhccCC--cEEEEeCCCCCCChhhHHHHHHhhc-------cceEEeccc
Q 024225 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD-------EKCYATSFK 261 (270)
Q Consensus 194 ~l~~l~~~---~~~~~~~~S~g~~~rv~~~~~l~~~~--~ilIld~~~~~lDe~~~~~l~~~~~-------~~i~v~~~~ 261 (270)
.+..++++ .+.....+|+|++||++++.++...+ +++|+|||+..||+...+.+.++++ ..|+|+|+.
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45556654 24567799999999999999999887 5999999999999977777776654 448999988
Q ss_pred c
Q 024225 262 E 262 (270)
Q Consensus 262 ~ 262 (270)
+
T Consensus 442 ~ 442 (842)
T 2vf7_A 442 D 442 (842)
T ss_dssp H
T ss_pred H
Confidence 6
No 256
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.22 E-value=0.00016 Score=58.13 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999884
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.22 E-value=0.00017 Score=59.46 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998765
No 258
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00024 Score=57.32 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.+|+|.|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999887
No 259
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.21 E-value=0.00024 Score=58.34 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.+|+|.|++||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999987
No 260
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.19 E-value=0.00024 Score=65.29 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.8
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+..+..++|+|+||+|||||++.|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4667889999999999999999999986
No 261
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.00025 Score=56.44 Aligned_cols=25 Identities=36% Similarity=0.390 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-++++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999987
No 262
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.18 E-value=0.00042 Score=61.94 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=31.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccCCCCCCCCCceEEeecCCCCccc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~~~~~~~G~~~~~~~~~p~~g~~i~~dg~~~~~ 164 (270)
.++.|+||+|||||||.+.|+..+. +.++..|....++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-------------------~~iis~Ds~qvy~ 43 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-------------------CELISVDSALIYR 43 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-------------------EEEEEECTTTTBT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-------------------CcEEeccchhhhc
Confidence 5899999999999999999999872 4567777765543
No 263
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00019 Score=58.01 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|+|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.17 E-value=0.00018 Score=71.96 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=28.5
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.+.+|+.+.|.||||||||||+++|++.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999999999987
No 265
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.16 E-value=0.00022 Score=58.12 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=41.1
Q ss_pred cCCCCCCcccCChhhhhhhhcc----CCcEEEEeCCCCCCChhhHHHHHHhhc
Q 024225 204 VYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (270)
Q Consensus 204 ~~~~~~S~g~~~rv~~~~~l~~----~~~ilIld~~~~~lDe~~~~~l~~~~~ 252 (270)
..+..+|+|+++|++++.+++. +++++|+|||+..||+.....+.+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~ 112 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIK 112 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHH
Confidence 3456799999999999988863 468999999999999987777777765
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00025 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998877
No 267
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.16 E-value=0.00026 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 268
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.15 E-value=0.00023 Score=56.72 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|+|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 269
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.15 E-value=0.00016 Score=58.44 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
No 270
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00025 Score=62.37 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=27.3
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+.++..+.|.||+|+|||||++.|++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 446788999999999999999999999987
No 271
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.13 E-value=0.00045 Score=62.11 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.++.|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999887
No 272
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.12 E-value=0.00017 Score=65.15 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.9
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-+++|+++.|.||+|||||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37799999999999999999998888765
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.12 E-value=0.00026 Score=59.39 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999876
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.11 E-value=0.00033 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 275
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.11 E-value=0.00037 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++-+|+|.||+||||||+++.|+..+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999876
No 276
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=0.00026 Score=59.17 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.+|.|.|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999887
No 277
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.10 E-value=0.0004 Score=58.61 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.0
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+-...+..+|.|+||+||||+|.++.|+..+
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446778999999999999999999999987
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.0003 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.06 E-value=0.00078 Score=59.88 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.++.|+||+|||||||+..|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999999886
No 280
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.03 E-value=0.00046 Score=59.44 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 281
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00038 Score=66.03 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.2
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999 99999999999999999999987
No 282
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.00 E-value=0.00035 Score=68.43 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=26.6
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++++++++.++|+|++|+|||||++.|++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 4567889999999999999999999999876
No 283
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.95 E-value=0.00059 Score=63.34 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.++|+|+||+|||||++.|.|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999974
No 284
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.92 E-value=0.001 Score=59.69 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999999999874
No 285
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.91 E-value=0.00044 Score=58.42 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.|.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 568999999999999999999864
No 286
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.91 E-value=0.0011 Score=61.06 Aligned_cols=25 Identities=32% Similarity=0.674 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+++|+||+|||||||+..|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3579999999999999999999887
No 287
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.91 E-value=0.00047 Score=62.65 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|+|+|++|||||||++.|+|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999865
No 288
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.90 E-value=0.00053 Score=62.20 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=43.0
Q ss_pred CCCCcccCChhhh------hhhhccC-CcEEEEeCCCCCCChhhHHHHHHhhcc------ceEEecccc
Q 024225 207 PSFDHGVGDPVED------DILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE------KCYATSFKE 262 (270)
Q Consensus 207 ~~~S~g~~~rv~~------~~~l~~~-~~ilIld~~~~~lDe~~~~~l~~~~~~------~i~v~~~~~ 262 (270)
..+|+||++++.+ +.++... ++++|+|||+..+|+.....+.+++.. .|.++|+.+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 4789999998854 4555668 999999999999999888877777652 355666543
No 289
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.90 E-value=0.00054 Score=59.84 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
...+.|.||+|+||||+++.|++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999999983
No 290
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00062 Score=57.14 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999877
No 291
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.00058 Score=56.94 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|-+|.|.|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999987
No 292
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.85 E-value=0.00046 Score=59.67 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999874
No 293
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.85 E-value=0.00057 Score=61.51 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=29.8
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444458999999999999999999999888876
No 294
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.83 E-value=0.00063 Score=56.47 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999999986
No 295
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00092 Score=56.35 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+..|.|.|+.||||||+++.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999887
No 296
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.80 E-value=0.00072 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 297
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.78 E-value=0.00095 Score=55.49 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999874
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.74 E-value=0.00072 Score=61.60 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.-++|+|++||||||+++.|...+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998873
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.74 E-value=0.00086 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 300
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.0009 Score=58.37 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+|.|.|++||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0011 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
...-.|+|+|++|+|||||++.|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999998864
No 302
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.73 E-value=0.0012 Score=55.44 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-+|.+|.|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999884
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.72 E-value=0.001 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.70 E-value=0.0013 Score=58.60 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.5
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999999998865
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.70 E-value=0.00098 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.69 E-value=0.001 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++.-.|+|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999874
No 307
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.69 E-value=0.0016 Score=61.81 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHH
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~g 129 (270)
.+++++.++.-+.|+|.+||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3678888899999999999999999998875
No 308
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.00088 Score=59.79 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999873
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.68 E-value=0.001 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 310
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.0014 Score=52.06 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+..+.|.||+|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4457789999999999999999999873
No 311
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.0012 Score=57.42 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.-+.|.||+|+||||+++.|++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999987
No 312
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.67 E-value=0.0012 Score=55.16 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999877
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.66 E-value=0.001 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 314
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.66 E-value=0.00092 Score=56.72 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=22.9
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+|.+|.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999884
No 315
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.66 E-value=0.00094 Score=61.63 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.8
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.-..+.+|.|+|++||||||+++.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 445568999999999999999999998765
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.65 E-value=0.0011 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 317
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.00072 Score=57.11 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=24.4
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.+..|+.+.|.||+||||||++..+...
T Consensus 70 i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 70 LEAISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 334667999999999999999988776543
No 318
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.64 E-value=0.0012 Score=56.30 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|.+|.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999884
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.63 E-value=0.0011 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.63 E-value=0.0025 Score=59.36 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++.++.++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999884
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.63 E-value=0.0012 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.62 E-value=0.0013 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 324
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.62 E-value=0.0012 Score=52.20 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 325
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0013 Score=55.65 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|.+|+|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999987
No 326
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.61 E-value=0.0011 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 327
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.00092 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998764
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.001 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 329
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.60 E-value=0.0015 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999873
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.58 E-value=0.0017 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+.-.|+|+|++|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999764
No 331
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.57 E-value=0.0013 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 332
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.56 E-value=0.0018 Score=54.71 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-.+|.+|.|.|++||||||+++.|...+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999999884
No 333
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.55 E-value=0.0011 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999985
No 334
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.54 E-value=0.0014 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 335
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.54 E-value=0.0016 Score=57.98 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=29.8
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+++..+++ .|.-+.|.|+||+||||++..|.+.
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 567777887 6899999999999999999999873
No 336
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999885
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.53 E-value=0.0014 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 338
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.53 E-value=0.0017 Score=54.54 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+|.+|.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999884
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.52 E-value=0.0015 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 340
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.51 E-value=0.0012 Score=51.68 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 341
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0017 Score=56.07 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..+.-+.|.||+|+|||||++.|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999987
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.50 E-value=0.0016 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+|+|++|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 343
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.50 E-value=0.0018 Score=54.45 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+|.+|.|-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999983
No 344
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.48 E-value=0.00088 Score=52.36 Aligned_cols=22 Identities=45% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998754
No 345
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.47 E-value=0.0023 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|+.|+|||||++.|.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999998863
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.46 E-value=0.0016 Score=54.15 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=27.6
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++..-+++ .|..|.|+||+|+|||||+..|+...
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345555555 47889999999999999999887654
No 347
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.45 E-value=0.0017 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999874
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.45 E-value=0.0013 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999998875
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.45 E-value=0.0013 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
..-.|+|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0017 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 351
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.44 E-value=0.0018 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 352
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.44 E-value=0.0011 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
..-.|+|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998764
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.44 E-value=0.0019 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998865
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.44 E-value=0.0016 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 355
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.43 E-value=0.0019 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999877664
No 356
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.001 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 357
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.43 E-value=0.0016 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.43 E-value=0.002 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 359
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.42 E-value=0.0018 Score=51.35 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+..+.|.||+|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999873
No 360
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.40 E-value=0.002 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.0019 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.+++|+|+.|+|||||++.|++.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 362
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.38 E-value=0.0024 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+.-.|+|+|+.|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998864
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.38 E-value=0.0021 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 364
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.38 E-value=0.002 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 365
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.37 E-value=0.0024 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999998873
No 366
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.37 E-value=0.00096 Score=57.29 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++.+|+|.|+.||||||+++.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998876
No 367
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.37 E-value=0.00092 Score=57.23 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=25.9
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.....+.| +.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 3444445555 77999999999999999999873
No 368
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.37 E-value=0.0022 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.36 E-value=0.0018 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999998753
No 370
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.36 E-value=0.0018 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|.+|+|||||++.|.|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999998853
No 371
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.36 E-value=0.0014 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998874
No 372
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.36 E-value=0.0016 Score=59.07 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.2
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++++++++.+| +++|+|||||||||++++|.++.
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 458899999999 99999999999999999999864
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.35 E-value=0.001 Score=66.49 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.5
Q ss_pred cceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 100 isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678899999999999999999999999984
No 374
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.35 E-value=0.0021 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 375
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0014 Score=58.99 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
...-.++|+|++|+|||||++.|++..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998754
No 376
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.34 E-value=0.0029 Score=53.56 Aligned_cols=28 Identities=39% Similarity=0.549 Sum_probs=24.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+..+.-+.|.||+|+||||+++.|+..+
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445668899999999999999999987
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.33 E-value=0.0024 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999865
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.33 E-value=0.002 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+||+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 379
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.33 E-value=0.0022 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 380
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.32 E-value=0.0023 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.31 E-value=0.0025 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.|.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0021 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 383
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.002 Score=56.82 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+..+.|.||+|+|||||++.|+..+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 384
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.30 E-value=0.0025 Score=51.79 Aligned_cols=24 Identities=42% Similarity=0.338 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.+.|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCc
Confidence 468999999999999999998753
No 385
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.0017 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~g 129 (270)
.+.-.|+|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988863
No 386
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.28 E-value=0.002 Score=56.83 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999885
No 387
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0015 Score=57.84 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 024225 110 VGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 110 vgL~GpnGsGKSTLlk~L~gll 131 (270)
+.|.||+|+||||+++.|++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 388
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0022 Score=52.58 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.3
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.++.|.-...-.|+|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 444444444567999999999999999999874
No 389
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.27 E-value=0.0025 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 390
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.27 E-value=0.0026 Score=57.76 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 357899999999999999999984
No 391
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.27 E-value=0.002 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+.-+|+|+|.+|+|||||++.|.|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999885
No 392
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++.-.|+|+|+.|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999875
No 393
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.25 E-value=0.0018 Score=60.12 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++.+|+|+|++|+||||++..|++.+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999999873
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.25 E-value=0.0026 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.24 E-value=0.0026 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 396
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0026 Score=51.25 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 397
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.23 E-value=0.0023 Score=56.65 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=30.0
Q ss_pred cccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 96 ~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345555558999999999999999999998887654
No 398
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.23 E-value=0.0026 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.-.|+|+|+.|+|||||++.+.+..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 345678999999999999999998853
No 399
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0033 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357899999999999999999874
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0024 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988753
No 401
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.22 E-value=0.0021 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 402
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.21 E-value=0.0028 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999874
No 403
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.21 E-value=0.0021 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999986
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.20 E-value=0.0025 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 405
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0032 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999998753
No 406
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.18 E-value=0.0034 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.+||+|+.||||||+++.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999887
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.18 E-value=0.0032 Score=50.78 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|++|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998753
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0038 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+.-.|+|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.18 E-value=0.0063 Score=54.75 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
-....+|+|+|+.|+|||||+..|++.+
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999999887
No 410
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.18 E-value=0.0026 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++.-.|+|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999998763
No 411
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.17 E-value=0.0026 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 412
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.16 E-value=0.0025 Score=51.79 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 413
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.14 E-value=0.0016 Score=53.16 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998764
No 414
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.13 E-value=0.0037 Score=54.70 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
++.+..+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567788999999999999999999873
No 415
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.12 E-value=0.0036 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999988874
No 416
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.12 E-value=0.0028 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|.+|+|||||++.|.|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999853
No 417
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.11 E-value=0.0044 Score=51.54 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999883
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.11 E-value=0.0036 Score=51.31 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|+.|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998753
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.10 E-value=0.0032 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
....++|+|.+|+|||||++.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 420
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.10 E-value=0.0035 Score=58.70 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=27.9
Q ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 102 l~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.+-+|+.++|.|++|+|||||++.|+....
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5677899999999999999999999988763
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.09 E-value=0.003 Score=55.83 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.4
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999988865
No 422
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0034 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+.-.|+|+|+.|+|||||++.+.+-
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999853
No 423
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.08 E-value=0.0032 Score=58.43 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999873
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.08 E-value=0.0034 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999885
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0042 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
..-.|+|+|+.|+|||||++.+.+-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999874
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.05 E-value=0.0041 Score=50.62 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=25.5
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
++..-+++ .|.-|.|.|+||+|||||+..|...
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34444444 4889999999999999999888763
No 427
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.03 E-value=0.0038 Score=59.13 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++|.+|.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999994
No 428
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.03 E-value=0.0025 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0038 Score=52.25 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVV 128 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~ 128 (270)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986554
No 430
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.00 E-value=0.0031 Score=57.14 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=26.2
Q ss_pred cccceecCCCeEEEEECCCCCCHHHHHHHHHH-Hh
Q 024225 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RI 131 (270)
Q Consensus 98 ~~isl~i~~geivgL~GpnGsGKSTLlk~L~g-ll 131 (270)
++..+++.+ .+..|.|+|||||||++..|.= ++
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555544 6899999999999999999986 44
No 431
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.00 E-value=0.0031 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
-.|+|+|.+|||||||++.|.|.-
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 432
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.99 E-value=0.0021 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gl 130 (270)
.|+|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998664
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.98 E-value=0.0037 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 434
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 435
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.96 E-value=0.0038 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|++|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998774
No 436
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.95 E-value=0.0024 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 437
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.95 E-value=0.0033 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 438
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.94 E-value=0.0033 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.94 E-value=0.0023 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.93 E-value=0.0028 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
..-.|+|+|+.|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998764
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.93 E-value=0.0053 Score=58.99 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.|.+|.|.|.+||||||+++.|...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999987
No 442
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.93 E-value=0.0034 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|||||||++.|.|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 46999999999999999999986
No 443
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.005 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999876
No 444
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.90 E-value=0.0015 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998775
No 445
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.90 E-value=0.0022 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987754
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.89 E-value=0.0055 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
..+.-+.|.||+|+||||+++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999874
No 447
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.89 E-value=0.005 Score=47.83 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.-|.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345568999999999999999998875
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.84 E-value=0.0054 Score=50.70 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-+|+|.|+.||||||+.+.|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999998
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.84 E-value=0.0038 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998763
No 450
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0045 Score=55.18 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999999987
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.83 E-value=0.0052 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 46899999999999999998764
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.81 E-value=0.0056 Score=55.31 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++|.++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998888765
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.81 E-value=0.01 Score=56.17 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.++.+|+|+|++|+||||++..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998774
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0054 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 455
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.80 E-value=0.0047 Score=56.95 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=37.5
Q ss_pred eEEeccchhhhhhhhcccccccccceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 77 ~l~~~~l~~~y~~~~~~v~~l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-++++|+ +.|++. . .+++..|++++|+||||||||||+++|.+++.
T Consensus 6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3788888 788541 1 24567799999999999999999999999984
No 456
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.79 E-value=0.005 Score=49.84 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=20.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.+.-.|+|+|+.|+|||||++.+.+-
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998754
No 457
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.79 E-value=0.0042 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|++|+|||||++.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999877743
No 458
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.78 E-value=0.0064 Score=58.97 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+|.+|.|.|.+||||||+++.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 459
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.77 E-value=0.014 Score=54.22 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.5
Q ss_pred ceecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 101 sl~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.-.+..+++++|++|+||||++-.|+..+.
T Consensus 94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33334578999999999999999999998874
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0069 Score=53.72 Aligned_cols=28 Identities=39% Similarity=0.450 Sum_probs=24.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++.-+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456778999999999999999999986
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0048 Score=51.37 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|.+|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998763
No 462
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.74 E-value=0.0073 Score=57.34 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.+|.++|.+||||||+.+.|+..+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999876
No 463
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.73 E-value=0.0061 Score=50.99 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+++...+.|.||+|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666679999999999999999999998
No 464
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.73 E-value=0.0063 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~g 129 (270)
.+.-.|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998854
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.71 E-value=0.0061 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 466
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.71 E-value=0.0049 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|..|+|||||++.|.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999875
No 467
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.69 E-value=0.0045 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-.|+|+|.+|+|||||++.|.|.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999998863
No 468
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.69 E-value=0.0069 Score=49.50 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+.-.|+|+|+.|+|||||++.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999988864
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0058 Score=49.94 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
.-.|+|+|+.|+|||||++.+.+-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 470
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.67 E-value=0.0063 Score=54.62 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
++.-+.|.||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999987
No 471
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0081 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 024225 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLl-k~L~gll 131 (270)
+|.++.|.||.||||||++ +++....
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999998 5555444
No 472
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.66 E-value=0.0026 Score=59.28 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 024225 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 109 ivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.|.||+|+|||||++.|+..+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 489999999999999999999873
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.64 E-value=0.0024 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=5.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999988876
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.63 E-value=0.0074 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.-+.|.||+|+||||+++.|+..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999883
No 475
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.62 E-value=0.0054 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+++|++|+|||||++.|.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.58 E-value=0.0089 Score=55.81 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.+|.++|.+||||||+++.|+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999876
No 477
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.57 E-value=0.0091 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHH-HHHHHh
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAA-EVVRRI 131 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk-~L~gll 131 (270)
+++| ++-|.||+|+|||||+- .++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789 89999999999999964 444444
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.57 E-value=0.0088 Score=51.27 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
....-+.|.||+|+|||||++.|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455778899999999999999999987
No 479
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.55 E-value=0.006 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
..++|+|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 589999999999999999999864
No 480
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.52 E-value=0.0081 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+|..+.|.||+|+|||||++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999998
No 481
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.0095 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+..+.|.||+|+|||||++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999987
No 482
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.47 E-value=0.0076 Score=55.90 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.5
Q ss_pred ccccceecCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 97 l~~isl~i~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44454458899999999999999999998888765
No 483
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.47 E-value=0.01 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
....-+.|.||+|+|||||++.|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999986
No 484
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.46 E-value=0.0027 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|+.|+|||||++.|.+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988753
No 485
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.44 E-value=0.01 Score=56.73 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.|.+|.|.|++||||||+++.|...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999877
No 486
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.40 E-value=0.0047 Score=57.49 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gl 130 (270)
-.|+|+|.+|+|||||++.|.|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999874
No 487
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.39 E-value=0.0069 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 024225 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (270)
Q Consensus 106 ~geivgL~GpnGsGKSTLlk~L~g 129 (270)
+.-.|+|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998853
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.38 E-value=0.012 Score=51.98 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.++.-+.|.||+|+|||+|++.|+..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345678999999999999999999987
No 489
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.36 E-value=0.0099 Score=54.44 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=30.8
Q ss_pred ccceecCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 024225 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (270)
Q Consensus 99 ~isl~i~~geivgL~GpnGsGKSTLlk~L~gll~~ 133 (270)
|.-+.+.+|+..+|+|++|+|||||+..|+....+
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 45577999999999999999999999999988753
No 490
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.013 Score=54.37 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 104 i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
+.+..=+.|.||+|+|||+|++.|++.++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55566689999999999999999999883
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.013 Score=54.27 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=26.2
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
-++...=|.|.||+|+|||+|++.|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 356667788999999999999999999874
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.27 E-value=0.0092 Score=53.25 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHH
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gl 130 (270)
-+.+|.++.|.||+|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677888999999999999999998765
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.013 Score=54.42 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=26.0
Q ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 024225 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (270)
Q Consensus 103 ~i~~geivgL~GpnGsGKSTLlk~L~gll~ 132 (270)
.+.+..=|.|.||+|+|||+|++.|++.+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356667788999999999999999999874
No 494
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.22 E-value=0.032 Score=47.16 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.+.-++.+.|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999887
No 495
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.22 E-value=0.0098 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gl 130 (270)
+-.|+|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998765
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.21 E-value=0.014 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.-+.|.||+|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.20 E-value=0.011 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 024225 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 108 eivgL~GpnGsGKSTLlk~L~gll 131 (270)
..+.|.||+|+|||||++.|+..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 458899999999999999999887
No 498
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.19 E-value=0.015 Score=48.92 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
.-+|+|.|+.||||||+.+.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999988
No 499
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.19 E-value=0.011 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 105 ~~geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.+-.++|+|.+|+|||||++.|.|.-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 345689999999999999999998753
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.18 E-value=0.012 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 024225 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (270)
Q Consensus 107 geivgL~GpnGsGKSTLlk~L~gll 131 (270)
+.-+.|.||+|+||||+++.|+..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999987
Done!