BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024226
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 67 CCSCCLWVTITLIILILLVAIAGGILYVLYRPHRPSFSVSSLKIQTLNLTSSQTLVTNIN 126
CC+CCL I + L++ R +P S+ + I L + T +N
Sbjct: 14 CCTCCL-------SFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLN 66
Query: 127 LNVITRNPNKELVFYYDPITVTVTSGDNDDVN------VGAGSFPSFRHGTKNTTELKAS 180
V NPNK+ YYD + + ++ + +N VG + P F G K KA
Sbjct: 67 FMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK----KAK 122
Query: 181 IKGNGQELDDASASKVKSQLKSKSGLPLKIKLETKVKVKMGAVKSPK------VRIRVTC 234
G + L++ + +++ L + S + ++ L+T+V+ K+ K+ + + V
Sbjct: 123 KWGQVKPLNNQTV--LRAVLPNGSAV-FRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNG 179
Query: 235 EGIKA 239
+G+KA
Sbjct: 180 DGVKA 184
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 95 LYRPHRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDN 154
+ R + F V ++ +L S+ L +++LN+ RN + +YD TV +
Sbjct: 1 MVRSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQ 60
Query: 155 DDVNVGAGSFPSFRHGTKNTTELKASIKG 183
+GA P F G+KNT L+A +G
Sbjct: 61 ---RLGAVPMPLFYLGSKNTMLLRALFEG 86
>sp|Q9Y5H9|PCDA2_HUMAN Protocadherin alpha-2 OS=Homo sapiens GN=PCDHA2 PE=1 SV=1
Length = 948
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 82 ILLVAIAGG----------ILYVL-YRPHRPSFSVSSLKIQTLNLTSSQTLVTNINLNVI 130
+LLVA GG ++ VL + P+F+ S K++ L T++ TLV +N +
Sbjct: 210 LLLVATDGGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKLLENTANGTLVVKLNASDA 269
Query: 131 TRNPNKELVF 140
PN E+V+
Sbjct: 270 DEGPNSEIVY 279
>sp|Q9GLM4|TENS1_BOVIN Tensin-1 OS=Bos taurus GN=TNS1 PE=2 SV=1
Length = 1715
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 3 DRVYPSAKPTTNGTRNGTATTPAAASGAASTGTPSFPATKAQLYGAARPAYRPQPKRHRY 62
DR P +T R T + ++ASG + TPSFP + A G + PA P P +
Sbjct: 1297 DRHVPYGGYSTPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAF 1356
Query: 63 RR 64
R+
Sbjct: 1357 RQ 1358
>sp|Q9Y5H7|PCDA5_HUMAN Protocadherin alpha-5 OS=Homo sapiens GN=PCDHA5 PE=2 SV=1
Length = 936
Score = 31.6 bits (70), Expect = 5.8, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 101 PSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVG 160
P F S ++ L S TLV +N + NKE+V+++ + + DDV
Sbjct: 239 PEFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVL-------DDVK-- 289
Query: 161 AGSFPSFRHGTKNTTELKASIKGNGQ-ELDDASASKVKSQLKSKSGLPLKIKLETKVKVK 219
S NT E+K NG+ + +D ++ ++ KS PL + VK+
Sbjct: 290 -----SKFIINSNTGEIKV----NGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLL 340
Query: 220 MGAVKSPKVRIRVTCEGIKATAPAGKKASLASTSN 254
+P++ I +K AP +L S S+
Sbjct: 341 DVNDNTPEMAITTLFLPVKEDAPLSTVIALISVSD 375
>sp|A7XV07|SKIT8_MOUSE Selection and upkeep of intraepithelial T-cells protein 8 OS=Mus
musculus GN=Skint8 PE=2 SV=1
Length = 397
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 65 SCCCSCCLWVTITLIILILLVAIAGGILYVLYRPHRPSFSVSSLKIQTLNLTSSQTLVTN 124
S C S CL V + + I+ + G+L+ +Y PHR S+S + N ++ L+
Sbjct: 275 SGCLSKCLPVVTSWPVQIVHFLVCSGVLFAVYLPHRYRVSLSDPQFPLYNNWITELLIVI 334
Query: 125 INLNV 129
+ L +
Sbjct: 335 LFLTI 339
>sp|A4G4S2|EFTS_HERAR Elongation factor Ts OS=Herminiimonas arsenicoxydans GN=tsf PE=3
SV=1
Length = 293
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 179 ASIKGNGQELDDASASKVKSQLKSKSGLPLKIKLETKVKVKMGAVKSPKVRIRVTCEGIK 238
A++ G + L DA + K L G P+K + ++VK+G+ K+ K RVT EG+
Sbjct: 6 AAMVGELRALTDAPMMECKKALTEADGDPVKAEE--ILRVKLGS-KASKAASRVTAEGVV 62
Query: 239 ATAPAGKKASLASTSNAKCKVDWRIKIWKF 268
A+ G +L + C+ D+ K +F
Sbjct: 63 ASCVVGNVGALVEVN---CETDFVTKNDEF 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,689,035
Number of Sequences: 539616
Number of extensions: 3742084
Number of successful extensions: 16162
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 16121
Number of HSP's gapped (non-prelim): 77
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)