Query 024226
Match_columns 270
No_of_seqs 189 out of 842
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 5.5E-36 1.2E-40 263.2 24.0 181 65-262 34-218 (219)
2 PF03168 LEA_2: Late embryogen 99.4 3.4E-12 7.4E-17 97.6 9.5 98 128-235 1-100 (101)
3 smart00769 WHy Water Stress an 98.4 7.8E-06 1.7E-10 63.2 11.1 83 120-211 12-95 (100)
4 PF07092 DUF1356: Protein of u 97.6 0.001 2.3E-08 59.0 12.3 81 98-182 98-180 (238)
5 PF12751 Vac7: Vacuolar segreg 97.6 0.00032 7E-09 66.0 9.0 78 63-150 295-374 (387)
6 COG5608 LEA14-like dessication 97.0 0.02 4.3E-07 47.5 11.8 105 99-216 31-136 (161)
7 PLN03160 uncharacterized prote 96.1 0.067 1.5E-06 47.2 10.7 105 59-176 31-147 (219)
8 TIGR02588 conserved hypothetic 87.8 1 2.2E-05 36.2 4.5 57 73-137 5-63 (122)
9 PF14155 DUF4307: Domain of un 79.8 27 0.00059 27.4 9.6 28 154-184 72-101 (112)
10 TIGR03602 streptolysinS bacter 75.8 0.77 1.7E-05 30.8 -0.3 8 65-72 25-32 (56)
11 PRK05529 cell division protein 73.8 6.7 0.00015 35.3 5.2 15 100-114 58-72 (255)
12 PF09307 MHC2-interact: CLIP, 70.3 1.4 3.1E-05 35.0 0.0 33 64-97 25-57 (114)
13 PRK10893 lipopolysaccharide ex 67.4 32 0.0007 29.6 7.9 29 97-127 37-65 (192)
14 PRK13150 cytochrome c-type bio 63.6 35 0.00077 28.7 7.1 65 125-199 78-146 (159)
15 PRK13183 psbN photosystem II r 61.8 11 0.00025 24.9 3.0 23 76-98 10-32 (46)
16 CHL00020 psbN photosystem II p 59.6 13 0.00028 24.3 2.9 24 75-98 6-29 (43)
17 PF10907 DUF2749: Protein of u 59.4 14 0.00029 26.4 3.2 17 83-99 12-28 (66)
18 PF09911 DUF2140: Uncharacteri 57.6 16 0.00036 31.3 4.2 25 77-101 7-31 (187)
19 PF09624 DUF2393: Protein of u 57.3 31 0.00068 28.0 5.7 62 88-161 33-96 (149)
20 PRK07021 fliL flagellar basal 56.5 23 0.0005 29.5 4.9 11 140-150 78-88 (162)
21 PF11906 DUF3426: Protein of u 56.2 65 0.0014 26.0 7.4 58 104-164 49-106 (149)
22 COG1580 FliL Flagellar basal b 55.9 26 0.00056 29.5 5.0 27 71-97 17-43 (159)
23 PHA02819 hypothetical protein; 54.8 6.8 0.00015 28.3 1.1 25 69-93 42-66 (71)
24 PF10177 DUF2371: Uncharacteri 54.7 21 0.00045 29.4 4.1 21 77-99 44-64 (141)
25 PHA03054 IMV membrane protein; 54.6 6.7 0.00014 28.4 1.1 25 69-93 44-68 (72)
26 PF12505 DUF3712: Protein of u 54.2 1.1E+02 0.0023 24.2 8.8 67 158-230 2-69 (125)
27 PRK07718 fliL flagellar basal 53.6 25 0.00054 28.7 4.5 10 192-201 110-119 (142)
28 COG4698 Uncharacterized protei 53.4 11 0.00024 32.3 2.4 37 72-110 12-48 (197)
29 PF02468 PsbN: Photosystem II 53.3 9.9 0.00022 24.9 1.6 23 76-98 7-29 (43)
30 PHA02844 putative transmembran 53.1 7.9 0.00017 28.3 1.3 26 69-94 44-69 (75)
31 PHA02650 hypothetical protein; 52.7 7.4 0.00016 28.8 1.1 26 69-94 45-70 (81)
32 PF07423 DUF1510: Protein of u 50.5 10 0.00023 33.5 1.9 13 70-82 15-27 (217)
33 PF09604 Potass_KdpF: F subuni 49.9 4.3 9.4E-05 23.4 -0.4 20 81-100 5-24 (25)
34 PF14283 DUF4366: Domain of un 48.9 18 0.00039 32.0 3.1 20 84-103 171-190 (218)
35 PHA02975 hypothetical protein; 48.7 9.4 0.0002 27.5 1.1 25 69-93 40-64 (69)
36 PF15145 DUF4577: Domain of un 47.8 11 0.00024 29.7 1.5 26 73-98 63-88 (128)
37 PF12273 RCR: Chitin synthesis 47.2 15 0.00032 29.5 2.1 13 71-83 3-15 (130)
38 PRK06531 yajC preprotein trans 46.3 7.7 0.00017 30.8 0.4 11 90-100 14-24 (113)
39 PF14927 Neurensin: Neurensin 45.2 32 0.00069 28.4 3.8 12 82-93 54-65 (140)
40 KOG0810 SNARE protein Syntaxin 45.0 10 0.00022 35.2 1.0 8 64-71 270-277 (297)
41 PF05478 Prominin: Prominin; 44.9 20 0.00042 37.7 3.2 26 64-89 134-159 (806)
42 KOG3950 Gamma/delta sarcoglyca 43.0 40 0.00088 30.4 4.4 23 120-142 105-127 (292)
43 PRK01844 hypothetical protein; 42.4 22 0.00047 25.9 2.1 20 73-92 4-23 (72)
44 PF09753 Use1: Membrane fusion 41.6 26 0.00057 31.3 3.1 15 70-84 228-242 (251)
45 TIGR02115 potass_kdpF K+-trans 40.8 3.6 7.8E-05 24.0 -1.7 20 81-100 4-23 (26)
46 PRK12785 fliL flagellar basal 40.0 66 0.0014 27.0 5.1 11 140-150 86-96 (166)
47 PF04478 Mid2: Mid2 like cell 39.5 22 0.00047 29.7 2.0 21 83-103 62-82 (154)
48 KOG1326 Membrane-associated pr 38.5 47 0.001 35.7 4.6 8 50-57 1043-1050(1105)
49 PF03100 CcmE: CcmE; InterPro 37.2 75 0.0016 25.5 4.9 11 132-142 78-88 (131)
50 COG3763 Uncharacterized protei 37.1 28 0.00062 25.2 2.1 19 73-91 4-22 (71)
51 PRK14759 potassium-transportin 37.0 12 0.00026 22.4 0.1 20 81-100 9-28 (29)
52 PF07787 DUF1625: Protein of u 36.6 32 0.0007 30.6 2.9 15 84-98 234-248 (248)
53 PHA02692 hypothetical protein; 36.2 17 0.00036 26.3 0.8 11 69-79 41-51 (70)
54 PRK13159 cytochrome c-type bio 34.8 85 0.0019 26.3 4.9 54 135-199 82-139 (155)
55 KOG4331 Polytopic membrane pro 34.6 20 0.00044 37.5 1.3 9 2-10 21-29 (865)
56 TIGR01732 tiny_TM_bacill conse 34.2 33 0.00071 20.0 1.6 10 75-84 11-20 (26)
57 PRK00523 hypothetical protein; 34.1 35 0.00075 24.9 2.1 20 73-92 5-24 (72)
58 PRK14762 membrane protein; Pro 33.8 59 0.0013 18.8 2.6 12 70-81 3-14 (27)
59 PF15012 DUF4519: Domain of un 33.7 46 0.001 23.0 2.6 15 85-99 42-56 (56)
60 COG2332 CcmE Cytochrome c-type 33.6 1E+02 0.0022 25.7 5.0 23 128-150 75-97 (153)
61 PF07790 DUF1628: Protein of u 33.5 1.8E+02 0.0039 20.8 7.2 21 129-150 56-76 (80)
62 PF12751 Vac7: Vacuolar segreg 33.2 35 0.00075 32.7 2.6 14 77-90 312-325 (387)
63 PRK11901 hypothetical protein; 33.0 58 0.0013 30.6 3.9 15 75-89 42-56 (327)
64 PRK06975 bifunctional uroporph 32.9 1.5E+02 0.0032 30.5 7.3 7 71-77 325-331 (656)
65 PF06092 DUF943: Enterobacteri 32.5 26 0.00055 29.5 1.4 16 83-98 13-28 (157)
66 PTZ00201 amastin surface glyco 31.8 55 0.0012 28.4 3.4 25 66-93 100-124 (192)
67 PF12575 DUF3753: Protein of u 31.0 33 0.00072 25.0 1.6 6 71-76 46-51 (72)
68 PF03929 PepSY_TM: PepSY-assoc 30.6 50 0.0011 19.3 2.0 20 73-92 7-26 (27)
69 PF12505 DUF3712: Protein of u 30.1 91 0.002 24.5 4.2 25 122-147 99-123 (125)
70 PF02009 Rifin_STEVOR: Rifin/s 29.6 19 0.0004 33.4 0.1 21 77-97 260-280 (299)
71 PF09680 Tiny_TM_bacill: Prote 29.5 40 0.00086 19.2 1.4 9 77-85 11-19 (24)
72 PF13396 PLDc_N: Phospholipase 28.8 58 0.0012 20.9 2.4 24 71-99 23-46 (46)
73 COG5009 MrcA Membrane carboxyp 28.7 22 0.00048 37.0 0.5 35 70-104 4-38 (797)
74 PF06024 DUF912: Nucleopolyhed 28.7 71 0.0015 24.5 3.3 8 90-97 80-88 (101)
75 COG5294 Uncharacterized protei 26.3 76 0.0016 25.1 3.0 16 122-137 51-66 (113)
76 PF11770 GAPT: GRB2-binding ad 26.3 88 0.0019 26.1 3.5 17 82-98 20-36 (158)
77 PF08113 CoxIIa: Cytochrome c 26.2 22 0.00048 21.9 -0.0 12 83-94 13-24 (34)
78 PF14828 Amnionless: Amnionles 26.0 33 0.00071 33.5 1.1 22 82-103 348-369 (437)
79 PF06637 PV-1: PV-1 protein (P 25.9 58 0.0013 31.3 2.6 15 120-134 83-97 (442)
80 PF07760 DUF1616: Protein of u 25.7 2.9E+02 0.0063 25.1 7.3 52 89-142 153-209 (287)
81 PF15330 SIT: SHP2-interacting 25.5 39 0.00085 26.4 1.3 11 86-96 15-25 (107)
82 KOG2621 Prohibitins and stomat 24.5 2.2E+02 0.0047 26.3 6.0 34 102-135 91-131 (288)
83 PHA03049 IMV membrane protein; 24.0 26 0.00057 25.1 0.0 21 78-98 5-25 (68)
84 PF00927 Transglut_C: Transglu 23.5 2.8E+02 0.006 20.8 5.8 59 120-182 12-75 (107)
85 PF14654 Epiglycanin_C: Mucin, 23.2 79 0.0017 24.5 2.5 15 79-93 26-40 (106)
86 PF14257 DUF4349: Domain of un 22.8 80 0.0017 28.2 2.9 16 82-97 247-262 (262)
87 PF08055 Trp_leader1: Tryptoph 22.6 45 0.00097 17.4 0.7 7 263-269 6-12 (18)
88 COG5353 Uncharacterized protei 22.6 37 0.0008 28.3 0.6 29 71-99 6-34 (161)
89 PF05545 FixQ: Cbb3-type cytoc 22.4 23 0.00051 23.3 -0.5 10 91-100 25-34 (49)
90 PF09865 DUF2092: Predicted pe 22.3 5.3E+02 0.012 22.6 8.4 38 119-160 35-74 (214)
91 TIGR02745 ccoG_rdxA_fixG cytoc 22.3 7.4E+02 0.016 24.2 10.5 19 166-184 382-400 (434)
92 PF04906 Tweety: Tweety; Inte 22.2 1E+02 0.0022 29.7 3.7 21 68-89 59-79 (406)
93 PF11395 DUF2873: Protein of u 22.1 32 0.00069 21.8 0.1 10 87-96 23-32 (43)
94 KOG4298 CAP-binding protein co 22.0 1.2E+02 0.0025 26.5 3.6 31 71-101 148-179 (245)
95 TIGR01433 CyoA cytochrome o ub 22.0 95 0.0021 27.5 3.2 19 78-96 37-55 (226)
96 PF06692 MNSV_P7B: Melon necro 21.9 76 0.0016 21.9 1.9 9 95-103 31-39 (61)
97 PF06129 Chordopox_G3: Chordop 21.5 77 0.0017 25.0 2.2 20 125-144 51-74 (109)
98 PF05961 Chordopox_A13L: Chord 21.1 31 0.00067 24.8 -0.1 21 78-98 5-25 (68)
99 TIGR02106 cyd_oper_ybgT cyd op 21.1 1.7E+02 0.0036 17.7 3.1 11 71-81 4-14 (30)
100 PF15050 SCIMP: SCIMP protein 21.0 29 0.00064 27.8 -0.2 25 72-97 8-32 (133)
101 PF15482 CCER1: Coiled-coil do 20.7 28 0.0006 29.8 -0.5 15 163-178 174-188 (214)
102 COG1589 FtsQ Cell division sep 20.3 1E+02 0.0022 27.8 3.1 29 85-113 42-70 (269)
103 PF04573 SPC22: Signal peptida 20.3 4.9E+02 0.011 22.1 7.1 18 207-224 141-158 (175)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=5.5e-36 Score=263.25 Aligned_cols=181 Identities=18% Similarity=0.319 Sum_probs=149.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHheeeEEEecCCCCEEEEEEEEEeeeecCCC----ceeeEEEEEEEEEEcCCCeeeE
Q 024226 65 SCCCSCCLWVTITLIILILLVAIAGGILYVLYRPHRPSFSVSSLKIQTLNLTSS----QTLVTNINLNVITRNPNKELVF 140 (270)
Q Consensus 65 ~~cc~c~~~~~~~ll~lill~gia~li~~Lv~rP~~P~f~V~s~~l~~fnls~~----s~l~~~l~l~l~~~NPN~ki~i 140 (270)
++||+||+|++++++ +|+++++.++|++||||+|+|+|+++++++|++++. ..++++++++++++|||. ++|
T Consensus 34 ~~~~~c~~~~~a~~l---~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 34 RNCIKCCGCITATLL---ILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred ccceEEHHHHHHHHH---HHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 345555666666554 335667778899999999999999999999998652 267888999999999999 899
Q ss_pred EEcceEEEEEEecCCCeeeecccCCceeecCCceEEEEEEEEEcccccChHHHHHHHHhhhcCCcEeEEEEEEEEEEEEE
Q 024226 141 YYDPITVTVTSGDNDDVNVGAGSFPSFRHGTKNTTELKASIKGNGQELDDASASKVKSQLKSKSGLPLKIKLETKVKVKM 220 (270)
Q Consensus 141 ~Y~~~~v~v~~~~Y~g~~Lg~~~vP~F~q~~~ntt~v~~~l~~~~~~l~~~~~~~L~~d~~~~G~v~l~v~~~~~vr~kv 220 (270)
+|++++++++ |+|..+|++.+|+|+|++++++.+.+++......+-+ ..+|.+|+.+ |.++|+++++.++|+++
T Consensus 110 ~Y~~~~~~v~---Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~-G~v~l~~~~~v~gkVkv 183 (219)
T PLN03160 110 KYSNTTTTIY---YGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISS-GLLNMNSYTRIGGKVKI 183 (219)
T ss_pred EEcCeEEEEE---ECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhC-CeEEEEEEEEEEEEEEE
Confidence 9999999999 9999999999999999999999999987765543322 2468889654 89999999999999999
Q ss_pred eEEEeCceEEEEEcCceEeccCCCCCcccceecCCceeeeeE
Q 024226 221 GAVKSPKVRIRVTCEGIKATAPAGKKASLASTSNAKCKVDWR 262 (270)
Q Consensus 221 G~~~s~~~~v~V~C~~v~v~~~~~~~~~~~~~~~~~C~v~~~ 262 (270)
|.++++++.++++|+ +.+.+. ...+++++|+.+++
T Consensus 184 ~~i~k~~v~~~v~C~-v~V~~~------~~~i~~~~C~~~~~ 218 (219)
T PLN03160 184 LKIIKKHVVVKMNCT-MTVNIT------SQAIQGQKCKRHVD 218 (219)
T ss_pred EEEEEEEEEEEEEeE-EEEECC------CCEEeccEeccccc
Confidence 999889999999999 777553 24788999987643
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.37 E-value=3.4e-12 Score=97.61 Aligned_cols=98 Identities=27% Similarity=0.468 Sum_probs=74.8
Q ss_pred EEEEEcCCCeeeEEEcceEEEEEEecCCCeeee-cccCCceeecCCceEEEEEEEEEcccccChHHHHHHHHhhhcCCcE
Q 024226 128 NVITRNPNKELVFYYDPITVTVTSGDNDDVNVG-AGSFPSFRHGTKNTTELKASIKGNGQELDDASASKVKSQLKSKSGL 206 (270)
Q Consensus 128 ~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg-~~~vP~F~q~~~ntt~v~~~l~~~~~~l~~~~~~~L~~d~~~~G~v 206 (270)
+|+++|||. ++++|++++++++ |+|..+| ....++|.|++++++.+.+.+..+...+ .+.|.+++ + |..
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~---~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~-~~~ 70 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVY---YNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-A-GRV 70 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEE---ESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-H-TTS
T ss_pred CEEEECCCc-eeEEEeCEEEEEE---ECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-c-ccc
Confidence 689999999 9999999999999 8999999 6779999999999999998887765433 45555554 3 577
Q ss_pred eEEEEEEEEEEEEE-eEEEeCceEEEEEcC
Q 024226 207 PLKIKLETKVKVKM-GAVKSPKVRIRVTCE 235 (270)
Q Consensus 207 ~l~v~~~~~vr~kv-G~~~s~~~~v~V~C~ 235 (270)
.+++.+++++++++ +.....++.+.++|+
T Consensus 71 ~~~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 71 PFDVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp CEEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred ceEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 88888888888884 433334566666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.35 E-value=7.8e-06 Score=63.18 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=64.5
Q ss_pred eeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccCC-ceeecCCceEEEEEEEEEcccccChHHHHHHHH
Q 024226 120 TLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSFP-SFRHGTKNTTELKASIKGNGQELDDASASKVKS 198 (270)
Q Consensus 120 ~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~vP-~F~q~~~ntt~v~~~l~~~~~~l~~~~~~~L~~ 198 (270)
.++.++.+++.+.|||. +.+.|+.++.+++ |+|..+|++..+ ....++++++.+++.+... ... ...+..
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~---~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~----~~~~~~ 82 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLY---LNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL----AEALIW 82 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEE---ECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH----hHHHHH
Confidence 47799999999999999 7999999999999 899999999986 7999999999999888773 222 234445
Q ss_pred hhhcCCcEeEEEE
Q 024226 199 QLKSKSGLPLKIK 211 (270)
Q Consensus 199 d~~~~G~v~l~v~ 211 (270)
++.++..++.+++
T Consensus 83 ~l~~~~~~~y~l~ 95 (100)
T smart00769 83 HIANGEEIPYRLD 95 (100)
T ss_pred hhccCCCccEEEE
Confidence 5554333444433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.63 E-value=0.001 Score=59.02 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=57.0
Q ss_pred CCCCEEEEEEEEEeeeecCCC-ceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccCCc-eeecCCceE
Q 024226 98 PHRPSFSVSSLKIQTLNLTSS-QTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSFPS-FRHGTKNTT 175 (270)
Q Consensus 98 P~~P~f~V~s~~l~~fnls~~-s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~vP~-F~q~~~ntt 175 (270)
||.-.++-.++......++.. +++..++.-.|.+.|||. ..+.-..+++++. |....+|.+.... ...++++..
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~---~~~~VVG~~~~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVL---YMKTVVGKGKNSNITVIGPRSSK 173 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEE---EEEeEEeeeEecceEEecccCCc
Confidence 665555544444444333332 367888888999999998 6899999999999 7788999887653 366666666
Q ss_pred EEEEEEE
Q 024226 176 ELKASIK 182 (270)
Q Consensus 176 ~v~~~l~ 182 (270)
.+...+.
T Consensus 174 q~~~tV~ 180 (238)
T PF07092_consen 174 QVNYTVK 180 (238)
T ss_pred eEEEEee
Confidence 5655544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.60 E-value=0.00032 Score=66.00 Aligned_cols=78 Identities=15% Similarity=0.311 Sum_probs=47.6
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHheeeEEEecCCCCEEEEEEEEEeeee--cCCCceeeEEEEEEEEEEcCCCeeeE
Q 024226 63 RRSCCCSCCLWVTITLIILILLVAIAGGILYVLYRPHRPSFSVSSLKIQTLN--LTSSQTLVTNINLNVITRNPNKELVF 140 (270)
Q Consensus 63 ~r~~cc~c~~~~~~~ll~lill~gia~li~~Lv~rP~~P~f~V~s~~l~~fn--ls~~s~l~~~l~l~l~~~NPN~ki~i 140 (270)
.|++|.+..+|+++.|++|+++.++++++| ..-+| ++++.|..+. |. +.-..-|++++.+.|||- +.|
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~-AttKp------L~~v~v~~I~NVla--S~qELmfdl~V~A~NPn~-~~V 364 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLVIGFAIGFVF-ATTKP------LTDVQVVSIQNVLA--SEQELMFDLTVEAFNPNW-FTV 364 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHhhh-hcCcc------cccceEEEeeeeee--ccceEEEeeEEEEECCCe-EEE
Confidence 355666555555444444444444444443 34455 3333333332 11 235678999999999998 789
Q ss_pred EEcceEEEEE
Q 024226 141 YYDPITVTVT 150 (270)
Q Consensus 141 ~Y~~~~v~v~ 150 (270)
.-++.++++|
T Consensus 365 ~I~d~dldIF 374 (387)
T PF12751_consen 365 TIDDMDLDIF 374 (387)
T ss_pred EeccceeeeE
Confidence 9999999998
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.97 E-value=0.02 Score=47.52 Aligned_cols=105 Identities=11% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCEEEEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeeccc-CCceeecCCceEEE
Q 024226 99 HRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGS-FPSFRHGTKNTTEL 177 (270)
Q Consensus 99 ~~P~f~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~-vP~F~q~~~ntt~v 177 (270)
+.|...--.+..-.... ...++-.++.++|||. +.|--.+++.+++ -+|..+|++. +.++..++++...+
T Consensus 31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipVtgl~y~vy---mN~Iki~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPVTGLQYAVY---MNDIKIGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceeeeceEEEEE---EcceEeeccccccceEECCCCeEEE
Confidence 45655555555444322 3478889999999999 6888889999998 7999999997 56799999999999
Q ss_pred EEEEEEcccccChHHHHHHHHhhhcCCcEeEEEEEEEEE
Q 024226 178 KASIKGNGQELDDASASKVKSQLKSKSGLPLKIKLETKV 216 (270)
Q Consensus 178 ~~~l~~~~~~l~~~~~~~L~~d~~~~G~v~l~v~~~~~v 216 (270)
.+.+..+.-.+. +.+...+.++..-++++++...+
T Consensus 102 dv~l~~d~~~~k----e~w~~hi~ngErs~Ir~~i~~~v 136 (161)
T COG5608 102 DVPLRLDNSKIK----EWWVTHIENGERSTIRVRIKGVV 136 (161)
T ss_pred EEEEEEehHHHH----HHHHHHhhccCcccEEEEEEEEE
Confidence 988877643332 33444555432224444444333
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.15 E-value=0.067 Score=47.23 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=60.8
Q ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHHheeeEEEecC--CCCEEEEEEEEEee-------eecCCC---ceeeEEEE
Q 024226 59 RHRYRRSCCCSCCLWVTITLIILILLVAIAGGILYVLYRP--HRPSFSVSSLKIQT-------LNLTSS---QTLVTNIN 126 (270)
Q Consensus 59 rr~~~r~~cc~c~~~~~~~ll~lill~gia~li~~Lv~rP--~~P~f~V~s~~l~~-------fnls~~---s~l~~~l~ 126 (270)
+||+++.+||+|++-++++|.++++ +++++++=-=+| +.-.++|+++.+.. +|++-. +.-|.|.
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~---~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTIL---VLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHH---heeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 3444566677777776666664433 334455555777 34567777777642 332211 0124454
Q ss_pred EEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccCCceeecCCceEE
Q 024226 127 LNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSFPSFRHGTKNTTE 176 (270)
Q Consensus 127 l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~vP~F~q~~~ntt~ 176 (270)
+.+..+ |..+.++|++..+.- ..+..+.++++.+...+.+.
T Consensus 107 ~~~~Y~--~~~~~v~Y~g~~vG~-------a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 107 ASFKYS--NTTTTIYYGGTVVGE-------ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred eeEEEc--CeEEEEEECCEEEEE-------EEcCCcccCCCCeEEEEEEE
Confidence 455554 445789998755433 35666777777777777774
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=87.81 E-value=1 Score=36.17 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHheeeEEEe--cCCCCEEEEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCe
Q 024226 73 WVTITLIILILLVAIAGGILYVLY--RPHRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKE 137 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li~~Lv~--rP~~P~f~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~k 137 (270)
|+...| .++++++++++++|..+ ++++|.+++......+. ....+-+-++++|--.+
T Consensus 5 Wvt~~I-s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 5 WVTFGI-STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCCc
Confidence 444333 33455666677776655 67889999888776552 33457778888887765
No 9
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=79.80 E-value=27 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=15.3
Q ss_pred CCCeeeeccc--CCceeecCCceEEEEEEEEEc
Q 024226 154 NDDVNVGAGS--FPSFRHGTKNTTELKASIKGN 184 (270)
Q Consensus 154 Y~g~~Lg~~~--vP~F~q~~~ntt~v~~~l~~~ 184 (270)
|++..+|.-. +|+ +...+..+...+...
T Consensus 72 ~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 72 YDGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred CCCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 7778888654 555 333344455555433
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=75.80 E-value=0.77 Score=30.79 Aligned_cols=8 Identities=63% Similarity=2.348 Sum_probs=4.0
Q ss_pred cccchhHH
Q 024226 65 SCCCSCCL 72 (270)
Q Consensus 65 ~~cc~c~~ 72 (270)
+||||||+
T Consensus 25 gcccccc~ 32 (56)
T TIGR03602 25 GCCCCCCC 32 (56)
T ss_pred CeEEEecc
Confidence 45555543
No 11
>PRK05529 cell division protein FtsQ; Provisional
Probab=73.82 E-value=6.7 Score=35.31 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.7
Q ss_pred CCEEEEEEEEEeeee
Q 024226 100 RPSFSVSSLKIQTLN 114 (270)
Q Consensus 100 ~P~f~V~s~~l~~fn 114 (270)
.|-|.|+++.|++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 489999999998754
No 12
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=70.34 E-value=1.4 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=0.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHheeeEEEec
Q 024226 64 RSCCCSCCLWVTITLIILILLVAIAGGILYVLYR 97 (270)
Q Consensus 64 r~~cc~c~~~~~~~ll~lill~gia~li~~Lv~r 97 (270)
|+.|.+++.|.-+.+|+.+||+|-++. .|++|.
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~T-aYfv~~ 57 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAVT-AYFVFQ 57 (114)
T ss_dssp ----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHHH-HHHHHH
Confidence 345778888887777777777777654 556775
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=67.41 E-value=32 Score=29.62 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=20.8
Q ss_pred cCCCCEEEEEEEEEeeeecCCCceeeEEEEE
Q 024226 97 RPHRPSFSVSSLKIQTLNLTSSQTLVTNINL 127 (270)
Q Consensus 97 rP~~P~f~V~s~~l~~fnls~~s~l~~~l~l 127 (270)
.++.|.|.+++++...|+.+.. +++.+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G~--l~y~l~a 65 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEGA--LSYKLVA 65 (192)
T ss_pred CCCCCCEEEeccEEEEECCCCC--EEEEEEe
Confidence 4678999999999999876542 4444443
No 14
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=63.63 E-value=35 Score=28.68 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=33.7
Q ss_pred EEEEEEEEcCCCeeeEEEcceEEEEEEecCCC-eeeecccCCceeecCCceEEEEEE-E--EEcccccChHHHHHHHHh
Q 024226 125 INLNVITRNPNKELVFYYDPITVTVTSGDNDD-VNVGAGSFPSFRHGTKNTTELKAS-I--KGNGQELDDASASKVKSQ 199 (270)
Q Consensus 125 l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g-~~Lg~~~vP~F~q~~~ntt~v~~~-l--~~~~~~l~~~~~~~L~~d 199 (270)
+.+.+.+..-+..+.+.|+.+-=+++ -+| ..+..|.+ ++. + ++.+. + +=++..+.++++.+|++.
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlF---rEG~gVVveG~~----~~~-g--~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLF---REGQGVVVQGTL----EKG-N--HVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccc---cCCCeEEEEEEE----CCC-C--EEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 44555555556667777776655555 333 23344433 211 1 22221 2 223456788888777654
No 15
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=61.84 E-value=11 Score=24.93 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHheeeEEEecC
Q 024226 76 ITLIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 76 ~~ll~lill~gia~li~~Lv~rP 98 (270)
.+|++..+++++.+..+|..|-|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 44556678899999999999987
No 16
>CHL00020 psbN photosystem II protein N
Probab=59.55 E-value=13 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHheeeEEEecC
Q 024226 75 TITLIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 75 ~~~ll~lill~gia~li~~Lv~rP 98 (270)
+.+|++..+++++.+.-+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 344556678899999999999987
No 17
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=59.36 E-value=14 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.5
Q ss_pred HHHHHHheeeEEEecCC
Q 024226 83 LLVAIAGGILYVLYRPH 99 (270)
Q Consensus 83 ll~gia~li~~Lv~rP~ 99 (270)
.+++.++.+.|++++|+
T Consensus 12 avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 12 AVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHhhhceeEEEEECCC
Confidence 35666778899999998
No 18
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=57.62 E-value=16 Score=31.33 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHheeeEEEecCCCC
Q 024226 77 TLIILILLVAIAGGILYVLYRPHRP 101 (270)
Q Consensus 77 ~ll~lill~gia~li~~Lv~rP~~P 101 (270)
++++|.+++++++.+++.+++|..|
T Consensus 7 F~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 7 FLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHhheeeEEEccCCC
Confidence 3334555666777788889999866
No 19
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=57.32 E-value=31 Score=28.02 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=37.4
Q ss_pred HheeeEEEecC--CCCEEEEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeec
Q 024226 88 AGGILYVLYRP--HRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGA 161 (270)
Q Consensus 88 a~li~~Lv~rP--~~P~f~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~ 161 (270)
+.+++|.++.. +.+..++.+.+- ++. +-.+.+..+++|-.++ .+..=.+++.+. .++...++
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~~-~i~~c~i~~~l~---~~~~~~~n 96 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY------SESFYVDGTVTNTGKF-TIKKCKITVKLY---NDKQVSGN 96 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee------ccEEEEEEEEEECCCC-EeeEEEEEEEEE---eCCCccCc
Confidence 44445555544 446666655543 332 3457778999998874 677767788887 54434443
No 20
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.52 E-value=23 Score=29.54 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.7
Q ss_pred EEEcceEEEEE
Q 024226 140 FYYDPITVTVT 150 (270)
Q Consensus 140 i~Y~~~~v~v~ 150 (270)
-+|=..++++.
T Consensus 78 ~rylkv~i~L~ 88 (162)
T PRK07021 78 DRVLYVGLTLR 88 (162)
T ss_pred ceEEEEEEEEE
Confidence 56655666665
No 21
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=56.18 E-value=65 Score=25.99 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=37.2
Q ss_pred EEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccC
Q 024226 104 SVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSF 164 (270)
Q Consensus 104 ~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~v 164 (270)
.++.+++++..+.....-.-.+.++.+++|...+ ...|-.++++++- .+|..+.+-.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~-~~~~P~l~l~L~D--~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRADF-PQALPALELSLLD--AQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCC-cccCceEEEEEEC--CCCCEEEEEEE
Confidence 4445554443332211234678888999999885 7888888998882 56767765444
No 22
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=55.87 E-value=26 Score=29.45 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHheeeEEEec
Q 024226 71 CLWVTITLIILILLVAIAGGILYVLYR 97 (270)
Q Consensus 71 ~~~~~~~ll~lill~gia~li~~Lv~r 97 (270)
..|+++++++.++++|+++.++|+..+
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 677777777777888888888887763
No 23
>PHA02819 hypothetical protein; Provisional
Probab=54.76 E-value=6.8 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHheeeE
Q 024226 69 SCCLWVTITLIILILLVAIAGGILY 93 (270)
Q Consensus 69 ~c~~~~~~~ll~lill~gia~li~~ 93 (270)
|+..|.+.+++++++++++...++|
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766665544444444444444
No 24
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=54.72 E-value=21 Score=29.45 Aligned_cols=21 Identities=52% Similarity=0.662 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHheeeEEEecCC
Q 024226 77 TLIILILLVAIAGGILYVLYRPH 99 (270)
Q Consensus 77 ~ll~lill~gia~li~~Lv~rP~ 99 (270)
++-+|++++|++..++ -|-|+
T Consensus 44 ~lG~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 44 LLGILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred HHHHHHHHHhhHhhee--ecccc
Confidence 3334556667765554 34565
No 25
>PHA03054 IMV membrane protein; Provisional
Probab=54.58 E-value=6.7 Score=28.37 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHheeeE
Q 024226 69 SCCLWVTITLIILILLVAIAGGILY 93 (270)
Q Consensus 69 ~c~~~~~~~ll~lill~gia~li~~ 93 (270)
|+..|.+.+++++++++++...++|
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566766665544444444444444
No 26
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=54.23 E-value=1.1e+02 Score=24.15 Aligned_cols=67 Identities=9% Similarity=0.171 Sum_probs=38.9
Q ss_pred eeecccCCceeecCCceE-EEEEEEEEcccccChHHHHHHHHhhhcCCcEeEEEEEEEEEEEEEeEEEeCceEE
Q 024226 158 NVGAGSFPSFRHGTKNTT-ELKASIKGNGQELDDASASKVKSQLKSKSGLPLKIKLETKVKVKMGAVKSPKVRI 230 (270)
Q Consensus 158 ~Lg~~~vP~F~q~~~ntt-~v~~~l~~~~~~l~~~~~~~L~~d~~~~G~v~l~v~~~~~vr~kvG~~~s~~~~v 230 (270)
+++...+|+.......+. .....+.. .+.+...++.+++-....+.+.++.+ .+.++|.++...+.+
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i----~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~ 69 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTI----TDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPF 69 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEe----cCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEee
Confidence 567788998888222222 22333332 24455677777765545566655555 578888886544444
No 27
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=53.56 E-value=25 Score=28.75 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=5.0
Q ss_pred HHHHHHHhhh
Q 024226 192 SASKVKSQLK 201 (270)
Q Consensus 192 ~~~~L~~d~~ 201 (270)
....|++|+.
T Consensus 110 G~~~Lr~el~ 119 (142)
T PRK07718 110 GLEALKEQLK 119 (142)
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.39 E-value=11 Score=32.28 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHheeeEEEecCCCCEEEEEEEEE
Q 024226 72 LWVTITLIILILLVAIAGGILYVLYRPHRPSFSVSSLKI 110 (270)
Q Consensus 72 ~~~~~~ll~lill~gia~li~~Lv~rP~~P~f~V~s~~l 110 (270)
=|++.+|++|. .+++++++.+++.|+.|..++.+.+=
T Consensus 12 Kw~f~iLLAln--~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 12 KWLFFILLALN--TLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHH--HHHHHHhheeeccCCCCCchhhccCc
Confidence 34444444333 33345666678899997777766654
No 29
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=53.30 E-value=9.9 Score=24.88 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHheeeEEEecC
Q 024226 76 ITLIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 76 ~~ll~lill~gia~li~~Lv~rP 98 (270)
+.+.+..+++++.+..+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 34455667889999999999976
No 30
>PHA02844 putative transmembrane protein; Provisional
Probab=53.06 E-value=7.9 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHheeeEE
Q 024226 69 SCCLWVTITLIILILLVAIAGGILYV 94 (270)
Q Consensus 69 ~c~~~~~~~ll~lill~gia~li~~L 94 (270)
|+..|...+|+++++++++...++||
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555444444445555554
No 31
>PHA02650 hypothetical protein; Provisional
Probab=52.69 E-value=7.4 Score=28.77 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHheeeEE
Q 024226 69 SCCLWVTITLIILILLVAIAGGILYV 94 (270)
Q Consensus 69 ~c~~~~~~~ll~lill~gia~li~~L 94 (270)
|+..|.+.+++++++++++...++||
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667666665444444444444554
No 32
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=50.47 E-value=10 Score=33.45 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHH
Q 024226 70 CCLWVTITLIILI 82 (270)
Q Consensus 70 c~~~~~~~ll~li 82 (270)
.+-++++|+++||
T Consensus 15 iLNiaI~IV~lLI 27 (217)
T PF07423_consen 15 ILNIAIGIVSLLI 27 (217)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444333
No 33
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=49.90 E-value=4.3 Score=23.44 Aligned_cols=20 Identities=40% Similarity=0.555 Sum_probs=12.6
Q ss_pred HHHHHHHHheeeEEEecCCC
Q 024226 81 LILLVAIAGGILYVLYRPHR 100 (270)
Q Consensus 81 lill~gia~li~~Lv~rP~~ 100 (270)
+++.+++.+.++|.+++|++
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34455566666666778864
No 34
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=48.90 E-value=18 Score=31.97 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=11.0
Q ss_pred HHHHHheeeEEEecCCCCEE
Q 024226 84 LVAIAGGILYVLYRPHRPSF 103 (270)
Q Consensus 84 l~gia~li~~Lv~rP~~P~f 103 (270)
++|..++.+|-++|||....
T Consensus 171 l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HhhcceEEEEEEeccccccc
Confidence 34444444444778876543
No 35
>PHA02975 hypothetical protein; Provisional
Probab=48.68 E-value=9.4 Score=27.46 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHheeeE
Q 024226 69 SCCLWVTITLIILILLVAIAGGILY 93 (270)
Q Consensus 69 ~c~~~~~~~ll~lill~gia~li~~ 93 (270)
++..|.+.++++++++.++....+|
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLY 64 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665544444334333343
No 36
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=47.83 E-value=11 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHheeeEEEecC
Q 024226 73 WVTITLIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li~~Lv~rP 98 (270)
+++.+|++|++-++++.+++||+++-
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 34455556677778888888888764
No 37
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.19 E-value=15 Score=29.50 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 024226 71 CLWVTITLIILIL 83 (270)
Q Consensus 71 ~~~~~~~ll~lil 83 (270)
.+|+++|+++||+
T Consensus 3 ~l~~iii~~i~l~ 15 (130)
T PF12273_consen 3 VLFAIIIVAILLF 15 (130)
T ss_pred eeHHHHHHHHHHH
Confidence 4455554444433
No 38
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.32 E-value=7.7 Score=30.78 Aligned_cols=11 Identities=18% Similarity=0.815 Sum_probs=7.2
Q ss_pred eeeEEEecCCC
Q 024226 90 GILYVLYRPHR 100 (270)
Q Consensus 90 li~~Lv~rP~~ 100 (270)
+++|+++||+.
T Consensus 14 ~i~yf~iRPQk 24 (113)
T PRK06531 14 GLIFFMQRQQK 24 (113)
T ss_pred HHHHheechHH
Confidence 34566799954
No 39
>PF14927 Neurensin: Neurensin
Probab=45.23 E-value=32 Score=28.36 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=6.2
Q ss_pred HHHHHHHheeeE
Q 024226 82 ILLVAIAGGILY 93 (270)
Q Consensus 82 ill~gia~li~~ 93 (270)
++++|++++++-
T Consensus 54 ~Ll~Gi~~l~vg 65 (140)
T PF14927_consen 54 LLLLGIVALTVG 65 (140)
T ss_pred HHHHHHHHHHhh
Confidence 345566555543
No 40
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.03 E-value=10 Score=35.18 Aligned_cols=8 Identities=0% Similarity=-0.362 Sum_probs=3.2
Q ss_pred CcccchhH
Q 024226 64 RSCCCSCC 71 (270)
Q Consensus 64 r~~cc~c~ 71 (270)
..|||+||
T Consensus 270 ~k~i~ii~ 277 (297)
T KOG0810|consen 270 WKIIIIII 277 (297)
T ss_pred ceeeeehH
Confidence 34444333
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.90 E-value=20 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=15.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHh
Q 024226 64 RSCCCSCCLWVTITLIILILLVAIAG 89 (270)
Q Consensus 64 r~~cc~c~~~~~~~ll~lill~gia~ 89 (270)
+..|-++|+.++++++++++++|++.
T Consensus 134 ~~~c~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 134 NDACRRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666777664
No 42
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=43.02 E-value=40 Score=30.40 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=17.7
Q ss_pred eeeEEEEEEEEEEcCCCeeeEEE
Q 024226 120 TLVTNINLNVITRNPNKELVFYY 142 (270)
Q Consensus 120 ~l~~~l~l~l~~~NPN~ki~i~Y 142 (270)
.+...=++++.++|||.++.=++
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 45677789999999999865443
No 43
>PRK01844 hypothetical protein; Provisional
Probab=42.38 E-value=22 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHheee
Q 024226 73 WVTITLIILILLVAIAGGIL 92 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li~ 92 (270)
|+..+|.++.+++|+++..|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445566677766554
No 44
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=41.58 E-value=26 Score=31.27 Aligned_cols=15 Identities=27% Similarity=1.021 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHH
Q 024226 70 CCLWVTITLIILILL 84 (270)
Q Consensus 70 c~~~~~~~ll~lill 84 (270)
|+.|+++++++++|+
T Consensus 228 ~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788876655444443
No 45
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=40.80 E-value=3.6 Score=24.00 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=12.2
Q ss_pred HHHHHHHHheeeEEEecCCC
Q 024226 81 LILLVAIAGGILYVLYRPHR 100 (270)
Q Consensus 81 lill~gia~li~~Lv~rP~~ 100 (270)
+++.+++.+.++|.++||++
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34455556666666778864
No 46
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.96 E-value=66 Score=26.96 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=6.8
Q ss_pred EEEcceEEEEE
Q 024226 140 FYYDPITVTVT 150 (270)
Q Consensus 140 i~Y~~~~v~v~ 150 (270)
.+|=...+++.
T Consensus 86 ~ryLkv~i~L~ 96 (166)
T PRK12785 86 VQYLKLKVVLE 96 (166)
T ss_pred ceEEEEEEEEE
Confidence 46656666666
No 47
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.54 E-value=22 Score=29.73 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHheeeEEEecCCCCEE
Q 024226 83 LLVAIAGGILYVLYRPHRPSF 103 (270)
Q Consensus 83 ll~gia~li~~Lv~rP~~P~f 103 (270)
+|+++++++||+.+|++.=.|
T Consensus 62 ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHhheeEEEecccCcc
Confidence 345677778888889876443
No 48
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=38.52 E-value=47 Score=35.65 Aligned_cols=8 Identities=38% Similarity=0.841 Sum_probs=4.7
Q ss_pred CCCCCCCc
Q 024226 50 RPAYRPQP 57 (270)
Q Consensus 50 ~p~~r~~~ 57 (270)
+||+||--
T Consensus 1043 e~P~Rpdt 1050 (1105)
T KOG1326|consen 1043 EPPNRPDT 1050 (1105)
T ss_pred CCCCCCCc
Confidence 56666643
No 49
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=37.21 E-value=75 Score=25.49 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=3.9
Q ss_pred EcCCCeeeEEE
Q 024226 132 RNPNKELVFYY 142 (270)
Q Consensus 132 ~NPN~ki~i~Y 142 (270)
...++.+.+.|
T Consensus 78 ~D~~~~i~V~Y 88 (131)
T PF03100_consen 78 TDGGKEIPVVY 88 (131)
T ss_dssp E-SS-EEEEEE
T ss_pred EECCcEEEEEE
Confidence 33344444444
No 50
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.12 E-value=28 Score=25.18 Aligned_cols=19 Identities=47% Similarity=1.024 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhee
Q 024226 73 WVTITLIILILLVAIAGGI 91 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li 91 (270)
|+..+++.+.+++|++++.
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5545555667777777763
No 51
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=36.96 E-value=12 Score=22.36 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=12.3
Q ss_pred HHHHHHHHheeeEEEecCCC
Q 024226 81 LILLVAIAGGILYVLYRPHR 100 (270)
Q Consensus 81 lill~gia~li~~Lv~rP~~ 100 (270)
.++.+|+.+.++|.++||++
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34455556666666778864
No 52
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=36.57 E-value=32 Score=30.63 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.3
Q ss_pred HHHHHheeeEEEecC
Q 024226 84 LVAIAGGILYVLYRP 98 (270)
Q Consensus 84 l~gia~li~~Lv~rP 98 (270)
+..+++++.|+.|||
T Consensus 234 lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 234 LSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHHhheeeCc
Confidence 344556678888887
No 53
>PHA02692 hypothetical protein; Provisional
Probab=36.19 E-value=17 Score=26.30 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 024226 69 SCCLWVTITLI 79 (270)
Q Consensus 69 ~c~~~~~~~ll 79 (270)
|+..|...+|+
T Consensus 41 ~~~~~~~~ii~ 51 (70)
T PHA02692 41 KGVPWTTVFLI 51 (70)
T ss_pred CCcchHHHHHH
Confidence 35566655554
No 54
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=34.79 E-value=85 Score=26.29 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCeeeEEEcceEEEEEEecCCC-eeeecccCCceeecCCceEEEEEE-E--EEcccccChHHHHHHHHh
Q 024226 135 NKELVFYYDPITVTVTSGDNDD-VNVGAGSFPSFRHGTKNTTELKAS-I--KGNGQELDDASASKVKSQ 199 (270)
Q Consensus 135 N~ki~i~Y~~~~v~v~~~~Y~g-~~Lg~~~vP~F~q~~~ntt~v~~~-l--~~~~~~l~~~~~~~L~~d 199 (270)
+..+.+.|..+-=++| -+| ..+.+|.+. + + ++.+. + +=++..+.++++++|++.
T Consensus 82 ~~~v~V~Y~GilPDlF---rEGqgVVaeG~~~----~--g--~F~A~~vLAKHde~YmP~Ev~~al~~~ 139 (155)
T PRK13159 82 NAATQVEYTGILPDLF---RDNQSVIANGRMQ----G--G--RFVANEVLAKHDETYMPKELKDAMAEG 139 (155)
T ss_pred CcEEEEEEccCCCccc---cCCCeEEEEEEEc----C--C--EEEEeEEEecCCCcCCCHHHHHHHHhc
Confidence 5557778876555555 233 234455432 1 1 23222 2 223346778877777654
No 55
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=34.58 E-value=20 Score=37.46 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=5.1
Q ss_pred CCCCCCCCC
Q 024226 2 TDRVYPSAK 10 (270)
Q Consensus 2 ~~~~~p~~~ 10 (270)
++-+|++.+
T Consensus 21 a~l~~~std 29 (865)
T KOG4331|consen 21 APLGYSSTD 29 (865)
T ss_pred cccCCCCCC
Confidence 345666666
No 56
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=34.19 E-value=33 Score=19.96 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 024226 75 TITLIILILL 84 (270)
Q Consensus 75 ~~~ll~lill 84 (270)
+.+|++|+++
T Consensus 11 ivVLFILLII 20 (26)
T TIGR01732 11 IVVLFILLVI 20 (26)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 57
>PRK00523 hypothetical protein; Provisional
Probab=34.10 E-value=35 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHheee
Q 024226 73 WVTITLIILILLVAIAGGIL 92 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li~ 92 (270)
|+..+|.++++++|+++..|
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444456666665544
No 58
>PRK14762 membrane protein; Provisional
Probab=33.78 E-value=59 Score=18.77 Aligned_cols=12 Identities=17% Similarity=0.769 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHH
Q 024226 70 CCLWVTITLIIL 81 (270)
Q Consensus 70 c~~~~~~~ll~l 81 (270)
.+.|.+.+++++
T Consensus 3 i~lw~i~iifli 14 (27)
T PRK14762 3 IILWAVLIIFLI 14 (27)
T ss_pred eHHHHHHHHHHH
Confidence 567877766543
No 59
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=33.66 E-value=46 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHheeeEEEecCC
Q 024226 85 VAIAGGILYVLYRPH 99 (270)
Q Consensus 85 ~gia~li~~Lv~rP~ 99 (270)
+.++++++|+.-||+
T Consensus 42 ~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 42 FLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHhheeEEeccCC
Confidence 334556788888874
No 60
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=1e+02 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.6
Q ss_pred EEEEEcCCCeeeEEEcceEEEEE
Q 024226 128 NVITRNPNKELVFYYDPITVTVT 150 (270)
Q Consensus 128 ~l~~~NPN~ki~i~Y~~~~v~v~ 150 (270)
.+.+.--|.++.+.|..+-=+++
T Consensus 75 ~F~vtD~~~~v~V~Y~GiLPDLF 97 (153)
T COG2332 75 SFVVTDGNKSVTVSYEGILPDLF 97 (153)
T ss_pred EEEEecCCceEEEEEeccCchhh
Confidence 33333556678888877666666
No 61
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=33.47 E-value=1.8e+02 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=12.1
Q ss_pred EEEEcCCCeeeEEEcceEEEEE
Q 024226 129 VITRNPNKELVFYYDPITVTVT 150 (270)
Q Consensus 129 l~~~NPN~ki~i~Y~~~~v~v~ 150 (270)
+.++|-... .+..+++.+.+.
T Consensus 56 v~i~h~gGd-~l~~~~l~i~v~ 76 (80)
T PF07790_consen 56 VTITHEGGD-PLDVDDLKIVVD 76 (80)
T ss_pred EEEEEcCCC-CcccceEEEEEe
Confidence 566665553 455666666555
No 62
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=33.20 E-value=35 Score=32.73 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhe
Q 024226 77 TLIILILLVAIAGG 90 (270)
Q Consensus 77 ~ll~lill~gia~l 90 (270)
+||++.+++|.+++
T Consensus 312 ~lL~ig~~~gFv~A 325 (387)
T PF12751_consen 312 LLLVIGFAIGFVFA 325 (387)
T ss_pred HHHHHHHHHHhhhh
Confidence 34444444554443
No 63
>PRK11901 hypothetical protein; Reviewed
Probab=33.01 E-value=58 Score=30.56 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 024226 75 TITLIILILLVAIAG 89 (270)
Q Consensus 75 ~~~ll~lill~gia~ 89 (270)
+.||++|+||+||--
T Consensus 42 iGilVLlLLIi~IgS 56 (327)
T PRK11901 42 IGILVLLLLIIAIGS 56 (327)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555555555543
No 64
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.89 E-value=1.5e+02 Score=30.50 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 024226 71 CLWVTIT 77 (270)
Q Consensus 71 ~~~~~~~ 77 (270)
..|++++
T Consensus 325 ~~~~~~l 331 (656)
T PRK06975 325 ALWFVVV 331 (656)
T ss_pred HHHHHHH
Confidence 4444443
No 65
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=32.54 E-value=26 Score=29.46 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=10.7
Q ss_pred HHHHHHheeeEEEecC
Q 024226 83 LLVAIAGGILYVLYRP 98 (270)
Q Consensus 83 ll~gia~li~~Lv~rP 98 (270)
+++|+++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3344444788888998
No 66
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=31.82 E-value=55 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHheeeE
Q 024226 66 CCCSCCLWVTITLIILILLVAIAGGILY 93 (270)
Q Consensus 66 ~cc~c~~~~~~~ll~lill~gia~li~~ 93 (270)
|||.|+.|++.+|-++ ..+..+|.|
T Consensus 100 ~cc~~lr~vcl~Lniv---g~vt~~VvW 124 (192)
T PTZ00201 100 YGCTIHRWVCLALNIV---GAVTLGVVW 124 (192)
T ss_pred HccchHHHHHHHHHHH---HHHHHheee
Confidence 5666777876655433 333444444
No 67
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=31.01 E-value=33 Score=24.96 Aligned_cols=6 Identities=17% Similarity=0.872 Sum_probs=2.3
Q ss_pred HHHHHH
Q 024226 71 CLWVTI 76 (270)
Q Consensus 71 ~~~~~~ 76 (270)
..|.+.
T Consensus 46 ~~~~~~ 51 (72)
T PF12575_consen 46 FNWIIL 51 (72)
T ss_pred chHHHH
Confidence 444333
No 68
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=30.56 E-value=50 Score=19.27 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHheee
Q 024226 73 WVTITLIILILLVAIAGGIL 92 (270)
Q Consensus 73 ~~~~~ll~lill~gia~li~ 92 (270)
|+..+...+.+++++.++++
T Consensus 7 w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 54444444455555655554
No 69
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=30.10 E-value=91 Score=24.52 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=17.5
Q ss_pred eEEEEEEEEEEcCCCeeeEEEcceEE
Q 024226 122 VTNINLNVITRNPNKELVFYYDPITV 147 (270)
Q Consensus 122 ~~~l~l~l~~~NPN~ki~i~Y~~~~v 147 (270)
..++..++.+.||.. +++.....++
T Consensus 99 g~~~~~~~~l~NPS~-~ti~lG~v~~ 123 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDLGNVTL 123 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEeccEEE
Confidence 467778888888887 6666555544
No 70
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=29.59 E-value=19 Score=33.45 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHheeeEEEec
Q 024226 77 TLIILILLVAIAGGILYVLYR 97 (270)
Q Consensus 77 ~ll~lill~gia~li~~Lv~r 97 (270)
..+++|+++.++.+|+||++|
T Consensus 260 aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555567778888875
No 71
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.47 E-value=40 Score=19.23 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024226 77 TLIILILLV 85 (270)
Q Consensus 77 ~ll~lill~ 85 (270)
+|++|++++
T Consensus 11 VLFILLiIv 19 (24)
T PF09680_consen 11 VLFILLIIV 19 (24)
T ss_pred HHHHHHHHh
Confidence 333333333
No 72
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=28.76 E-value=58 Score=20.86 Aligned_cols=24 Identities=33% Similarity=0.827 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHheeeEEEecCC
Q 024226 71 CLWVTITLIILILLVAIAGGILYVLYRPH 99 (270)
Q Consensus 71 ~~~~~~~ll~lill~gia~li~~Lv~rP~ 99 (270)
..|++.++ ++-+++.++|++++++
T Consensus 23 ~~W~~~i~-----~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLIVIL-----FFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHHHHH-----HHHHHHHhheEEEeCC
Confidence 56665543 4566777888888753
No 73
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=28.69 E-value=22 Score=36.97 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHheeeEEEecCCCCEEE
Q 024226 70 CCLWVTITLIILILLVAIAGGILYVLYRPHRPSFS 104 (270)
Q Consensus 70 c~~~~~~~ll~lill~gia~li~~Lv~rP~~P~f~ 104 (270)
..+|++.++++++++.+.+++++|+.+.|+.|.+.
T Consensus 4 ~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 4 LIKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 34555666666666666666777777888888764
No 74
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.69 E-value=71 Score=24.52 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.6
Q ss_pred eeeEEE-ec
Q 024226 90 GILYVL-YR 97 (270)
Q Consensus 90 li~~Lv-~r 97 (270)
+|.|++ +|
T Consensus 80 ~IyYFVILR 88 (101)
T PF06024_consen 80 AIYYFVILR 88 (101)
T ss_pred hheEEEEEe
Confidence 344444 44
No 75
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=76 Score=25.12 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.4
Q ss_pred eEEEEEEEEEEcCCCe
Q 024226 122 VTNINLNVITRNPNKE 137 (270)
Q Consensus 122 ~~~l~l~l~~~NPN~k 137 (270)
+...+.++++.|-|.+
T Consensus 51 ~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 51 SPGYEYTITAYNKNGK 66 (113)
T ss_pred CccceeeehhhccCCc
Confidence 3346678888888875
No 76
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.29 E-value=88 Score=26.11 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.6
Q ss_pred HHHHHHHheeeEEEecC
Q 024226 82 ILLVAIAGGILYVLYRP 98 (270)
Q Consensus 82 ill~gia~li~~Lv~rP 98 (270)
+||+..+++++|-.=|.
T Consensus 20 ~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 20 LLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHhcceEEEeecc
Confidence 34445556677765554
No 77
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=26.16 E-value=22 Score=21.93 Aligned_cols=12 Identities=0% Similarity=0.149 Sum_probs=5.9
Q ss_pred HHHHHHheeeEE
Q 024226 83 LLVAIAGGILYV 94 (270)
Q Consensus 83 ll~gia~li~~L 94 (270)
.++++.++++|+
T Consensus 13 ~iLt~~ILvFWf 24 (34)
T PF08113_consen 13 MILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555553
No 78
>PF14828 Amnionless: Amnionless
Probab=26.02 E-value=33 Score=33.53 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=12.5
Q ss_pred HHHHHHHheeeEEEecCCCCEE
Q 024226 82 ILLVAIAGGILYVLYRPHRPSF 103 (270)
Q Consensus 82 ill~gia~li~~Lv~rP~~P~f 103 (270)
+++++++++++|+.+.|+.|.+
T Consensus 348 Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 348 LLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHHHhheEEeccccccc
Confidence 3445555555666665666655
No 79
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.87 E-value=58 Score=31.26 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=9.3
Q ss_pred eeeEEEEEEEEEEcC
Q 024226 120 TLVTNINLNVITRNP 134 (270)
Q Consensus 120 ~l~~~l~l~l~~~NP 134 (270)
.|+..++++.++++-
T Consensus 83 NLtkeLN~t~~~K~~ 97 (442)
T PF06637_consen 83 NLTKELNLTTRAKDA 97 (442)
T ss_pred HHHHHhchhHHHHHH
Confidence 355666666666654
No 80
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=25.65 E-value=2.9e+02 Score=25.08 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=29.0
Q ss_pred heeeEEEecCCCCEEEEEEEEEeeee-----cCCCceeeEEEEEEEEEEcCCCeeeEEE
Q 024226 89 GGILYVLYRPHRPSFSVSSLKIQTLN-----LTSSQTLVTNINLNVITRNPNKELVFYY 142 (270)
Q Consensus 89 ~li~~Lv~rP~~P~f~V~s~~l~~fn-----ls~~s~l~~~l~l~l~~~NPN~ki~i~Y 142 (270)
+.+.|.+..|+.. ...+.+.+.+=+ +.++-..+.+.++.+-+.|.-.+ ...|
T Consensus 153 ~~~~~~~~~p~~~-e~fTefyll~~~~~a~~Ypt~l~~ge~~~v~vgI~NhE~~-~~~Y 209 (287)
T PF07760_consen 153 GSVGYAVVFPKQG-EPFTEFYLLGENGKAGDYPTNLTSGEPGTVIVGIENHEGR-PENY 209 (287)
T ss_pred HHheeEEecCCCC-CCceEEEEECCCCccccCCeeEEcCCcEEEEEEEEcCCCC-cEEE
Confidence 3667777777653 333444444211 11111345567788888998875 5666
No 81
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.48 E-value=39 Score=26.44 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.3
Q ss_pred HHHheeeEEEe
Q 024226 86 AIAGGILYVLY 96 (270)
Q Consensus 86 gia~li~~Lv~ 96 (270)
.++-++.|...
T Consensus 15 l~asl~~wr~~ 25 (107)
T PF15330_consen 15 LAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHH
Confidence 34444556544
No 82
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=24.51 E-value=2.2e+02 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEEEEEEEEeeeecCCC------c-eeeEEEEEEEEEEcCC
Q 024226 102 SFSVSSLKIQTLNLTSS------Q-TLVTNINLNVITRNPN 135 (270)
Q Consensus 102 ~f~V~s~~l~~fnls~~------s-~l~~~l~l~l~~~NPN 135 (270)
.|+..++++..||+... + +++.+-.+-.+++||-
T Consensus 91 t~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi 131 (288)
T KOG2621|consen 91 TFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPI 131 (288)
T ss_pred eeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHH
Confidence 57888999999987532 1 3444444445555554
No 83
>PHA03049 IMV membrane protein; Provisional
Probab=23.95 E-value=26 Score=25.06 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHheeeEEEecC
Q 024226 78 LIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 78 ll~lill~gia~li~~Lv~rP 98 (270)
++++++-++|+++|+|-+|+-
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455567778888888753
No 84
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=23.47 E-value=2.8e+02 Score=20.82 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=32.1
Q ss_pred eeeEEEEEEEEEEcCCCeeeEEEcc---eEEEEEEecCCCeeeecc--cCCceeecCCceEEEEEEEE
Q 024226 120 TLVTNINLNVITRNPNKELVFYYDP---ITVTVTSGDNDDVNVGAG--SFPSFRHGTKNTTELKASIK 182 (270)
Q Consensus 120 ~l~~~l~l~l~~~NPN~ki~i~Y~~---~~v~v~~~~Y~g~~Lg~~--~vP~F~q~~~ntt~v~~~l~ 182 (270)
.+.-++++.+++.||... .++-=. ....+. |.|...... .......+++++..+...+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~---ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVE---YTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEEEEEEE---CTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEEEEEEE---ECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 455789999999999773 222111 223334 888765322 23445666666666665553
No 85
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=23.19 E-value=79 Score=24.46 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=7.4
Q ss_pred HHHHHHHHHHheeeE
Q 024226 79 IILILLVAIAGGILY 93 (270)
Q Consensus 79 l~lill~gia~li~~ 93 (270)
+..++.+|+.+.+++
T Consensus 26 asVvvavGl~aGLfF 40 (106)
T PF14654_consen 26 ASVVVAVGLFAGLFF 40 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333445555555554
No 86
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.77 E-value=80 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=7.7
Q ss_pred HHHHHHHheeeEEEec
Q 024226 82 ILLVAIAGGILYVLYR 97 (270)
Q Consensus 82 ill~gia~li~~Lv~r 97 (270)
+++++++++++|++.|
T Consensus 247 ~~~~~~~~~~~~~~~R 262 (262)
T PF14257_consen 247 LPLILIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHHHHHheEeC
Confidence 3444455555555544
No 87
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=22.58 E-value=45 Score=17.38 Aligned_cols=7 Identities=43% Similarity=0.928 Sum_probs=4.6
Q ss_pred EEEEEEe
Q 024226 263 IKIWKFT 269 (270)
Q Consensus 263 ~~~~~w~ 269 (270)
+.-|+||
T Consensus 6 ~~nwwwt 12 (18)
T PF08055_consen 6 IQNWWWT 12 (18)
T ss_pred ccceeee
Confidence 3458887
No 88
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.57 E-value=37 Score=28.31 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHheeeEEEecCC
Q 024226 71 CLWVTITLIILILLVAIAGGILYVLYRPH 99 (270)
Q Consensus 71 ~~~~~~~ll~lill~gia~li~~Lv~rP~ 99 (270)
..|+..++++++.+++.+++.+|....|.
T Consensus 6 ~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 6 LIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 44555555555556667777888888873
No 89
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.43 E-value=23 Score=23.34 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=5.3
Q ss_pred eeEEEecCCC
Q 024226 91 ILYVLYRPHR 100 (270)
Q Consensus 91 i~~Lv~rP~~ 100 (270)
+++-+|+|+.
T Consensus 25 i~~w~~~~~~ 34 (49)
T PF05545_consen 25 IVIWAYRPRN 34 (49)
T ss_pred HHHHHHcccc
Confidence 3334667763
No 90
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=22.33 E-value=5.3e+02 Score=22.57 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=27.6
Q ss_pred ceeeEEEEEEEEEEcCCCeeeEEEc--ceEEEEEEecCCCeeee
Q 024226 119 QTLVTNINLNVITRNPNKELVFYYD--PITVTVTSGDNDDVNVG 160 (270)
Q Consensus 119 s~l~~~l~l~l~~~NPN~ki~i~Y~--~~~v~v~~~~Y~g~~Lg 160 (270)
..+...-+.+|.++=||+ +.+.+. ..+..++ |+|..+-
T Consensus 35 qklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~---yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFY---YDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEE---ECCCEEE
Confidence 367777788999999997 777774 4456666 7776553
No 91
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=22.33 E-value=7.4e+02 Score=24.20 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=13.5
Q ss_pred ceeecCCceEEEEEEEEEc
Q 024226 166 SFRHGTKNTTELKASIKGN 184 (270)
Q Consensus 166 ~F~q~~~ntt~v~~~l~~~ 184 (270)
++..++.++..+.+.+...
T Consensus 382 ~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred eEEECCCCEEEEEEEEEec
Confidence 6777887777777766554
No 92
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=22.22 E-value=1e+02 Score=29.70 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 024226 68 CSCCLWVTITLIILILLVAIAG 89 (270)
Q Consensus 68 c~c~~~~~~~ll~lill~gia~ 89 (270)
|||..|.+.+ ..++..+||.+
T Consensus 59 ~~c~~~~~~i-a~lvc~aaigv 79 (406)
T PF04906_consen 59 CCCLTWSLVI-ATLVCCAAIGV 79 (406)
T ss_pred CcchHHHHHH-HHHHHHHHHHc
Confidence 4567776543 34444555543
No 93
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.12 E-value=32 Score=21.81 Aligned_cols=10 Identities=20% Similarity=0.085 Sum_probs=4.8
Q ss_pred HHheeeEEEe
Q 024226 87 IAGGILYVLY 96 (270)
Q Consensus 87 ia~li~~Lv~ 96 (270)
|...|||+++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3344566544
No 94
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=22.04 E-value=1.2e+02 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHheeeEEEecC-CCC
Q 024226 71 CLWVTITLIILILLVAIAGGILYVLYRP-HRP 101 (270)
Q Consensus 71 ~~~~~~~ll~lill~gia~li~~Lv~rP-~~P 101 (270)
+.|.+..++.++++++=+++++|+-|-| ..|
T Consensus 148 laW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 148 LAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 6899999998888888889999998877 344
No 95
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=21.98 E-value=95 Score=27.46 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHheeeEEEe
Q 024226 78 LIILILLVAIAGGILYVLY 96 (270)
Q Consensus 78 ll~lill~gia~li~~Lv~ 96 (270)
++.+++++.+.++++|.++
T Consensus 37 ~~~~ii~v~v~~~~~~~~~ 55 (226)
T TIGR01433 37 GLMLLVVIPVILMTLFFAW 55 (226)
T ss_pred HHHHHHHHHHHHHHheeeE
Confidence 3334444555555555554
No 96
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=21.95 E-value=76 Score=21.94 Aligned_cols=9 Identities=0% Similarity=0.098 Sum_probs=6.1
Q ss_pred EecCCCCEE
Q 024226 95 LYRPHRPSF 103 (270)
Q Consensus 95 v~rP~~P~f 103 (270)
.+-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 456877765
No 97
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=21.53 E-value=77 Score=24.97 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=11.4
Q ss_pred EEEEEEEEcCCC----eeeEEEcc
Q 024226 125 INLNVITRNPNK----ELVFYYDP 144 (270)
Q Consensus 125 l~l~l~~~NPN~----ki~i~Y~~ 144 (270)
.--++-+.|||. .+.++||+
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds 74 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDS 74 (109)
T ss_pred ceeeEEecCCCcccccceEEEEcc
Confidence 334566777773 35566653
No 98
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=21.08 E-value=31 Score=24.78 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHheeeEEEecC
Q 024226 78 LIILILLVAIAGGILYVLYRP 98 (270)
Q Consensus 78 ll~lill~gia~li~~Lv~rP 98 (270)
++++++-++++++|+|-+|+-
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334445566777788877753
No 99
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=21.08 E-value=1.7e+02 Score=17.69 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q 024226 71 CLWVTITLIIL 81 (270)
Q Consensus 71 ~~~~~~~ll~l 81 (270)
|.|++.++++.
T Consensus 4 faWilG~~lA~ 14 (30)
T TIGR02106 4 FAWILGTLLAC 14 (30)
T ss_pred HHHHHHHHHHH
Confidence 67888876544
No 100
>PF15050 SCIMP: SCIMP protein
Probab=21.02 E-value=29 Score=27.82 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHheeeEEEec
Q 024226 72 LWVTITLIILILLVAIAGGILYVLYR 97 (270)
Q Consensus 72 ~~~~~~ll~lill~gia~li~~Lv~r 97 (270)
+|+++.+. +|++-.++++|+|.+.|
T Consensus 8 FWiiLAVa-II~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVA-IILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 57665543 33444445666776654
No 101
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=20.74 E-value=28 Score=29.79 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=8.1
Q ss_pred cCCceeecCCceEEEE
Q 024226 163 SFPSFRHGTKNTTELK 178 (270)
Q Consensus 163 ~vP~F~q~~~ntt~v~ 178 (270)
..|+... ++||+.+-
T Consensus 174 RAPGMRA-PRNTtQFl 188 (214)
T PF15482_consen 174 RAPGMRA-PRNTTQFL 188 (214)
T ss_pred cCccccC-CCChhHHH
Confidence 3455554 46666553
No 102
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=20.31 E-value=1e+02 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=21.9
Q ss_pred HHHHheeeEEEecCCCCEEEEEEEEEeee
Q 024226 85 VAIAGGILYVLYRPHRPSFSVSSLKIQTL 113 (270)
Q Consensus 85 ~gia~li~~Lv~rP~~P~f~V~s~~l~~f 113 (270)
+++.++++|...-+..|.|.+..+.+++=
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 42 LLLVLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHHheehhhhcCCccceEEEEecC
Confidence 33445566777788889999999999883
No 103
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.27 E-value=4.9e+02 Score=22.07 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=8.7
Q ss_pred eEEEEEEEEEEEEEeEEE
Q 024226 207 PLKIKLETKVKVKMGAVK 224 (270)
Q Consensus 207 ~l~v~~~~~vr~kvG~~~ 224 (270)
.+++.+.-.+.=.+|.+.
T Consensus 141 ~v~l~l~wnv~P~vG~l~ 158 (175)
T PF04573_consen 141 NVTLTLHWNVMPWVGLLP 158 (175)
T ss_pred eEEEEEEEEeecCEEEEE
Confidence 444444444444456554
Done!