Query 024226
Match_columns 270
No_of_seqs 189 out of 842
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.2 9.3E-06 3.2E-10 68.0 11.0 77 99-184 43-120 (174)
2 1xo8_A AT1G01470; structural g 98.1 4.3E-06 1.5E-10 68.5 6.7 77 99-184 20-97 (151)
3 3but_A Uncharacterized protein 97.8 0.00082 2.8E-08 53.9 14.6 73 122-198 17-90 (136)
4 3hd7_B Syntaxin-1A; membrane p 38.5 22 0.00075 26.6 3.0 7 81-87 100-106 (109)
5 2knc_B Integrin beta-3; transm 35.0 17 0.00058 25.8 1.7 19 76-94 15-33 (79)
6 2lk9_A Bone marrow stromal ant 26.0 46 0.0016 19.7 2.2 19 68-86 3-21 (35)
7 2k9j_B Integrin beta-3; transm 25.4 35 0.0012 21.3 1.7 17 77-93 15-31 (43)
8 3s8f_C Cytochrome C oxidase po 16.8 29 0.00098 20.7 -0.0 12 83-94 13-24 (34)
9 1nrp_R Receptor based peptide 16.3 28 0.00096 18.8 -0.1 10 128-137 5-14 (26)
10 1x9t_B N-terminl peptide of fi 16.0 60 0.002 18.1 1.2 12 3-14 12-23 (26)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.23 E-value=9.3e-06 Score=68.00 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCCEEEEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccCC-ceeecCCceEEE
Q 024226 99 HRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSFP-SFRHGTKNTTEL 177 (270)
Q Consensus 99 ~~P~f~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~vP-~F~q~~~ntt~v 177 (270)
+.|+++|+++++.++++. ...|.+.|+++|||. ..|.+..++.++. -+|..|+++..+ ++..++++++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~---vnG~~lasG~s~~~~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILK---SATRTIASGTIPDPGSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEE---ESSSCEEEEEESCCCBCCSSEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEE---ECCEEEEEEecCCCceECCCCcEEE
Confidence 679999999999988764 378999999999999 6999999999998 789999999987 589999999999
Q ss_pred EEEEEEc
Q 024226 178 KASIKGN 184 (270)
Q Consensus 178 ~~~l~~~ 184 (270)
.+.++..
T Consensus 114 ~Vpv~v~ 120 (174)
T 1yyc_A 114 DVPVKVA 120 (174)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 9988775
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.12 E-value=4.3e-06 Score=68.49 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCCEEEEEEEEEeeeecCCCceeeEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeecccCC-ceeecCCceEEE
Q 024226 99 HRPSFSVSSLKIQTLNLTSSQTLVTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGSFP-SFRHGTKNTTEL 177 (270)
Q Consensus 99 ~~P~f~V~s~~l~~fnls~~s~l~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~vP-~F~q~~~ntt~v 177 (270)
+.|+++|.++++.++++ ....|.+.++++|||. ..+.+++++.++. -+|..++++..+ ++..++++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~---vng~~lasG~~~~~~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFH---SAGREIGKGKIPDPGSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEE---SSSSCEEEEEEEECCCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEE---ECCEEEEEEecCCCcEECCCCcEEE
Confidence 57999999999988765 3468999999999999 6999999999998 899999999987 589999999999
Q ss_pred EEEEEEc
Q 024226 178 KASIKGN 184 (270)
Q Consensus 178 ~~~l~~~ 184 (270)
.+.++..
T Consensus 91 ~vpv~v~ 97 (151)
T 1xo8_A 91 DIPVVVP 97 (151)
T ss_dssp EECCCEE
T ss_pred EEEEEEE
Confidence 8877665
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.81 E-value=0.00082 Score=53.90 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=61.1
Q ss_pred eEEEEEEEEEEcCCCeeeEEEcceEEEEEEecCCCeeeeccc-CCceeecCCceEEEEEEEEEcccccChHHHHHHHH
Q 024226 122 VTNINLNVITRNPNKELVFYYDPITVTVTSGDNDDVNVGAGS-FPSFRHGTKNTTELKASIKGNGQELDDASASKVKS 198 (270)
Q Consensus 122 ~~~l~l~l~~~NPN~ki~i~Y~~~~v~v~~~~Y~g~~Lg~~~-vP~F~q~~~ntt~v~~~l~~~~~~l~~~~~~~L~~ 198 (270)
...|.+.|++.|||. +.+.++.++.++. .+|..||+|. ...+..++.+++.+.+.+..+...+.+...+.|++
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~---lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~n 90 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIE---MNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIAN 90 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEE---ETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHHT
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEE---ECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhhc
Confidence 478999999999998 7999999999999 8999999987 57899999998999999988866665555444443
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=38.48 E-value=22 Score=26.59 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 024226 81 LILLVAI 87 (270)
Q Consensus 81 lill~gi 87 (270)
+++++|+
T Consensus 100 ~~~~~~~ 106 (109)
T 3hd7_B 100 IASTIGG 106 (109)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 3344443
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.03 E-value=17 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.488 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHheeeEE
Q 024226 76 ITLIILILLVAIAGGILYV 94 (270)
Q Consensus 76 ~~ll~lill~gia~li~~L 94 (270)
+.+++.++++|++++++|-
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556777777777763
No 6
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=25.99 E-value=46 Score=19.72 Aligned_cols=19 Identities=16% Similarity=0.404 Sum_probs=8.1
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 024226 68 CSCCLWVTITLIILILLVA 86 (270)
Q Consensus 68 c~c~~~~~~~ll~lill~g 86 (270)
|....|+=.++++.++.+|
T Consensus 3 cKL~lg~Gvl~LLviV~Lg 21 (35)
T 2lk9_A 3 SKLLLGIGILVLLIIVILG 21 (35)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred ceeeecccHHHHHHHHHhc
Confidence 5666665444443333333
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.37 E-value=35 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHheeeE
Q 024226 77 TLIILILLVAIAGGILY 93 (270)
Q Consensus 77 ~ll~lill~gia~li~~ 93 (270)
.++..++++|++.+++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445677788777766
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=16.85 E-value=29 Score=20.70 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=5.8
Q ss_pred HHHHHHheeeEE
Q 024226 83 LLVAIAGGILYV 94 (270)
Q Consensus 83 ll~gia~li~~L 94 (270)
+++|+.++++|+
T Consensus 13 ~ilg~~I~i~W~ 24 (34)
T 3s8f_C 13 LVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555553
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.26 E-value=28 Score=18.84 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=0.0
Q ss_pred EEEEEcCCCe
Q 024226 128 NVITRNPNKE 137 (270)
Q Consensus 128 ~l~~~NPN~k 137 (270)
.+..+|||+|
T Consensus 5 sfllrnpndk 14 (26)
T 1nrp_R 5 SFLLRNPNDK 14 (26)
T ss_pred hhhhcCCCcc
No 10
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=16.01 E-value=60 Score=18.09 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 024226 3 DRVYPSAKPTTN 14 (270)
Q Consensus 3 ~~~~p~~~~~~~ 14 (270)
|.|||-..++++
T Consensus 12 nPVYPYd~~~~~ 23 (26)
T 1x9t_B 12 NPVYPYDTECXX 23 (26)
T ss_pred cccccCCCCccc
Done!