BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024227
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 77 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 136
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 137 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 196
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFG 267
+ + PPP + ++ +++ G + + +TG V+ F G+F
Sbjct: 197 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFS 244
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 75 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 134
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 135 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 194
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFG 267
+ + PPP + ++ +++ G + + +TG V+ F G+F
Sbjct: 195 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFS 242
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 48 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 107
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 108 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 167
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 260
+ + PPP + ++ +++ G + + +TG V+ F
Sbjct: 168 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEF 208
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYS 108
+YWK + G D++ + + + S PNSVL E+ Y+
Sbjct: 111 DYWKNAKTPDGQDIRXQIKVGEYKSRPNSVLTATGEVFSYA 151
>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
Binding Antigen 140 (Pfeba-140BAEBL)
Length = 615
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 24 GSAMSKSVNGLLGYEGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMM-----QKYIG 78
GS + K G E L VN + + + R +W E ++N WK+M K
Sbjct: 408 GSDIIKDYYGKKMEENLNKVNKDKKRNEESLKIFREKWWDENKENVWKVMSAVLKNKETC 467
Query: 79 ADVQSLVTLPVFI 91
D +P F+
Sbjct: 468 KDYDKFQKIPQFL 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,809,061
Number of Sequences: 62578
Number of extensions: 357888
Number of successful extensions: 900
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 7
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)