Query 024227
Match_columns 270
No_of_seqs 206 out of 810
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01237 Oxysterol_BP: Oxyster 100.0 1.2E-67 2.5E-72 499.1 17.7 201 68-269 1-202 (354)
2 KOG2209 Oxysterol-binding prot 100.0 5.9E-66 1.3E-70 471.8 11.2 205 65-270 40-248 (445)
3 KOG1737 Oxysterol-binding prot 100.0 1.1E-60 2.4E-65 482.1 17.5 261 8-269 372-636 (799)
4 KOG2210 Oxysterol-binding prot 100.0 1.1E-57 2.5E-62 431.9 14.0 207 62-269 30-247 (392)
5 PF02084 Bindin: Bindin; Inte 61.1 27 0.00058 31.8 6.2 52 68-125 104-155 (238)
6 PF14254 DUF4348: Domain of un 46.2 28 0.00061 32.4 4.0 42 223-264 224-266 (273)
7 PF10504 DUF2452: Protein of u 28.7 50 0.0011 28.4 2.6 25 141-165 84-109 (159)
8 PF14714 KH_dom-like: KH-domai 28.2 63 0.0014 24.3 2.8 21 163-183 30-50 (80)
9 COG2154 Pterin-4a-carbinolamin 27.1 21 0.00045 28.5 -0.0 19 160-178 48-66 (101)
10 PF07576 BRAP2: BRCA1-associat 18.6 1.3E+02 0.0029 24.0 3.1 17 141-157 75-91 (110)
No 1
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=1.2e-67 Score=499.09 Aligned_cols=201 Identities=44% Similarity=0.782 Sum_probs=172.3
Q ss_pred hHHHHHHhccCccccCCcccCceeeccCchHHHhhhhccchHHhhhccCCCCHHHHHHHHHHHHhhhhhh-ccccCCCCC
Q 024227 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFN 146 (270)
Q Consensus 68 ~iw~~lk~~iG~DLts~vslPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~dp~eRm~~V~~f~iS~~~~-~~~~~KPfN 146 (270)
|+|++||+++|+||++ |+||++|+||+|+|||+||+|+|++||++|++++||++||++|++|++|+|+. ..|.+||||
T Consensus 1 s~w~~lK~~~G~dLs~-islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~~KPfN 79 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSR-ISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAEEDDPLERMLYVAAFALSSYSSTPGRTKKPFN 79 (354)
T ss_dssp HHHHHHHHT--S-GGG-S---GGGEEEEEGGGGGGGGSSSHHHHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE-
T ss_pred CHHHHhhhcCCCChhc-CccCceecCCCcHHHhhhhhhhChHHHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCCCcCcC
Confidence 6899999999999987 99999999999999999999999999999999999999999999999999987 567889999
Q ss_pred CCCCceEEEEecCcEEEEEeecccCCCeeEEEEeCCcEEEEEEeceeeEEEeeEEEEEEeeeEEEEEecCCeEEEEecCC
Q 024227 147 PVLGETFEMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPP 226 (270)
Q Consensus 147 PiLGETfe~~~~~~~~fiaEQVSHHPPIsaf~~e~~~~~~~~~~~~k~kF~G~sv~v~~~G~~~i~l~~~ge~y~~~~P~ 226 (270)
||||||||+..+++++|+||||||||||||||+++++|.++|+..++++|+||||++.+.|..+|+|.++||+|+|++|+
T Consensus 80 PiLGETfe~~~~~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p~ 159 (354)
T PF01237_consen 80 PILGETFELVRPDGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKPT 159 (354)
T ss_dssp --TT-EE--TT-T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--S
T ss_pred CCCcceeeeccCceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecCc
Confidence 99999999986689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCeeeecCCcEEEEeCCCCCEEEEEEEeCCcccCC
Q 024227 227 TKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGWS 269 (270)
Q Consensus 227 ~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~~~fg~~ 269 (270)
++++||++|++|+|+.|+++|+|.+||++|+|+|+++||||+.
T Consensus 160 ~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~ 202 (354)
T PF01237_consen 160 TYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGK 202 (354)
T ss_dssp EEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSS
T ss_pred EEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCccccc
Confidence 9999999999999999999999999999999999999999985
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-66 Score=471.81 Aligned_cols=205 Identities=40% Similarity=0.717 Sum_probs=197.6
Q ss_pred cchhHHHHHHhccCccccCCcccCceeeccCchHHHhhhhccchHHhhhccCCCCHHHHHHHHHHHHhhhhhhc-cccCC
Q 024227 65 ERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAY-RRAWK 143 (270)
Q Consensus 65 ~~~~iw~~lk~~iG~DLts~vslPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~-~~~~K 143 (270)
+..|||.+||++||+||++ |++||+++||+|||||++|+|+|..||.+|+.+.||.|||.+|+||++|+..+. .|..|
T Consensus 40 ~d~SIW~Ilr~ciGkelSk-iTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~~~p~eRmqyVAAFAvsavas~weR~gK 118 (445)
T KOG2209|consen 40 NDFSIWSILRKCIGKELSK-ITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQSDPVERMQYVAAFAVSAVASQWERTGK 118 (445)
T ss_pred ccccHHHHHHhhhchhhhh-eeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 5579999999999999965 999999999999999999999999999999999999999999999999999764 68999
Q ss_pred CCCCCCCceEEEEecC-cEEEEEeecccCCCeeEEEEe--CCcEEEEEEeceeeEEEeeEEEEEEeeeEEEEEecCCeEE
Q 024227 144 PFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVL 220 (270)
Q Consensus 144 PfNPiLGETfe~~~~~-~~~fiaEQVSHHPPIsaf~~e--~~~~~~~~~~~~k~kF~G~sv~v~~~G~~~i~l~~~ge~y 220 (270)
||||+|||||++.+.+ |+|||||||||||||||||+| +..|.+.|+..|+.||||+||++.|.|...++|+++||.|
T Consensus 119 PFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksvea~Pkgtitle~~k~nEaY 198 (445)
T KOG2209|consen 119 PFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLKHNEAY 198 (445)
T ss_pred CCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceeccceeecCCCceEEEEecccCcce
Confidence 9999999999998754 999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred EEecCCeEEEEeecCCeeeecCCcEEEEeCCCCCEEEEEEEeCCcccCCC
Q 024227 221 DLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGWSL 270 (270)
Q Consensus 221 ~~~~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~~~fg~~~ 270 (270)
+|+.|+++|+|||+|++|||..|+|.|+|++||++|+++|+++|+||++|
T Consensus 199 tWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~l 248 (445)
T KOG2209|consen 199 TWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKEL 248 (445)
T ss_pred eccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccch
Confidence 99999999999999999999999999999999999999999999999875
No 3
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=482.13 Aligned_cols=261 Identities=42% Similarity=0.632 Sum_probs=228.4
Q ss_pred CCCcchheehhccccccccccccccCCCCCCCccccCCCCC-CcchhhhhhhcccccccchhHHHHHHhccCccccCCcc
Q 024227 8 QGGGFFASIAAGWSTFGSAMSKSVNGLLGYEGLEVVNPEGS-TEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVT 86 (270)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~iw~~lk~~iG~DLts~vs 86 (270)
.+.++..+.+|.+...+++...++++..........+++.. .++...+.-....+++.+.++|++||++||+||++ |+
T Consensus 372 ~~s~~~~s~~s~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlsk-v~ 450 (799)
T KOG1737|consen 372 EGSEDEESYTSDISDNGSSDALSADGDKSSQALNEKVPSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSK-VS 450 (799)
T ss_pred cccccccccccccccCCCccccccccccccccccccccccccccccccccCCCCcCcCCCccHHHHHhhcccccccc-cc
Confidence 44557888887777777777777777666655555555542 11111111111124566789999999999999985 99
Q ss_pred cCceeeccCchHHHhhhhccchHHhhhccCCCCHHHHHHHHHHHHhhhhh-hccccCCCCCCCCCceEEEEecC-cEEEE
Q 024227 87 LPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYF-AYRRAWKPFNPVLGETFEMVNHG-GVTFI 164 (270)
Q Consensus 87 lPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~dp~eRm~~V~~f~iS~~~-~~~~~~KPfNPiLGETfe~~~~~-~~~fi 164 (270)
|||.|+||+|+||+++|.++|++||++|++.+||++||++|++|++|+|. ...|..|||||+||||||+.+.+ |+||+
T Consensus 451 ~PV~~nEP~S~LQr~~EdlEYs~LLd~A~~~~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~ 530 (799)
T KOG1737|consen 451 MPVEFNEPLSLLQRVAEDLEYSELLDKAANYEDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFF 530 (799)
T ss_pred cceecCCcchHHHHhhhhccchhhhHHHHhcCCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeee
Confidence 99999999999999999999999999999999999999999999999994 45789999999999999999855 89999
Q ss_pred EeecccCCCeeEEEEeCCcEEEEEEeceeeEEEeeEEEEEEeeeEEEEEecCCeEEEEecCCeEEEEeecCCeeeecCCc
Q 024227 165 AEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGD 244 (270)
Q Consensus 165 aEQVSHHPPIsaf~~e~~~~~~~~~~~~k~kF~G~sv~v~~~G~~~i~l~~~ge~y~~~~P~~~v~gli~G~~~ie~~G~ 244 (270)
+|||||||||+|+|||+++|.++++..+++||||+||+|.|.|..+|+|++.|+.|.|.+|++.|+|||+|++|+|+.|.
T Consensus 531 sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge 610 (799)
T KOG1737|consen 531 SEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGE 610 (799)
T ss_pred eeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC-CEEEEEEEeCCcccCC
Q 024227 245 MVMTNLTTG-DKVVLYFQPCGWFGWS 269 (270)
Q Consensus 245 ~~I~~~~tg-~~a~i~F~~~~~fg~~ 269 (270)
|.|++++++ ++|.|+|++.+||+++
T Consensus 611 ~~i~n~~~~~~~c~L~F~~~~~~~~~ 636 (799)
T KOG1737|consen 611 MEITNHTTGSDKCKLKFVKAGYFSRN 636 (799)
T ss_pred EEEecCCCCcceeEEEEeeecccCCC
Confidence 999999999 7999999999999975
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-57 Score=431.86 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=195.1
Q ss_pred ccccchhHHHHHHh-ccCccccCCcccCceeeccCchHHHhhhhccchHHhhhccCCCCHHHHHHHHHHHHhhhhhhccc
Q 024227 62 KQEERDNYWKMMQK-YIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR 140 (270)
Q Consensus 62 ~~~~~~~iw~~lk~-~iG~DLts~vslPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~dp~eRm~~V~~f~iS~~~~~~~ 140 (270)
.++.+..+|.++++ ..|+||++ |+||+|++||+|+||++++++.|+|||..|...+||++||+.|++||+|+++..++
T Consensus 30 ~e~~~s~i~~L~sq~rpg~DLs~-v~LPtfile~rs~Le~~~~~~~~~dll~~~~~~~~p~~R~~~VvkwylS~~~~~~~ 108 (392)
T KOG2210|consen 30 LEEGKSIILDLLSQLRPGMDLSR-VVLPTFILEPRSLLEKYTDFSYHPDLLLEASSEADPLERMLAVVKWYLSGFHAGPK 108 (392)
T ss_pred hhhccceeecHhhhccCCCCccc-ccchhhhhhhHHHHHHhhhhhhccchhcccccCCCHHHHhhhheeeeehhcccccc
Confidence 35677889999866 79999986 99999999999999999999999999999999999999999999999999998765
Q ss_pred -cCCCCCCCCCceEEEEec-------CcEEEEEeecccCCCeeEEEEeCC--cEEEEEEeceeeEEEeeEEEEEEeeeEE
Q 024227 141 -AWKPFNPVLGETFEMVNH-------GGVTFIAEQVSHHPPMSAGHAENE--HFIYDVTSKLRTKFLGNSIDVYPVGRTR 210 (270)
Q Consensus 141 -~~KPfNPiLGETfe~~~~-------~~~~fiaEQVSHHPPIsaf~~e~~--~~~~~~~~~~k~kF~G~sv~v~~~G~~~ 210 (270)
.+|||||||||||+|.|. ..+.|+||||||||||||||++++ ++.++|+.+++++|.|+|+.|.+.|..+
T Consensus 109 ~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~ 188 (392)
T KOG2210|consen 109 GRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGV 188 (392)
T ss_pred cccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcE
Confidence 456999999999999872 579999999999999999999986 5999999999999999999999999999
Q ss_pred EEEecCCeEEEEecCCeEEEEeecCCeeeecCCcEEEEeCCCCCEEEEEEEeCCcccCC
Q 024227 211 VTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGWS 269 (270)
Q Consensus 211 i~l~~~ge~y~~~~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~~~fg~~ 269 (270)
++|.+++|+|.+|+|.++++|+++|.+|+|++|++.|.|++|++.|.++|+.++|+|+.
T Consensus 189 l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~ 247 (392)
T KOG2210|consen 189 LKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGK 247 (392)
T ss_pred EEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999974
No 5
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=61.09 E-value=27 Score=31.77 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=36.4
Q ss_pred hHHHHHHhccCccccCCcccCceeeccCchHHHhhhhccchHHhhhccCCCCHHHHHH
Q 024227 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLV 125 (270)
Q Consensus 68 ~iw~~lk~~iG~DLts~vslPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~dp~eRm~ 125 (270)
.+++-+|..+|. || |-|||-|+.|..+==.+-..=.|++||- ++-||.-|=.
T Consensus 104 Kvm~~ikavLga--TK-iDLPVDINDPYDlGLLLRhLRHHSNLLA---nIgdP~Vreq 155 (238)
T PF02084_consen 104 KVMEDIKAVLGA--TK-IDLPVDINDPYDLGLLLRHLRHHSNLLA---NIGDPEVREQ 155 (238)
T ss_pred HHHHHHHHHhcc--cc-cccccccCChhhHHHHHHHHHHHHHHHh---hcCCHHHHHH
Confidence 477788888886 55 8999999999875333333335777874 5677777744
No 6
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=46.18 E-value=28 Score=32.43 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=26.2
Q ss_pred ecCCeEEEEeecCCeeeecCCc-EEEEeCCCCCEEEEEEEeCC
Q 024227 223 VPPPTKVHNLIFGRTWIDSPGD-MVMTNLTTGDKVVLYFQPCG 264 (270)
Q Consensus 223 ~~P~~~v~gli~G~~~ie~~G~-~~I~~~~tg~~a~i~F~~~~ 264 (270)
.+|...+.||++|++|.+-..+ +.++.-.+|+..++.|+.+|
T Consensus 224 ~lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 224 ELPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp ---SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred cCCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 5788999999999999995555 45666799999999998653
No 7
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=28.66 E-value=50 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=19.2
Q ss_pred cCCCCCCCCCceEEEEe-cCcEEEEE
Q 024227 141 AWKPFNPVLGETFEMVN-HGGVTFIA 165 (270)
Q Consensus 141 ~~KPfNPiLGETfe~~~-~~~~~fia 165 (270)
++==|.|+.|+||.+.. ++|..|++
T Consensus 84 A~cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 84 AKCNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred cccCceecCCCEEEEEECCCCCEEEE
Confidence 35568999999999876 46666665
No 8
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=28.17 E-value=63 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.7
Q ss_pred EEEeecccCCCeeEEEEeCCc
Q 024227 163 FIAEQVSHHPPMSAGHAENEH 183 (270)
Q Consensus 163 fiaEQVSHHPPIsaf~~e~~~ 183 (270)
+++-||+..||.-+++|-+++
T Consensus 30 ~Y~tQv~~~PPtFv~f~N~~~ 50 (80)
T PF14714_consen 30 YYATQVGTRPPTFVLFVNDPE 50 (80)
T ss_dssp EEEEEEETTTTEEEEEES-CC
T ss_pred EEEEeCCCCCCEEEEEeCCcc
Confidence 466799999999999987643
No 9
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=27.13 E-value=21 Score=28.51 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.6
Q ss_pred cEEEEEeecccCCCeeEEE
Q 024227 160 GVTFIAEQVSHHPPMSAGH 178 (270)
Q Consensus 160 ~~~fiaEQVSHHPPIsaf~ 178 (270)
.+-.+|||.-|||=|+.-|
T Consensus 48 ~vA~~Ae~~~HHPdi~~~y 66 (101)
T COG2154 48 RVAEIAEKLNHHPDIEVVY 66 (101)
T ss_pred HHHHHHHHhCCCCCeEEEe
Confidence 3457899999999998765
No 10
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=18.59 E-value=1.3e+02 Score=24.04 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.6
Q ss_pred cCCCCCCCCCceEEEEe
Q 024227 141 AWKPFNPVLGETFEMVN 157 (270)
Q Consensus 141 ~~KPfNPiLGETfe~~~ 157 (270)
..||||++--||.++++
T Consensus 75 NGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 75 NGKPFNSLEPETCHVVF 91 (110)
T ss_pred CCCccCCCCCceeEEEE
Confidence 46999999999988765
Done!