Query 024227
Match_columns 270
No_of_seqs 206 out of 810
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 8E-65 2.7E-69 490.1 21.8 202 64-269 8-246 (438)
2 2c5i_P Vacuolar protein sortin 43.4 6.2 0.00021 23.4 0.4 10 165-174 1-10 (29)
3 3sbu_A Hypothetical NTF2-like 36.5 36 0.0012 30.1 4.4 42 223-264 205-248 (261)
4 1mw5_A Hypothetical protein HI 23.2 31 0.0011 27.7 1.5 44 76-120 111-169 (187)
5 1igq_A Transcriptional repress 9.5 3.5E+02 0.012 18.7 3.8 28 206-233 33-60 (62)
6 1q68_A T-cell surface glycopro 9.2 2.2E+02 0.0075 17.6 2.3 27 122-148 10-38 (38)
7 2bzv_A Fiber protein 2; recept 8.4 1E+02 0.0035 25.9 0.8 13 160-172 166-178 (181)
8 2nyd_A UPF0135 protein SA1388; 7.9 95 0.0032 28.7 0.4 13 160-175 61-73 (370)
9 2fyw_A Conserved hypothetical 7.6 1E+02 0.0035 26.8 0.4 14 159-175 58-71 (267)
10 1pk8_A RAT synapsin I; ATP bin 7.6 88 0.003 29.6 0.0 12 7-18 72-83 (422)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=8e-65 Score=490.12 Aligned_cols=202 Identities=25% Similarity=0.417 Sum_probs=188.1
Q ss_pred ccchhHHHHHHhccCc---cccCCcccCceeeccCchHHHhhhhccchHHhhhccCCC----------C------HHHHH
Q 024227 64 EERDNYWKMMQKYIGA---DVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECE----------D------PYMRL 124 (270)
Q Consensus 64 ~~~~~iw~~lk~~iG~---DLts~vslPv~i~EP~S~Lq~~ae~~~y~~lL~~Aa~~~----------d------p~eRm 124 (270)
+.+.++|+.++++||+ ||++ |+||++||||+|+||+++++++|++||++|+..+ | |++||
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSk-IslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm 86 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSS-LSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARM 86 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGG-SCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHH
T ss_pred cccccHHHHHHHHhhhcCCChhh-cccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHH
Confidence 4668999888777765 9986 9999999999999999999999999999888776 9 99999
Q ss_pred HHHHHHHhhhhhh-c-------cccCCCCCCCCCceEEEEecC------c-EEEEEeecccCCCeeEEEEeCC--cEEEE
Q 024227 125 VYASSWALSIYFA-Y-------RRAWKPFNPVLGETFEMVNHG------G-VTFIAEQVSHHPPMSAGHAENE--HFIYD 187 (270)
Q Consensus 125 ~~V~~f~iS~~~~-~-------~~~~KPfNPiLGETfe~~~~~------~-~~fiaEQVSHHPPIsaf~~e~~--~~~~~ 187 (270)
++|++|++|+|+. + .+.+|||||||||||+|.+++ | ++|+||||||||||||||++++ +|.++
T Consensus 87 ~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~ 166 (438)
T 1zhx_A 87 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQ 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEE
Confidence 9999999999864 2 467999999999999999854 5 8999999999999999999997 59999
Q ss_pred EEeceeeEEEee-EEEEEEeeeEEEEEecCCeEEEEecCCeEEEEeecCCeeeecCCcEEEEeCCCCCEEEEEEEeCCcc
Q 024227 188 VTSKLRTKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWF 266 (270)
Q Consensus 188 ~~~~~k~kF~G~-sv~v~~~G~~~i~l~~~ge~y~~~~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~~~f 266 (270)
|+..+++||+|+ ||+|.+.|..+|+|. ||+|.|++|+++|+|||+|++|+|++|+|.|+| +||++|+|+|+++|||
T Consensus 167 g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~~kg~f 243 (438)
T 1zhx_A 167 GYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYF 243 (438)
T ss_dssp EEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEECSSSS
T ss_pred EEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEcCCCCc
Confidence 999999999999 999999999999996 899999999999999999999999999999999 7999999999999999
Q ss_pred cCC
Q 024227 267 GWS 269 (270)
Q Consensus 267 g~~ 269 (270)
|+.
T Consensus 244 ~g~ 246 (438)
T 1zhx_A 244 SGK 246 (438)
T ss_dssp CSS
T ss_pred CCC
Confidence 975
No 2
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=43.35 E-value=6.2 Score=23.41 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=3.0
Q ss_pred EeecccCCCe
Q 024227 165 AEQVSHHPPM 174 (270)
Q Consensus 165 aEQVSHHPPI 174 (270)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6999998776
No 3
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=36.52 E-value=36 Score=30.15 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=33.8
Q ss_pred ecCCeEEEEeecCCee-eecCCc-EEEEeCCCCCEEEEEEEeCC
Q 024227 223 VPPPTKVHNLIFGRTW-IDSPGD-MVMTNLTTGDKVVLYFQPCG 264 (270)
Q Consensus 223 ~~P~~~v~gli~G~~~-ie~~G~-~~I~~~~tg~~a~i~F~~~~ 264 (270)
.+|.-.+.||++|.++ .+-..+ +.|+.-.+|+..++.|+.++
T Consensus 205 ~lP~~~i~NI~YGQky~~~s~~KIl~~rGi~NG~e~~l~Fkk~~ 248 (261)
T 3sbu_A 205 ALPADXLSNINYGQQNDDNASHKILALXGIGNGFSNILYFQRXD 248 (261)
T ss_dssp CCCSSEEEEEESSCCCCTTCSEEEEEEEESSSCCEEEEEEEEET
T ss_pred ccCcccceeeeccccccCCCCceEEEEEeecCceeEEEEEeecC
Confidence 4599999999999999 455544 56677799999999998653
No 4
>1mw5_A Hypothetical protein HI1480; structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 2.10A {Haemophilus influenzae} SCOP: d.259.1.1
Probab=23.20 E-value=31 Score=27.69 Aligned_cols=44 Identities=34% Similarity=0.607 Sum_probs=31.0
Q ss_pred ccCc---cccCCcccCceeeccCchHHHhhh------------hccchHHhhhccCCCCH
Q 024227 76 YIGA---DVQSLVTLPVFISEPNSVLQRMAE------------LMEYSHLLDLADECEDP 120 (270)
Q Consensus 76 ~iG~---DLts~vslPv~i~EP~S~Lq~~ae------------~~~y~~lL~~Aa~~~dp 120 (270)
+||. ||++ ++.|.+++-|.|+--|+.- .|+|++-|.--.+..||
T Consensus 111 kigsepldlsn-lpapfyvllpesfaaritllvqdkalpyvrvsmeywhaleykgelndp 169 (187)
T 1mw5_A 111 KIGSEPLDLSN-LPAPFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGELNDP 169 (187)
T ss_dssp HHHHSCCEETT-EECCEEEEEESSHHHHHHHHHHCSEEEEEEEEEEEGGGGSCCCSCC--
T ss_pred cccCCCccccc-CCCceeEeccHHhhhHhhhhhhcccCceeeeeHHHHHHHHhccccCCh
Confidence 4774 8876 7999999999999887753 36788776644444444
No 5
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=9.52 E-value=3.5e+02 Score=18.71 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.8
Q ss_pred eeeEEEEEecCCeEEEEecCCeEEEEee
Q 024227 206 VGRTRVTLKRDGVVLDLVPPPTKVHNLI 233 (270)
Q Consensus 206 ~G~~~i~l~~~ge~y~~~~P~~~v~gli 233 (270)
.|...|++.++|++++-..-.+.+..++
T Consensus 33 ~G~~wiKyED~G~e~E~d~~~v~l~al~ 60 (62)
T 1igq_A 33 EGYAWLKYEDDGQEFEANLADVKLVALI 60 (62)
T ss_dssp TTEEEEEETTTCCEEEEEGGGCEEEEEE
T ss_pred CceEEEEEecCCcEEEEeccceEEEeee
Confidence 5788899988899999888887776655
No 6
>1q68_A T-cell surface glycoprotein CD4; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.48.1.1
Probab=9.21 E-value=2.2e+02 Score=17.62 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhh--hccccCCCCCCC
Q 024227 122 MRLVYASSWALSIYF--AYRRAWKPFNPV 148 (270)
Q Consensus 122 eRm~~V~~f~iS~~~--~~~~~~KPfNPi 148 (270)
+||.++-++..---. ..++..|++||+
T Consensus 10 ~RmsqikrlLsEKKTCqC~~r~qk~~~~~ 38 (38)
T 1q68_A 10 ERLSQIKRLLSEKKTCQCPHRFQKTCSPI 38 (38)
T ss_dssp SHHHHHHHHHHTTCSCCCCCSCCCSCSCC
T ss_pred HHHHHHHHHHhhcccccCcHHHhhccCCC
Confidence 678877665443222 245778999886
No 7
>2bzv_A Fiber protein 2; receptor, viral protein; 1.15A {Human adenovirus type 41} PDB: 2bzu_A
Probab=8.37 E-value=1e+02 Score=25.86 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=6.8
Q ss_pred cEEEEEeecccCC
Q 024227 160 GVTFIAEQVSHHP 172 (270)
Q Consensus 160 ~~~fiaEQVSHHP 172 (270)
.+.||+||=|||-
T Consensus 166 tFSYI~e~~~~~~ 178 (181)
T 2bzv_A 166 VFCYITEQGSHHH 178 (181)
T ss_dssp EEEEEBCC-----
T ss_pred EEEEEcccccccc
Confidence 4679999999983
No 8
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=7.91 E-value=95 Score=28.72 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=9.4
Q ss_pred cEEEEEeecccCCCee
Q 024227 160 GVTFIAEQVSHHPPMS 175 (270)
Q Consensus 160 ~~~fiaEQVSHHPPIs 175 (270)
+..+| |+|||++-
T Consensus 61 ~adlI---ItHHPlif 73 (370)
T 2nyd_A 61 GYNTI---ISHHPLIF 73 (370)
T ss_dssp TCCEE---EESSCSSC
T ss_pred CCCEE---EECCCccc
Confidence 45565 69999973
No 9
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=7.60 E-value=1e+02 Score=26.81 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=9.6
Q ss_pred CcEEEEEeecccCCCee
Q 024227 159 GGVTFIAEQVSHHPPMS 175 (270)
Q Consensus 159 ~~~~fiaEQVSHHPPIs 175 (270)
.+..+| |+|||++-
T Consensus 58 ~gadlI---itHHP~~f 71 (267)
T 2fyw_A 58 KGVDLI---IVKHAPIF 71 (267)
T ss_dssp TTCSEE---EESSCSCC
T ss_pred CCCCEE---EECCcccc
Confidence 345555 69999973
No 10
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=7.57 E-value=88 Score=29.59 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=0.0
Q ss_pred CCCCcchheehh
Q 024227 7 KQGGGFFASIAA 18 (270)
Q Consensus 7 ~~~~~~~~~~~~ 18 (270)
+.+|||||||++
T Consensus 72 ~~~~~~~~s~~~ 83 (422)
T 1pk8_A 72 SGGGGFFSSLSN 83 (422)
T ss_dssp ------------
T ss_pred CCCcchhhHHHH
Confidence 345779999973
Done!