BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024228
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 48 VVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDR---TASFQAECM 102
V+L+H G W+ + AL+K Y V PD + FG TDRP+ + + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV 146
+ L +EK +VG S+GG + A Y + V+ MV+ +V
Sbjct: 86 IGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAV 129
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 78/215 (36%), Gaps = 55/215 (25%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKT---YEVYVPDFLFFGSSVT------DRPDR 93
+ + ++ L H + F W L + Y VY PD+ FG S + DR D
Sbjct: 25 SNRRSIALFHGYSFTS-XDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGD- 82
Query: 94 TASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESV 153
AE + L+ GV + + G S GG YPD+V+ ++
Sbjct: 83 -LKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAVAP-------- 133
Query: 154 SNAALERIGYESWVDFLLPKTADALKVQFDIACYKLPTLPAFVYKHILEKIHLLWGENDK 213
+WV+ L K I +K L+WG D
Sbjct: 134 -----------AWVESLKGDX-----------------------KKIRQKTLLVWGSKDH 159
Query: 214 IFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 248
+ + +++ + + +E +E +GH V +E+P
Sbjct: 160 VVPIALSKEYASII-SGSRLEIVEGSGHPVYIEKP 193
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 48 VVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDR---TASFQAECM 102
V+L+H G W+ + AL+K Y V PD + FG TDRP+ + + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+ L +EK +VG ++GG + A Y + V+ MV+
Sbjct: 86 IGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVL 125
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 45 KHAVVLLHPFGFDGILTWQFQVLALAKTY-----EVYVPDFLFFGSS--VTDRPDRTASF 97
+H + LH G +W F + + V PD FG S TD T F
Sbjct: 46 EHTFLCLH-----GEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGF 100
Query: 98 QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAA 157
+ L L +E+ TLV +GG++G + P LV+ ++V + + + S
Sbjct: 101 HRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGK-- 158
Query: 158 LERIGYESWVDFL 170
G+ESW DF+
Sbjct: 159 ----GFESWRDFV 167
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 41 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 97
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 98 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 156
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 157 KANPVFDYQLYFQEPGVAEA 176
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 56 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 112
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 113 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 171
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 172 KANPVFDYQLYFQEPGVAEA 191
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
AV L H F + +W++Q+ ALA+ Y V D +G S P + E + K
Sbjct: 260 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSA--PPEIEEYCMEVLCKE 316
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERI 161
L KLG+ + +G +GGM+ + MA YP+ V + V + + + + + + LE I
Sbjct: 317 MVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRA-VASLNTPFIPANPNMSPLESI 375
Query: 162 GYESWVDFLL----PKTADA 177
D+ L P A+A
Sbjct: 376 KANPVFDYQLYFQEPGVAEA 395
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 34/251 (13%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD----RPDRTASFQ 98
+ + +VL H FG D W + + Y V + D + GS D R T
Sbjct: 18 SGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY 76
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + L LG++ C VG S M+G + P+L ++ + S L + +
Sbjct: 77 VDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGG 136
Query: 158 LER-----------IGYESWVDFLLPKT--AD--ALKVQFDIACYKL-PTLPAFVYKHIL 201
E+ YE+WV+ P AD A +F + + P + FV + +
Sbjct: 137 FEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVF 196
Query: 202 EK------------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPF 249
H+ D VA LK +G T+ + GHL +L P
Sbjct: 197 NSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIEGHLPHLSAPT 256
Query: 250 VYNRQLKTILA 260
+ ++L+ L+
Sbjct: 257 LLAQELRRALS 267
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 34/251 (13%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD----RPDRTASFQ 98
+ + +VL H FG D W + + Y V + D + GS D R T
Sbjct: 18 SGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY 76
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + L LG++ C VG + M+G + P+L ++ + S L + +
Sbjct: 77 VDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGG 136
Query: 158 LER-----------IGYESWVDFLLPKT--AD--ALKVQFDIACYKL-PTLPAFVYKHIL 201
E+ YE+WV+ P AD A +F + + P + FV + +
Sbjct: 137 FEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVF 196
Query: 202 EK------------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPF 249
H+ D VA LK +G T+ + GHL +L P
Sbjct: 197 NSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIEGHLPHLSAPT 256
Query: 250 VYNRQLKTILA 260
+ ++L+ L+
Sbjct: 257 LLAQELRRALS 267
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 38/262 (14%)
Query: 33 ILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--- 89
ILN+ V + + VVL H FG D W + L + + V + D + GS D
Sbjct: 7 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 63
Query: 90 --RPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSV 146
R D ++ + +A L L + +C VG S M+G + PDL +V + S
Sbjct: 64 FRRYDNLDAYVDDLLAI-LDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASP 122
Query: 147 MGLTESVSNAA--LERI---------GYESWVDFLLPKTADA-------------LKVQF 182
L +S + LE I Y +W P A ++
Sbjct: 123 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRP 182
Query: 183 DIACYKLPTLPAFVYKHILEKIH----LLWGENDKIFDMQVARNLKEQVGQNATMESIEK 238
DI+ + T+ + +L + ++ D VA LK +G T+E ++
Sbjct: 183 DISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQT 242
Query: 239 AGHLVNLERPFVYNRQLKTILA 260
GHL +L P + + L+ LA
Sbjct: 243 EGHLPHLSAPSLLAQVLRRALA 264
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 38/262 (14%)
Query: 33 ILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--- 89
ILN+ V + + VVL H FG D W + L + + V + D + GS D
Sbjct: 9 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 65
Query: 90 --RPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSV 146
R D ++ + +A L L + +C VG S M+G + PDL +V + S
Sbjct: 66 FRRYDNLDAYVDDLLAI-LDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASP 124
Query: 147 MGLTESVSNAA--LERI---------GYESWVDFLLPKTADA-------------LKVQF 182
L +S + LE I Y +W P A ++
Sbjct: 125 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRP 184
Query: 183 DIACYKLPTLPAFVYKHILEKIH----LLWGENDKIFDMQVARNLKEQVGQNATMESIEK 238
DI+ + T+ + +L + ++ D VA LK +G T+E ++
Sbjct: 185 DISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQT 244
Query: 239 AGHLVNLERPFVYNRQLKTILA 260
GHL +L P + + L+ LA
Sbjct: 245 EGHLPHLSAPSLLAQVLRRALA 266
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV--TDRPDRTASFQAECMAK 104
A++LLH F + W LA Y V D +G S PD A++ MA
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDH-ANYSFRAMAS 84
Query: 105 G----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+R LG E+ LVG + GG G +MA +PD V S+ V
Sbjct: 85 DQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAV 126
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 125 VGFKMAEMYPDLVESMVV 142
+G +M YP++ M+
Sbjct: 107 IGIEMIARYPEMRGLMIT 124
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV--TDRPDRTASFQAECMAK 104
A++LLH F + W LA Y V D +G S PD A++ MA
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDH-ANYSFRAMAS 84
Query: 105 G----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+R LG E+ LVG GG G +MA +PD V S+ V
Sbjct: 85 DQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAV 126
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 125 VGFKMAEMYPDLVESMVV 142
+G +M YP++ M+
Sbjct: 107 IGIEMIARYPEMRGLMIT 124
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAE 100
+ + +VL H FG D + W+ V L Y V + D + G++ D DR ++ +
Sbjct: 15 SGEATIVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGY 73
Query: 101 C--MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM----------G 148
+ L L +E C VG S M+G + PDL +V+ + G
Sbjct: 74 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGG 133
Query: 149 LTESVSNAALE--RIGYESWVDFLLPKTA----DALKVQ-FDIACYKL-PTLPAFVYKHI 200
+ N E R Y++W P D++ VQ F + + P + V + I
Sbjct: 134 FEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTI 193
Query: 201 LEK------------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 248
+ H+L D + V+ L +G + +E I GHL L P
Sbjct: 194 FQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSP 253
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAE 100
+ + +VL H FG D + W+ V L Y V + D + G++ D DR ++ +
Sbjct: 17 SGEATIVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGY 75
Query: 101 C--MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM----------G 148
+ L L +E C VG S M+G + PDL +V+ + G
Sbjct: 76 SFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGG 135
Query: 149 LTESVSNAALE--RIGYESWVDFLLPKTA----DALKVQ-FDIACYKL-PTLPAFVYKHI 200
+ N E R Y++W P D++ VQ F + + P + V + I
Sbjct: 136 FEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTI 195
Query: 201 LEK------------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 248
+ H+L D + V+ L +G + +E I GHL L P
Sbjct: 196 FQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSP 255
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 35/235 (14%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTD--RPDRTASFQAEC--MA 103
+VL H FG D + W+ V L Y V + D + G++ D DR ++ + +
Sbjct: 38 IVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLI 96
Query: 104 KGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM----------GLTESV 153
L L +E C VG S M+G + PDL +V+ + G +
Sbjct: 97 AILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQED 156
Query: 154 SNAALE--RIGYESWVDFLLPKTA----DALKVQ-FDIACYKL-PTLPAFVYKHILEK-- 203
N E R Y++W P D++ VQ F + + P + V + I +
Sbjct: 157 LNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDM 216
Query: 204 ----------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 248
H+L D + V+ L +G + +E I GHL L P
Sbjct: 217 RQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSP 271
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 47 AVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKG 105
A+ L H F + +W++Q+ ALA+ + V D +G S + P + E + K
Sbjct: 258 ALCLCHGFP-ESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSS--PPEIEEYAMELLCKE 314
Query: 106 ----LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L KLG+ + +G + G++ + MA YP+ V ++
Sbjct: 315 MVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVA 354
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 69 LAKTYEVYVPDFLFFGSSVTD--RPDRTASFQ--AECMAKGLRKLGVEKCTLVGVSYGGM 124
+ K + V PD G S TD PDR+ S + A+ M + +++LG+ + G GG
Sbjct: 48 IGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWGLGGH 106
Query: 125 VGFKMAEMYPDLVESMVV 142
+G +M YP++ M+
Sbjct: 107 IGIEMIARYPEMRGLMIT 124
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 86/239 (35%), Gaps = 34/239 (14%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPD----RTASFQ 98
T + L H FG D W + + Y V + D + GS D D T
Sbjct: 17 TGDRILFLAHGFGTDQS-AWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLDPY 75
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV-VTCSVMGLTESVSNAA 157
+ + + LG++ C VG S M+G + P+L ++ + S L + +
Sbjct: 76 VDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFLNDEDYHGG 135
Query: 158 LER-----------IGYESWVDFLLPKT--AD--ALKVQFDIACYKL-PTLPAFVYKHIL 201
E YE+WV P AD A +F + + P + FV + +
Sbjct: 136 FEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRPDISLFVSRTVF 195
Query: 202 EK------------IHLLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERP 248
++ D VA L+ +G + T+E+++ GHL L P
Sbjct: 196 NSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEGHLPQLSAP 254
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 48 VVLLHPFGFDGIL-TWQFQVLALAKTYEVYVPDFLFFGSS----VTDRPDRTASFQAECM 102
++LLH G+ G W + LA+ Y+V VPD FG S + D + A+
Sbjct: 32 LLLLH--GWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQ 89
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
A L LG+EK +VG + +V K Y D V
Sbjct: 90 AALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRV 124
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 206 LLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNRQLKT 257
++WG D + N TME+IE GH + +E+P + ++KT
Sbjct: 240 MIWGLGDTCVPYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAIDRIKT 291
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 35 NIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRT 94
NIW K +VLLH +G + + W+ L+ + +++ D FG R
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG-----RSRGF 56
Query: 95 ASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
+ MA+ + + +K +G + GG+V ++A +P+ V+++V S
Sbjct: 57 GALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVAS 107
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYE-SWVDF 169
V LVG S GG+V +A +YPDL++ +V+ L + + Y +
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177
Query: 170 LLPKTADALKVQFDIACYKLPTLPAFVYKHILEKIHLLWGENDKIFDMQVARNLKEQVGQ 229
LP L + +LP V + + L+ G +D + ++ +Q+ Q
Sbjct: 178 RLPFKDLTLGGFYLRIAQQLPIYE--VSAQFTKPVCLIHGTDDTVVSPNASKKY-DQIYQ 234
Query: 230 NATMESIEKAGHL---------VNLERPFVYNRQ 254
N+T+ IE A H VNL F+ N
Sbjct: 235 NSTLHLIEGADHCFSDSYQKNAVNLTTDFLQNNN 268
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 31 GTILNIWVPKKTTKKHAVVLLHPFG--FDGILTWQFQVLALAKTYEVYVPDFLFFGSSVT 88
GT+ + + + AVVLLH G W+ + LA+ + V PD + FG S
Sbjct: 15 GTLASHALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEY 74
Query: 89 DR--PDRTASF---QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVT 143
P S+ + E + + G+EK +VG S GG V ++ P+ + + +
Sbjct: 75 PETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALM 134
Query: 144 CSV 146
SV
Sbjct: 135 GSV 137
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L G SYGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKEX-------NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 83 FGSSVTDRPDR---TASFQAECMAKGLRK--LGVEKCTLVGVSYGGMVGFKMAEMYPDLV 137
FG ++ PD+ T + E A+ LR G EK L+G +YGG + A Y D +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHL 122
Query: 138 ESMVVTCSVMGLTESVSNAALERIGYESWVDFLLPKTADALKVQFDIACYKLP----TLP 193
+ ++V+ + + +V + R+ +D L K DA+K Y+ P +
Sbjct: 123 KGLIVSGGLSSVPLTVKE--MNRL-----IDELPAKYRDAIKKYGSSGSYENPEYQEAVN 175
Query: 194 AFVYKHIL 201
F ++H+L
Sbjct: 176 YFYHQHLL 183
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 35 NIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRT 94
NIW K +VLLH +G + + W+ L+ + +++ D FG R+
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG--------RS 53
Query: 95 ASFQAECMA---KGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
F A +A + + + +K +G S GG+V ++A +P+ V ++V S
Sbjct: 54 RGFGALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 61 TWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVE-KCTLVGV 119
W+ + LA+ Y V D L FG + + T + + ++ + + K ++VG
Sbjct: 54 NWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 120 SYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGY----ESWVDFLLPKTA 175
S GG G ++ ++ +LV ++V+ S GL + I Y E V + T
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSA-GLVVEIHEDLRPIINYDFTREGMVHLVKALTN 172
Query: 176 DALKVQ 181
D K+
Sbjct: 173 DGFKID 178
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYE-SWVDF 169
V LVG + GG+V +A +YPDL++ +V+ L + + Y +
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177
Query: 170 LLPKTADALKVQFDIACYKLPTLPAFVYKHILEKIHLLWGENDKIFDMQVARNLKEQVGQ 229
LP L + +LP V + + L+ G +D + ++ +Q+ Q
Sbjct: 178 RLPFKDLTLGGFYLRIAQQLPIYE--VSAQFTKPVCLIHGTDDTVVSPNASKKY-DQIYQ 234
Query: 230 NATMESIEKAGHL---------VNLERPFVYNRQ 254
N+T+ IE A H VNL F+ N
Sbjct: 235 NSTLHLIEGADHCFSDSYQKNAVNLTTDFLQNNN 268
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDR-PDRTASFQAECMAKGL 106
+VL + G D + W QV AL+K + V D G S + P + + GL
Sbjct: 29 IVLSNSLGTD-LSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPYTIEQLTGDVL--GL 85
Query: 107 RK-LGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV--TCSVMGLTES-VSNAALERI- 161
L + + G+S GG+ G +A + D +E + + T + +G E V A R
Sbjct: 86 XDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTE 145
Query: 162 GYESWVDFLLPK--TAD 176
G + D +LP+ TAD
Sbjct: 146 GXHALADAVLPRWFTAD 162
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAKG 105
V+ LH G + TW ++ L + D G S R D S Q +E +A
Sbjct: 84 VIFLHGGGQN-AHTWDTVIVGLGEP--ALAVDLPGHGHSAW-REDGNYSPQLNSETLAPV 139
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALER 160
LR+L +VG+S GG+ ++A M PDLV +V+ V+ +AL+R
Sbjct: 140 LRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLV--------DVTPSALQR 186
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNAXL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 111 VEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNAALERIGYE-SWVDF 169
V LVG + GG+V +A +YPDL++ +V+ L + + Y +
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177
Query: 170 LLPKTADALKVQFDIACYKLPTLPAFVYKHILEKIHLLWGENDKIFDMQVARNLKEQVGQ 229
LP L + +LP V + + L+ G +D + ++ +Q+ Q
Sbjct: 178 RLPFKDLTLGGFYLRIAQQLPIYE--VSAQFTKPVCLIHGTDDTVVSPNASKKY-DQIYQ 234
Query: 230 NATMESIEKAGH 241
N+T+ IE A H
Sbjct: 235 NSTLHLIEGADH 246
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGWTAW 175
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAALERI------GYESW 166
P + +++ + + +T+ V+ A G+ +W
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAFSAFVTQPADGFTAW 175
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 LTWQFQVLALAKTYEVYVPDFLFFGSSVT---DRPDRTASFQAECMAKGLRKLGVEKCTL 116
L W LA+ Y V + D +G S + D + + A + + +LG E+ +
Sbjct: 45 LAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQLETMGQLGFERFAV 104
Query: 117 VGVSYGGMVGFKMAEMYPDLVESMV 141
+G G VG+++A +P V + V
Sbjct: 105 IGHDRGARVGYRLALDHPQAVAAFV 129
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 75 VYVPDFLFFGSS--VTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEM 132
V PDF FG S D D T F + + +L + TLV +GG +G +
Sbjct: 77 VIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMA 136
Query: 133 YPDLVESMVVTCSVMGLTESVSNAAL 158
P + +++ + + +T+ V+ A
Sbjct: 137 DPSRFKRLIIMNACL-MTDPVTQPAF 161
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 41/240 (17%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFF-GSSVTDRPDRTASFQAECMAKGL 106
+VLLH F W + + Y Y D + S+ + T + A +
Sbjct: 70 LVLLHGALFSST-XWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVF 128
Query: 107 RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV--------------MGLTES 152
LG+EK +G+S GG+ P+ V+S + +GLT S
Sbjct: 129 DNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFLPFHHDFYKYALGLTAS 188
Query: 153 VSNAALERIGYESWVDF-------LLPKTADALKVQF---DIACYKLPTLPAFVYKHILE 202
G E+++++ L P K D + P F Y E
Sbjct: 189 N--------GVETFLNWXXNDQNVLHPIFVKQFKAGVXWQDGSRNPNPNADGFPYVFTDE 240
Query: 203 KIH-------LLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLERPFVYNRQL 255
++ LL GE++ I+D A + + E I+ AGH+++ E+P N ++
Sbjct: 241 ELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSXEQPTYVNERV 300
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 38 VPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTA- 95
PKK + ++L H F TW+ + LA Y V D + F S +P
Sbjct: 40 APKKANGR-TILLXHGKNF-CAGTWERTIDVLADAGYRVIAVDQVGFCKS--SKPAHYQY 95
Query: 96 SFQ--AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSV 146
SFQ A L +LGV + +++G S GG + + A +YP VE +V+ +
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query: 21 MTQRTIEIEPGTILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDF 80
+RT+E+E TI + V+ LH L +A Y PD
Sbjct: 9 FAKRTVEVEGATIAYV----DEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDL 64
Query: 81 LFFGSSVTDRPDRTASFQAECMAKG--LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVE 138
+ G S +PD Q + LG++ LV +G ++G + A + PD V
Sbjct: 65 IGXGDSA--KPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRV- 121
Query: 139 SMVVTCSVMGLTESVSNAALERIGYESWVDFLLP-----KTAD 176
+ + E++ AL YE+ L P +TAD
Sbjct: 122 ------AAVAFXEALVPPALPXPSYEAXGPQLGPLFRDLRTAD 158
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAEC--MAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAEC--MAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 45 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 102
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 103 DWGSALGFHWAKRNPERVKGIA 124
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAEC--MAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESM 140
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGI 126
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESM 140
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGI 126
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAEC--MAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 45 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 102
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 103 DWGSALGFHWAKRNPERVKGIA 124
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + LG+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESMV 141
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGIA 127
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSY 121
W Q+ AL + + V D G+S T + E + + L L V + +G+S
Sbjct: 43 WDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSL 102
Query: 122 GGMVGFKMAEMYPDLVESMVVT 143
GG+VG +A P +E +V+
Sbjct: 103 GGIVGQWLALHAPQRIERLVLA 124
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 62 WQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASF--QAECMAKGLRKLGVEKCTLVGV 119
W+ + +A ++ PD + G S D+PD F + + +G+E+ LV
Sbjct: 48 WRNIIPHVAPSHRCIAPDLIGMGKS--DKPDLDYFFDDHVRYLDAFIEAVGLEEVVLVIH 105
Query: 120 SYGGMVGFKMAEMYPDLVESM 140
+G +GF A+ P+ V+ +
Sbjct: 106 DWGSALGFHWAKRNPERVKGI 126
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 39 PKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSV-TDRPDRTASF 97
P VVL+ G G W Q+ L + Y+V D G++ T D + +
Sbjct: 9 PPPYADAPVVVLISGLGGSGSY-WLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQ 67
Query: 98 QAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMG 148
A + + L G+E +VG + G +VG ++A YP S+ V SV G
Sbjct: 68 XAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYP---ASVTVLISVNG 115
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 43 TKKHAVVLLHPFGFDGILTWQFQVLALA-KTYEVYVPDFLFFGSS-----VTDRPDRTAS 96
+ +H VVL + L WQ L LA + Y V PD G S VT T
Sbjct: 23 SPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLT-- 80
Query: 97 FQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVSNA 156
F A+ + + +++L + LVG S G M+ +A + P ++ +++ + ES +
Sbjct: 81 FLAQ-IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKES 139
Query: 157 ALERI 161
A+ ++
Sbjct: 140 AVNQL 144
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 84 GSSVTDRPDR--TASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
G ++D+P+ A+ A+ +A +R L LVG S G A YPDLV S+V
Sbjct: 104 GHGLSDKPETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV 163
Query: 142 V 142
Sbjct: 164 A 164
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 45 KHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQAECMAK 104
+ AV+LLH F + +K Y + P ++ G V P+ F E +
Sbjct: 15 ERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAP--IYSGHGVP--PEALTRFGPEAWWQ 70
Query: 105 G-------LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM 147
L+ G EK + G+S GG+ K+ P +E +V C+ M
Sbjct: 71 DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPM 118
>pdb|2VC2|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
pdb|3FCU|B Chain B, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|D Chain D, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|F Chain F, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
Length = 461
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|3NID|B Chain B, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|D Chain D, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
Length = 471
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLKE-QVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|1TYE|B Chain B, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|D Chain D, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|F Chain F, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 440
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 472
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 160 RIGYESWVD-------FLLPKTADALKVQFDIACYKLPT--LPAFVYKHILEKIHLLWGE 210
RIG+ ++VD ++ P A + CY + T LP F YKH+L +
Sbjct: 150 RIGFGAFVDKPVSPYMYISPPEA------LENPCYDMKTTCLPMFGYKHVLTLTDQVTRF 203
Query: 211 NDKIFDMQVARNLK-EQVGQNATMESI---EKAGHLVNLERPFVYNRQLKTILA 260
N+++ V+RN + G +A M++ EK G + V+ KT +A
Sbjct: 204 NEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 97 FQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
F A C A LG+E+ ++G S+GGM+G ++A P + S+ + S
Sbjct: 116 FHAVCTA-----LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNS 159
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAK 104
VVLLH F + +W+ Q+ ALA Y V D +G S R + + +
Sbjct: 36 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 94
Query: 105 GLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L G E+ +VG +G V + A ++PD +V
Sbjct: 95 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASFQ--AECMAK 104
VVLLH F + +W+ Q+ ALA Y V D +G S R + + +
Sbjct: 30 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 88
Query: 105 GLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
L G E+ +VG +G V + A ++PD +V
Sbjct: 89 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 40 KKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQA 99
++ T A++LL + D + +++ + L + V VP++ G S ++ PD Q
Sbjct: 22 QRDTDGPAILLLPGWCHDHRV-YKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQV 80
Query: 100 ECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAE 131
+ + L +LGVE V S+GG V ++ E
Sbjct: 81 KDALEILDQLGVETFLPVSHSHGGWVLVELLE 112
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 40 KKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQA 99
++ T A++LL + D + +++ + L + V VP++ G S ++ PD Q
Sbjct: 25 QRDTDGPAILLLPGWCHDHRV-YKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQV 83
Query: 100 ECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAE 131
+ + L +LGVE V S+GG V ++ E
Sbjct: 84 KDALEILDQLGVETFLPVSHSHGGWVLVELLE 115
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 40/193 (20%)
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV----------------V 142
A+ + L L ++K T +G S GG + + PD ++ +V +
Sbjct: 68 AQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEI 127
Query: 143 TCSVMGLTESVSN-----AALER--IGYESWVDFLLPKTADALKVQFDIACYKLPTLPAF 195
++ ++ES + AA+ R + E + FLL D + +F++ P L
Sbjct: 128 FAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDG-EWRFNV-----PVL-WD 180
Query: 196 VYKHIL--EKIH-------LLWGENDKIFDMQVARNLKEQVGQNATMESIEKAGHLVNLE 246
Y HI+ EKI + G N Q +L Q Q A I AGH V+ E
Sbjct: 181 QYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQ-ARAHVIAGAGHWVHAE 239
Query: 247 RPFVYNRQLKTIL 259
+P R ++ L
Sbjct: 240 KPDAVLRAIRRYL 252
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 48 VVLLHPFGFDGILTW---QFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECM 102
VVLLH G G +W + LA+ + V D +G S D+ F A
Sbjct: 59 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 115
Query: 103 AKGL-RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
KGL +LG+ + LVG S GG + A YP +V+
Sbjct: 116 LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVL 156
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 46 HAVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASF---QAEC 101
HAV+LL G + Q+ L K + V D +G S D A F A+
Sbjct: 24 HAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKD 83
Query: 102 MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVS 154
++ L +K +L+G S GG+ A YP + MV+ + +T+ S
Sbjct: 84 AVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 46 HAVVLLHPFGFDGILTWQFQVLALAKT-YEVYVPDFLFFGSSVTDRPDRTASF---QAEC 101
HAV+LL G + Q+ L K + V D +G S D A F A+
Sbjct: 24 HAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKD 83
Query: 102 MAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVMGLTESVS 154
++ L +K +L+G S GG+ A YP + MV+ + +T+ S
Sbjct: 84 AVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 66 VLALAKTYEVYV------PDFLFFGSSVTDRPDRTASFQAECMAKGLRK 108
VLA+ K V PDF F ++ D+P A FQ C G++K
Sbjct: 37 VLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQRICDKSGIKK 85
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 48 VVLLHPFGFDGILTW---QFQVLALAKTYEVYVPDFLFFGSSVTDRPDRTASFQ--AECM 102
VVLLH G G +W + LA+ + V D +G S D+ F A
Sbjct: 39 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 95
Query: 103 AKGL-RKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
KGL +LG+ + LVG + GG + A YP +V+
Sbjct: 96 LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVL 136
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 75 VYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYP 134
VYV + F S D P+ + L G K LVG S GG+ +A + P
Sbjct: 44 VYVANLSGFQSD--DGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAP 101
Query: 135 DLVESMVV 142
DLV S+
Sbjct: 102 DLVASVTT 109
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 75 VYVPDFLFFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYP 134
VYV + F S D P+ + L G K LVG S GG+ +A + P
Sbjct: 44 VYVANLSGFQSD--DGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAP 101
Query: 135 DLVESMVV 142
DLV S+
Sbjct: 102 DLVASVTT 109
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 19/142 (13%)
Query: 22 TQRTIEIEPGTILNIWVPKKTTKKHAVVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFL 81
TQR + N P TT+ AV P+G + Q + A Y ++ F+
Sbjct: 42 TQRQYYLLERRFWNADAPSXTTRTCAVPT--PYGDVTTRLYSPQPTSQATLYYLHGGGFI 99
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMV 141
DR R + R G CT++G+ Y YP +E V
Sbjct: 100 LGNLDTHDRIXRLLA----------RYTG---CTVIGIDYS----LSPQARYPQAIEETV 142
Query: 142 VTCSVMGLTESVSNAALERIGY 163
CS + +E+IG+
Sbjct: 143 AVCSYFSQHADEYSLNVEKIGF 164
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCSVM 147
L+ G EK + G+S GG+ K+ P +E +V C+ M
Sbjct: 80 LKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPM 119
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 106 LRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVVTCS 145
L+ G EK + G+S GG+ K+ P +E +V C+
Sbjct: 80 LKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTXCA 117
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 48 VVLLHPFGFDGILTWQFQVLALAKTYEVYVPDFLFFG-----SSVTDRPDRTASFQAECM 102
++LLH + ++ W LA + V D +G +SV + + A+
Sbjct: 28 LLLLHGYPQTHVM-WHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQ 86
Query: 103 AKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESMVV 142
+ + KLG E+ +VG G V ++A +P V+ + +
Sbjct: 87 VEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLAL 126
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG S GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 132 MYPDLVESMVV 142
YPD + +++
Sbjct: 124 EYPDRIGKLIL 134
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 73 YEVYVPDFLFFGSSVTDRPDRTASFQAECMAKGL-RKLGVEKCTLVGVSYGGMVGFKMAE 131
Y V + D F S D KGL L +++ LVG S GG A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 132 MYPDLVESMVV 142
YPD + +++
Sbjct: 124 EYPDRIGKLIL 134
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYG 122
F G T + DR+A++ A +AK L K G+ + LV VSY
Sbjct: 271 FSGKDYT-KVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 310
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 82 FFGSSVTDRPDRTASFQAECMAKGLRKLGVEKCTLVGVSYG 122
F G T + DR+A++ A +AK L K G+ + LV VSY
Sbjct: 283 FSGKDYT-KVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 322
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 45 KHAVVLLHPFG----FDGILTWQFQVLALAKTY--EVYVPDFLFFGSSVTDRPDRTASFQ 98
++ V+L+H F ++ + + + + +++ +VYV + F S D P+
Sbjct: 7 RYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD--DGPNGRGEQL 64
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESM 140
+ + L G K L+G S GG+ +A + P LV S+
Sbjct: 65 LAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASV 106
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 45 KHAVVLLHPFG----FDGILTWQFQVLALAKTY--EVYVPDFLFFGSSVTDRPDRTASFQ 98
++ V+L+H F ++ + + + + +++ +VYV + F S D P+
Sbjct: 8 RYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD--DGPNGRGEQL 65
Query: 99 AECMAKGLRKLGVEKCTLVGVSYGGMVGFKMAEMYPDLVESM 140
+ + L G K L+G S GG+ +A + P LV S+
Sbjct: 66 LAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASV 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,504,254
Number of Sequences: 62578
Number of extensions: 294677
Number of successful extensions: 948
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 105
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)