Query 024231
Match_columns 270
No_of_seqs 164 out of 743
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 1.9E-17 6.4E-22 134.8 7.4 93 174-266 17-114 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 5.6E-17 1.9E-21 124.2 4.1 58 185-242 7-64 (82)
3 4h10_B Circadian locomoter out 99.6 7.7E-16 2.6E-20 116.5 4.1 58 185-242 9-66 (71)
4 1an4_A Protein (upstream stimu 99.6 7.8E-16 2.7E-20 112.4 2.6 56 183-238 4-64 (65)
5 1a0a_A BHLH, protein (phosphat 99.5 4.7E-16 1.6E-20 114.4 0.7 54 185-238 3-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.5 2.2E-15 7.6E-20 114.1 0.9 53 183-235 8-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.4 1.2E-13 4.1E-18 105.1 6.6 55 187-242 5-61 (83)
8 1hlo_A Protein (transcription 99.4 1.2E-13 4.2E-18 104.7 6.4 57 186-242 14-71 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.4E-13 8.1E-18 105.6 6.6 56 187-242 9-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.8E-13 6.1E-18 104.3 4.9 57 186-242 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.4E-11 4.9E-16 94.3 7.0 56 187-242 4-61 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 4.6E-11 1.6E-15 89.3 2.6 52 186-237 14-66 (68)
13 4f3l_A Mclock, circadian locom 99.1 1.4E-10 4.7E-15 106.1 6.0 56 182-237 10-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.9 9.7E-10 3.3E-14 80.2 5.8 51 187-237 5-57 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 3E-10 1E-14 105.3 3.0 54 182-236 11-68 (387)
16 4ath_A MITF, microphthalmia-as 98.9 3.1E-09 1E-13 82.8 5.9 49 195-243 3-54 (83)
17 2lfh_A DNA-binding protein inh 98.5 4E-08 1.4E-12 74.0 2.0 47 189-235 19-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.6E-05 5.6E-10 63.3 6.8 49 192-240 33-83 (97)
19 3muj_A Transcription factor CO 38.9 39 0.0013 28.2 4.8 36 198-233 95-133 (138)
20 1m2x_A Class B carbapenemase B 36.5 19 0.00064 29.3 2.5 32 207-239 190-221 (223)
21 3p8c_D Wiskott-aldrich syndrom 33.4 8.9 0.0003 35.3 0.0 19 22-40 196-214 (279)
22 1f1f_A Cytochrome C6; heme, pr 32.4 95 0.0032 21.1 5.3 40 196-236 48-87 (89)
23 1a7t_A Metallo-beta-lactamase; 32.3 32 0.0011 28.2 3.3 32 207-239 200-231 (232)
24 2lqh_B Forkhead box O3, FOXO3A 35.0 12 0.0004 26.2 0.0 6 12-17 24-29 (52)
25 2fhx_A SPM-1; metallo-beta-lac 28.3 31 0.0011 28.2 2.5 31 207-238 215-245 (246)
26 1p3q_Q VPS9P, vacuolar protein 25.8 86 0.0029 22.2 4.1 26 190-215 3-28 (54)
27 3ph2_B Cytochrome C6; photosyn 25.2 1.5E+02 0.0052 19.8 5.3 38 198-236 47-84 (86)
28 1gdv_A Cytochrome C6; RED ALGA 24.5 1.6E+02 0.0055 19.6 5.3 37 198-235 46-82 (85)
29 1cyi_A Cytochrome C6, cytochro 24.0 1.6E+02 0.0055 20.1 5.3 39 196-235 46-84 (90)
30 2wt7_A Proto-oncogene protein 22.8 1.6E+02 0.0054 20.7 5.0 15 193-207 2-16 (63)
31 1c6r_A Cytochrome C6; electron 21.8 1.8E+02 0.0061 19.7 5.2 39 196-235 47-85 (89)
32 1gd2_E Transcription factor PA 21.4 49 0.0017 24.4 2.2 13 229-241 30-42 (70)
33 2y8b_A Metallo-B-lactamase; hy 21.2 26 0.00089 29.8 0.7 32 207-239 233-264 (265)
34 2jqq_A Conserved oligomeric go 20.6 89 0.003 27.7 4.0 46 194-241 51-96 (204)
35 3ng9_A Capsid protein; beta ba 20.2 33 0.0011 35.5 1.4 11 36-47 293-303 (736)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.70 E-value=1.9e-17 Score=134.84 Aligned_cols=93 Identities=27% Similarity=0.402 Sum_probs=52.6
Q ss_pred CccccccccCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhccCC--CC
Q 024231 174 PCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFLENS--PF 248 (270)
Q Consensus 174 p~k~rakRg~at~~HsiaERrRRerIneri~~Lr~LVP~~~K---q~DKAsIL~eAIdYIK~LQ~QVk~Le~l~~~--~~ 248 (270)
+++..+++++++.+|+++||+||++||++|.+|++|||.+.+ +++|++||+.||+||++||.+++.|...+.. ..
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l 96 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL 96 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888999999999999999999999999998853 4899999999999999999999999865432 22
Q ss_pred CCCCCCCcCcHHHHHHhh
Q 024231 249 GGSETGTHRASEEMQMLG 266 (270)
Q Consensus 249 ~g~~sG~~~~seem~~l~ 266 (270)
.....-....-+|++|+.
T Consensus 97 ~~~n~~L~~riqeLE~~a 114 (118)
T 4ati_A 97 EHANRHLLLRVQELEMQA 114 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 222223335556666543
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=5.6e-17 Score=124.22 Aligned_cols=58 Identities=29% Similarity=0.511 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 185 t~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
+.+|+++||+||++||++|.+|++|||+++.++||++||.+||+||++||.+++.|+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999855599999999999999999999999874
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=7.7e-16 Score=116.47 Aligned_cols=58 Identities=16% Similarity=0.377 Sum_probs=52.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 185 t~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
+.+|+++||+||++||++|.+|++|||....++||++||+.||+||+.||.++.=|+.
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 3469999999999999999999999998765599999999999999999999876653
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=7.8e-16 Score=112.36 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=50.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 024231 183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIE 238 (270)
Q Consensus 183 ~at~~HsiaERrRRerIneri~~Lr~LVP~~~K-----q~DKAsIL~eAIdYIK~LQ~QVk 238 (270)
..+..|+++||+||++||+.|.+|++|||.+.. +++|++||..||+||+.||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345679999999999999999999999998872 38999999999999999998753
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=4.7e-16 Score=114.44 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=48.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024231 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIE 238 (270)
Q Consensus 185 t~~HsiaERrRRerIneri~~Lr~LVP~~~K------q~DKAsIL~eAIdYIK~LQ~QVk 238 (270)
+.+|+++||+||++||..|..|+.|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999997632 36799999999999999998763
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=2.2e-15 Score=114.12 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=46.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhcccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 024231 183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQK 235 (270)
Q Consensus 183 ~at~~HsiaERrRRerIneri~~Lr~LVP~~~---Kq~DKAsIL~eAIdYIK~LQ~ 235 (270)
+++.+|+++||+||++||+.|.+|+.|||.+. .++|||+||+.||+||+.||.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 33457999999999999999999999999873 339999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=1.2e-13 Score=105.09 Aligned_cols=55 Identities=29% Similarity=0.578 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
.|+.+||+||+.||+.|..|+++||.+ .| ++|++||..||+||+.|+.+++.|+.
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999985 45 99999999999999999999998863
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=1.2e-13 Score=104.67 Aligned_cols=57 Identities=26% Similarity=0.540 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~~~-Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
..|+.+||+||..||+.|..|+.+||.+. .+++|++||..||+||+.||.+++.|+.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999873 2399999999999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2.4e-13 Score=105.64 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
.|+.+||+||+.||++|..|+++||.+. .+++|++||..||+||++|+.+.+.+..
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999863 3499999999999999999999988764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.40 E-value=1.8e-13 Score=104.29 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcccCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 186 HPRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~---~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
..|+..||+||..||+.|..|+.+||. .+|.++|.+||..||+||++||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999995 345347999999999999999999998874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=1.4e-11 Score=94.30 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (270)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~ 242 (270)
.|+..||+||..||+.|..|+++||.+. .+++|++||..|++||+.|+.+.+.|..
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999653 2389999999999999999999988874
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.06 E-value=4.6e-11 Score=89.34 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcccCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 024231 186 HPRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQI 237 (270)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~~-~Kq~DKAsIL~eAIdYIK~LQ~QV 237 (270)
..|+..||+|+..||+.|..|+.+||.. +++++|..+|..||+||++||..+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999964 345999999999999999999865
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=1.4e-10 Score=106.06 Aligned_cols=56 Identities=14% Similarity=0.385 Sum_probs=42.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 024231 182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237 (270)
Q Consensus 182 g~at~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QV 237 (270)
..++.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 33445799999999999999999999999954445999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.95 E-value=9.7e-10 Score=80.19 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024231 187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQI 237 (270)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QV 237 (270)
.|+..||+|+..||+.|..|+.+||.. +++++|..+|..||+||++||..+
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999975 346999999999999999999876
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.93 E-value=3e-10 Score=105.31 Aligned_cols=54 Identities=30% Similarity=0.351 Sum_probs=47.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhcccC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 024231 182 GCATHPRSIAERVRRTRISDRIRKLQDLVP----NMDKQTNTADMLEEAVEYVKFLQKQ 236 (270)
Q Consensus 182 g~at~~HsiaERrRRerIneri~~Lr~LVP----~~~Kq~DKAsIL~eAIdYIK~LQ~Q 236 (270)
+.++.+|+.+||+||++||+.|.+|+.||| ...| +||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 333457999999999999999999999999 4456 99999999999999999743
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.85 E-value=3.1e-09 Score=82.76 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 024231 195 RRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFL 243 (270)
Q Consensus 195 RRerIneri~~Lr~LVP~~~K---q~DKAsIL~eAIdYIK~LQ~QVk~Le~l 243 (270)
-|..||++|.+|..|||.+.. +++|++||..||+||++||++++.+...
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999997642 3899999999999999999988887754
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=74.00 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHH
Q 024231 189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQK 235 (270)
Q Consensus 189 siaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~ 235 (270)
+.-||+|...||+.|..||.+||.. +++++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3448899999999999999999975 3469999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.96 E-value=1.6e-05 Score=63.34 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024231 192 ERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVL 240 (270)
Q Consensus 192 ERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk~L 240 (270)
||.|=..||+-|..||.+||.. ++++.|..+|..||+||++||..++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778888999999999999965 456999999999999999999876543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=38.85 E-value=39 Score=28.24 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcccCCCC---CCCChhhHHHHHHHHHHHH
Q 024231 198 RISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFL 233 (270)
Q Consensus 198 rIneri~~Lr~LVP~~~---Kq~DKAsIL~eAIdYIK~L 233 (270)
-|.=.|..|+.+||... .++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 46788999999999653 3478999999999998876
No 20
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=36.51 E-value=19 Score=29.34 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=24.7
Q ss_pred hcccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024231 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239 (270)
Q Consensus 207 r~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~ 239 (270)
..++|+..... ....|+.+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 46788877755 467899999999999998854
No 21
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=33.42 E-value=8.9 Score=35.29 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCCCCcccccccCcHHH
Q 024231 22 RGELSRGGLARLRSAPASW 40 (270)
Q Consensus 22 ~~~~~~~~l~r~~s~pa~~ 40 (270)
||.+..+|+-+..|+|.-.
T Consensus 196 ~~~~~~~~~~~~~~~~p~~ 214 (279)
T 3p8c_D 196 GGSGGSGGSKRHPSTLPVI 214 (279)
T ss_dssp -------------------
T ss_pred CCCCCCCccccCCCCCCCc
Confidence 4444556888988887654
No 22
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=32.37 E-value=95 Score=21.13 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 024231 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (270)
Q Consensus 196 RerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~Q 236 (270)
++.|.+.|..-...||.....++... +.+.|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44555555555677887765466655 46789999998754
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=32.30 E-value=32 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=24.9
Q ss_pred hcccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024231 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239 (270)
Q Consensus 207 r~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~ 239 (270)
..++|+.....+ ..+++.+++||+.|.+++++
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 568888877444 57889999999999988753
No 24
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=35.01 E-value=12 Score=26.19 Aligned_cols=6 Identities=67% Similarity=1.514 Sum_probs=2.6
Q ss_pred CCCCCC
Q 024231 12 SGGGGG 17 (270)
Q Consensus 12 ~~~~~~ 17 (270)
+|||.|
T Consensus 24 dgggsg 29 (52)
T 2lqh_B 24 DGGGSG 29 (52)
Confidence 444443
No 25
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=28.25 E-value=31 Score=28.19 Aligned_cols=31 Identities=6% Similarity=0.228 Sum_probs=24.9
Q ss_pred hcccCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 024231 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIE 238 (270)
Q Consensus 207 r~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk 238 (270)
..++|+.....+ ...|.++++|++.|+.+|+
T Consensus 215 ~~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 215 KIVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp SEEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 457888777444 6789999999999999874
No 26
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.78 E-value=86 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCC
Q 024231 190 IAERVRRTRISDRIRKLQDLVPNMDK 215 (270)
Q Consensus 190 iaERrRRerIneri~~Lr~LVP~~~K 215 (270)
.++|-+|..-++-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46888888889999999999998776
No 27
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=25.18 E-value=1.5e+02 Score=19.80 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 024231 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (270)
Q Consensus 198 rIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~Q 236 (270)
.|...|+.-+..+|.....++...| ...+.||+.|..+
T Consensus 47 ~~~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 47 AITTVVTNGKAGMPAFKGRLTDDQI-AAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccCCCHHHH-HHHHHHHHHhhhc
Confidence 3444555555688877544666654 6788999998653
No 28
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=24.54 E-value=1.6e+02 Score=19.64 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 024231 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (270)
Q Consensus 198 rIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~ 235 (270)
.|.+.|+.-...+|.....++...| .+.+.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDEDI-EDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHHH-HHHHHHHHHHhh
Confidence 3444444444678877644665554 679999999875
No 29
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=24.01 E-value=1.6e+02 Score=20.09 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 024231 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (270)
Q Consensus 196 RerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~ 235 (270)
.+.|.+.|..-...+|.....++... +.+.|.||+.|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 84 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhccc
Confidence 34455555555577887765466655 5779999999876
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.80 E-value=1.6e+02 Score=20.66 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 024231 193 RVRRTRISDRIRKLQ 207 (270)
Q Consensus 193 RrRRerIneri~~Lr 207 (270)
|++|.+...++.+.+
T Consensus 2 kr~rrrerNR~AA~r 16 (63)
T 2wt7_A 2 KRRIRRERNKMAAAK 16 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHH
Confidence 333444444444443
No 31
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=21.78 E-value=1.8e+02 Score=19.74 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 024231 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (270)
Q Consensus 196 RerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~ 235 (270)
.+.|.+.|+.-...||.....++... +.+.|.||+.|..
T Consensus 47 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 47 LEAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 34455555555577887765466665 4678999999875
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.41 E-value=49 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 024231 229 YVKFLQKQIEVLH 241 (270)
Q Consensus 229 YIK~LQ~QVk~Le 241 (270)
||+.|+.+|..|+
T Consensus 30 ~i~~LE~~v~~le 42 (70)
T 1gd2_E 30 HLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 33
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=21.25 E-value=26 Score=29.76 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=19.3
Q ss_pred hcccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024231 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239 (270)
Q Consensus 207 r~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~ 239 (270)
..++|+.....+ ...++.+.+|++.++.+|++
T Consensus 233 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~v~~ 264 (265)
T 2y8b_A 233 EVVIPGHGLPGG-LELLQHTTNVVKTHKVRPVA 264 (265)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHC--------
T ss_pred CEEECCCCCCCC-HHHHHHHHHHHHHHHHHhhc
Confidence 568898887444 57899999999999998864
No 34
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.60 E-value=89 Score=27.67 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024231 194 VRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241 (270)
Q Consensus 194 rRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le 241 (270)
+-|.-++.=...|+.|+-..- .++-.++.+||+|+|.|-.-+..|.
T Consensus 51 ~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888865333 4788899999999999976655443
No 35
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=20.20 E-value=33 Score=35.49 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=5.6
Q ss_pred CcHHHHHHHhhh
Q 024231 36 APASWIDALLEE 47 (270)
Q Consensus 36 ~pa~~l~~l~~~ 47 (270)
+|-.|= .|+.+
T Consensus 293 SP~DwQ-~Lin~ 303 (736)
T 3ng9_A 293 SPRDWQ-RLINN 303 (736)
T ss_dssp CHHHHH-HHHHH
T ss_pred CHHHHH-HHHHh
Confidence 466664 34443
Done!