BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024232
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/258 (52%), Positives = 174/258 (67%), Gaps = 16/258 (6%)
Query: 6 PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
P T + S P H R+ LR AAR LR A RR+M REPS+ VRE
Sbjct: 40 PPTVTRTISVDEESNPIHRSARRQGLRE--------AARFLRHAGSRRMM-REPSMLVRE 90
Query: 66 TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
TAAEQLEERQS WAYS+P++ LD+LWNL FV + AVL +S +EKP +PLR+ +VGY +Q
Sbjct: 91 TAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQ 150
Query: 126 CLFHVFCVSLEFKRRRRG----EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLE 181
C H+ CV +E++RRRR +G G + S S E+R GE S+ AK+LE
Sbjct: 151 CWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDR--GET-SNPAKHLE 207
Query: 182 SANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIA 241
SANT SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC+IG+A
Sbjct: 208 SANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLA 267
Query: 242 VCCCLPCILGILYALTER 259
VCCCLPCI+ ILYA+ ++
Sbjct: 268 VCCCLPCIIAILYAVADQ 285
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/235 (54%), Positives = 167/235 (71%), Gaps = 18/235 (7%)
Query: 42 AARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFA 101
AARLLR AS R+M+REPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA A
Sbjct: 32 AARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATA 91
Query: 102 VLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161
VL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR S SSS++ +
Sbjct: 92 VLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSS 151
Query: 162 G-DEEE----------------RFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
DEEE + EN+S AK+LESANT +SF+WW++GFYW+++ G+
Sbjct: 152 SMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFYWVSSGGQ 210
Query: 205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTER 259
L SPQLYWLC+ FL FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+
Sbjct: 211 ELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ 265
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 163/252 (64%), Gaps = 24/252 (9%)
Query: 28 RRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVL 87
RR +RR LR AAR L RAS R+M REPS+ VRE AAEQLEERQS WAYS+P++VL
Sbjct: 48 RRSVRRQG--LR-EAARFLSRASSGRVM-REPSMLVREAAAEQLEERQSDWAYSKPVVVL 103
Query: 88 DVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVV 147
D++WNL FV VA A+L +S E P +PLR+ ++GYALQC+ H+ CV +E++RR R
Sbjct: 104 DIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNR 163
Query: 148 --------------------FGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFL 187
+ GS + D SSVAK+LESANT
Sbjct: 164 TTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223
Query: 188 SFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLP 247
SF+WWI+GFYW++A G+ L SP++YWL + FL FDV FV+ CV +AC+IGIAVCCCLP
Sbjct: 224 SFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLP 283
Query: 248 CILGILYALTER 259
CI+ +LYA+ ++
Sbjct: 284 CIIAVLYAVADQ 295
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 4/216 (1%)
Query: 41 AAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAF 100
A A LL R +G R PS+ VRETAA LEER+ W YS+P++ D+LWN V+ +
Sbjct: 38 ALAVLLGRITGHR----APSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASA 93
Query: 101 AVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTV 160
+L ++ E+P P+R+ I Y LQCLFHV V E+ RR +S
Sbjct: 94 VMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIE 153
Query: 161 TGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTF 220
E++ S K ES NT +SF+WWI+GFYW+ G+ L+ +P LYWL V F
Sbjct: 154 YDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIF 213
Query: 221 LAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAL 256
LA DV F + CV +ACL+GIA+CCCLPCI+ +LYA+
Sbjct: 214 LAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAV 249
>sp|Q32NM7|ILDR1_XENLA Immunoglobulin-like domain-containing receptor 1 OS=Xenopus laevis
GN=ildr1 PE=2 SV=1
Length = 545
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 190 LWWIVGFYWITASGETLISCSPQ-------LYWLCVTFLAFDVVFVMICVGV 234
+WW G Y+ + + S P L+WL V F+ +F+ + +G+
Sbjct: 133 MWWDHGVYFCSVEAQGDTSGDPDKEVKLVVLHWLTVLFIILGALFLFLLIGI 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,366,733
Number of Sequences: 539616
Number of extensions: 4093860
Number of successful extensions: 13305
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13295
Number of HSP's gapped (non-prelim): 13
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)