Query 024232
Match_columns 270
No_of_seqs 114 out of 127
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04505 Dispanin: Interferon- 87.4 0.16 3.6E-06 39.5 -0.1 17 241-257 26-43 (82)
2 COG3671 Predicted membrane pro 56.4 39 0.00085 28.9 6.1 48 213-260 69-116 (125)
3 PF02326 YMF19: Plant ATP synt 49.7 21 0.00046 28.2 3.3 32 211-256 10-41 (86)
4 COG4700 Uncharacterized protei 47.3 9.2 0.0002 35.7 1.1 10 211-220 25-34 (251)
5 PF02656 DUF202: Domain of unk 39.0 80 0.0017 23.2 4.8 46 92-137 17-65 (73)
6 PF05478 Prominin: Prominin; 37.8 33 0.00071 36.7 3.5 29 213-245 89-117 (806)
7 PF11712 Vma12: Endoplasmic re 37.6 74 0.0016 26.7 5.0 26 173-198 79-104 (142)
8 PTZ00201 amastin surface glyco 32.8 63 0.0014 29.3 4.1 18 228-245 84-102 (192)
9 PRK14010 potassium-transportin 32.6 61 0.0013 34.4 4.5 24 233-257 248-271 (673)
10 PF08372 PRT_C: Plant phosphor 32.3 2.5E+02 0.0054 24.7 7.5 59 174-236 55-116 (156)
11 MTH00169 ATP8 ATP synthase F0 31.7 85 0.0018 23.9 4.0 37 210-260 10-46 (67)
12 PF06814 Lung_7-TM_R: Lung sev 31.2 4.2E+02 0.0092 24.4 10.2 120 83-225 46-166 (295)
13 PF02932 Neur_chan_memb: Neuro 30.8 1.2E+02 0.0027 23.8 5.1 38 219-256 33-77 (237)
14 PF12273 RCR: Chitin synthesis 29.5 47 0.001 27.4 2.5 10 236-245 12-21 (130)
15 PF10601 zf-LITAF-like: LITAF- 28.9 52 0.0011 24.5 2.4 16 235-250 36-51 (73)
16 KOG4554 Protein involved in in 27.9 2.6E+02 0.0057 25.4 7.0 106 93-200 5-116 (185)
17 COG5065 PHO88 Protein involved 27.9 2.6E+02 0.0057 25.4 7.0 106 93-200 5-116 (185)
18 smart00714 LITAF Possible memb 26.7 62 0.0013 23.7 2.5 9 242-250 37-45 (67)
19 PF02411 MerT: MerT mercuric t 25.5 61 0.0013 27.1 2.5 20 236-255 17-36 (116)
20 PF07344 Amastin: Amastin surf 24.9 1.3E+02 0.0028 25.6 4.5 14 232-245 76-89 (155)
21 COG5524 Bacteriorhodopsin [Gen 22.9 3.4E+02 0.0074 26.3 7.2 98 74-202 105-215 (285)
22 PF02985 HEAT: HEAT repeat; I 22.8 41 0.00089 20.9 0.8 18 56-73 9-26 (31)
23 PF01534 Frizzled: Frizzled/Sm 22.2 4.3E+02 0.0093 25.6 7.9 27 106-132 38-64 (328)
24 PF05961 Chordopox_A13L: Chord 22.1 94 0.002 24.2 2.7 13 246-258 12-24 (68)
25 PHA03049 IMV membrane protein; 21.7 97 0.0021 24.1 2.7 10 249-258 15-24 (68)
26 PF13908 Shisa: Wnt and FGF in 21.0 31 0.00066 29.8 -0.1 7 220-226 79-85 (179)
27 PF11368 DUF3169: Protein of u 20.9 1.7E+02 0.0038 26.5 4.7 15 208-222 126-140 (248)
28 PF12326 EOS1: N-glycosylation 20.9 2.7E+02 0.0057 24.5 5.6 43 96-141 51-94 (148)
29 PF10028 DUF2270: Predicted in 20.7 1.6E+02 0.0035 26.8 4.4 56 64-140 10-65 (185)
No 1
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=87.43 E-value=0.16 Score=39.51 Aligned_cols=17 Identities=41% Similarity=1.191 Sum_probs=12.9
Q ss_pred HHHhhHH-HHHHHHHHhh
Q 024232 241 AVCCCLP-CILGILYALT 257 (270)
Q Consensus 241 alCCCLP-cIIaiLyava 257 (270)
.+|||+| -|+++.|+..
T Consensus 26 ~l~Cc~PlGi~Ai~~s~k 43 (82)
T PF04505_consen 26 TLCCCWPLGIVAIVYSSK 43 (82)
T ss_pred HHHHHhhHHHHHheechh
Confidence 3499999 4778888776
No 2
>COG3671 Predicted membrane protein [Function unknown]
Probab=56.39 E-value=39 Score=28.94 Aligned_cols=48 Identities=19% Similarity=0.518 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 024232 213 LYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERV 260 (270)
Q Consensus 213 LYwLCIvFLAFdv~fvv~cyalp~li~ialCCCLPcIIaiLyavadqe 260 (270)
=||+|+.+--.+.++..+..++..++...+-..+=|++.+.|-..||-
T Consensus 69 TFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~g~a 116 (125)
T COG3671 69 TFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNEGKA 116 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 367887777777777777778888888899999999999999998875
No 3
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=49.67 E-value=21 Score=28.18 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=20.8
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 024232 211 PQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAL 256 (270)
Q Consensus 211 PqLYwLCIvFLAFdv~fvv~cyalp~li~ialCCCLPcIIaiLyav 256 (270)
+|.+|+|+.|++|=++ ++ ...||-|..+|-.-
T Consensus 10 sQ~fW~~i~f~~~y~~---~~-----------~~~lP~i~~~lk~R 41 (86)
T PF02326_consen 10 SQYFWLLIFFFFFYIF---LV-----------NFILPKISRILKLR 41 (86)
T ss_pred HHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHH
Confidence 5789999998765443 22 33578776666443
No 4
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=47.29 E-value=9.2 Score=35.68 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=7.8
Q ss_pred cchHHHHHHH
Q 024232 211 PQLYWLCVTF 220 (270)
Q Consensus 211 PqLYwLCIvF 220 (270)
-++|||.|+|
T Consensus 25 qe~YWlfIif 34 (251)
T COG4700 25 QERYWLFIIF 34 (251)
T ss_pred chHHHHHHHH
Confidence 3588888887
No 5
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=38.95 E-value=80 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCC---chhhHHhhhhhhhHHHHHHHHHHh
Q 024232 92 NLVFVIVAFAVLGVSINEKPEV---PLRLRIVGYALQCLFHVFCVSLEF 137 (270)
Q Consensus 92 nLaqIVaAivVL~lSk~E~P~~---PLr~WIvGYa~gCv~hLplv~~rY 137 (270)
.++.++++++++-....+++.. .--..++|+.+-.+..+.+++..+
T Consensus 17 ~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (73)
T PF02656_consen 17 ALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLIYGIY 65 (73)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776554321 334568888888887777766533
No 6
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=37.76 E-value=33 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.917 Sum_probs=18.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024232 213 LYWLCVTFLAFDVVFVMICVGVACLIGIAVCCC 245 (270)
Q Consensus 213 LYwLCIvFLAFdv~fvv~cyalp~li~ialCCC 245 (270)
.||.-+++.++.++|+|+ || ++|+..|||
T Consensus 89 ~~~g~~v~~~i~ll~~il---~P-~vg~~fCcC 117 (806)
T PF05478_consen 89 YEWGFLVCAVIGLLFIIL---MP-LVGLCFCCC 117 (806)
T ss_pred HHHHHHHHHHHHHHHHHH---HH-HHHHHHhcc
Confidence 567767776666664433 44 456677877
No 7
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.56 E-value=74 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=20.3
Q ss_pred chHHHHHhHHHHHHHHHHHHhhheEe
Q 024232 173 DSSVAKNLESANTFLSFLWWIVGFYW 198 (270)
Q Consensus 173 ~~~i~k~lesalt~Ff~VWfVVGfyW 198 (270)
.+.+.+-+=+...+|+++||..+-.|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778888888999999997776555
No 8
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=32.81 E-value=63 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH-HHhh
Q 024232 228 VMICVGVACLIGIA-VCCC 245 (270)
Q Consensus 228 vv~cyalp~li~ia-lCCC 245 (270)
.++.|+.++++|+. +|||
T Consensus 84 SI~v~~aA~vlg~~~l~cc 102 (192)
T PTZ00201 84 SILVYGAAFVLGLVLLYGC 102 (192)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 34567888887665 4443
No 9
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=32.58 E-value=61 Score=34.42 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhh
Q 024232 233 GVACLIGIAVCCCLPCILGILYALT 257 (270)
Q Consensus 233 alp~li~ialCCCLPcIIaiLyava 257 (270)
.+++++.+++|.| ||-+..+..++
T Consensus 248 ~~~~~val~V~~I-P~aL~~~~~~~ 271 (673)
T PRK14010 248 SIAMLIALAVCLI-PTTIGGLLSAI 271 (673)
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 3456666666664 98766555443
No 10
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=32.26 E-value=2.5e+02 Score=24.73 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=30.9
Q ss_pred hHHHHHhHHHHHHHHHHHHhhheEeEeccC--CccCC-CCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 024232 174 SSVAKNLESANTFLSFLWWIVGFYWITASG--ETLIS-CSPQLYWLCVTFLAFDVVFVMICVGVAC 236 (270)
Q Consensus 174 ~~i~k~lesalt~Ff~VWfVVGfyWV~~gg--~ss~~-dAPqLYwLCIvFLAFdv~fvv~cyalp~ 236 (270)
..+-++.+..-++..=|.=++|-+=-. |. +++.. ..|..=|++++|+...++ +.|.+|+
T Consensus 55 ~~lr~Rydrlr~va~rvQ~vlgd~At~-gERl~allsWrdP~aT~lf~~~clv~av---vly~vP~ 116 (156)
T PF08372_consen 55 DSLRMRYDRLRSVAGRVQNVLGDVATQ-GERLQALLSWRDPRATALFVVFCLVAAV---VLYFVPF 116 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCCccHHHHHHHHHHHHHH---HHHHhhH
Confidence 345557777777666676666654211 11 23322 467776666666433332 3444444
No 11
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=31.66 E-value=85 Score=23.90 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 024232 210 SPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERV 260 (270)
Q Consensus 210 APqLYwLCIvFLAFdv~fvv~cyalp~li~ialCCCLPcIIaiLyavadqe 260 (270)
.+|++|++++|.++=. +++.. .||=|-.++-.-+..+
T Consensus 10 ~sQ~~Wl~i~f~~ly~---l~s~~-----------iLPri~~~l~~R~~~~ 46 (67)
T MTH00169 10 LTQYIWTLIILFFLFS---LLVNY-----------ILPKIQQQLVIRTKGV 46 (67)
T ss_pred HHHHHHHHHHHHHHHH---HHHHH-----------HHHHHHHHHHHHHHHh
Confidence 4789999988754332 22222 2676666665555444
No 12
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=31.25 E-value=4.2e+02 Score=24.41 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccCCCcccCCCCCCCCCCCcC
Q 024232 83 PIIVLDVLWNLVFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161 (270)
Q Consensus 83 ~wv~LElvwnLaqIVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~~~~~~~~~~~~~~~~s~e 161 (270)
|-..+-.+..++..+.++.-+... ++-+--.|+.-||.+..+=..+.+.+.+..|...|...... +
T Consensus 46 pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~-------------~ 112 (295)
T PF06814_consen 46 PLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINKTGTPS-------------E 112 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------c
Confidence 556677788888888887777766 45566789999999999999999999999998888643210 0
Q ss_pred CcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEeccCCccCCCCcchHHHHHHHHhhhh
Q 024232 162 GDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDV 225 (270)
Q Consensus 162 ~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~gg~ss~~dAPqLYwLCIvFLAFdv 225 (270)
....-..+.+.+|.++. +++=.++|--|-+ -...+.+.--+.-.+-+.+..++.
T Consensus 113 -------~~~~~~~i~~~~k~~~~--~~llllis~Gygi-vkp~L~~~~~~v~~l~i~~~v~~~ 166 (295)
T PF06814_consen 113 -------GWMIFAYIFSALKRTLS--FFLLLLISLGYGI-VKPSLGRREKKVLMLVILYFVFSN 166 (295)
T ss_pred -------hHHHHHHHHHHHHHHHH--HHHHHHHhcchhe-eccccCcceeehhHHHHHHHHHHH
Confidence 00113566677775544 3333688888877 344444433344444455555554
No 13
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=30.75 E-value=1.2e+02 Score=23.85 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHhhhhhHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 024232 219 TFLAFDVVFVMI-------CVGVACLIGIAVCCCLPCILGILYAL 256 (270)
Q Consensus 219 vFLAFdv~fvv~-------cyalp~li~ialCCCLPcIIaiLyav 256 (270)
++||+.++..++ .|+.|.+.-..+|+++=+..++.+++
T Consensus 33 ~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~av 77 (237)
T PF02932_consen 33 TLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAV 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhh
Confidence 367777766544 55556555555554443334444443
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.50 E-value=47 Score=27.36 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 024232 236 CLIGIAVCCC 245 (270)
Q Consensus 236 ~li~ialCCC 245 (270)
+||++.+|||
T Consensus 12 i~l~~~~~~~ 21 (130)
T PF12273_consen 12 ILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 15
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=28.92 E-value=52 Score=24.47 Aligned_cols=16 Identities=44% Similarity=1.184 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHHH
Q 024232 235 ACLIGIAVCCCLPCIL 250 (270)
Q Consensus 235 p~li~ialCCCLPcII 250 (270)
-|+++...|||+|+.+
T Consensus 36 l~~~~~~~~~~iP~~~ 51 (73)
T PF10601_consen 36 LCLFGCWPCCCIPFCC 51 (73)
T ss_pred HHHHHHHHHhhHhhcc
Confidence 3444445568888765
No 16
>KOG4554 consensus Protein involved in inorganic phosphate transport [Inorganic ion transport and metabolism]
Probab=27.88 E-value=2.6e+02 Score=25.37 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhH--HHHHHHHHHhhhhccCCCcccC--CCCCC-CCCCCcCC-cccc
Q 024232 93 LVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCL--FHVFCVSLEFKRRRRGEGVVFG--DSVSG-SSSTTVTG-DEEE 166 (270)
Q Consensus 93 LaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv--~hLplv~~rYr~r~~~~~~~~~--~~~~~-~~~~s~e~-~~~~ 166 (270)
++-|+++++++-+|+.=+=+.|=-+|++--.--|. .+++.-..-.++-+..+ |... ..+++ ..++.+++ .++-
T Consensus 5 ~~ni~isi~~MqiSrridf~~P~iiw~lR~lY~~sn~i~l~f~iY~m~rI~a~N-D~t~lky~epa~~fsg~s~ek~~~t 83 (185)
T KOG4554|consen 5 VVNIAISIASMQISRRIDFQDPKIIWYLRILYLCSNLIQLMFSIYIMRRIKATN-DCTKLKYVEPASPFSGGSEEKLVET 83 (185)
T ss_pred HHhHHHHHHHHHHhccccCCCCcchHHHHHHHHhccchhhhHHHHHHHHHHhcC-CcceEEEeccCCCCCCCCCceeEEe
Confidence 34567999999999865444444566655444444 66665433333222222 1111 11221 12221221 1111
Q ss_pred cccCCcchHHHHHhHHHHHHHHHHHHhhheEeEe
Q 024232 167 RFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (270)
Q Consensus 167 ~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~ 200 (270)
....-..+.+.|..++++.-|... -++-+||-+
T Consensus 84 TvrdYD~seL~ka~rs~~~~~aim-~fmHlym~y 116 (185)
T KOG4554|consen 84 TVRDYDLSELTKASRSAVIGFAIM-SFMHLYMKY 116 (185)
T ss_pred ehhhccHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 111123578899999988866554 566688866
No 17
>COG5065 PHO88 Protein involved in inorganic phosphate transport [Inorganic ion transport and metabolism]
Probab=27.88 E-value=2.6e+02 Score=25.37 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhH--HHHHHHHHHhhhhccCCCcccC--CCCCC-CCCCCcCC-cccc
Q 024232 93 LVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCL--FHVFCVSLEFKRRRRGEGVVFG--DSVSG-SSSTTVTG-DEEE 166 (270)
Q Consensus 93 LaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv--~hLplv~~rYr~r~~~~~~~~~--~~~~~-~~~~s~e~-~~~~ 166 (270)
++-|+++++++-+|+.=+=+.|=-+|++--.--|. .+++.-..-.++-+..+ |... ..+++ ..++.+++ .++-
T Consensus 5 ~~ni~isi~~MqiSrridf~~P~iiw~lR~lY~~sn~i~l~f~iY~m~rI~a~N-D~t~lky~epa~~fsg~s~ek~~~t 83 (185)
T COG5065 5 VVNIAISIASMQISRRIDFQDPKIIWYLRILYLCSNLIQLMFSIYIMRRIKATN-DCTKLKYVEPASPFSGGSEEKLVET 83 (185)
T ss_pred HHhHHHHHHHHHHhccccCCCCcchHHHHHHHHhccchhhhHHHHHHHHHHhcC-CcceEEEeccCCCCCCCCCceeEEe
Confidence 34567999999999865444444566655444444 66665433333222222 1111 11221 12221221 1111
Q ss_pred cccCCcchHHHHHhHHHHHHHHHHHHhhheEeEe
Q 024232 167 RFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (270)
Q Consensus 167 ~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~ 200 (270)
....-..+.+.|..++++.-|... -++-+||-+
T Consensus 84 TvrdYD~seL~ka~rs~~~~~aim-~fmHlym~y 116 (185)
T COG5065 84 TVRDYDLSELTKASRSAVIGFAIM-SFMHLYMKY 116 (185)
T ss_pred ehhhccHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 111123578899999988866554 566688866
No 18
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=26.68 E-value=62 Score=23.71 Aligned_cols=9 Identities=78% Similarity=2.239 Sum_probs=6.0
Q ss_pred HHhhHHHHH
Q 024232 242 VCCCLPCIL 250 (270)
Q Consensus 242 lCCCLPcII 250 (270)
.|||+|+.+
T Consensus 37 ~~~~iP~~~ 45 (67)
T smart00714 37 FCCCLPCCL 45 (67)
T ss_pred HHHHHHHhc
Confidence 477888644
No 19
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=25.47 E-value=61 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 024232 236 CLIGIAVCCCLPCILGILYA 255 (270)
Q Consensus 236 ~li~ialCCCLPcIIaiLya 255 (270)
--+.+++||-+|.+...++.
T Consensus 17 aAv~aS~CCi~Pllll~lGv 36 (116)
T PF02411_consen 17 AAVLASLCCIGPLLLLSLGV 36 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35678899999988777763
No 20
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=24.91 E-value=1.3e+02 Score=25.59 Aligned_cols=14 Identities=36% Similarity=1.037 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q 024232 232 VGVACLIGIAVCCC 245 (270)
Q Consensus 232 yalp~li~ialCCC 245 (270)
|..++++++..+||
T Consensus 76 ~~~a~v~g~~~l~~ 89 (155)
T PF07344_consen 76 YGAAFVLGVLLLCC 89 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 21
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=22.93 E-value=3.4e+02 Score=26.31 Aligned_cols=98 Identities=14% Similarity=0.264 Sum_probs=61.3
Q ss_pred hccccccCccchhhHHH-------HHHHHHHHHHHHhhhc----CCCC-CCCchhhHHhhhhhhhHHHHHHHHHHhh-hh
Q 024232 74 RQSYWAYSRPIIVLDVL-------WNLVFVIVAFAVLGVS----INEK-PEVPLRLRIVGYALQCLFHVFCVSLEFK-RR 140 (270)
Q Consensus 74 r~s~w~ySk~wv~LElv-------wnLaqIVaAivVL~lS----k~E~-P~~PLr~WIvGYa~gCv~hLplv~~rYr-~r 140 (270)
|--||--+-|++.+++- |+++.++++..+..++ .-+| +. =| .=|++||++++..++.-+- ++
T Consensus 105 RYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~ty----kW-~~y~ig~~a~lvvl~~l~~~~~ 179 (285)
T COG5524 105 RYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHSTY----KW-AYYAIGAAAFLVVLAVLVTGFF 179 (285)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhchhh----hH-HHHHHHHHHHHHHHHHHHhhhh
Confidence 44588899999999875 4555555554443332 2222 22 22 2499999999988877663 32
Q ss_pred ccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEecc
Q 024232 141 RRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITAS 202 (270)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~g 202 (270)
+...+ +.+++..-+...-+++-++|+.==.+|.+..
T Consensus 180 ~~a~~--------------------------~~~~v~~~F~~l~~~~vvLWl~YPivW~ig~ 215 (285)
T COG5524 180 AKAKT--------------------------RGTEVRSLFLTLRNYTVVLWLGYPIVWLIGP 215 (285)
T ss_pred hhhcc--------------------------cchHHHHHHHHHHHHHHHHHHhccceeEEcc
Confidence 22211 1244555566667889999988777799943
No 22
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.77 E-value=41 Score=20.91 Aligned_cols=18 Identities=50% Similarity=0.649 Sum_probs=14.2
Q ss_pred ccCcchhhhhchhhhhhh
Q 024232 56 LREPSVRVRETAAEQLEE 73 (270)
Q Consensus 56 ~r~~s~~vre~aaeqlee 73 (270)
+..|+-.||++|++-+.+
T Consensus 9 l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HT-SSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 688999999999987643
No 23
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=22.22 E-value=4.3e+02 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=19.1
Q ss_pred cCCCCCCCchhhHHhhhhhhhHHHHHH
Q 024232 106 SINEKPEVPLRLRIVGYALQCLFHVFC 132 (270)
Q Consensus 106 Sk~E~P~~PLr~WIvGYa~gCv~hLpl 132 (270)
+|..+|+.|+.-=-+.|.+.++..+.=
T Consensus 38 ~rf~yPerpi~fl~~Cy~~~s~~~l~~ 64 (328)
T PF01534_consen 38 SRFRYPERPIIFLSFCYFIVSLGYLIR 64 (328)
T ss_pred cccCCccchhhHHHHHHHHHHHHHHHH
Confidence 467889999876667777766655543
No 24
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.07 E-value=94 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhc
Q 024232 246 LPCILGILYALTE 258 (270)
Q Consensus 246 LPcIIaiLyavad 258 (270)
+-.|-.|+|++=.
T Consensus 12 Vaii~lIlY~iYn 24 (68)
T PF05961_consen 12 VAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHh
Confidence 3336678888854
No 25
>PHA03049 IMV membrane protein; Provisional
Probab=21.65 E-value=97 Score=24.07 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=6.9
Q ss_pred HHHHHHHhhc
Q 024232 249 ILGILYALTE 258 (270)
Q Consensus 249 IIaiLyavad 258 (270)
|-.|+|++=.
T Consensus 15 i~lIvYgiYn 24 (68)
T PHA03049 15 IGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHh
Confidence 6677888753
No 26
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=21.02 E-value=31 Score=29.79 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.4
Q ss_pred HHhhhhh
Q 024232 220 FLAFDVV 226 (270)
Q Consensus 220 FLAFdv~ 226 (270)
.++.++|
T Consensus 79 ~iivgvi 85 (179)
T PF13908_consen 79 GIIVGVI 85 (179)
T ss_pred eeeeehh
Confidence 3455554
No 27
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.90 E-value=1.7e+02 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=8.6
Q ss_pred CCCcchHHHHHHHHh
Q 024232 208 SCSPQLYWLCVTFLA 222 (270)
Q Consensus 208 ~dAPqLYwLCIvFLA 222 (270)
.+.++..|..+.|+.
T Consensus 126 ~~~~~~l~~~i~~~v 140 (248)
T PF11368_consen 126 ISNKSSLFIIIPFLV 140 (248)
T ss_pred cCcchHHHHHHHHHH
Confidence 455555666665553
No 28
>PF12326 EOS1: N-glycosylation protein; InterPro: IPR021100 This entry represents a family, containing several predicted transmembrane helices, which includes the fungal N-glycosylation protein EOS1. EOS1 is not essential for cell growth, but is necessary for tolerance to oxidative stress, and appears to be involved the N-glycosylation of cellular proteins [].
Probab=20.86 E-value=2.7e+02 Score=24.53 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHhhhcC-CCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhc
Q 024232 96 VIVAFAVLGVSI-NEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR 141 (270)
Q Consensus 96 IVaAivVL~lSk-~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~ 141 (270)
|......+.+|- .++|+.||-.||+ ++|.+++.-..-.|-.-|
T Consensus 51 i~~t~~~l~ls~~s~d~~~~L~~WI~---Is~~lt~~yivq~~vTSN 94 (148)
T PF12326_consen 51 ICWTLEHLLLSGLSPDPRYPLPAWIL---ISCTLTISYIVQNWVTSN 94 (148)
T ss_pred HHHHHHHHHHHhcCCCccccchHHHH---HHHHHHHHHHHHHHHhcc
Confidence 455555566663 4459999999996 666666666555554433
No 29
>PF10028 DUF2270: Predicted integral membrane protein (DUF2270); InterPro: IPR014470 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.74 E-value=1.6e+02 Score=26.78 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=35.7
Q ss_pred hhchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhh
Q 024232 64 RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRR 140 (270)
Q Consensus 64 re~aaeqleer~s~w~ySk~wv~LElvwnLaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r 140 (270)
|.|.=.+--.+.++|| +=+++++...++|..++|+.||-+ |-++...++..|=||+
T Consensus 10 R~~~WR~RLD~TTNWA--------------V~~~aa~lS~afss~~~~h~~lL~-------~~~l~~~FL~iEARRY 65 (185)
T PF10028_consen 10 RMTTWRTRLDRTTNWA--------------VTTTAAILSFAFSSPDAPHYVLLF-------GMFLVTFFLFIEARRY 65 (185)
T ss_pred HHHHHHHhcccccchH--------------HHHHHHHHHhhccCCCCccHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4455556666777886 224566777778888999988754 4445555665554443
Done!