Query 024232
Match_columns 270
No_of_seqs 114 out of 127
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6x_A GPR, green-light absorb 36.3 76 0.0026 27.8 6.5 103 72-201 75-190 (243)
2 2ks1_B Epidermal growth factor 25.8 76 0.0026 21.4 3.6 33 109-144 6-41 (44)
3 1m0k_A BR, bacteriorhodopsin; 24.0 1.6E+02 0.0056 26.0 6.6 102 74-201 95-205 (262)
4 1xio_A Anabaena sensory rhodop 22.1 92 0.0031 27.7 4.5 105 71-201 69-186 (261)
5 2l2t_A Receptor tyrosine-prote 18.8 1.4E+02 0.0048 20.2 3.8 32 110-144 6-40 (44)
6 2ei4_A AR 2, archaerhodopsin-2 18.0 88 0.003 27.5 3.4 102 74-201 87-197 (253)
7 2h3o_A MERF; membrane protein, 13.2 50 0.0017 24.1 0.5 18 239-256 6-23 (61)
8 2jwa_A Receptor tyrosine-prote 12.2 1.7E+02 0.0057 19.9 2.8 28 117-144 12-41 (44)
9 2k1k_A Ephrin type-A receptor 10.0 1.5E+02 0.0051 19.2 1.9 10 119-128 13-22 (38)
10 3mk7_C Cytochrome C oxidase, C 9.8 4E+02 0.014 23.5 5.3 25 116-140 6-30 (311)
No 1
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=36.28 E-value=76 Score=27.83 Aligned_cols=103 Identities=13% Similarity=0.241 Sum_probs=60.3
Q ss_pred hhhccccccCccchhhHHHHH-----------HH-HHHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhh
Q 024232 72 EERQSYWAYSRPIIVLDVLWN-----------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFK 138 (270)
Q Consensus 72 eer~s~w~ySk~wv~LElvwn-----------La-qIVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr 138 (270)
.=|--||.-.-|.+.+|+... +. .|++++++++.- -.|-=..+ .| .+|+++|++-+-++|.-+.
T Consensus 75 ~~RYidWllTvPLllvel~Li~~~~g~~~~~~~~~li~as~vMiv~G~~g~~~~~~--kw-~~f~is~~~~l~Ily~l~~ 151 (243)
T 2l6x_A 75 VFRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVMLVFGYMGEAGIMA--AW-PAFIIGCLAWVYMIYELWA 151 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCTHHHHHHHHHHHHHHHHHHHHHHCSSC--TT-THHHHHHHHHHHHHHHHTT
T ss_pred eeehhcHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHhccc--HH-HHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999864 22 345555544431 11110011 22 5689999999999886555
Q ss_pred hhccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 139 RRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 139 ~r~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
--.+...+ ....++.+-++..--++.++|.+=-..|...
T Consensus 152 ~~~~~~a~------------------------~~~~~v~~~f~~l~~~~~v~W~iYPi~w~l~ 190 (243)
T 2l6x_A 152 GEGKSACN------------------------TASPAVQSAYNTMMYIIIFGWAIYPVGYFTG 190 (243)
T ss_dssp CSTTTSSS------------------------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHh------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21010000 0012344445555566778888877778884
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.82 E-value=76 Score=21.45 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=18.7
Q ss_pred CCCCCchhhHHhhhhhhh---HHHHHHHHHHhhhhccCC
Q 024232 109 EKPEVPLRLRIVGYALQC---LFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 109 E~P~~PLr~WIvGYa~gC---v~hLplv~~rYr~r~~~~ 144 (270)
|.+++|. |++-.+|. ++.+.+++|-|++|++.+
T Consensus 6 ~~s~~~~---IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 6 NGPKIPS---IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CCSCSSS---STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCcce---EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 4456555 55555553 345556667777766543
No 3
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=24.01 E-value=1.6e+02 Score=26.03 Aligned_cols=102 Identities=16% Similarity=0.272 Sum_probs=58.7
Q ss_pred hccccccCccchhhHHHHH-------HH-HHHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccCC
Q 024232 74 RQSYWAYSRPIIVLDVLWN-------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 74 r~s~w~ySk~wv~LElvwn-------La-qIVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~~ 144 (270)
|--||--.-|.+.+|+-.. +. .|++++++++.- -.|--.....-| .+|+++|++-+.++|.-+..-.+..
T Consensus 95 RYidWllTvPLllve~~Llag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~a~l~Ily~l~~~~~~~a 173 (262)
T 1m0k_A 95 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 173 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668989999999998642 22 344444444331 112100112344 5789999999999987665321110
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 145 ~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
+ +...++.+.++..--++.+.|.+=-..|...
T Consensus 174 ~-------------------------~~~~~v~~~f~~l~~~v~v~W~iYPi~w~l~ 205 (262)
T 1m0k_A 174 E-------------------------SMRPEVASTFKVLRNVTVVLWSAYPVVWLIG 205 (262)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H-------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0112344455555566778888877778873
No 4
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=22.05 E-value=92 Score=27.72 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=61.9
Q ss_pred hhhhccccccCccchhhHHHHH-----------HHHHHHHHHHhhhc--CCCCCCCchhhHHhhhhhhhHHHHHHHHHHh
Q 024232 71 LEERQSYWAYSRPIIVLDVLWN-----------LVFVIVAFAVLGVS--INEKPEVPLRLRIVGYALQCLFHVFCVSLEF 137 (270)
Q Consensus 71 leer~s~w~ySk~wv~LElvwn-----------LaqIVaAivVL~lS--k~E~P~~PLr~WIvGYa~gCv~hLplv~~rY 137 (270)
.--|--||--.-|.+.+|+... +...+++.+|..++ -.|--.....-| .+|+++|++.+.++|.-+
T Consensus 69 ~~~RYiDWllTvPLllvel~Li~l~~ag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~ 147 (261)
T 1xio_A 69 HYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRY-LWYICGVCAFLIILWGIW 147 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 3557779999999999999866 33333333333333 122211111233 468999999999998766
Q ss_pred hhhccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 138 KRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 138 r~r~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
..-.+..+ +...++.+.++..--+..+.|.+--..|...
T Consensus 148 ~~~~~~a~-------------------------~~~~~v~~~f~~l~~~v~v~W~iYPI~w~l~ 186 (261)
T 1xio_A 148 NPLRAKTR-------------------------TQSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (261)
T ss_dssp THHHHHHT-------------------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53221100 0012334445555566778888877778884
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.78 E-value=1.4e+02 Score=20.22 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCCCchhhHHhhhhhhhH---HHHHHHHHHhhhhccCC
Q 024232 110 KPEVPLRLRIVGYALQCL---FHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 110 ~P~~PLr~WIvGYa~gCv---~hLplv~~rYr~r~~~~ 144 (270)
.|++|. |+|-.+|.+ +.+.+++|-|++|++.+
T Consensus 6 ~s~~~a---IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 6 HARTPL---IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SCSSHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCcce---EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 466665 666666633 45556667777666543
No 6
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=17.96 E-value=88 Score=27.55 Aligned_cols=102 Identities=16% Similarity=0.366 Sum_probs=59.9
Q ss_pred hccccccCccchhhHHHHH-------HH-HHHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccCC
Q 024232 74 RQSYWAYSRPIIVLDVLWN-------LV-FVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 74 r~s~w~ySk~wv~LElvwn-------La-qIVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~~ 144 (270)
|--||--.-|.+++|+-.. +. .|++++++++.- -.|--.....-| .+|+++|++.+.++|.-+..-.+..
T Consensus 87 RYidWllTvPLllve~~Llag~~~~~~~~li~as~vMiv~G~~Ge~~~~~~~kw-~~f~is~~~~l~Ily~l~~~~~~~a 165 (253)
T 2ei4_A 87 RYADWLFTTPLLLLDLALLAKVDRVTIGTLIGVDALMIVTGLIGALSKTPLARY-TWWLFSTIAFLFVLYYLLTSLRSAA 165 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668989999999999753 22 344444434331 122211122344 6789999999999987665322210
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 145 ~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
+ +...++-+.++..--+..+.|.+--..|...
T Consensus 166 ~-------------------------~~~~~v~~~f~~l~~~v~v~W~iYPi~w~l~ 197 (253)
T 2ei4_A 166 A-------------------------KRSEEVRSTFNTLTALVAVLWTAYPILWIVG 197 (253)
T ss_dssp T-------------------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H-------------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0012334445555566778888877778873
No 7
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=13.23 E-value=50 Score=24.06 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=4.3
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 024232 239 GIAVCCCLPCILGILYAL 256 (270)
Q Consensus 239 ~ialCCCLPcIIaiLyav 256 (270)
.+++||.-|..-.+++++
T Consensus 6 ~aaLCC~tPvLvil~G~~ 23 (61)
T 2h3o_A 6 LVALSSFTPVLVILLGVV 23 (61)
T ss_dssp ----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 468999999665555544
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.21 E-value=1.7e+02 Score=19.88 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=15.8
Q ss_pred hHHhhhhhh--hHHHHHHHHHHhhhhccCC
Q 024232 117 LRIVGYALQ--CLFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 117 ~WIvGYa~g--Cv~hLplv~~rYr~r~~~~ 144 (270)
.+|+|-.+| +++.+.++..-|.+|++..
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 345555555 4455556666777766543
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.04 E-value=1.5e+02 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.384 Sum_probs=5.3
Q ss_pred HhhhhhhhHH
Q 024232 119 IVGYALQCLF 128 (270)
Q Consensus 119 IvGYa~gCv~ 128 (270)
|.|=.+|+++
T Consensus 13 IAGiVvG~v~ 22 (38)
T 2k1k_A 13 IVAVIFGLLL 22 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeeehHHHH
Confidence 4555555543
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=9.80 E-value=4e+02 Score=23.49 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=19.8
Q ss_pred hhHHhhhhhhhHHHHHHHHHHhhhh
Q 024232 116 RLRIVGYALQCLFHVFCVSLEFKRR 140 (270)
Q Consensus 116 r~WIvGYa~gCv~hLplv~~rYr~r 140 (270)
-.||+.-++++++-+..|.+-+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (311)
T 3mk7_C 6 SGYIALLTLGTIVALFWLIFATRKG 30 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3799999999998888877766553
Done!