Query 024232
Match_columns 270
No_of_seqs 114 out of 127
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 04:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024232.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024232hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 48.8 4.4 0.00032 33.0 2.6 108 67-201 64-186 (226)
2 d1uaza_ f.13.1.1 (A:) Archaerh 39.7 12 0.00086 30.8 4.0 101 74-200 88-197 (236)
3 d1m0ka_ f.13.1.1 (A:) Bacterio 25.8 21 0.0015 29.0 3.2 101 74-200 78-187 (227)
4 d1e12a_ f.13.1.1 (A:) Halorhod 24.0 9.3 0.00068 31.5 0.5 100 74-201 85-194 (239)
5 d1v54l_ f.23.6.1 (L:) Mitochon 20.9 66 0.0048 20.6 4.2 32 203-238 7-38 (46)
6 d1oeda_ f.36.1.1 (A:) Acetylch 18.7 54 0.0039 25.4 4.2 50 84-133 67-116 (227)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 11.3 90 0.0065 21.5 3.3 10 213-222 45-54 (103)
8 d2cchb2 a.74.1.1 (B:309-432) C 7.2 85 0.0062 22.6 1.7 34 94-127 45-79 (124)
9 d1oedc_ f.36.1.1 (C:) Acetylch 6.0 1.1E+02 0.0081 23.5 1.9 51 84-134 67-117 (260)
10 d1oedb_ f.36.1.1 (B:) Acetylch 5.5 1.7E+02 0.013 22.3 2.8 52 82-133 65-116 (250)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=48.83 E-value=4.4 Score=33.00 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=63.7
Q ss_pred hhhhhhh-hccccccCccchhhHHHHHH-----------HH-HHHHHHHhhhc-CCC-CCCCchhhHHhhhhhhhHHHHH
Q 024232 67 AAEQLEE-RQSYWAYSRPIIVLDVLWNL-----------VF-VIVAFAVLGVS-INE-KPEVPLRLRIVGYALQCLFHVF 131 (270)
Q Consensus 67 aaeqlee-r~s~w~ySk~wv~LElvwnL-----------aq-IVaAivVL~lS-k~E-~P~~PLr~WIvGYa~gCv~hLp 131 (270)
..+|... |--||.-+-|.+.+|+.+.+ .. ++++.+++..- -.| .+. +--- .+.|+++|++-+.
T Consensus 64 ~~~~v~~~RYiDW~lTtPlll~~l~l~~~~~~~~~~~~~~~li~~~~~Mi~~G~~g~~~~~-~~~~-~~~f~~~~~~f~~ 141 (226)
T d1xioa_ 64 AGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSER-DWVR-YLWYICGVCAFLI 141 (226)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSS-HHHH-HHHHHHHHHHHHH
T ss_pred cCceeeHHHHHHHHHcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc-hHHH-HHHHHHHHHHHHH
Confidence 3344443 88999999999999997653 22 33344443322 233 222 1123 3478999999888
Q ss_pred HHHHHhhhhccCCCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 132 CVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 132 lv~~rYr~r~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
++|.-|..-.+...+ ......+-+...-.++.++|.+=+..|.+.
T Consensus 142 i~y~l~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 142 ILWGIWNPLRAKTRT-------------------------QSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp HHHHHHTHHHHHHTT-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888666432221100 012344455555667788999989999983
No 2
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=39.66 E-value=12 Score=30.82 Aligned_cols=101 Identities=16% Similarity=0.308 Sum_probs=63.8
Q ss_pred hccccccCccchhhHHHHH-------HHH-HHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccCC
Q 024232 74 RQSYWAYSRPIIVLDVLWN-------LVF-VIVAFAVLGVS-INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 74 r~s~w~ySk~wv~LElvwn-------Laq-IVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~~ 144 (270)
|--||.-.-|.+.+|+... +.. ++++++++..- -.|--..|..- .+.|+++|++.+.++|.-+..-....
T Consensus 88 RYiDW~lTtPLll~~l~ll~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~-~~~~~~~~~~~~~i~y~l~~~~~~~~ 166 (236)
T d1uaza_ 88 RYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVDALMIVTGLVGALSHTPLAR-YTWWLFSTICMIVVLYFLATSLRAAA 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHH-HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999988653 222 33344433332 23433334333 35799999999999887765433221
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEe
Q 024232 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (270)
Q Consensus 145 ~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~ 200 (270)
++ ....+.+-++..-.++.++|.+=...|++
T Consensus 167 ~~-------------------------~~~~~~~~~~~l~~~~~v~W~iYPi~~~l 197 (236)
T d1uaza_ 167 KE-------------------------RGPEVASTFNTLTALVLVLWTAYPILWII 197 (236)
T ss_dssp TS-------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 01334455666677788899998999988
No 3
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=25.84 E-value=21 Score=29.03 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=62.8
Q ss_pred hccccccCccchhhHHHHHH-------HHHHHHHHHhhhc--CCCCCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccCC
Q 024232 74 RQSYWAYSRPIIVLDVLWNL-------VFVIVAFAVLGVS--INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGE 144 (270)
Q Consensus 74 r~s~w~ySk~wv~LElvwnL-------aqIVaAivVL~lS--k~E~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~~ 144 (270)
|..||.-.-|.+.+|+.... ..++.+-++..++ -.|--..+-.-| ++|+++|++.+.++|.-|..-....
T Consensus 78 RYiDWllTtPLll~~l~li~~~~~~~~~~li~a~~~Mi~~G~~g~~~~~~~~k~-~~~~is~~~f~~i~~~l~~~~~~~a 156 (227)
T d1m0ka_ 78 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999986532 3333333333332 123111111234 5799999999999988776532211
Q ss_pred CcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEe
Q 024232 145 GVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWIT 200 (270)
Q Consensus 145 ~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~ 200 (270)
+ .....+.+.++..-.+..++|.+=...|.+
T Consensus 157 ~-------------------------~~~~~~~~~~~~l~~~~~v~W~iYPI~~~l 187 (227)
T d1m0ka_ 157 E-------------------------SMRPEVASTFKVLRNVTVVLWSAYPVVWLI 187 (227)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------------------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 012345566666677788999999999988
No 4
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=23.99 E-value=9.3 Score=31.45 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=61.7
Q ss_pred hccccccCccchhhHHHHH-------HHH-HHHHHHHhhhc-CCC-CCCCchhhHHhhhhhhhHHHHHHHHHHhhhhccC
Q 024232 74 RQSYWAYSRPIIVLDVLWN-------LVF-VIVAFAVLGVS-INE-KPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143 (270)
Q Consensus 74 r~s~w~ySk~wv~LElvwn-------Laq-IVaAivVL~lS-k~E-~P~~PLr~WIvGYa~gCv~hLplv~~rYr~r~~~ 143 (270)
|--||.-+-|.+.+|+.+. +.. ++++.+++..- -.| .+.....-| +.|+++|++.+.++|.-+......
T Consensus 85 RYiDW~lTtPLll~~l~l~~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~w-~~~~i~~~~~~~i~y~l~~~~~~~ 163 (239)
T d1e12a_ 85 RYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRW-AFYAISCAFFVVVLSALVTDWAAS 163 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHH-HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH-HHHHHHHHHHHHHHHHHhccchhh
Confidence 8889999999999998763 233 33444444332 244 233223344 678999999999998877654321
Q ss_pred CCcccCCCCCCCCCCCcCCcccccccCCcchHHHHHhHHHHHHHHHHHHhhheEeEec
Q 024232 144 EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITA 201 (270)
Q Consensus 144 ~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGfyWV~~ 201 (270)
..+ + ..... ++..--++.++|.+=...|++.
T Consensus 164 ~~~------------------~------~~~~~---~~~l~~~~~v~W~iYPi~~~l~ 194 (239)
T d1e12a_ 164 ASS------------------A------GTAEI---FDTLRVLTVVLWLGYPIVWAVG 194 (239)
T ss_dssp HHH------------------H------TCHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhh------------------H------HHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 100 0 01222 3334455778899988999883
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.94 E-value=66 Score=20.60 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCccCCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024232 203 GETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238 (270)
Q Consensus 203 g~ss~~dAPqLYwLCIvFLAFdv~fvv~cyalp~li 238 (270)
|..+.-.--|-|.|...|-+|= ..+++.||+|
T Consensus 7 G~NLPFsv~Nk~rLla~m~~~f----Gsgfa~PF~i 38 (46)
T d1v54l_ 7 GKNIPFSVENKWRLLAMMTLFF----GSGFAAPFFI 38 (46)
T ss_dssp TTSSSSCCSSHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHH----hccccchHHH
Confidence 4556666677888887775443 3588888886
No 6
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=18.68 E-value=54 Score=25.37 Aligned_cols=50 Identities=6% Similarity=0.184 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhHHHHHHH
Q 024232 84 IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCV 133 (270)
Q Consensus 84 wv~LElvwnLaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv~hLplv 133 (270)
++..-++....-++.+++|+.+.+++....|.--|+--..++++.-+.+.
T Consensus 67 y~~~~~~~v~~sli~tiiV~~l~~~~~~~~~~p~w~r~~~~~~l~~~l~~ 116 (227)
T d1oeda_ 67 YMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFF 116 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhheeccCCCCCCCchHHHHHHHHhhhHHhcc
Confidence 34444555555556677788887766655666667776667776666543
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.28 E-value=90 Score=21.50 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=6.4
Q ss_pred hHHHHHHHHh
Q 024232 213 LYWLCVTFLA 222 (270)
Q Consensus 213 LYwLCIvFLA 222 (270)
+||-.+.+-+
T Consensus 45 ly~~~vT~tT 54 (103)
T d1r3jc_ 45 LWWSVETATT 54 (103)
T ss_dssp HHHHHHHHTT
T ss_pred hhhheeeecc
Confidence 6776666644
No 8
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.19 E-value=85 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhc-CCCCCCCchhhHHhhhhhhhH
Q 024232 94 VFVIVAFAVLGVS-INEKPEVPLRLRIVGYALQCL 127 (270)
Q Consensus 94 aqIVaAivVL~lS-k~E~P~~PLr~WIvGYa~gCv 127 (270)
++|+||++.|+.. .++.|-.|-..+..||...=+
T Consensus 45 S~lAaaai~lar~~l~~~~W~~~L~~~t~y~~~~l 79 (124)
T d2cchb2 45 SVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESL 79 (124)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHhCCCHHHH
Confidence 6777888887755 577787788889999987643
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.97 E-value=1.1e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhHHHHHHHH
Q 024232 84 IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVS 134 (270)
Q Consensus 84 wv~LElvwnLaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv~hLplv~ 134 (270)
+..+-++....-++.+++|+.+.++.....|+--|+=-..++.++-++++.
T Consensus 67 y~~~~~~~v~~s~~~t~~Vl~~~~~~~~~~~~p~w~R~~~l~~l~~~l~m~ 117 (260)
T d1oedc_ 67 YLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMS 117 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHhheeeeecccccCccchHHHHHHHHhccHHHccc
Confidence 344555555556666777888876554334556677777777777776653
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.54 E-value=1.7e+02 Score=22.27 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHhhhhhhhHHHHHHH
Q 024232 82 RPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCV 133 (270)
Q Consensus 82 k~wv~LElvwnLaqIVaAivVL~lSk~E~P~~PLr~WIvGYa~gCv~hLplv 133 (270)
+.++.+-++....-++.+++|+-+.+......|+--|+--+-+++++-+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR~lfL~~la~ll~m 116 (250)
T d1oedb_ 65 IRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWI 116 (250)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeccCcccCCcchHHHHHHHHhhhHHhcc
Done!