BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024233
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
+SR LQ+ + G + + V ++ D V+V +G +GDLL+ ADG S +
Sbjct: 124 VSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
Query: 189 RKNLFG--PQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 246
R + G PQ ++GY + G+ + A + F+G + V AG+ ++
Sbjct: 184 RPWVLGFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFF 242
Query: 247 FNKEPAG 253
PAG
Sbjct: 243 DVPLPAG 249
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
+SR LQ+ G + + V ++ D V+V +G +GDLL+ ADG S +
Sbjct: 124 VSRAELQREXLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
Query: 189 RKNLFG--PQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 246
R + G PQ ++GY + G+ + A + F+G + V AG+ ++
Sbjct: 184 RPWVLGFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFF 242
Query: 247 FNKEPAG 253
PAG
Sbjct: 243 DVPLPAG 249
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 115 FTPAAEKGLPVTRV-ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCY 173
+P A K + R+ ISR L++IL K + + I N++ V + + +G
Sbjct: 94 ISPXAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHE 153
Query: 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPA 215
D+LVGADG SKVRK E G + G A PA
Sbjct: 154 NVDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPA 195
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 129 ISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLVG 180
I R LQ IL AV G + + V ++ +V + +G Q D+LVG
Sbjct: 104 IHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG 163
Query: 181 ADGIWSKVRKNLFGPQEAI-FSGYTCYTGIADF 212
ADGI S VR +L Q + G T + G+ +F
Sbjct: 164 ADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEF 196
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 129 ISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLVG 180
I R LQ IL AV G + + V ++ +V + +G Q D+LVG
Sbjct: 104 IHRGELQXILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG 163
Query: 181 ADGIWSKVRKNLFGPQEAI-FSGYTCYTGIADF 212
ADGI S VR +L Q + G T + G+ +F
Sbjct: 164 ADGIHSAVRAHLHPDQRPLSHGGITXWRGVTEF 196
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 122 GLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDL 177
GLP R+++R L L A+A+G +I +N V D V + L+ G+ DL
Sbjct: 134 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 187
Query: 178 LVGADGIWSKVRKNL 192
+VGADG+ SKVR ++
Sbjct: 188 IVGADGVGSKVRDSI 202
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 39 KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98
K+ G++V + EK S +R G I + N L LE L ++V++ G T
Sbjct: 31 KQNGWDVRLHEKS-SELRAFG---AGIYLWHNGLRVLEG--LGALDDVLQ-GSHTPPTYE 83
Query: 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVID 155
+ S + +TF GLP R+++R L L A+A+G +I +N V
Sbjct: 84 TWMHNKS----VSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA- 132
Query: 156 FKDHGDKV-SVVLENGQCYAGDLLVGADGIWSKVRKNL 192
D V + L+ G+ DL+VGADG+ SKVR ++
Sbjct: 133 ----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSI 166
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 122 GLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDL 177
GLP R+++R L L A+A+G +I +N V D V + L+ G+ DL
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 178 LVGADGIWSKVRKNL 192
+VGADG+ SKVR ++
Sbjct: 152 IVGADGVGSKVRDSI 166
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 39 KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98
K+ G++V + EK S +R G I + N L LE L ++V++ G T
Sbjct: 31 KQNGWDVRLHEKS-SELRAFG---AGIYLWHNGLRVLEG--LGALDDVLQ-GSHTPPTYE 83
Query: 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVID 155
+ S + +TF GLP R+++R L L A+A+G +I +N V
Sbjct: 84 TWMHNKS----VSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA- 132
Query: 156 FKDHGDKV-SVVLENGQCYAGDLLVGADGIWSKVRKNL 192
D V + L+ G+ DL+VGADG+ SKVR ++
Sbjct: 133 ----ADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSI 166
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 122 GLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDL 177
GLP R+++R L L A+A+G +I +N V D V + L+ G+ DL
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 178 LVGADGIWSKVRKNL 192
+VGADG+ SKVR ++
Sbjct: 152 IVGADGVGSKVRDSI 166
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 122 GLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDL 177
GLP R+ +R L L A+A+G +I +N V D V + L+ G+ DL
Sbjct: 134 GLP-WRIXTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 187
Query: 178 LVGADGIWSKVRKNL 192
+VGADG+ SKVR ++
Sbjct: 188 IVGADGVGSKVRDSI 202
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 16/147 (10%)
Query: 80 LDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 139
LD+ ++ G +R GI G+ ++FD ++G P ++ + +
Sbjct: 9 LDLVRTILDTGTWQSNRTGIRTIGIPGA-MLRFDL-----QQGFPAV-TTKKLAFKSAIG 61
Query: 140 KAVGDEIILNESNVIDFKDHGDKV--SVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQE 197
+ VG + + +F+ G KV + EN Q A GAD + +++G Q
Sbjct: 62 ELVG--FLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDL-----GDVYGVQW 114
Query: 198 AIFSGYTCYTGIADFVPADIESVGYRV 224
+ GY AD AD S G+R+
Sbjct: 115 RRWPGYKVLDAHADAQIADATSRGFRI 141
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 105 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 164
Query: 189 RK 190
RK
Sbjct: 165 RK 166
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 126 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 185
Query: 189 RK 190
RK
Sbjct: 186 RK 187
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 189 RK 190
RK
Sbjct: 185 RK 186
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 189 RK 190
RK
Sbjct: 185 RK 186
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 105 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 164
Query: 189 RK 190
RK
Sbjct: 165 RK 166
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 129 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKV 188
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL++ A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 189 RK 190
RK
Sbjct: 185 RK 186
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 138 LAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQE 197
L + G E ++ + V + +G + ++GADG S VRK L G E
Sbjct: 105 LYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLG-IE 163
Query: 198 AIFSGYTCYTGI 209
++GY + G+
Sbjct: 164 PTYAGYVTWRGV 175
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 13/157 (8%)
Query: 40 RKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99
R+G V+V E+ R E G ++ + +EA L +AE R G R+
Sbjct: 27 RQGHRVVVVEQ----ARRERAINGADLLKPAGIRVVEAAGL-LAEVTRRGG-----RVRH 76
Query: 100 LVDGISGSWYIKFDTFTPAAEKG---LPVTRVISRMTLQQILAKAVGDEIILNESNVIDF 156
++ +++ ++ +G L + R+ L++I +A + + +
Sbjct: 77 ELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR 136
Query: 157 KDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLF 193
+ V L +G+ ++VGADGI S VR+ L
Sbjct: 137 DERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL 173
>pdb|3OBR|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
pdb|3OBT|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Ligand Binding Domain In Complex With N-Acetylneuraminic
Acid
Length = 434
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 142 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 36 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 88
>pdb|3RMY|A Chain A, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|B Chain B, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|C Chain C, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|D Chain D, Crystal Structure Of HcrD W1238A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 142 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3RMX|A Chain A, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|B Chain B, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|C Chain C, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|D Chain D, Crystal Structure Of HcrD F1240A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 142 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3N7J|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
Length = 415
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 142 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3OGG|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin D
Length = 414
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 142 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 29 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 81
>pdb|1LRW|A Chain A, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
pdb|1LRW|C Chain C, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
Length = 600
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 209 IADFVPADIESVGYR-VFLGHKQYFVSSDVGAGKMQWYAFNKEP 251
IA +V D+ VG LG + Y + DV +G+M+W AF P
Sbjct: 160 IAPYVIKDLVLVGSSGAELGVRGYVTAYDVKSGEMRWRAFATGP 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,854,389
Number of Sequences: 62578
Number of extensions: 321946
Number of successful extensions: 625
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 30
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)