Query 024233
Match_columns 270
No_of_seqs 186 out of 1937
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 7.8E-32 1.7E-36 243.3 27.9 235 17-251 79-313 (668)
2 PRK06753 hypothetical protein; 100.0 2.4E-27 5.1E-32 205.8 26.1 214 21-250 2-215 (373)
3 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.2E-27 2.5E-32 208.3 20.9 216 19-247 2-222 (387)
4 PRK06475 salicylate hydroxylas 100.0 1.8E-26 3.8E-31 201.9 26.2 220 20-249 3-236 (400)
5 PRK07236 hypothetical protein; 100.0 1.7E-26 3.7E-31 201.2 23.2 206 15-239 2-212 (386)
6 PRK08013 oxidoreductase; Provi 100.0 2.4E-26 5.2E-31 201.1 24.0 220 19-248 3-229 (400)
7 PRK07588 hypothetical protein; 100.0 5.6E-26 1.2E-30 198.3 26.1 220 20-250 1-223 (391)
8 PRK06617 2-octaprenyl-6-methox 100.0 7E-26 1.5E-30 196.4 25.2 207 20-241 2-212 (374)
9 PRK05868 hypothetical protein; 100.0 1.1E-25 2.5E-30 194.7 26.4 219 20-249 2-224 (372)
10 PRK08850 2-octaprenyl-6-methox 100.0 5.1E-26 1.1E-30 199.4 24.1 221 19-248 4-229 (405)
11 PRK08163 salicylate hydroxylas 99.9 1.5E-25 3.2E-30 196.1 26.3 221 18-248 3-230 (396)
12 TIGR01989 COQ6 Ubiquinone bios 99.9 1.4E-25 3.1E-30 198.1 24.2 219 20-248 1-244 (437)
13 PRK07538 hypothetical protein; 99.9 3.1E-25 6.7E-30 194.9 26.0 219 20-251 1-237 (413)
14 TIGR03219 salicylate_mono sali 99.9 1.1E-25 2.4E-30 197.8 22.8 215 21-248 2-237 (414)
15 PRK07364 2-octaprenyl-6-methox 99.9 1.8E-25 4E-30 196.6 23.7 234 1-247 1-240 (415)
16 PRK09126 hypothetical protein; 99.9 3.1E-25 6.7E-30 193.8 23.2 224 18-250 2-229 (392)
17 PRK08773 2-octaprenyl-3-methyl 99.9 5.5E-25 1.2E-29 192.1 24.1 224 15-248 2-229 (392)
18 PRK07494 2-octaprenyl-6-methox 99.9 5E-25 1.1E-29 192.2 23.3 216 17-247 5-226 (388)
19 PRK06183 mhpA 3-(3-hydroxyphen 99.9 9E-25 2E-29 197.8 25.6 221 17-249 8-237 (538)
20 PRK06847 hypothetical protein; 99.9 1E-24 2.2E-29 189.4 24.5 219 19-250 4-225 (375)
21 PRK07333 2-octaprenyl-6-methox 99.9 8.7E-25 1.9E-29 191.6 23.5 218 19-247 1-226 (403)
22 PRK08244 hypothetical protein; 99.9 1.6E-24 3.4E-29 194.5 25.5 212 19-248 2-219 (493)
23 PRK08849 2-octaprenyl-3-methyl 99.9 1.7E-24 3.6E-29 188.5 23.6 213 19-242 3-221 (384)
24 PRK07045 putative monooxygenas 99.9 2.8E-24 6E-29 187.5 24.8 219 18-251 4-230 (388)
25 PF01494 FAD_binding_3: FAD bi 99.9 1.4E-24 3E-29 186.7 22.2 223 20-250 2-239 (356)
26 TIGR01984 UbiH 2-polyprenyl-6- 99.9 1.6E-24 3.4E-29 188.7 22.4 217 21-248 1-223 (382)
27 PRK06184 hypothetical protein; 99.9 2.5E-24 5.4E-29 193.5 24.0 213 18-242 2-224 (502)
28 KOG2614 Kynurenine 3-monooxyge 99.9 1E-24 2.3E-29 182.1 19.0 217 20-251 3-225 (420)
29 TIGR01988 Ubi-OHases Ubiquinon 99.9 3.9E-24 8.3E-29 186.3 23.3 218 21-249 1-224 (385)
30 PRK05714 2-octaprenyl-3-methyl 99.9 2.9E-24 6.3E-29 188.4 22.0 211 19-240 2-220 (405)
31 PLN02985 squalene monooxygenas 99.9 1.1E-23 2.3E-28 188.5 24.5 221 16-251 40-270 (514)
32 PRK05732 2-octaprenyl-6-methox 99.9 7.4E-24 1.6E-28 185.2 22.9 220 18-248 2-229 (395)
33 PRK08294 phenol 2-monooxygenas 99.9 1.6E-23 3.4E-28 191.8 25.7 221 17-248 30-274 (634)
34 PRK06185 hypothetical protein; 99.9 4.6E-24 1E-28 187.2 20.7 219 15-248 2-228 (407)
35 PTZ00367 squalene epoxidase; P 99.9 1.1E-23 2.3E-28 189.5 23.4 217 16-251 30-283 (567)
36 PRK07608 ubiquinone biosynthes 99.9 1.1E-23 2.4E-28 183.7 22.7 218 18-248 4-227 (388)
37 PRK08020 ubiF 2-octaprenyl-3-m 99.9 2.3E-23 5E-28 181.9 24.2 216 18-245 4-226 (391)
38 PRK07190 hypothetical protein; 99.9 1.4E-22 3E-27 180.6 25.5 217 18-247 4-226 (487)
39 PRK06996 hypothetical protein; 99.9 1.3E-22 2.8E-27 177.4 22.8 209 16-241 8-228 (398)
40 PRK06126 hypothetical protein; 99.9 2.1E-22 4.6E-27 182.8 24.7 172 16-193 4-195 (545)
41 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 2.3E-22 5.1E-27 175.2 23.4 216 19-249 2-226 (390)
42 PRK08243 4-hydroxybenzoate 3-m 99.9 3.5E-22 7.7E-27 174.4 24.0 216 19-249 2-226 (392)
43 PRK06834 hypothetical protein; 99.9 1.1E-21 2.4E-26 175.0 24.8 209 18-247 2-214 (488)
44 PRK08132 FAD-dependent oxidore 99.9 8.2E-21 1.8E-25 172.4 25.3 166 17-193 21-192 (547)
45 TIGR02032 GG-red-SF geranylger 99.9 1.2E-20 2.5E-25 158.4 19.8 208 20-250 1-215 (295)
46 COG0644 FixC Dehydrogenases (f 99.9 3.3E-20 7.1E-25 162.0 20.4 212 18-252 2-220 (396)
47 PLN00093 geranylgeranyl diphos 99.9 1.2E-19 2.5E-24 160.2 24.0 204 17-246 37-261 (450)
48 KOG1298 Squalene monooxygenase 99.9 1.4E-20 3E-25 155.4 15.5 224 15-252 41-272 (509)
49 PRK11445 putative oxidoreducta 99.8 1.8E-19 3.9E-24 155.0 20.9 159 20-194 2-165 (351)
50 TIGR02023 BchP-ChlP geranylger 99.8 6.3E-19 1.4E-23 153.7 21.5 200 20-246 1-218 (388)
51 TIGR02028 ChlP geranylgeranyl 99.8 9.2E-18 2E-22 146.6 22.5 201 20-246 1-222 (398)
52 PLN02463 lycopene beta cyclase 99.8 1.1E-17 2.3E-22 147.2 19.5 146 18-190 27-173 (447)
53 PRK10157 putative oxidoreducta 99.8 1.7E-17 3.7E-22 146.2 19.6 161 18-193 4-171 (428)
54 PRK10015 oxidoreductase; Provi 99.8 1.9E-17 4.1E-22 145.8 18.9 163 18-193 4-171 (429)
55 PF04820 Trp_halogenase: Trypt 99.8 5.4E-17 1.2E-21 143.5 20.3 221 21-251 1-277 (454)
56 PLN02697 lycopene epsilon cycl 99.7 5.2E-16 1.1E-20 138.7 21.8 195 17-244 106-319 (529)
57 PF01266 DAO: FAD dependent ox 99.7 1E-15 2.2E-20 131.7 18.9 170 21-192 1-209 (358)
58 KOG3855 Monooxygenase involved 99.7 5.7E-16 1.2E-20 129.4 16.5 221 17-246 34-279 (481)
59 TIGR01790 carotene-cycl lycope 99.7 2.1E-15 4.6E-20 131.6 20.3 145 21-192 1-147 (388)
60 PF05834 Lycopene_cycl: Lycope 99.7 5.5E-15 1.2E-19 128.1 21.1 140 21-187 1-143 (374)
61 PRK11728 hydroxyglutarate oxid 99.7 2.7E-15 5.9E-20 131.1 17.8 172 19-192 2-210 (393)
62 PRK08255 salicylyl-CoA 5-hydro 99.7 2.5E-15 5.4E-20 141.0 16.3 142 21-193 2-148 (765)
63 TIGR01789 lycopene_cycl lycope 99.7 1.5E-14 3.2E-19 125.1 19.5 187 21-246 1-195 (370)
64 COG2081 Predicted flavoprotein 99.7 6.3E-16 1.4E-20 129.6 10.4 159 18-188 2-169 (408)
65 PRK11259 solA N-methyltryptoph 99.7 1.3E-14 2.8E-19 126.1 19.0 59 127-187 144-205 (376)
66 PRK13369 glycerol-3-phosphate 99.7 2.7E-14 5.9E-19 128.4 21.2 169 17-189 4-218 (502)
67 TIGR01377 soxA_mon sarcosine o 99.6 1.2E-14 2.7E-19 126.5 18.0 171 20-192 1-207 (380)
68 PRK01747 mnmC bifunctional tRN 99.6 2.1E-14 4.6E-19 133.2 20.6 169 19-187 260-464 (662)
69 PRK12266 glpD glycerol-3-phosp 99.6 3.9E-14 8.4E-19 127.4 19.5 60 128-188 151-218 (508)
70 PRK12409 D-amino acid dehydrog 99.6 3.2E-14 7E-19 125.1 18.1 62 128-190 193-262 (410)
71 TIGR03329 Phn_aa_oxid putative 99.6 2.4E-14 5.3E-19 127.5 15.6 173 12-187 17-238 (460)
72 COG0579 Predicted dehydrogenas 99.6 3.9E-14 8.4E-19 122.2 16.0 178 18-195 2-220 (429)
73 PRK04176 ribulose-1,5-biphosph 99.6 1.4E-14 2.9E-19 118.9 12.1 137 17-193 23-180 (257)
74 TIGR01373 soxB sarcosine oxida 99.6 1E-13 2.2E-18 121.9 17.8 229 9-246 20-295 (407)
75 TIGR00292 thiazole biosynthesi 99.6 8.8E-14 1.9E-18 113.7 15.0 136 17-192 19-176 (254)
76 TIGR03364 HpnW_proposed FAD de 99.6 2.4E-13 5.3E-18 117.7 16.6 161 20-187 1-198 (365)
77 PRK00711 D-amino acid dehydrog 99.5 4.8E-13 1E-17 117.9 18.2 60 127-188 196-259 (416)
78 PLN02464 glycerol-3-phosphate 99.5 4.1E-13 8.9E-18 123.3 16.6 113 127-245 227-355 (627)
79 COG0665 DadA Glycine/D-amino a 99.5 1.4E-12 3E-17 113.8 18.8 177 17-194 2-220 (387)
80 PRK11101 glpA sn-glycerol-3-ph 99.5 3.6E-13 7.8E-18 122.2 14.1 172 18-194 5-219 (546)
81 PRK13339 malate:quinone oxidor 99.5 7.2E-13 1.6E-17 117.7 14.6 70 123-192 175-253 (497)
82 PF03486 HI0933_like: HI0933-l 99.5 4.1E-13 8.9E-18 116.7 12.8 142 20-187 1-167 (409)
83 COG1635 THI4 Ribulose 1,5-bisp 99.5 5.4E-13 1.2E-17 103.1 11.6 136 19-193 30-185 (262)
84 PF13738 Pyr_redox_3: Pyridine 99.5 3.2E-13 6.8E-18 107.3 9.6 134 23-189 1-141 (203)
85 PF01946 Thi4: Thi4 family; PD 99.5 9.4E-13 2E-17 102.2 11.3 138 18-192 16-171 (230)
86 TIGR01320 mal_quin_oxido malat 99.5 2.5E-12 5.4E-17 114.8 15.2 69 123-192 169-246 (483)
87 COG0578 GlpA Glycerol-3-phosph 99.4 9.3E-12 2E-16 109.8 18.3 173 17-193 10-232 (532)
88 PTZ00383 malate:quinone oxidor 99.4 1.1E-12 2.4E-17 116.9 12.0 64 127-191 206-278 (497)
89 PRK05257 malate:quinone oxidor 99.4 4.6E-12 9.9E-17 113.2 14.2 70 123-192 174-252 (494)
90 PRK05192 tRNA uridine 5-carbox 99.4 8.5E-12 1.8E-16 112.2 15.3 154 18-190 3-161 (618)
91 KOG2820 FAD-dependent oxidored 99.4 2.7E-11 5.8E-16 99.4 16.0 167 17-186 5-212 (399)
92 PLN02172 flavin-containing mon 99.4 7.8E-12 1.7E-16 110.9 12.5 147 18-187 9-174 (461)
93 PF01134 GIDA: Glucose inhibit 99.3 7.6E-11 1.6E-15 100.9 15.0 146 21-185 1-151 (392)
94 PRK07804 L-aspartate oxidase; 99.3 6.1E-11 1.3E-15 107.6 15.2 38 17-54 14-51 (541)
95 KOG1399 Flavin-containing mono 99.3 1.4E-11 3E-16 107.7 10.6 140 17-186 4-153 (448)
96 KOG2844 Dimethylglycine dehydr 99.3 4.6E-11 9.9E-16 105.8 13.3 189 16-207 36-264 (856)
97 PF00743 FMO-like: Flavin-bind 99.3 2.4E-11 5.2E-16 109.3 10.8 135 20-187 2-151 (531)
98 TIGR00275 flavoprotein, HI0933 99.3 1.2E-10 2.6E-15 102.0 14.6 151 23-186 1-160 (400)
99 COG2072 TrkA Predicted flavopr 99.3 6.9E-11 1.5E-15 104.4 12.9 135 16-186 5-144 (443)
100 COG3380 Predicted NAD/FAD-depe 99.3 4.7E-11 1E-15 95.3 10.5 146 21-183 3-157 (331)
101 PF12831 FAD_oxidored: FAD dep 99.3 8.8E-12 1.9E-16 110.0 6.4 139 21-184 1-148 (428)
102 TIGR01813 flavo_cyto_c flavocy 99.3 7.4E-11 1.6E-15 104.8 12.3 45 21-65 1-46 (439)
103 PRK06481 fumarate reductase fl 99.2 2.4E-10 5.2E-15 103.0 15.5 37 18-54 60-96 (506)
104 PRK08274 tricarballylate dehyd 99.2 1.8E-10 3.9E-15 103.0 14.0 36 18-53 3-38 (466)
105 TIGR00551 nadB L-aspartate oxi 99.2 6.8E-10 1.5E-14 99.7 16.0 167 19-191 2-194 (488)
106 TIGR01292 TRX_reduct thioredox 99.2 2E-10 4.3E-15 96.7 11.8 110 20-187 1-113 (300)
107 PF13454 NAD_binding_9: FAD-NA 99.2 6.5E-10 1.4E-14 84.5 12.2 58 127-184 89-155 (156)
108 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.3E-10 1.2E-14 102.3 13.7 34 21-54 1-34 (566)
109 PRK09231 fumarate reductase fl 99.2 5.3E-10 1.1E-14 102.3 13.0 59 132-190 133-200 (582)
110 PLN02661 Putative thiazole syn 99.1 9.9E-10 2.2E-14 92.7 13.3 38 17-54 90-128 (357)
111 PRK15317 alkyl hydroperoxide r 99.1 5.3E-10 1.2E-14 101.1 12.4 111 17-186 209-322 (517)
112 PRK06175 L-aspartate oxidase; 99.1 7.3E-10 1.6E-14 97.9 12.9 36 18-54 3-38 (433)
113 PF00890 FAD_binding_2: FAD bi 99.1 6.3E-10 1.4E-14 98.2 12.4 57 130-187 139-204 (417)
114 TIGR00136 gidA glucose-inhibit 99.1 1.3E-09 2.7E-14 98.3 14.1 153 20-192 1-160 (617)
115 PRK06069 sdhA succinate dehydr 99.1 8.5E-10 1.9E-14 101.0 13.3 38 18-55 4-44 (577)
116 PRK05945 sdhA succinate dehydr 99.1 1E-09 2.2E-14 100.4 13.8 36 18-53 2-39 (575)
117 TIGR01176 fum_red_Fp fumarate 99.1 1.2E-09 2.5E-14 99.9 13.8 160 18-189 2-198 (580)
118 PRK08401 L-aspartate oxidase; 99.1 1.8E-09 3.8E-14 96.5 14.5 33 20-52 2-34 (466)
119 PRK07121 hypothetical protein; 99.1 2.8E-09 6E-14 96.0 15.8 37 18-54 19-55 (492)
120 COG0492 TrxB Thioredoxin reduc 99.1 9.9E-10 2.2E-14 92.0 11.8 114 18-190 2-119 (305)
121 PRK07573 sdhA succinate dehydr 99.1 2.6E-09 5.7E-14 98.6 15.3 36 18-53 34-69 (640)
122 PRK08071 L-aspartate oxidase; 99.1 2.5E-09 5.4E-14 96.5 14.0 157 19-188 3-192 (510)
123 PRK06452 sdhA succinate dehydr 99.1 3.6E-09 7.8E-14 96.6 14.8 37 18-54 4-40 (566)
124 TIGR03140 AhpF alkyl hydropero 99.1 2.5E-09 5.3E-14 96.8 13.4 111 17-186 210-323 (515)
125 PRK08641 sdhA succinate dehydr 99.1 5E-09 1.1E-13 96.0 15.4 37 18-54 2-38 (589)
126 KOG2415 Electron transfer flav 99.1 1.3E-08 2.7E-13 86.2 16.1 160 18-193 75-263 (621)
127 PRK07803 sdhA succinate dehydr 99.1 6.2E-09 1.3E-13 96.0 15.7 37 18-54 7-43 (626)
128 KOG2853 Possible oxidoreductas 99.0 1.2E-08 2.5E-13 84.3 14.6 36 18-53 85-124 (509)
129 PTZ00139 Succinate dehydrogena 99.0 7.1E-09 1.5E-13 95.4 14.7 40 18-57 28-67 (617)
130 PRK12842 putative succinate de 99.0 7.5E-09 1.6E-13 94.8 14.5 41 14-54 4-44 (574)
131 PRK06854 adenylylsulfate reduc 99.0 7.2E-09 1.6E-13 95.3 14.4 36 18-53 10-47 (608)
132 PRK06134 putative FAD-binding 99.0 1.4E-08 3.1E-13 93.0 16.2 39 15-53 8-46 (581)
133 PRK07057 sdhA succinate dehydr 99.0 1.6E-08 3.5E-13 92.8 16.3 37 17-53 10-46 (591)
134 TIGR03143 AhpF_homolog putativ 99.0 4.7E-09 1E-13 95.7 12.7 110 19-188 4-116 (555)
135 PLN00128 Succinate dehydrogena 99.0 1.1E-08 2.5E-13 94.2 14.9 38 18-55 49-86 (635)
136 PRK09897 hypothetical protein; 99.0 3.1E-09 6.6E-14 95.5 10.7 39 147-185 126-165 (534)
137 PRK08958 sdhA succinate dehydr 99.0 1.9E-08 4.1E-13 92.2 16.1 37 18-54 6-42 (588)
138 PRK11883 protoporphyrinogen ox 99.0 5.7E-09 1.2E-13 93.0 12.4 55 133-187 222-276 (451)
139 PRK05335 tRNA (uracil-5-)-meth 99.0 5.1E-09 1.1E-13 90.7 11.3 114 20-157 3-126 (436)
140 PRK09078 sdhA succinate dehydr 99.0 1.8E-08 3.8E-13 92.6 15.6 36 18-53 11-46 (598)
141 KOG2852 Possible oxidoreductas 99.0 1.2E-08 2.7E-13 82.3 12.6 163 19-187 10-209 (380)
142 COG1231 Monoamine oxidase [Ami 99.0 6.1E-09 1.3E-13 89.4 11.5 48 135-183 212-259 (450)
143 PLN02568 polyamine oxidase 99.0 1.9E-08 4.2E-13 91.0 15.3 54 131-184 241-294 (539)
144 PRK06263 sdhA succinate dehydr 99.0 1.2E-08 2.6E-13 92.9 14.0 35 18-53 6-40 (543)
145 KOG2665 Predicted FAD-dependen 99.0 5.1E-09 1.1E-13 85.5 9.9 172 17-192 46-263 (453)
146 PRK08010 pyridine nucleotide-d 99.0 6.7E-09 1.4E-13 92.3 11.7 35 18-52 2-36 (441)
147 PLN02815 L-aspartate oxidase 99.0 9.5E-09 2.1E-13 93.9 12.8 37 17-54 27-63 (594)
148 PRK14694 putative mercuric red 99.0 1.9E-08 4.1E-13 90.1 14.6 39 14-52 1-39 (468)
149 PRK07843 3-ketosteroid-delta-1 99.0 2E-08 4.3E-13 91.7 14.4 37 18-54 6-42 (557)
150 PF06039 Mqo: Malate:quinone o 98.9 1.5E-08 3.3E-13 87.4 12.8 66 125-190 174-248 (488)
151 PRK09077 L-aspartate oxidase; 98.9 1.5E-08 3.3E-13 92.0 13.5 37 17-54 6-42 (536)
152 PRK08626 fumarate reductase fl 98.9 1.3E-08 2.8E-13 94.2 13.1 37 18-54 4-40 (657)
153 PRK07395 L-aspartate oxidase; 98.9 1E-08 2.2E-13 93.2 12.2 38 16-54 6-43 (553)
154 PRK08205 sdhA succinate dehydr 98.9 2.5E-08 5.5E-13 91.5 14.6 41 18-59 4-44 (583)
155 COG1232 HemY Protoporphyrinoge 98.9 2.7E-08 5.8E-13 87.0 13.8 52 132-184 215-266 (444)
156 PRK12834 putative FAD-binding 98.9 3.8E-08 8.3E-13 89.8 15.6 35 18-52 3-37 (549)
157 PRK10262 thioredoxin reductase 98.9 1.4E-08 3E-13 86.5 12.0 37 15-51 2-38 (321)
158 PRK05249 soluble pyridine nucl 98.9 4E-08 8.6E-13 87.9 14.2 36 17-52 3-38 (461)
159 TIGR03197 MnmC_Cterm tRNA U-34 98.9 7.5E-08 1.6E-12 84.0 15.2 65 125-189 128-193 (381)
160 PRK08275 putative oxidoreducta 98.9 3.7E-08 8E-13 89.9 13.7 36 18-53 8-45 (554)
161 PRK05976 dihydrolipoamide dehy 98.9 5E-08 1.1E-12 87.5 14.1 34 18-51 3-36 (472)
162 PRK12835 3-ketosteroid-delta-1 98.9 2.3E-08 5.1E-13 91.5 12.1 37 18-54 10-46 (584)
163 PRK06416 dihydrolipoamide dehy 98.9 5E-08 1.1E-12 87.3 13.7 35 18-52 3-37 (462)
164 PLN02676 polyamine oxidase 98.9 7.8E-08 1.7E-12 86.3 14.9 57 131-187 223-287 (487)
165 PF13450 NAD_binding_8: NAD(P) 98.9 3.1E-09 6.7E-14 68.6 4.4 31 24-54 1-31 (68)
166 TIGR01811 sdhA_Bsu succinate d 98.9 3.8E-08 8.2E-13 90.4 13.0 31 22-52 1-31 (603)
167 PLN02507 glutathione reductase 98.9 2.4E-08 5.1E-13 89.9 11.5 35 17-51 23-57 (499)
168 PRK06467 dihydrolipoamide dehy 98.9 3.1E-08 6.8E-13 88.7 12.2 35 18-52 3-37 (471)
169 PRK07512 L-aspartate oxidase; 98.9 3E-08 6.5E-13 89.6 12.1 34 18-53 8-41 (513)
170 PRK12839 hypothetical protein; 98.9 2.1E-07 4.6E-12 85.1 17.6 38 17-54 6-43 (572)
171 PRK12844 3-ketosteroid-delta-1 98.8 4.7E-08 1E-12 89.2 13.1 37 18-54 5-41 (557)
172 PRK12845 3-ketosteroid-delta-1 98.8 8.6E-08 1.9E-12 87.4 14.7 50 17-67 14-63 (564)
173 PRK12837 3-ketosteroid-delta-1 98.8 5.5E-08 1.2E-12 88.0 13.3 35 18-53 6-40 (513)
174 PRK06115 dihydrolipoamide dehy 98.8 6.4E-08 1.4E-12 86.6 13.4 34 18-51 2-35 (466)
175 PRK12843 putative FAD-binding 98.8 1.1E-07 2.3E-12 87.3 15.0 38 17-54 14-51 (578)
176 COG0029 NadB Aspartate oxidase 98.8 6.5E-08 1.4E-12 83.8 12.5 162 21-192 9-202 (518)
177 TIGR01424 gluta_reduc_2 glutat 98.8 1.9E-08 4.1E-13 89.5 9.6 33 19-51 2-34 (446)
178 TIGR01421 gluta_reduc_1 glutat 98.8 3.6E-08 7.9E-13 87.7 11.3 34 19-52 2-35 (450)
179 PTZ00306 NADH-dependent fumara 98.8 1.4E-07 3.1E-12 92.7 16.3 39 16-54 406-444 (1167)
180 PRK12416 protoporphyrinogen ox 98.8 1.7E-08 3.6E-13 90.4 9.0 51 133-183 227-277 (463)
181 PRK06327 dihydrolipoamide dehy 98.8 7.8E-08 1.7E-12 86.3 13.3 33 18-50 3-35 (475)
182 PRK06116 glutathione reductase 98.8 7.1E-08 1.5E-12 86.0 12.8 34 18-51 3-36 (450)
183 PRK06370 mercuric reductase; V 98.8 2E-08 4.3E-13 89.9 9.2 35 18-52 4-38 (463)
184 PRK07818 dihydrolipoamide dehy 98.8 3.6E-08 7.8E-13 88.3 10.7 33 19-51 4-36 (466)
185 PF07992 Pyr_redox_2: Pyridine 98.8 1.6E-08 3.4E-13 80.0 7.4 33 21-53 1-33 (201)
186 PTZ00058 glutathione reductase 98.8 1.4E-08 3E-13 92.2 7.8 38 14-51 43-80 (561)
187 TIGR00137 gid_trmFO tRNA:m(5)U 98.8 7E-08 1.5E-12 84.1 11.7 34 20-53 1-34 (433)
188 PF00070 Pyr_redox: Pyridine n 98.8 1.4E-07 3.1E-12 63.1 10.5 33 21-53 1-33 (80)
189 TIGR02485 CobZ_N-term precorri 98.8 1.1E-07 2.3E-12 84.4 12.8 60 132-192 123-189 (432)
190 PRK13800 putative oxidoreducta 98.8 2.7E-07 5.8E-12 88.8 16.4 37 17-53 11-47 (897)
191 TIGR01350 lipoamide_DH dihydro 98.8 1.5E-07 3.4E-12 84.1 13.5 32 20-51 2-33 (461)
192 PRK14727 putative mercuric red 98.8 2.8E-08 6.2E-13 89.2 8.4 37 16-52 13-49 (479)
193 TIGR02061 aprA adenosine phosp 98.7 2.6E-07 5.5E-12 84.8 14.1 33 21-53 1-37 (614)
194 PRK13748 putative mercuric red 98.7 4.8E-08 1E-12 89.5 8.7 34 18-51 97-130 (561)
195 PRK12779 putative bifunctional 98.7 6.3E-08 1.4E-12 92.9 9.3 35 18-52 305-339 (944)
196 TIGR02352 thiamin_ThiO glycine 98.7 1.7E-06 3.7E-11 74.0 16.9 63 124-188 129-195 (337)
197 COG1053 SdhA Succinate dehydro 98.7 2.1E-07 4.6E-12 84.3 11.2 42 17-58 4-45 (562)
198 PTZ00052 thioredoxin reductase 98.7 1.2E-07 2.6E-12 85.5 9.4 33 19-51 5-37 (499)
199 PF13434 K_oxygenase: L-lysine 98.6 2.6E-07 5.6E-12 79.1 10.5 151 19-192 2-165 (341)
200 PLN02546 glutathione reductase 98.6 1.8E-07 4E-12 85.0 10.1 33 18-50 78-110 (558)
201 PRK09754 phenylpropionate diox 98.6 4E-07 8.7E-12 79.8 11.7 36 18-53 2-39 (396)
202 COG1233 Phytoene dehydrogenase 98.6 3.8E-08 8.1E-13 88.4 4.9 52 132-184 224-279 (487)
203 PRK04965 NADH:flavorubredoxin 98.6 7.2E-07 1.6E-11 77.7 12.8 100 19-187 141-240 (377)
204 COG1249 Lpd Pyruvate/2-oxoglut 98.6 5.2E-07 1.1E-11 79.6 11.7 36 17-52 2-37 (454)
205 PTZ00153 lipoamide dehydrogena 98.6 4.8E-07 1E-11 83.5 11.8 33 19-51 116-148 (659)
206 PTZ00318 NADH dehydrogenase-li 98.6 7.9E-07 1.7E-11 78.7 12.5 36 17-52 8-43 (424)
207 PRK13512 coenzyme A disulfide 98.6 6.2E-07 1.4E-11 79.7 11.1 33 21-53 3-37 (438)
208 COG2907 Predicted NAD/FAD-bind 98.6 5.9E-07 1.3E-11 74.6 10.0 40 146-185 233-272 (447)
209 PRK06912 acoL dihydrolipoamide 98.6 1.6E-06 3.5E-11 77.5 13.5 32 21-52 2-33 (458)
210 TIGR01438 TGR thioredoxin and 98.6 2.9E-07 6.2E-12 82.7 8.6 33 19-51 2-34 (484)
211 PRK07845 flavoprotein disulfid 98.5 2.7E-06 5.9E-11 76.2 14.2 33 20-52 2-34 (466)
212 KOG2404 Fumarate reductase, fl 98.5 2E-06 4.2E-11 70.9 11.9 34 21-54 11-44 (477)
213 TIGR01423 trypano_reduc trypan 98.5 2.6E-07 5.7E-12 82.8 7.7 34 18-51 2-36 (486)
214 KOG0029 Amine oxidase [Seconda 98.5 1.3E-07 2.9E-12 84.4 5.3 39 15-53 11-49 (501)
215 PRK09754 phenylpropionate diox 98.5 2.2E-06 4.9E-11 75.1 12.8 99 19-187 144-242 (396)
216 KOG0685 Flavin-containing amin 98.5 1.2E-06 2.6E-11 75.7 10.6 37 17-53 19-56 (498)
217 PRK05249 soluble pyridine nucl 98.5 2.4E-06 5.3E-11 76.4 13.1 101 19-189 175-275 (461)
218 PRK09564 coenzyme A disulfide 98.5 1.7E-06 3.7E-11 77.1 11.9 33 21-53 2-36 (444)
219 COG1249 Lpd Pyruvate/2-oxoglut 98.5 4E-06 8.6E-11 74.1 13.8 103 17-189 171-275 (454)
220 PRK07208 hypothetical protein; 98.5 1.6E-07 3.5E-12 84.4 5.2 37 17-53 2-38 (479)
221 COG4529 Uncharacterized protei 98.5 9E-07 2E-11 76.9 9.0 153 20-191 2-169 (474)
222 PRK04965 NADH:flavorubredoxin 98.4 2.5E-06 5.5E-11 74.3 11.6 34 20-53 3-38 (377)
223 PRK06416 dihydrolipoamide dehy 98.4 3.6E-06 7.9E-11 75.4 12.8 101 19-189 172-275 (462)
224 PRK07251 pyridine nucleotide-d 98.4 2.3E-07 5.1E-12 82.4 5.0 35 18-52 2-36 (438)
225 COG3349 Uncharacterized conser 98.4 2.6E-07 5.6E-12 80.9 4.8 35 20-54 1-35 (485)
226 TIGR02730 carot_isom carotene 98.4 2.7E-07 5.8E-12 83.3 5.0 60 132-192 229-292 (493)
227 PRK07233 hypothetical protein; 98.4 2.7E-07 5.9E-12 81.7 5.0 53 133-186 199-254 (434)
228 PLN02852 ferredoxin-NADP+ redu 98.4 4.6E-07 1E-11 80.8 6.3 38 17-54 24-63 (491)
229 TIGR01350 lipoamide_DH dihydro 98.4 5.5E-06 1.2E-10 74.2 13.2 101 19-189 170-272 (461)
230 COG3075 GlpB Anaerobic glycero 98.4 4.1E-07 8.9E-12 75.0 5.4 36 18-53 1-36 (421)
231 PRK07846 mycothione reductase; 98.4 4.4E-06 9.5E-11 74.5 12.5 99 19-188 166-264 (451)
232 TIGR02733 desat_CrtD C-3',4' d 98.4 3.4E-07 7.5E-12 82.6 5.3 35 20-54 2-36 (492)
233 PLN02576 protoporphyrinogen ox 98.4 4.4E-07 9.6E-12 82.0 5.9 36 18-53 11-47 (496)
234 COG2509 Uncharacterized FAD-de 98.4 5E-06 1.1E-10 71.6 11.7 56 131-187 172-231 (486)
235 KOG3923 D-aspartate oxidase [A 98.4 1.6E-05 3.4E-10 64.9 13.7 37 19-55 3-46 (342)
236 TIGR03315 Se_ygfK putative sel 98.4 6.2E-07 1.3E-11 85.8 6.0 36 18-53 536-571 (1012)
237 PLN02507 glutathione reductase 98.4 8.2E-06 1.8E-10 73.6 13.0 101 19-189 203-303 (499)
238 PRK06116 glutathione reductase 98.4 8.1E-06 1.8E-10 72.9 12.8 101 19-189 167-268 (450)
239 KOG0042 Glycerol-3-phosphate d 98.3 3.6E-06 7.9E-11 73.8 9.9 42 18-59 66-107 (680)
240 COG0445 GidA Flavin-dependent 98.3 1.1E-06 2.3E-11 77.3 6.6 147 19-185 4-157 (621)
241 TIGR00562 proto_IX_ox protopor 98.3 5.3E-07 1.1E-11 80.7 4.9 50 136-185 229-278 (462)
242 TIGR03377 glycerol3P_GlpA glyc 98.3 1E-05 2.2E-10 73.5 13.0 71 127-198 123-202 (516)
243 PLN02268 probable polyamine ox 98.3 6.1E-07 1.3E-11 79.7 5.0 38 147-184 213-250 (435)
244 PLN02487 zeta-carotene desatur 98.3 1.2E-06 2.6E-11 79.7 6.8 62 18-79 74-147 (569)
245 TIGR00031 UDP-GALP_mutase UDP- 98.3 7E-07 1.5E-11 77.1 5.1 34 20-53 2-35 (377)
246 PRK07251 pyridine nucleotide-d 98.3 1.3E-05 2.9E-10 71.2 13.1 99 19-188 157-255 (438)
247 PRK07845 flavoprotein disulfid 98.3 1.3E-05 2.8E-10 71.9 12.9 101 19-189 177-277 (466)
248 TIGR02734 crtI_fam phytoene de 98.3 5.8E-07 1.3E-11 81.3 4.3 60 132-192 219-282 (502)
249 PRK06292 dihydrolipoamide dehy 98.3 7.4E-07 1.6E-11 79.7 4.9 34 18-51 2-35 (460)
250 TIGR01424 gluta_reduc_2 glutat 98.3 1.4E-05 3E-10 71.3 12.9 100 19-188 166-265 (446)
251 TIGR01421 gluta_reduc_1 glutat 98.3 1.3E-05 2.9E-10 71.4 12.7 101 19-189 166-268 (450)
252 TIGR03452 mycothione_red mycot 98.3 1.3E-05 2.9E-10 71.5 12.7 99 19-188 169-267 (452)
253 TIGR03169 Nterm_to_SelD pyridi 98.3 5.5E-06 1.2E-10 71.8 9.8 33 21-53 1-36 (364)
254 PRK12831 putative oxidoreducta 98.3 1.2E-06 2.5E-11 78.4 5.7 37 17-53 138-174 (464)
255 TIGR02374 nitri_red_nirB nitri 98.3 1.2E-05 2.7E-10 76.4 12.3 99 20-187 141-239 (785)
256 PRK07818 dihydrolipoamide dehy 98.3 2.1E-05 4.5E-10 70.6 13.2 101 19-189 172-276 (466)
257 TIGR03452 mycothione_red mycot 98.2 2.4E-06 5.1E-11 76.3 6.9 32 19-52 2-33 (452)
258 PF13434 K_oxygenase: L-lysine 98.2 4.9E-06 1.1E-10 71.3 8.5 137 17-185 188-340 (341)
259 TIGR02731 phytoene_desat phyto 98.2 1.3E-06 2.8E-11 78.1 5.1 59 21-79 1-71 (453)
260 PRK06567 putative bifunctional 98.2 1.6E-06 3.4E-11 82.1 5.8 35 17-51 381-415 (1028)
261 PF00732 GMC_oxred_N: GMC oxid 98.2 1.2E-06 2.6E-11 73.7 4.4 34 20-53 1-35 (296)
262 PRK06912 acoL dihydrolipoamide 98.2 2.5E-05 5.5E-10 69.9 13.1 101 19-189 170-271 (458)
263 PTZ00363 rab-GDP dissociation 98.2 1.2E-06 2.6E-11 77.4 4.5 36 18-53 3-38 (443)
264 PRK06467 dihydrolipoamide dehy 98.2 2.6E-05 5.7E-10 70.0 13.1 100 19-189 174-277 (471)
265 TIGR02053 MerA mercuric reduct 98.2 1.3E-06 2.8E-11 78.2 4.8 33 20-52 1-33 (463)
266 PRK06115 dihydrolipoamide dehy 98.2 2.6E-05 5.6E-10 70.0 13.0 100 19-188 174-278 (466)
267 TIGR02053 MerA mercuric reduct 98.2 2.3E-05 5E-10 70.2 12.7 101 19-189 166-269 (463)
268 PRK13977 myosin-cross-reactive 98.2 2.9E-06 6.2E-11 76.4 6.5 38 18-55 21-62 (576)
269 PRK07846 mycothione reductase; 98.2 1.4E-05 3E-10 71.3 10.9 32 19-52 1-32 (451)
270 PRK06370 mercuric reductase; V 98.2 3.3E-05 7.1E-10 69.3 13.2 101 19-189 171-274 (463)
271 PRK14989 nitrite reductase sub 98.2 2.2E-05 4.8E-10 74.9 12.5 100 20-188 146-247 (847)
272 PRK09853 putative selenate red 98.2 1.8E-06 3.9E-11 82.5 5.2 37 17-53 537-573 (1019)
273 PTZ00188 adrenodoxin reductase 98.2 2.6E-06 5.5E-11 75.3 5.7 38 18-55 38-76 (506)
274 PRK06327 dihydrolipoamide dehy 98.2 2.9E-05 6.2E-10 69.8 12.6 101 19-189 183-287 (475)
275 PLN02612 phytoene desaturase 98.2 3.3E-06 7.2E-11 77.3 6.6 62 18-79 92-165 (567)
276 PRK05329 anaerobic glycerol-3- 98.2 2.5E-06 5.5E-11 74.9 5.3 34 19-52 2-35 (422)
277 PRK05976 dihydrolipoamide dehy 98.2 3.4E-05 7.4E-10 69.3 12.7 34 19-52 180-213 (472)
278 TIGR02732 zeta_caro_desat caro 98.2 2.1E-06 4.6E-11 77.0 4.8 34 21-54 1-34 (474)
279 TIGR01316 gltA glutamate synth 98.2 3.1E-06 6.6E-11 75.5 5.8 37 17-53 131-167 (449)
280 PRK12778 putative bifunctional 98.2 3.1E-06 6.8E-11 80.2 6.0 37 17-53 429-465 (752)
281 PRK12769 putative oxidoreducta 98.2 2.4E-06 5.3E-11 79.6 5.2 36 18-53 326-361 (654)
282 TIGR03385 CoA_CoA_reduc CoA-di 98.2 4.1E-05 8.9E-10 67.9 12.7 98 19-187 137-234 (427)
283 KOG1335 Dihydrolipoamide dehyd 98.2 1.8E-05 3.9E-10 66.8 9.6 36 18-53 38-73 (506)
284 PRK14989 nitrite reductase sub 98.1 2.3E-05 5.1E-10 74.7 11.7 35 19-53 3-41 (847)
285 PRK12810 gltD glutamate syntha 98.1 3.2E-06 7E-11 75.8 5.7 37 17-53 141-177 (471)
286 PRK12775 putative trifunctiona 98.1 2.6E-06 5.7E-11 82.6 5.2 36 18-53 429-464 (1006)
287 PTZ00052 thioredoxin reductase 98.1 4.2E-05 9.1E-10 69.1 12.6 100 19-189 182-281 (499)
288 COG3634 AhpF Alkyl hydroperoxi 98.1 9E-06 2E-10 67.8 7.4 32 17-48 209-240 (520)
289 COG1252 Ndh NADH dehydrogenase 98.1 1.2E-05 2.6E-10 69.6 8.5 36 18-53 2-39 (405)
290 COG1148 HdrA Heterodisulfide r 98.1 3.1E-06 6.8E-11 73.3 4.7 38 17-54 122-159 (622)
291 PRK11749 dihydropyrimidine deh 98.1 3.9E-06 8.4E-11 75.1 5.5 37 17-53 138-174 (457)
292 TIGR03378 glycerol3P_GlpB glyc 98.1 4.6E-06 9.9E-11 72.6 5.5 34 20-53 1-34 (419)
293 PRK14727 putative mercuric red 98.1 5.6E-05 1.2E-09 68.0 12.6 99 19-189 188-286 (479)
294 PRK13512 coenzyme A disulfide 98.1 4.2E-05 9.1E-10 68.1 11.5 34 19-52 148-181 (438)
295 PRK08010 pyridine nucleotide-d 98.1 7.1E-05 1.5E-09 66.7 13.0 99 19-188 158-256 (441)
296 COG0562 Glf UDP-galactopyranos 98.1 4.7E-06 1E-10 68.7 4.9 35 20-54 2-36 (374)
297 TIGR02374 nitri_red_nirB nitri 98.1 2.2E-05 4.7E-10 74.7 10.1 42 143-187 68-109 (785)
298 TIGR01423 trypano_reduc trypan 98.1 6.5E-05 1.4E-09 67.6 12.6 101 19-189 187-291 (486)
299 PRK12814 putative NADPH-depend 98.1 5.2E-06 1.1E-10 77.3 5.8 37 17-53 191-227 (652)
300 PRK14694 putative mercuric red 98.1 5.9E-05 1.3E-09 67.7 12.4 99 19-189 178-276 (468)
301 TIGR01372 soxA sarcosine oxida 98.1 4.8E-06 1E-10 81.0 5.6 36 18-53 162-197 (985)
302 PLN02529 lysine-specific histo 98.1 7.7E-06 1.7E-10 76.3 6.3 37 17-53 158-194 (738)
303 PRK09564 coenzyme A disulfide 98.1 8.7E-05 1.9E-09 66.1 12.8 34 19-52 149-182 (444)
304 TIGR01438 TGR thioredoxin and 98.0 8.1E-05 1.8E-09 67.0 12.5 99 19-188 180-281 (484)
305 PLN02328 lysine-specific histo 98.0 6.6E-06 1.4E-10 77.2 5.6 37 17-53 236-272 (808)
306 PRK06292 dihydrolipoamide dehy 98.0 6.7E-05 1.5E-09 67.2 11.9 34 19-52 169-202 (460)
307 PRK02106 choline dehydrogenase 98.0 6.8E-06 1.5E-10 75.4 5.1 35 18-52 4-39 (560)
308 TIGR01318 gltD_gamma_fam gluta 98.0 7.3E-06 1.6E-10 73.4 5.2 36 18-53 140-175 (467)
309 TIGR02462 pyranose_ox pyranose 98.0 6.2E-06 1.4E-10 74.4 4.7 35 20-54 1-35 (544)
310 PRK13748 putative mercuric red 98.0 0.0001 2.2E-09 67.7 12.7 98 19-188 270-367 (561)
311 PTZ00058 glutathione reductase 98.0 0.00014 3.1E-09 66.4 13.0 100 19-188 237-338 (561)
312 PRK12809 putative oxidoreducta 98.0 9.1E-06 2E-10 75.6 5.3 36 18-53 309-344 (639)
313 KOG0404 Thioredoxin reductase 98.0 7.9E-05 1.7E-09 58.5 9.3 114 19-186 8-124 (322)
314 COG0446 HcaD Uncharacterized N 97.9 0.00011 2.4E-09 64.5 11.3 99 19-186 136-237 (415)
315 PTZ00153 lipoamide dehydrogena 97.9 0.00018 3.9E-09 66.8 12.8 35 19-53 312-346 (659)
316 KOG1276 Protoporphyrinogen oxi 97.9 1.4E-05 3E-10 68.4 4.5 36 18-53 10-47 (491)
317 TIGR03140 AhpF alkyl hydropero 97.9 0.00013 2.9E-09 66.2 11.2 34 19-52 352-385 (515)
318 TIGR01317 GOGAT_sm_gam glutama 97.9 2.1E-05 4.5E-10 70.8 6.0 36 18-53 142-177 (485)
319 PRK12771 putative glutamate sy 97.9 2.1E-05 4.5E-10 72.2 6.0 37 17-53 135-171 (564)
320 PLN02785 Protein HOTHEAD 97.9 1.8E-05 3.9E-10 72.6 5.5 36 17-53 53-88 (587)
321 PRK12770 putative glutamate sy 97.9 2E-05 4.4E-10 68.0 5.6 36 18-53 17-52 (352)
322 COG0493 GltD NADPH-dependent g 97.9 1.4E-05 3.1E-10 70.7 4.1 35 19-53 123-157 (457)
323 KOG4716 Thioredoxin reductase 97.9 0.00054 1.2E-08 57.2 12.8 42 17-58 17-59 (503)
324 COG2303 BetA Choline dehydroge 97.8 1.8E-05 3.9E-10 72.1 4.7 36 17-52 5-40 (542)
325 COG3486 IucD Lysine/ornithine 97.8 0.00013 2.9E-09 62.2 8.8 152 17-192 3-163 (436)
326 COG3573 Predicted oxidoreducta 97.8 2.9E-05 6.4E-10 64.5 4.6 37 17-53 3-39 (552)
327 KOG2311 NAD/FAD-utilizing prot 97.8 8E-05 1.7E-09 64.7 7.3 149 17-185 26-185 (679)
328 PLN02546 glutathione reductase 97.8 0.00049 1.1E-08 62.9 12.6 34 19-52 252-285 (558)
329 PRK13984 putative oxidoreducta 97.8 4.1E-05 9E-10 70.9 5.7 37 17-53 281-317 (604)
330 PTZ00318 NADH dehydrogenase-li 97.8 0.00045 9.8E-09 61.2 11.9 40 142-186 241-280 (424)
331 PLN03000 amine oxidase 97.7 4.8E-05 1.1E-09 71.8 5.6 50 131-184 380-429 (881)
332 TIGR01810 betA choline dehydro 97.7 2.9E-05 6.3E-10 70.8 4.0 32 21-52 1-33 (532)
333 TIGR01292 TRX_reduct thioredox 97.7 0.0007 1.5E-08 56.8 12.0 34 19-52 141-174 (300)
334 PLN02976 amine oxidase 97.7 6.3E-05 1.4E-09 73.9 5.4 36 18-53 692-727 (1713)
335 PF08491 SE: Squalene epoxidas 97.6 0.00038 8.2E-09 57.0 8.2 75 174-251 1-75 (276)
336 PRK15317 alkyl hydroperoxide r 97.6 0.00077 1.7E-08 61.3 11.0 34 19-52 351-384 (517)
337 PRK10262 thioredoxin reductase 97.6 0.001 2.2E-08 56.7 11.2 34 19-52 146-179 (321)
338 KOG1800 Ferredoxin/adrenodoxin 97.6 0.00011 2.3E-09 62.2 4.8 39 20-58 21-61 (468)
339 COG1252 Ndh NADH dehydrogenase 97.5 0.00044 9.6E-09 60.1 8.1 49 139-192 219-269 (405)
340 COG1206 Gid NAD(FAD)-utilizing 97.4 0.00013 2.8E-09 60.6 3.7 35 19-53 3-37 (439)
341 PF02737 3HCDH_N: 3-hydroxyacy 97.4 0.00017 3.8E-09 56.0 4.1 33 21-53 1-33 (180)
342 KOG3851 Sulfide:quinone oxidor 97.4 0.00013 2.9E-09 60.3 3.5 36 18-53 38-75 (446)
343 KOG0399 Glutamate synthase [Am 97.4 0.00019 4.1E-09 68.3 4.3 36 18-53 1784-1819(2142)
344 KOG1336 Monodehydroascorbate/f 97.3 0.002 4.3E-08 56.3 9.7 100 19-187 213-314 (478)
345 PF01210 NAD_Gly3P_dh_N: NAD-d 97.3 0.0003 6.4E-09 53.4 4.1 32 21-52 1-32 (157)
346 KOG4254 Phytoene desaturase [C 97.3 0.00025 5.3E-09 61.4 3.9 49 143-192 278-327 (561)
347 KOG2960 Protein involved in th 97.3 6.3E-05 1.4E-09 58.6 0.3 39 20-58 77-117 (328)
348 PRK12770 putative glutamate sy 97.3 0.0031 6.8E-08 54.5 10.4 34 19-52 172-206 (352)
349 KOG1238 Glucose dehydrogenase/ 97.2 0.00041 8.9E-09 62.7 4.7 39 16-54 54-93 (623)
350 KOG1335 Dihydrolipoamide dehyd 97.2 0.0022 4.7E-08 54.6 8.6 100 18-187 210-315 (506)
351 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0052 1.1E-07 53.2 11.5 39 143-186 205-243 (364)
352 PRK11749 dihydropyrimidine deh 97.2 0.0048 1E-07 55.3 10.9 34 19-52 273-307 (457)
353 PRK07819 3-hydroxybutyryl-CoA 97.1 0.00068 1.5E-08 56.8 4.8 34 20-53 6-39 (286)
354 PF00743 FMO-like: Flavin-bind 97.1 0.0013 2.9E-08 59.7 7.0 35 18-52 182-216 (531)
355 PF02558 ApbA: Ketopantoate re 97.1 0.00083 1.8E-08 50.5 4.6 31 22-52 1-31 (151)
356 TIGR03143 AhpF_homolog putativ 97.1 0.0072 1.6E-07 55.6 11.5 34 19-52 143-176 (555)
357 COG1251 NirB NAD(P)H-nitrite r 97.1 0.0018 4E-08 59.4 7.3 97 21-186 147-243 (793)
358 PRK06129 3-hydroxyacyl-CoA deh 97.0 0.00077 1.7E-08 57.1 4.4 33 21-53 4-36 (308)
359 PRK07066 3-hydroxybutyryl-CoA 97.0 0.001 2.2E-08 56.4 4.8 34 20-53 8-41 (321)
360 COG0569 TrkA K+ transport syst 97.0 0.001 2.2E-08 53.6 4.5 60 20-79 1-63 (225)
361 PLN02172 flavin-containing mon 97.0 0.0018 3.9E-08 58.0 6.4 35 18-52 203-237 (461)
362 PRK01438 murD UDP-N-acetylmura 97.0 0.0012 2.6E-08 59.6 5.1 35 18-52 15-49 (480)
363 PF00996 GDI: GDP dissociation 97.0 0.0011 2.3E-08 58.5 4.5 37 17-53 2-38 (438)
364 PRK06249 2-dehydropantoate 2-r 96.9 0.0015 3.3E-08 55.4 5.4 34 19-52 5-38 (313)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 96.9 0.00099 2.2E-08 51.9 3.8 33 21-53 2-34 (185)
366 PRK07530 3-hydroxybutyryl-CoA 96.9 0.0015 3.3E-08 54.8 4.7 34 20-53 5-38 (292)
367 PRK08293 3-hydroxybutyryl-CoA 96.9 0.0017 3.7E-08 54.4 4.8 33 20-52 4-36 (287)
368 TIGR03862 flavo_PP4765 unchara 96.8 0.0031 6.6E-08 54.7 6.4 56 128-186 82-141 (376)
369 PRK09260 3-hydroxybutyryl-CoA 96.8 0.0016 3.5E-08 54.6 4.4 34 20-53 2-35 (288)
370 PRK02705 murD UDP-N-acetylmura 96.8 0.0016 3.4E-08 58.4 4.6 33 21-53 2-34 (459)
371 PRK05708 2-dehydropantoate 2-r 96.8 0.0022 4.8E-08 54.2 4.9 33 20-52 3-35 (305)
372 PRK14106 murD UDP-N-acetylmura 96.7 0.0027 5.8E-08 56.8 5.3 35 18-52 4-38 (450)
373 PRK06035 3-hydroxyacyl-CoA deh 96.7 0.0024 5.2E-08 53.6 4.7 34 20-53 4-37 (291)
374 PRK05808 3-hydroxybutyryl-CoA 96.7 0.0025 5.5E-08 53.2 4.7 34 20-53 4-37 (282)
375 TIGR01372 soxA sarcosine oxida 96.6 0.028 6.1E-07 55.2 12.1 34 19-52 317-351 (985)
376 PRK12810 gltD glutamate syntha 96.6 0.032 7E-07 50.2 11.6 34 19-52 281-315 (471)
377 PRK12814 putative NADPH-depend 96.6 0.041 8.9E-07 51.6 12.5 34 19-52 323-357 (652)
378 PRK06719 precorrin-2 dehydroge 96.6 0.0041 9E-08 47.1 4.9 35 17-51 11-45 (157)
379 PF00899 ThiF: ThiF family; I 96.6 0.0038 8.2E-08 46.0 4.5 41 19-59 2-43 (135)
380 TIGR02354 thiF_fam2 thiamine b 96.6 0.0037 7.9E-08 49.4 4.6 36 18-53 20-56 (200)
381 PRK12921 2-dehydropantoate 2-r 96.5 0.0035 7.6E-08 52.9 4.7 30 21-50 2-31 (305)
382 PF13241 NAD_binding_7: Putati 96.5 0.0031 6.7E-08 44.1 3.6 34 18-51 6-39 (103)
383 PRK08229 2-dehydropantoate 2-r 96.5 0.0036 7.9E-08 53.8 4.7 33 20-52 3-35 (341)
384 PRK06522 2-dehydropantoate 2-r 96.5 0.0037 8E-08 52.7 4.7 32 21-52 2-33 (304)
385 TIGR01470 cysG_Nterm siroheme 96.5 0.0043 9.3E-08 49.2 4.6 35 18-52 8-42 (205)
386 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0055 1.2E-07 47.0 4.8 35 18-52 19-53 (168)
387 PRK11064 wecC UDP-N-acetyl-D-m 96.4 0.0041 8.9E-08 54.9 4.6 34 20-53 4-37 (415)
388 PLN02545 3-hydroxybutyryl-CoA 96.4 0.0049 1.1E-07 51.9 4.7 34 20-53 5-38 (295)
389 PRK06718 precorrin-2 dehydroge 96.4 0.0062 1.3E-07 48.2 5.0 34 18-51 9-42 (202)
390 cd05292 LDH_2 A subgroup of L- 96.3 0.006 1.3E-07 51.6 4.8 33 21-53 2-36 (308)
391 COG1004 Ugd Predicted UDP-gluc 96.3 0.0049 1.1E-07 52.9 4.1 33 21-53 2-34 (414)
392 PRK06130 3-hydroxybutyryl-CoA 96.3 0.0062 1.3E-07 51.6 4.9 33 20-52 5-37 (311)
393 PRK15116 sulfur acceptor prote 96.3 0.0067 1.5E-07 50.0 4.8 40 18-57 29-69 (268)
394 PRK00066 ldh L-lactate dehydro 96.3 0.0088 1.9E-07 50.8 5.6 37 16-52 3-41 (315)
395 PRK08268 3-hydroxy-acyl-CoA de 96.3 0.0065 1.4E-07 55.0 5.0 34 20-53 8-41 (507)
396 PRK14619 NAD(P)H-dependent gly 96.2 0.0086 1.9E-07 50.7 5.2 33 20-52 5-37 (308)
397 PLN02695 GDP-D-mannose-3',5'-e 96.2 0.011 2.3E-07 51.5 5.8 48 4-52 7-55 (370)
398 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.2 0.0061 1.3E-07 55.1 4.4 34 20-53 6-39 (503)
399 PRK14618 NAD(P)H-dependent gly 96.2 0.0089 1.9E-07 51.1 5.2 32 21-52 6-37 (328)
400 PF01488 Shikimate_DH: Shikima 96.2 0.012 2.7E-07 43.3 5.2 35 18-52 11-46 (135)
401 PRK14620 NAD(P)H-dependent gly 96.2 0.0073 1.6E-07 51.6 4.6 32 21-52 2-33 (326)
402 TIGR01763 MalateDH_bact malate 96.2 0.0081 1.8E-07 50.8 4.8 33 20-52 2-35 (305)
403 TIGR00518 alaDH alanine dehydr 96.2 0.0077 1.7E-07 52.3 4.7 35 18-52 166-200 (370)
404 PRK04148 hypothetical protein; 96.1 0.0068 1.5E-07 44.3 3.6 34 19-53 17-50 (134)
405 PRK07531 bifunctional 3-hydrox 96.1 0.0082 1.8E-07 54.3 4.9 33 21-53 6-38 (495)
406 PRK07502 cyclohexadienyl dehyd 96.1 0.0094 2E-07 50.5 5.0 35 18-52 5-41 (307)
407 PTZ00082 L-lactate dehydrogena 96.1 0.012 2.6E-07 50.1 5.6 35 19-53 6-41 (321)
408 PF02254 TrkA_N: TrkA-N domain 96.1 0.009 2E-07 42.6 4.1 32 22-53 1-32 (116)
409 PF00056 Ldh_1_N: lactate/mala 96.1 0.013 2.7E-07 43.6 5.0 32 21-52 2-36 (141)
410 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.012 2.7E-07 45.0 4.9 34 18-51 43-77 (168)
411 PF03446 NAD_binding_2: NAD bi 96.1 0.0093 2E-07 45.5 4.2 34 20-53 2-35 (163)
412 TIGR03026 NDP-sugDHase nucleot 96.0 0.0076 1.6E-07 53.2 4.2 33 21-53 2-34 (411)
413 KOG1336 Monodehydroascorbate/f 96.0 0.028 6.1E-07 49.3 7.3 40 142-184 140-179 (478)
414 PRK12475 thiamine/molybdopteri 96.0 0.011 2.3E-07 50.8 4.7 36 18-53 23-59 (338)
415 PF13478 XdhC_C: XdhC Rossmann 96.0 0.0083 1.8E-07 44.2 3.5 32 22-53 1-32 (136)
416 PRK00094 gpsA NAD(P)H-dependen 96.0 0.011 2.4E-07 50.3 4.8 32 21-52 3-34 (325)
417 PRK08644 thiamine biosynthesis 96.0 0.013 2.7E-07 46.8 4.7 36 18-53 27-63 (212)
418 PRK09424 pntA NAD(P) transhydr 96.0 0.01 2.2E-07 53.4 4.6 36 18-53 164-199 (509)
419 COG5044 MRS6 RAB proteins gera 95.9 0.013 2.8E-07 49.8 4.8 37 17-53 4-40 (434)
420 PRK11730 fadB multifunctional 95.9 0.0088 1.9E-07 56.5 4.2 34 20-53 314-347 (715)
421 cd01487 E1_ThiF_like E1_ThiF_l 95.9 0.013 2.9E-07 45.2 4.5 33 21-53 1-34 (174)
422 COG1250 FadB 3-hydroxyacyl-CoA 95.9 0.012 2.5E-07 49.4 4.5 35 19-53 3-37 (307)
423 TIGR03378 glycerol3P_GlpB glyc 95.9 0.041 8.9E-07 48.4 8.0 64 128-192 259-330 (419)
424 TIGR02437 FadB fatty oxidation 95.9 0.0093 2E-07 56.3 4.3 35 19-53 313-347 (714)
425 PRK05675 sdhA succinate dehydr 95.9 0.17 3.6E-06 46.8 12.3 58 131-188 125-191 (570)
426 PF06100 Strep_67kDa_ant: Stre 95.9 0.012 2.7E-07 52.0 4.7 35 19-53 2-40 (500)
427 TIGR02355 moeB molybdopterin s 95.9 0.016 3.5E-07 47.1 5.1 40 18-57 23-63 (240)
428 PRK07688 thiamine/molybdopteri 95.9 0.013 2.9E-07 50.2 4.8 36 18-53 23-59 (339)
429 COG3486 IucD Lysine/ornithine 95.9 0.13 2.8E-06 44.5 10.5 47 146-192 294-346 (436)
430 KOG2304 3-hydroxyacyl-CoA dehy 95.9 0.011 2.3E-07 46.8 3.8 36 18-53 10-45 (298)
431 PRK07417 arogenate dehydrogena 95.9 0.012 2.7E-07 49.1 4.4 32 21-52 2-33 (279)
432 cd00401 AdoHcyase S-adenosyl-L 95.9 0.014 3.1E-07 51.1 4.9 35 19-53 202-236 (413)
433 TIGR01316 gltA glutamate synth 95.8 0.013 2.9E-07 52.4 4.9 34 19-52 272-305 (449)
434 KOG1346 Programmed cell death 95.8 0.041 8.9E-07 47.7 7.4 93 18-183 346-446 (659)
435 PRK05690 molybdopterin biosynt 95.8 0.015 3.3E-07 47.5 4.8 37 18-54 31-68 (245)
436 PRK12831 putative oxidoreducta 95.8 0.014 3.1E-07 52.4 4.9 35 18-52 280-314 (464)
437 TIGR02356 adenyl_thiF thiazole 95.8 0.017 3.6E-07 45.8 4.7 36 18-53 20-56 (202)
438 PRK06223 malate dehydrogenase; 95.7 0.017 3.8E-07 48.8 4.9 33 20-52 3-36 (307)
439 TIGR02441 fa_ox_alpha_mit fatt 95.7 0.012 2.6E-07 55.7 4.2 35 19-53 335-369 (737)
440 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.026 5.5E-07 44.6 5.4 35 18-52 27-61 (200)
441 cd05293 LDH_1 A subgroup of L- 95.7 0.021 4.6E-07 48.4 5.2 34 19-52 3-38 (312)
442 COG1748 LYS9 Saccharopine dehy 95.7 0.017 3.7E-07 50.0 4.6 34 20-53 2-36 (389)
443 cd00757 ThiF_MoeB_HesA_family 95.6 0.019 4.1E-07 46.4 4.7 38 18-55 20-58 (228)
444 PRK08328 hypothetical protein; 95.6 0.02 4.3E-07 46.4 4.6 36 19-54 27-63 (231)
445 PF01593 Amino_oxidase: Flavin 95.6 0.014 3.1E-07 51.2 4.2 47 142-189 222-268 (450)
446 cd01483 E1_enzyme_family Super 95.6 0.022 4.7E-07 42.4 4.5 33 21-53 1-34 (143)
447 TIGR01915 npdG NADPH-dependent 95.6 0.021 4.6E-07 45.8 4.6 32 21-52 2-34 (219)
448 cd05291 HicDH_like L-2-hydroxy 95.5 0.021 4.5E-07 48.4 4.7 33 21-53 2-36 (306)
449 COG1893 ApbA Ketopantoate redu 95.5 0.018 4E-07 48.6 4.2 32 21-52 2-33 (307)
450 PRK08306 dipicolinate synthase 95.5 0.023 4.9E-07 47.9 4.8 35 18-52 151-185 (296)
451 PRK12549 shikimate 5-dehydroge 95.5 0.024 5.1E-07 47.5 4.8 34 19-52 127-161 (284)
452 PRK11154 fadJ multifunctional 95.5 0.016 3.4E-07 54.9 4.1 35 19-53 309-344 (708)
453 TIGR01505 tartro_sem_red 2-hyd 95.4 0.017 3.7E-07 48.5 3.9 33 21-53 1-33 (291)
454 TIGR02440 FadJ fatty oxidation 95.4 0.018 3.8E-07 54.4 4.3 34 20-53 305-339 (699)
455 cd01339 LDH-like_MDH L-lactate 95.4 0.02 4.4E-07 48.3 4.1 31 22-52 1-32 (300)
456 PRK15057 UDP-glucose 6-dehydro 95.4 0.024 5.1E-07 49.6 4.6 32 21-53 2-33 (388)
457 PF00670 AdoHcyase_NAD: S-aden 95.3 0.026 5.6E-07 42.7 4.0 35 19-53 23-57 (162)
458 TIGR00936 ahcY adenosylhomocys 95.3 0.027 5.9E-07 49.3 4.7 36 18-53 194-229 (406)
459 COG1063 Tdh Threonine dehydrog 95.3 0.025 5.4E-07 48.9 4.3 33 21-53 171-204 (350)
460 PTZ00117 malate dehydrogenase; 95.3 0.034 7.4E-07 47.3 5.1 34 19-52 5-39 (319)
461 cd00755 YgdL_like Family of ac 95.2 0.031 6.7E-07 45.2 4.6 37 18-54 10-47 (231)
462 PF01593 Amino_oxidase: Flavin 95.2 0.063 1.4E-06 47.1 7.0 25 29-53 1-25 (450)
463 cd01492 Aos1_SUMO Ubiquitin ac 95.2 0.031 6.8E-07 44.0 4.5 37 18-54 20-57 (197)
464 cd05311 NAD_bind_2_malic_enz N 95.2 0.034 7.4E-07 44.8 4.8 35 18-52 24-61 (226)
465 PLN02353 probable UDP-glucose 95.2 0.028 6E-07 50.4 4.6 34 20-53 2-37 (473)
466 PRK02472 murD UDP-N-acetylmura 95.2 0.033 7.2E-07 49.7 5.1 34 19-52 5-38 (447)
467 cd01485 E1-1_like Ubiquitin ac 95.2 0.034 7.4E-07 43.9 4.5 37 18-54 18-55 (198)
468 COG0686 Ald Alanine dehydrogen 95.2 0.02 4.3E-07 47.6 3.2 35 19-53 168-202 (371)
469 TIGR02853 spore_dpaA dipicolin 95.2 0.036 7.7E-07 46.4 4.8 35 18-52 150-184 (287)
470 PRK04308 murD UDP-N-acetylmura 95.1 0.041 8.8E-07 49.2 5.4 35 19-53 5-39 (445)
471 TIGR03736 PRTRC_ThiF PRTRC sys 95.1 0.037 7.9E-07 45.0 4.6 39 17-55 9-58 (244)
472 TIGR00561 pntA NAD(P) transhyd 95.1 0.036 7.9E-07 49.9 5.0 36 18-53 163-198 (511)
473 PLN02572 UDP-sulfoquinovose sy 95.1 0.051 1.1E-06 48.5 6.0 34 18-51 46-80 (442)
474 PRK08223 hypothetical protein; 95.1 0.035 7.6E-07 46.2 4.5 38 18-55 26-64 (287)
475 cd05191 NAD_bind_amino_acid_DH 95.1 0.064 1.4E-06 36.0 5.1 33 18-50 22-55 (86)
476 PRK15461 NADH-dependent gamma- 95.1 0.03 6.4E-07 47.2 4.2 33 21-53 3-35 (296)
477 cd05290 LDH_3 A subgroup of L- 95.1 0.035 7.6E-07 46.9 4.6 32 21-52 1-34 (307)
478 TIGR02964 xanthine_xdhC xanthi 95.1 0.044 9.6E-07 44.8 5.0 36 18-53 99-134 (246)
479 PRK01710 murD UDP-N-acetylmura 95.1 0.034 7.3E-07 49.9 4.7 33 20-52 15-47 (458)
480 cd01078 NAD_bind_H4MPT_DH NADP 95.1 0.044 9.6E-07 43.0 4.9 35 18-52 27-62 (194)
481 PRK09496 trkA potassium transp 95.0 0.032 6.9E-07 49.9 4.5 33 21-53 2-34 (453)
482 PRK05476 S-adenosyl-L-homocyst 95.0 0.041 8.9E-07 48.5 4.9 36 18-53 211-246 (425)
483 PRK03369 murD UDP-N-acetylmura 95.0 0.036 7.9E-07 50.1 4.7 34 19-52 12-45 (488)
484 PLN02602 lactate dehydrogenase 95.0 0.059 1.3E-06 46.4 5.7 33 20-52 38-72 (350)
485 PTZ00142 6-phosphogluconate de 95.0 0.028 6.1E-07 50.3 3.9 34 20-53 2-35 (470)
486 PRK11199 tyrA bifunctional cho 95.0 0.039 8.4E-07 48.1 4.7 35 18-52 97-132 (374)
487 TIGR02730 carot_isom carotene 94.9 0.094 2E-06 47.5 7.3 35 20-54 1-35 (493)
488 PRK11559 garR tartronate semia 94.9 0.038 8.3E-07 46.5 4.5 34 20-53 3-36 (296)
489 COG0771 MurD UDP-N-acetylmuram 94.9 0.04 8.7E-07 48.7 4.6 36 19-54 7-42 (448)
490 PF03807 F420_oxidored: NADP o 94.9 0.047 1E-06 37.4 4.1 32 21-52 1-36 (96)
491 PRK05600 thiamine biosynthesis 94.9 0.044 9.6E-07 47.6 4.8 36 19-54 41-77 (370)
492 PRK01368 murD UDP-N-acetylmura 94.9 0.045 9.7E-07 49.0 4.9 32 19-51 6-37 (454)
493 PRK00683 murD UDP-N-acetylmura 94.8 0.042 9.1E-07 48.7 4.7 34 20-53 4-37 (418)
494 PRK07326 short chain dehydroge 94.8 0.055 1.2E-06 43.6 4.9 35 18-52 5-40 (237)
495 cd01065 NAD_bind_Shikimate_DH 94.8 0.068 1.5E-06 40.1 5.1 34 19-52 19-53 (155)
496 PRK05597 molybdopterin biosynt 94.7 0.05 1.1E-06 47.1 4.8 37 18-54 27-64 (355)
497 TIGR00872 gnd_rel 6-phosphoglu 94.7 0.041 8.9E-07 46.4 4.1 33 21-53 2-34 (298)
498 PRK07774 short chain dehydroge 94.7 0.067 1.5E-06 43.4 5.4 35 18-52 5-40 (250)
499 PRK00421 murC UDP-N-acetylmura 94.7 0.047 1E-06 49.0 4.7 35 18-52 6-41 (461)
500 cd01484 E1-2_like Ubiquitin ac 94.7 0.053 1.1E-06 43.9 4.5 34 21-54 1-35 (234)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=7.8e-32 Score=243.33 Aligned_cols=235 Identities=86% Similarity=1.380 Sum_probs=183.2
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
.++.+|+||||||+||++|+.|+++|++|+||||.+...+..|.+++++.++++++++|++++.++.+++.+.+......
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999998644344454555789999999999999766778877766543222
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEecc
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 176 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 176 (270)
+..+.+...+.+...++........+.+..+.++|..|.+.|.+.++...++++++|++++.+++++++.+.+|+++++|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aD 238 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGD 238 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcC
Confidence 22223333444444444332222344565678999999999999988776888999999999999999999999999999
Q ss_pred EEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeCC
Q 024233 177 LLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 251 (270)
Q Consensus 177 ~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 251 (270)
+||+|||.||.+|+.+++...+.++++.+|+++++..+..........+.++..++..+|.+++++.|+.+...+
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence 999999999999999988778899999999999876444333333456678888888889988888887766554
No 2
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=2.4e-27 Score=205.78 Aligned_cols=214 Identities=29% Similarity=0.450 Sum_probs=160.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 100 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (270)
+|+||||||+|+++|+.|+++|++|+|+||.+.... . +.++.+.+++++.|+.+ ++++.+...+..... +. +
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~---g~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~~~-~~-~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE-V---GAGIGIGDNVIKKLGNH--DLAKGIKNAGQILST-MN-L 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc-c---ccceeeChHHHHHHHhc--ChHHHHHhcCCcccc-ee-E
Confidence 899999999999999999999999999999975432 2 23688999999999999 888888765433221 11 2
Q ss_pred ccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEe
Q 024233 101 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVG 180 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 180 (270)
.+ ..+......+. ..+ +..+.++|..|.+.|.+.+....++++++|++++.+++++.+++.+|+++++|+||+
T Consensus 74 ~~-~~g~~~~~~~~-----~~~-~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vig 146 (373)
T PRK06753 74 LD-DKGTLLNKVKL-----KSN-TLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIG 146 (373)
T ss_pred Ec-CCCCEEeeccc-----ccC-CccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEE
Confidence 22 12322222111 111 234789999999999998765559999999999998899999999999999999999
Q ss_pred cCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeC
Q 024233 181 ADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 181 AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
|||.+|.+|+.+.....+.+.++.++++....... ........+++++++++++|++++++.|++....
T Consensus 147 adG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~ 215 (373)
T PRK06753 147 ADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINA 215 (373)
T ss_pred CCCcchHHHHHhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEecc
Confidence 99999999999976556677788888876543211 1122334556777888999999999888876643
No 3
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.96 E-value=1.2e-27 Score=208.33 Aligned_cols=216 Identities=25% Similarity=0.283 Sum_probs=156.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
.+||+||||||+||++|+.|+++|++|+|||+.+......+ .++.++++++++|+++ |+.+.+...+........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~---r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSPNALRALERL--GLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc---eeeeecHhHHHHHHHc--CChhhhhhccCCceeeEE
Confidence 47999999999999999999999999999999943333333 4788999999999999 666777776654433332
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEc-CCcEEe
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE-NGQCYA 174 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~-~g~~~~ 174 (270)
+.. .+.....++... ..+.+.++.+.+..|.+.|.+++.. -.++.+++|+.++.+++.+.+++. +|++++
T Consensus 77 -~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 77 -VDD--GGRRLLIFDAAE---LGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred -Eec--CCceeEEecccc---cCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 221 121233333222 1114446999999999999999742 249999999999999999988888 999999
Q ss_pred ccEEEecCCCCchhhcccc-CCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEE
Q 024233 175 GDLLVGADGIWSKVRKNLF-GPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 247 (270)
Q Consensus 175 ad~vI~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 247 (270)
||+||+|||.+|.+|+.+. ...........++..... +..+.......++.+.+.+.++|+++++...+++
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 222 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVE--PEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWS 222 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEee--cCCCCCCeEEEEecCCCceEEEecCCCceeEEEE
Confidence 9999999999999999996 222221223333333332 2234445566788899999999999655433333
No 4
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.96 E-value=1.8e-26 Score=201.94 Aligned_cols=220 Identities=24% Similarity=0.312 Sum_probs=156.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.+|+||||||+|+++|+.|+++|++|+|+||.+... .. +.++.+.++++++|+++ ++++.+...+.... .+ .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~-~~---g~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~~-~~-~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS-EV---GAGLQLAPNAMRHLERL--GVADRLSGTGVTPK-AL-Y 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC-cC---CccceeChhHHHHHHHC--CChHHHhhcccCcc-eE-E
Confidence 689999999999999999999999999999986432 22 24788999999999999 88899877654332 11 1
Q ss_pred cccCCCCceeEeecCCcc-cccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEc---CCcE
Q 024233 100 LVDGISGSWYIKFDTFTP-AAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE---NGQC 172 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~---~g~~ 172 (270)
+.++.........+.... ....+.++ ..++|..|.+.|.+++.. ..++++++|+++..+++++++++. ++++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~ 153 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPY-IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET 153 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCc-eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE
Confidence 222222211111111110 11123343 578999999999998632 248999999999988888887763 3457
Q ss_pred EeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCC--Ccc-----cccCceEEEeeCCceEEEEeCCCCeEEEE
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFV--PAD-----IESVGYRVFLGHKQYFVSSDVGAGKMQWY 245 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 245 (270)
++||+||+|||.+|.+|+.+. ...+.|.++.+|++.+... +.. .+......|++++++++.+|++++.+.++
T Consensus 154 ~~adlvIgADG~~S~vR~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAG-FSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNF 232 (400)
T ss_pred EecCEEEECCCccHhHHhhcC-CCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEE
Confidence 999999999999999999983 4567788889988875431 111 11223456778999999999999876555
Q ss_pred EEEe
Q 024233 246 AFNK 249 (270)
Q Consensus 246 ~~~~ 249 (270)
+...
T Consensus 233 ~~~~ 236 (400)
T PRK06475 233 VAIT 236 (400)
T ss_pred EEEE
Confidence 5443
No 5
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=201.19 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=148.3
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
..++..+|+|||||++||++|+.|+++|++|+||||.+...... ++++.+.++++++|+++ ++.+.. ..+....
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~---g~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~ 75 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGR---GAGIVLQPELLRALAEA--GVALPA-DIGVPSR 75 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCC---CceeEeCHHHHHHHHHc--CCCccc-ccccCcc
Confidence 34566899999999999999999999999999999986433222 23688999999999999 554432 2221111
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEe
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 174 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 174 (270)
.. .+.+ ..+......+ .+. ..+.+..+.+.|.+.++...++++++|++++.+++++++.+.+|++++
T Consensus 76 ~~--~~~~-~~g~~~~~~~---------~~~-~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 142 (386)
T PRK07236 76 ER--IYLD-RDGRVVQRRP---------MPQ-TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRET 142 (386)
T ss_pred ce--EEEe-CCCCEeeccC---------CCc-cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 11 1111 1222111111 111 235688899999988765559999999999999899999999999999
Q ss_pred ccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCC--ccc---ccCceEEEeeCCceEEEEeCCC
Q 024233 175 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP--ADI---ESVGYRVFLGHKQYFVSSDVGA 239 (270)
Q Consensus 175 ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~p~~~ 239 (270)
||+||+|||.+|.+|+.+.+...+.|.++.+|.+++.... ... ....+..+++++.+++.+|+++
T Consensus 143 ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (386)
T PRK07236 143 ADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG 212 (386)
T ss_pred eCEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence 9999999999999999997766788899888888754311 111 1123456667888899999875
No 6
>PRK08013 oxidoreductase; Provisional
Probab=99.95 E-value=2.4e-26 Score=201.06 Aligned_cols=220 Identities=16% Similarity=0.149 Sum_probs=148.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCC--cccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~--~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
.+||+||||||+|+++|+.|+++|++|+|||+.+.+....+. ......++++++++|+++ |+++.+...+......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL--GVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc--CCchhhhhhcCccccE
Confidence 589999999999999999999999999999998754322221 112356899999999999 8888887654322222
Q ss_pred ccccccCCCCceeEeecCCcccccCCCC-eEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQC 172 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~ 172 (270)
.. +++... .....++. ...+.+ .++.++|..|.+.|.+++.. -.++++++|++++.+++++.+++.+|++
T Consensus 81 ~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~ 154 (400)
T PRK08013 81 ME-VWDKDS-FGRIAFDD----QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSM 154 (400)
T ss_pred EE-EEeCCC-CceEEEcc----cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCE
Confidence 21 222111 11111211 112222 25789999999999988633 2488999999999988999999999999
Q ss_pred EeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCe-EEEEEEE
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFN 248 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-~~~~~~~ 248 (270)
++||+||+|||.+|.+|+.+..........+.++...+.. ..+.......++.++++++++|+++++ ..+++..
T Consensus 155 i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 229 (400)
T PRK08013 155 LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRT--EEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSL 229 (400)
T ss_pred EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEec--cCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEc
Confidence 9999999999999999999843222222233333333322 112222234455677788999998875 4454443
No 7
>PRK07588 hypothetical protein; Provisional
Probab=99.95 E-value=5.6e-26 Score=198.34 Aligned_cols=220 Identities=18% Similarity=0.286 Sum_probs=153.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.||+||||||+|+++|+.|+++|++|+||||.+... ..+ .++.+.++++++|+++ ++++.+.+.+..... + .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g---~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~-~-~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TGG---YMVDFWGVGYEVAKRM--GITDQLREAGYQIEH-V-R 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CCC---eEEeccCcHHHHHHHc--CCHHHHHhccCCccc-e-E
Confidence 389999999999999999999999999999986432 222 3577889999999999 888988876543322 1 1
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCc-cEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE-IILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+++ ..+.....++........+.++ +.++|..|.+.|.+++... .++++++|++++.+++++.+.+++|+++++|+|
T Consensus 73 ~~~-~~g~~~~~~~~~~~~~~~g~~~-~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~v 150 (391)
T PRK07588 73 SVD-PTGRRKADLNVDSFRRMVGDDF-TSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLV 150 (391)
T ss_pred EEc-CCCCEEEEecHHHccccCCCce-EEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEE
Confidence 222 2333333333221112233343 6899999999998876442 499999999999999999999999999999999
Q ss_pred EecCCCCchhhccccCCCC--ccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeC
Q 024233 179 VGADGIWSKVRKNLFGPQE--AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 179 I~AdG~~S~vr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
|+|||.+|.+|+.+.+... +.+.+...+........ .........|.+++.++.++|+++++..+++....
T Consensus 151 IgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 223 (391)
T PRK07588 151 IGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYR-PRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRA 223 (391)
T ss_pred EECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCC-CCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEc
Confidence 9999999999998754332 23444333332221111 11122234555678899999999998655555443
No 8
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=7e-26 Score=196.45 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=146.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+||||||+|+++|+.|+++|++|+|+|+.+..........+++.++++++++|+++ ++|+.+.+...... .+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~~- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI--DIWEELEKFVAEMQ-DIY- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC--CcHHHHHhhcCCCc-EEE-
Confidence 69999999999999999999999999999997532211111234688999999999999 88988866543222 221
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcEEecc
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 176 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 176 (270)
+++ ..+.....++.. ...+.++.++|..|.+.|.+++.. ..++.+++++++..+++++.+.+.++ +++||
T Consensus 78 ~~~-~~g~~~~~~~~~-----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ad 150 (374)
T PRK06617 78 VVD-NKASEILDLRND-----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCN 150 (374)
T ss_pred EEE-CCCceEEEecCC-----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeC
Confidence 222 223333333321 123347899999999999998633 23788999999999889999999776 89999
Q ss_pred EEEecCCCCchhhccccCCC-CccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCe
Q 024233 177 LLVGADGIWSKVRKNLFGPQ-EAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 241 (270)
Q Consensus 177 ~vI~AdG~~S~vr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 241 (270)
+||+|||.+|.+|+.+.... .+.| +.++...+.. ..+.......+|.+.+.++++|++++.
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y--~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~lPl~~~~ 212 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY--QTALTFNIKH--EKPHENCAMEHFLPLGPFALLPLKDQY 212 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC--CeEEEEEEec--cCCCCCEEEEEecCCCCEEEeECCCCC
Confidence 99999999999999885433 2333 4444444332 112222233466677889999999886
No 9
>PRK05868 hypothetical protein; Validated
Probab=99.95 E-value=1.1e-25 Score=194.72 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=148.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.||+||||||+|+++|+.|+++|++|+|||+.+... ..| .++.+.++++++|+++ ++++.+.+.+..... +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g---~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~~~-~~- 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGG---QAIDVRGPALDVLERM--GLLAAAQEHKTRIRG-AS- 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCc---eeeeeCchHHHHHHhc--CCHHHHHhhccCccc-eE-
Confidence 489999999999999999999999999999996532 222 3578899999999999 788888765543222 11
Q ss_pred cccCCCCceeEeecCCc-ccccCCCCeEEEEeHHHHHHHHHHhcCCc-cEEeCceEEEEEecCCeEEEEEcCCcEEeccE
Q 024233 100 LVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVGDE-IILNESNVIDFKDHGDKVSVVLENGQCYAGDL 177 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~ 177 (270)
+.+ ..+.......... .....+.+ ...+.|..|.+.|.+.+... .++++++|++++.+++++++++++|++++||+
T Consensus 74 ~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 74 FVD-RDGNELFRDTESTPTGGPVNSP-DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEe-CCCCEEeecccccccCCCCCCc-eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 222 2233222211110 01111222 35788999999988765333 39999999999988889999999999999999
Q ss_pred EEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEE-EeeCCceEEEEeCCCCe-EEEEEEEe
Q 024233 178 LVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGK-MQWYAFNK 249 (270)
Q Consensus 178 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~g~-~~~~~~~~ 249 (270)
||+|||.+|.+|+.+++...+.......+..+... +.......... +++++.++.++|..++. .+.++.+.
T Consensus 152 vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
T PRK05868 152 VIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTV-PNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFM 224 (372)
T ss_pred EEECCCCCchHHHHhcCCcccceeecceEEEEEEc-CCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEe
Confidence 99999999999999965443322222233333221 22212222333 45788888999998765 34444443
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=5.1e-26 Score=199.38 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=152.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcccc-CCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~-~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.... .......+..++++++++|+++ |+++.+.+........+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL--GAWQGIEARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC--CchhhhhhhhCCcccEE
Confidence 57999999999999999999999999999999732111 1100122467999999999999 89999876532222222
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcEEe
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYA 174 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 174 (270)
. +++.. ......++.. .....+.++.+.+..|.+.|.+++.. ..++++++|++++.+++.+.+.+.+|++++
T Consensus 82 ~-~~~~~-~~~~~~~~~~---~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 82 E-VWEQD-SFARIEFDAE---SMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred E-EEeCC-CCceEEEecc---ccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 1 22211 1111222211 11112346789999999999887632 248889999999998889999999999999
Q ss_pred ccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCe-EEEEEEE
Q 024233 175 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFN 248 (270)
Q Consensus 175 ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-~~~~~~~ 248 (270)
||+||+|||.+|.+|+.+.........++.++.+.+... .+.......+|+++++++++|++++. ++|++..
T Consensus 157 a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~ 229 (405)
T PRK08850 157 AKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTV--DPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWST 229 (405)
T ss_pred eCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc--CCCCCEEEEEEcCCCceEEEECCCCCeEEEEEEC
Confidence 999999999999999998543333334556666655431 22233445678888999999998765 4444443
No 11
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.5e-25 Score=196.06 Aligned_cols=221 Identities=29% Similarity=0.418 Sum_probs=158.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
++.||+||||||+|+++|+.|+++|++|+||||.+... .. +.++.+.|++.++|+++ ++++.+...+..... +
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~-~~---g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~~~-~ 75 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG-EI---GAGIQLGPNAFSALDAL--GVGEAARQRAVFTDH-L 75 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc-cc---cceeeeCchHHHHHHHc--CChHHHHhhccCCcc-e
Confidence 35799999999999999999999999999999996432 22 34789999999999999 788887765533221 1
Q ss_pred cccccCCCCceeEeecCCc-ccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 98 NGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
.+.+...+......+... .....+.+. ..++|..|.+.|.+.+.. ..++++++|+++..+++++.+.+.+|+++
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 76 -TMMDAVDAEEVVRIPTGQAFRARFGNPY-AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRW 153 (396)
T ss_pred -EEEeCCCCCEEEEeccchhHHHhcCCcE-EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEE
Confidence 122222333333332211 111234443 678999999999988632 24888999999998888899999999899
Q ss_pred eccEEEecCCCCchhhccccCCCCccccceEeEeeeecCC--CcccccCceEEEeeCCceEEEEeCCCCeE-EEEEEE
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFV--PADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFN 248 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~g~~-~~~~~~ 248 (270)
+||+||+|||.+|.+|+.+.+. .+.+.++.++++.+... +.........++.+++.+++.+|+.+|.. .+++..
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~ 230 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTF 230 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEE
Confidence 9999999999999999998644 55677777777765431 11111222456777888999999998874 444443
No 12
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.95 E-value=1.4e-25 Score=198.12 Aligned_cols=219 Identities=19% Similarity=0.182 Sum_probs=151.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHh----CCCcEEEEeccCccccC-------CC-CcccceeechhHHHHHHHcCcChHHHHH
Q 024233 20 LRILVAGGGIGGLVFALAAKR----KGFEVLVFEKDMSAIRG-------EG-QYRGPIQIQSNALAALEAIDLDVAEEVM 87 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~----~g~~V~viE~~~~~~~~-------~g-~~~~~~~l~~~~~~~l~~~~~~~~~~l~ 87 (270)
+||+||||||+|+++|+.|++ +|++|+|||+.+.+... .+ ...+++.++++++++|+++ ++++.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--G~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--GAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc--Cchhhhh
Confidence 699999999999999999999 89999999996432211 11 1234688999999999999 8999997
Q ss_pred HhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC-----ccEEeCceEEEEEe----
Q 024233 88 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-----EIILNESNVIDFKD---- 158 (270)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-----~~i~~~~~v~~i~~---- 158 (270)
+........+. +++. .......++... ...+.++.+++..|.+.|.+++.. ..++++++|++++.
T Consensus 79 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~----~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 79 SDRIQPFGRMQ-VWDG-CSLALIRFDRDN----GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhcCCceeeEE-EecC-CCCceEEeecCC----CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 65432222222 2222 222223333211 123446889999999999887521 24889999999975
Q ss_pred ---cCCeEEEEEcCCcEEeccEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEE
Q 024233 159 ---HGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 234 (270)
Q Consensus 159 ---~~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (270)
+++++++++.+|++++||+||+|||.+|.+|+.+... ....|.+...+. .+... ..........+|.+++.+++
T Consensus 153 ~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~-~v~~~-~~~~~~~~~~~f~~~g~~~~ 230 (437)
T TIGR01989 153 PNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA-TLKLE-EATENDVAWQRFLPTGPIAL 230 (437)
T ss_pred ccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE-EEEcc-cCCCCCeEEEEECCCCCEEE
Confidence 2467889999999999999999999999999988432 334454443333 33221 11222334455678899999
Q ss_pred EeCCCCeEEEEEEE
Q 024233 235 SDVGAGKMQWYAFN 248 (270)
Q Consensus 235 ~p~~~g~~~~~~~~ 248 (270)
+|+++++.+|++..
T Consensus 231 lPl~~~~~~~~~~~ 244 (437)
T TIGR01989 231 LPLPDNNSTLVWST 244 (437)
T ss_pred eECCCCCEEEEEeC
Confidence 99999987766555
No 13
>PRK07538 hypothetical protein; Provisional
Probab=99.95 E-value=3.1e-25 Score=194.88 Aligned_cols=219 Identities=27% Similarity=0.412 Sum_probs=153.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.||+||||||+||++|+.|+++|++|+||||.+... .. +.++.+.|+++++|+++ ++++.+...+..... +.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~---g~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~~~-~~- 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PL---GVGINLLPHAVRELAEL--GLLDALDAIGIRTRE-LA- 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-cc---CcceeeCchHHHHHHHC--CCHHHHHhhCCCCcc-eE-
Confidence 389999999999999999999999999999986432 22 34688999999999999 888888766543221 11
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc----CCccEEeCceEEEEEecCCeEEEEEcCC-----
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----- 170 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~----~~~~i~~~~~v~~i~~~~~~~~v~~~~g----- 170 (270)
+.+ ..+......+. ........| .+.++|..|.+.|.+.+ +...++++++|++++.+++++.+.+.++
T Consensus 73 ~~~-~~g~~~~~~~~-~~~~~~~~~-~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 73 YFN-RHGQRIWSEPR-GLAAGYDWP-QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDL 149 (413)
T ss_pred EEc-CCCCEEeeccC-CcccCCCCc-eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCcc
Confidence 222 12322222111 111122334 36799999999998874 3334999999999998888777666543
Q ss_pred cEEeccEEEecCCCCchhhccccCCC-CccccceEeEeeeecCCCcccccCceEEEee-CCceEEEEeCCCC-------e
Q 024233 171 QCYAGDLLVGADGIWSKVRKNLFGPQ-EAIFSGYTCYTGIADFVPADIESVGYRVFLG-HKQYFVSSDVGAG-------K 241 (270)
Q Consensus 171 ~~~~ad~vI~AdG~~S~vr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~g-------~ 241 (270)
++++||+||+|||.+|.+|+.+.+.. .+.+.+..+|++..+..+ .......++++ ++..+.++|+.++ .
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~ 227 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPP--FLTGRSMVMAGHLDGKLVVYPISEPVDADGRQL 227 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcc--ccCCCcEEEEcCCCCEEEEEECCCCcccCCceE
Confidence 48999999999999999999996543 678888888888765322 11112223343 4677889998764 4
Q ss_pred EEEEEEEeCC
Q 024233 242 MQWYAFNKEP 251 (270)
Q Consensus 242 ~~~~~~~~~~ 251 (270)
++|++....+
T Consensus 228 ~~w~~~~~~~ 237 (413)
T PRK07538 228 INWVAEVRVD 237 (413)
T ss_pred EEEEEEEcCC
Confidence 7787776544
No 14
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=1.1e-25 Score=197.77 Aligned_cols=215 Identities=23% Similarity=0.369 Sum_probs=153.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+|+||||||+||++|+.|+++| ++|+||||.+... . .++++.+.|+++++|+++ ++.+.+.+...........
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~---~G~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-E---VGAGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQD 75 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-C---CccceeeCccHHHHHHHc--CChhHHHHHhcCCCccCcc
Confidence 7999999999999999999998 5999999986432 2 335789999999999999 7777776554321111100
Q ss_pred ----cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 100 ----LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 100 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
+.+........ . ....+.+. ..++|..|.+.|.+.+....++++++|++++.+++++++.+++|++++|
T Consensus 76 ~~~~~~~~~~~~~~~-~-----~~~~~~~~-~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 148 (414)
T TIGR03219 76 IWFEWRNGSDASYLG-A-----TIAPGVGQ-SSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRC 148 (414)
T ss_pred eeEEEEecCccceee-e-----eccccCCc-ccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEe
Confidence 01111111110 0 00111221 4689999999999998655588999999999988899999999999999
Q ss_pred cEEEecCCCCchhhccccC-----CCCccccceEeEeeeecCCC--cc-----cc---cCceEEEeeCCceEEEEeCCCC
Q 024233 176 DLLVGADGIWSKVRKNLFG-----PQEAIFSGYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGAG 240 (270)
Q Consensus 176 d~vI~AdG~~S~vr~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~p~~~g 240 (270)
|+||+|||.+|.+|+.+++ ...|.++++.+|++++.... .. .+ .....++++++++++++|+.+|
T Consensus 149 d~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 228 (414)
T TIGR03219 149 DLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQG 228 (414)
T ss_pred eEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCC
Confidence 9999999999999999863 24567888899888764210 00 00 1123467788899999999999
Q ss_pred eEE-EEEEE
Q 024233 241 KMQ-WYAFN 248 (270)
Q Consensus 241 ~~~-~~~~~ 248 (270)
+.. |+++.
T Consensus 229 ~~~~~~~~~ 237 (414)
T TIGR03219 229 RLINVVAFI 237 (414)
T ss_pred cEEEEEEEE
Confidence 854 44443
No 15
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=1.8e-25 Score=196.57 Aligned_cols=234 Identities=21% Similarity=0.181 Sum_probs=151.4
Q ss_pred CccccccCCCCCCCCCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCc
Q 024233 1 MKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDL 80 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~ 80 (270)
|-.+-+.||+.++.. +..+||+||||||+|+++|+.|+++|++|+||||.+...... .+.++.++++++++|+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~~~~~~~L~~l-- 75 (415)
T PRK07364 1 MTLTAATSPTLPSTR-SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALSLLSARIFEGI-- 75 (415)
T ss_pred CcccccCCCCCCCCC-ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEechHHHHHHHHC--
Confidence 445566777766543 346899999999999999999999999999999997543221 123578999999999999
Q ss_pred ChHHHHHHhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEE
Q 024233 81 DVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFK 157 (270)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~ 157 (270)
|+++++........... +.+. .+.....+.... ......++.+.+..+.+.|.+++.. ..++++++|++++
T Consensus 76 Gl~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~ 149 (415)
T PRK07364 76 GVWEKILPQIGKFRQIR--LSDA-DYPGVVKFQPTD---LGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVE 149 (415)
T ss_pred ChhhhhHhhcCCccEEE--EEeC-CCCceeeecccc---CCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEE
Confidence 88998876554332111 2221 121122222111 0112234556666788888887532 2378899999999
Q ss_pred ecCCeEEEEEcCC---cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEE
Q 024233 158 DHGDKVSVVLENG---QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 234 (270)
Q Consensus 158 ~~~~~~~v~~~~g---~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (270)
.+++++.+++.++ .+++||+||+|||.+|.+|+.+............++...+.. +.......+. .+.+.+++++
T Consensus 150 ~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~g~~~~ 227 (415)
T PRK07364 150 YQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKH-EAPHNDIAYE-RFWPSGPFAI 227 (415)
T ss_pred ecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEc-cCCCCCEEEE-EecCCCCeEE
Confidence 8888888887642 369999999999999999998843221111122333333321 1111111122 2345677889
Q ss_pred EeCCCCeEEEEEE
Q 024233 235 SDVGAGKMQWYAF 247 (270)
Q Consensus 235 ~p~~~g~~~~~~~ 247 (270)
+|++++..+|++.
T Consensus 228 ~p~~~~~~~~~~~ 240 (415)
T PRK07364 228 LPLPGNRCQIVWT 240 (415)
T ss_pred eECCCCCEEEEEE
Confidence 9999988766544
No 16
>PRK09126 hypothetical protein; Provisional
Probab=99.94 E-value=3.1e-25 Score=193.77 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=152.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC-CCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~-~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+... ....+.++.+.+++.++|+++ ++++.+..........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL--GAWDRIPEDEISPLRD 79 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC--CChhhhccccCCccce
Confidence 4689999999999999999999999999999998653211 111223577899999999999 7888876543322111
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcC---CccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
.. +.++.. .....++.. .......++.+++..+.+.|.+++. ...++++++|++++.+++.+.+.+++|+++
T Consensus 80 ~~-~~~~~~-~~~~~~~~~---~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (392)
T PRK09126 80 AK-VLNGRS-PFALTFDAR---GRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRL 154 (392)
T ss_pred EE-EEcCCC-CceeEeehh---hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEE
Confidence 11 122111 111222110 0111223577899999999888752 124999999999998888888999999999
Q ss_pred eccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeC
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
+||+||+|||.+|.+|+.+.........+..++....... .........|++++.+++++|++++.++|++..+.
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 229 (392)
T PRK09126 155 TARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE--LPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPP 229 (392)
T ss_pred EeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc--CCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCH
Confidence 9999999999999999988433223333333333333221 11223345677888889999999998777775543
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.94 E-value=5.5e-25 Score=192.12 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=150.1
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC-CCCcccceeechhHHHHHHHcCcChHHHHHHhcccc
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 93 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~-~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (270)
+....+||+||||||+|+++|+.|+++|++|+|||+.+.+... .+.....+.+.+++.++|+++ ++++.+.+.....
T Consensus 2 ~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~ 79 (392)
T PRK08773 2 SRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL--GVWPAVRAARAQP 79 (392)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC--CchhhhhHhhCCc
Confidence 3456689999999999999999999999999999998643211 111112367899999999999 8889887643222
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCc--cEEeCceEEEEEecCCeEEEEEcCCc
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE--IILNESNVIDFKDHGDKVSVVLENGQ 171 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~--~i~~~~~v~~i~~~~~~~~v~~~~g~ 171 (270)
..... +++. .+.....++... ....+.++.++|..|.+.|.+++... .++++++|++++.+++++.+++.+|+
T Consensus 80 ~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~ 154 (392)
T PRK08773 80 YRRMR-VWDA-GGGGELGFDADT---LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR 154 (392)
T ss_pred ccEEE-EEeC-CCCceEEechhc---cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC
Confidence 22221 2221 111122222111 01123357899999999998875321 38889999999998889999988888
Q ss_pred EEeccEEEecCCCCchhhccccCCC-CccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEE
Q 024233 172 CYAGDLLVGADGIWSKVRKNLFGPQ-EAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 248 (270)
Q Consensus 172 ~~~ad~vI~AdG~~S~vr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 248 (270)
+++||+||+|||.+|.+|+.+.... ...+.. .+...++... .+.......++.+++.+.++|+++++..|++..
T Consensus 155 ~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~ 229 (392)
T PRK08773 155 RLEAALAIAADGAASTLRELAGLPVSRHDYAQ-RGVVAFVDTE--HPHQATAWQRFLPTGPLALLPFADGRSSIVWTL 229 (392)
T ss_pred EEEeCEEEEecCCCchHHHhhcCCceEEEecc-EEEEEEEEcc--CCCCCEEEEEeCCCCcEEEEECCCCceEEEEEC
Confidence 9999999999999999999873221 122322 2222232221 112223334566788899999999987665554
No 18
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=5e-25 Score=192.15 Aligned_cols=216 Identities=19% Similarity=0.170 Sum_probs=148.0
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+..+||+||||||+|+++|+.|+++|++|+|||+.+... .. +++.+.+++.++|+++ ++++.+.........
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~----r~~~l~~~s~~~l~~l--gl~~~~~~~~~~~~~- 76 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DL----RTTALLGPSIRFLERL--GLWARLAPHAAPLQS- 76 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-Cc----chhhCcHHHHHHHHHh--CchhhhHhhcceeeE-
Confidence 456899999999999999999999999999999986432 11 2356788899999999 889888765433221
Q ss_pred ccccccCCCCcee----EeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcCC
Q 024233 97 INGLVDGISGSWY----IKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG 170 (270)
Q Consensus 97 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~g 170 (270)
+ .+.+. .+... ..+.. ......+.++.+++..+.+.|.+++.. .+.+++++|++++.+++++.+++++|
T Consensus 77 ~-~~~~~-~g~~~~~~~~~~~~---~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g 151 (388)
T PRK07494 77 M-RIVDA-TGRLIRAPEVRFRA---AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADG 151 (388)
T ss_pred E-EEEeC-CCCCCCCceEEEcH---HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCC
Confidence 1 12221 11110 11111 011123446889999999999988632 23588999999999999999999999
Q ss_pred cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEE
Q 024233 171 QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 247 (270)
Q Consensus 171 ~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 247 (270)
++++||+||+|||.+|.+|+.+.........++.++...+.. + .+.......++.+.++++++|+++++.++++.
T Consensus 152 ~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~-~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~ 226 (388)
T PRK07494 152 TTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTH-S-RPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWV 226 (388)
T ss_pred CEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEec-c-CCCCCEEEEEeCCCCcEEEEECCCCcEEEEEE
Confidence 899999999999999999998743322232334444433322 1 11222233455678889999999887655544
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.94 E-value=9e-25 Score=197.75 Aligned_cols=221 Identities=20% Similarity=0.264 Sum_probs=154.3
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+..+||+||||||+|+++|+.|+++|++|+||||.+..... ..++.+.++++++|+++ ++++.+.+.+.....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~- 80 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAVGIDDEALRVLQAI--GLADEVLPHTTPNHG- 80 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----CceeeeCHHHHHHHHHc--CChhHHHhhcccCCc-
Confidence 45689999999999999999999999999999999654322 23588999999999999 888888776543321
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEc--CC-
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE--NG- 170 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~--~g- 170 (270)
. .+.+ ..+.....++. ......+++....+++..+++.|.+.+.. ..++++++|++++.+++++++++. +|
T Consensus 81 ~-~~~~-~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 81 M-RFLD-AKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred e-EEEc-CCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 1 1222 23333444432 11223345545678999999999887532 249999999999999999988876 46
Q ss_pred -cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeec--CCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEE
Q 024233 171 -QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIAD--FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 247 (270)
Q Consensus 171 -~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 247 (270)
.+++||+||+|||.+|.+|+.+. ...........|. +++ ............+++++++.+.++|++++..+|.+.
T Consensus 158 ~~~i~ad~vVgADG~~S~vR~~lg-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~ 235 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVRRTLG-VPFEDLTFPERWL-VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFM 235 (538)
T ss_pred EEEEEEEEEEecCCCchhHHHHcC-CeeeCCCccceEE-EEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEE
Confidence 47999999999999999999883 2222111111222 111 111111222345677889999999999998888666
Q ss_pred Ee
Q 024233 248 NK 249 (270)
Q Consensus 248 ~~ 249 (270)
..
T Consensus 236 ~~ 237 (538)
T PRK06183 236 LL 237 (538)
T ss_pred eC
Confidence 54
No 20
>PRK06847 hypothetical protein; Provisional
Probab=99.94 E-value=1e-24 Score=189.39 Aligned_cols=219 Identities=29% Similarity=0.385 Sum_probs=159.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..||+||||||+|+++|+.|+++|++|+|+|+++.... .+.++.+.+++++.|+++ ++++.+.+.+..... .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~~~-~- 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITLQGNALRALREL--GVLDECLEAGFGFDG-V- 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc----CCceeeecHHHHHHHHHc--CCHHHHHHhCCCccc-e-
Confidence 46999999999999999999999999999999864322 234688999999999999 788888776543221 1
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcCCcEEecc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 176 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 176 (270)
.+.+ ..+.....++... ......+....++|..|.+.|.+.+.. ..++++++|++++.+++++.+.+.+|+++++|
T Consensus 76 ~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 153 (375)
T PRK06847 76 DLFD-PDGTLLAELPTPR-LAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYD 153 (375)
T ss_pred EEEC-CCCCEEEecCccc-ccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcC
Confidence 1222 2333333322111 011122334578999999999887532 13899999999998888899999999999999
Q ss_pred EEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeC
Q 024233 177 LLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 177 ~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
+||+|||.+|.+|+.+.+. ..+.+.+..+|.+..+.. .. .....+|++++..+.++|.+++.+++++....
T Consensus 154 ~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 225 (375)
T PRK06847 154 LVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRP-AE--VDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPR 225 (375)
T ss_pred EEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCC-CC--ccceEEEeCCCcEEEEEcCCCCeEEEEEeccC
Confidence 9999999999999988544 357778888877665432 12 22245777888899999999888776665443
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=8.7e-25 Score=191.58 Aligned_cols=218 Identities=21% Similarity=0.236 Sum_probs=150.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
.+||+||||||+|+++|+.|+++| ++|+||||.+..... ....++.+.++++++|+++ ++++.+...+......
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~--~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS--RDPRASAIAAAARRMLEAL--GVWDEIAPEAQPITDM 76 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC--CCcceEEecHHHHHHHHHC--CChhhhhhhcCcccEE
Confidence 379999999999999999999996 999999998642211 1224688999999999999 8888887665433221
Q ss_pred ccccccCCCCc----eeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcCC
Q 024233 97 INGLVDGISGS----WYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG 170 (270)
Q Consensus 97 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~g 170 (270)
. +.+..... ....+.. ....+.+.++.++|..+.+.|.+.+.. ..++++++|++++.+++++.+.+.+|
T Consensus 77 ~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g 151 (403)
T PRK07333 77 V--ITDSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDG 151 (403)
T ss_pred E--EEeCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCC
Confidence 1 22211111 1111111 111244556789999999999988532 13888999999999889999999999
Q ss_pred cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEE
Q 024233 171 QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 247 (270)
Q Consensus 171 ~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 247 (270)
++++||+||+|||.+|.+|+.+.........+..++........ ........++.++++++++|+++++++|.+.
T Consensus 152 ~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~ 226 (403)
T PRK07333 152 SVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER--PHGGRAEEHFLPAGPFAILPLKGNRSSLVWT 226 (403)
T ss_pred CEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC--CCCCEEEEEeCCCCceEEeECCCCCeEEEEE
Confidence 89999999999999999999874322222223333333332211 1122344566788889999999998766543
No 22
>PRK08244 hypothetical protein; Provisional
Probab=99.94 E-value=1.6e-24 Score=194.48 Aligned_cols=212 Identities=19% Similarity=0.273 Sum_probs=146.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
++||+||||||+||++|+.|+++|++|+||||.+.+... +.++.++++++++|+++ |+++++.+.+.......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~~~- 74 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKALTLHPRTLEILDMR--GLLERFLEKGRKLPSGH- 74 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----cceeEecHHHHHHHHhc--CcHHHHHhhcccccceE-
Confidence 479999999999999999999999999999999654322 23688999999999999 88898887654332111
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEc--CC-cE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE--NG-QC 172 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~--~g-~~ 172 (270)
+.. .... ..+.. .....++.+.++|..+.+.|.+.+ +.. +++++++++++.+++++++++. +| ++
T Consensus 75 -~~~-~~~~--~~~~~----~~~~~~~~~~i~q~~le~~L~~~~~~~gv~-v~~~~~v~~i~~~~~~v~v~~~~~~g~~~ 145 (493)
T PRK08244 75 -FAG-LDTR--LDFSA----LDTSSNYTLFLPQAETEKVLEEHARSLGVE-IFRGAEVLAVRQDGDGVEVVVRGPDGLRT 145 (493)
T ss_pred -Eec-cccc--CCccc----CCCCCCcEEEecHHHHHHHHHHHHHHcCCe-EEeCCEEEEEEEcCCeEEEEEEeCCccEE
Confidence 111 0100 11110 112234457899999999998765 334 8999999999998888877764 45 47
Q ss_pred EeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEE
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 248 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 248 (270)
++||+||+|||.+|.+|+.+..........+..+.+.+... .+.......+++++++++++|+++++.+|++..
T Consensus 146 i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~ 219 (493)
T PRK08244 146 LTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLK--DPPPSSVLSLCTREGGVMIVPLSGGIYRVLIID 219 (493)
T ss_pred EEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEec--CCCCcceeEEEeCCceEEEEECCCCeEEEEEEc
Confidence 99999999999999999988321111111222333322211 111223445678889999999999987776543
No 23
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.94 E-value=1.7e-24 Score=188.52 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=139.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccc-cCCCC-cccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQ-YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~-~~~g~-~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
.+||+||||||+|+++|+.|+++|++|+|||+.+... ...+. ..+.+.+.|+++++|+++ |+++.+.+........
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL--GAWSSIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC--CCchhhhHhhCCccce
Confidence 4799999999999999999999999999999875321 11111 112357999999999999 8888887643222222
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcC---CccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
+. .++.... ...+.... . .....++.+.+..|...|.+++. ...++++++|++++.+++++++++.+|.++
T Consensus 81 ~~-~~~~~~~--~~~~~~~~--~-~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (384)
T PRK08849 81 LE-TWEHPEC--RTRFHSDE--L-NLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEI 154 (384)
T ss_pred EE-EEeCCCc--eEEecccc--c-CCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEE
Confidence 21 1111111 11121100 0 01122577888889999887752 224888999999999999999999999999
Q ss_pred eccEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeE
Q 024233 174 AGDLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKM 242 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 242 (270)
+||+||+|||.+|.+|+.+... ....|.+......+ ... .+.......++.+.+...++|++++..
T Consensus 155 ~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~-~~~--~~~~~~~~~~~~~~g~~~~~pl~~~~~ 221 (384)
T PRK08849 155 EAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINV-ETE--QPQQDITWQQFTPSGPRSFLPLCGNQG 221 (384)
T ss_pred EeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEE-EcC--CCCCCEEEEEeCCCCCEEEeEcCCCce
Confidence 9999999999999999988422 22333333222222 111 111222334455666667789987753
No 24
>PRK07045 putative monooxygenase; Reviewed
Probab=99.94 E-value=2.8e-24 Score=187.48 Aligned_cols=219 Identities=19% Similarity=0.276 Sum_probs=147.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
.++||+||||||+|+++|+.|+++|++|+|+|+.+......+ +..+.|++.++|+++ |+++.+.+........+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNG----ADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDAM 77 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCc----ccccCccHHHHHHHc--CCHHHHHhcccccccce
Confidence 457999999999999999999999999999999975432222 355999999999999 88888886553322222
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCe--EEEEEcCCcE
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDK--VSVVLENGQC 172 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~--~~v~~~~g~~ 172 (270)
. +. ..++.....+... ....+ ....++|..|.+.|.+.+.. ..++++++|++++.++++ +.+++.+|++
T Consensus 78 ~-~~--~~g~~~~~~~~~~-~~~~g--~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~ 151 (388)
T PRK07045 78 R-LY--HDKELIASLDYRS-ASALG--YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGER 151 (388)
T ss_pred E-Ee--cCCcEEEEecCCc-cccCC--ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCE
Confidence 1 11 2333333333211 11112 12468899999999987532 249999999999987665 3688889999
Q ss_pred EeccEEEecCCCCchhhccccCCC--CccccceEeEeeeecCCCcccccCceEEEeeC-CceEEEEeCCCCeEEEEEEEe
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQ--EAIFSGYTCYTGIADFVPADIESVGYRVFLGH-KQYFVSSDVGAGKMQWYAFNK 249 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~~~~~~~ 249 (270)
+++|+||+|||.+|.+|+++++.. .+.+.+... .+.....+.. . ....+++++ +++++++|++++..+|++..+
T Consensus 152 ~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 152 VAPTVLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSV-R-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred EECCEEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCc-c-ccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 999999999999999999864332 233433333 3343322211 1 122344443 566778999988877776654
Q ss_pred CC
Q 024233 250 EP 251 (270)
Q Consensus 250 ~~ 251 (270)
.+
T Consensus 229 ~~ 230 (388)
T PRK07045 229 AD 230 (388)
T ss_pred cc
Confidence 43
No 25
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.94 E-value=1.4e-24 Score=186.74 Aligned_cols=223 Identities=25% Similarity=0.275 Sum_probs=139.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+||||||+|+++|+.|+++|++|+||||++...... .++.+.++++++|+++ ++++.+.+...........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~----~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~~ 75 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG----RGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRIF 75 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS----SSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc----cccccccccccccccc--cchhhhhhhcccccceeeE
Confidence 799999999999999999999999999999987654333 2688999999999999 8899988877432211111
Q ss_pred cccCCCCc--eeEeecCCc-ccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCC---
Q 024233 100 LVDGISGS--WYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG--- 170 (270)
Q Consensus 100 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g--- 170 (270)
+.....+. +........ .......+....++|..|++.|.+.+ +. .+++++++++++.+++++.+.+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-~i~~~~~v~~~~~d~~~~~~~~~~~~~g 154 (356)
T PF01494_consen 76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-DIRFGTRVVSIEQDDDGVTVVVRDGEDG 154 (356)
T ss_dssp EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-EEEESEEEEEEEEETTEEEEEEEETCTC
T ss_pred eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-hheeeeecccccccccccccccccccCC
Confidence 11110111 000000000 00122334457899999999999985 43 4999999999999998877665433
Q ss_pred --cEEeccEEEecCCCCchhhccccCCCCcccc--ceEeEeeeecCCC-cccccCceEEEeeCCceEEEEeCCCC-eEEE
Q 024233 171 --QCYAGDLLVGADGIWSKVRKNLFGPQEAIFS--GYTCYTGIADFVP-ADIESVGYRVFLGHKQYFVSSDVGAG-KMQW 244 (270)
Q Consensus 171 --~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~~ 244 (270)
++++||+||+|||.+|.+|+.+... .+... ....+..+....+ ..+......+...+...++++|+.++ ...+
T Consensus 155 ~~~~i~adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 233 (356)
T PF01494_consen 155 EEETIEADLVVGADGAHSKVRKQLGID-RPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRF 233 (356)
T ss_dssp EEEEEEESEEEE-SGTT-HHHHHTTGG-EEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred ceeEEEEeeeecccCcccchhhhcccc-ccCccccccccccccccccccccccccccccccccccceeEeeccCCccceE
Confidence 2799999999999999999998433 22121 1122222221111 11111223334446666788999983 3444
Q ss_pred EEEEeC
Q 024233 245 YAFNKE 250 (270)
Q Consensus 245 ~~~~~~ 250 (270)
++....
T Consensus 234 ~~~~~~ 239 (356)
T PF01494_consen 234 VWFLPF 239 (356)
T ss_dssp EEEEET
T ss_pred EEeeec
Confidence 444433
No 26
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.93 E-value=1.6e-24 Score=188.71 Aligned_cols=217 Identities=19% Similarity=0.158 Sum_probs=148.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
||+||||||+|+++|+.|+++| ++|+|+||.+.+....+....++.++|++.++|+++ ++++.+...+.... .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~-~~~- 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL--GLWPKLAPFATPIL-DIH- 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC--CChhhhHhhcCccc-eEE-
Confidence 7999999999999999999999 999999998765433222223578999999999999 78888876554322 111
Q ss_pred cccCCCCceeEeecCCcccccCC-CCeEEEEeHHHHHHHHHHhcCC--c-cEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--E-IILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~--~-~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
+.... ......+.. ...+ .+.++.++|..|.+.|.+.+.. . .++++++|++++.+++++++++.+|++++|
T Consensus 77 ~~~~~-~~~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a 151 (382)
T TIGR01984 77 VSDQG-HFGATHLRA----SEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRA 151 (382)
T ss_pred EEcCC-CCceEEech----hhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEe
Confidence 11110 011111110 1111 1235789999999999998643 2 388899999999888899999988989999
Q ss_pred cEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCC-eEEEEEEE
Q 024233 176 DLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFN 248 (270)
Q Consensus 176 d~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~~~~~~ 248 (270)
|+||+|||.+|.+|+.+.........++.++...+.... +.......++.+++.++++|++++ .+++++..
T Consensus 152 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 152 KLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ--PHQGCAFERFTPHGPLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred eEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC--CCCCEEEEeeCCCCCeEECcCCCCCCEEEEEEC
Confidence 999999999999999885333333444555555443211 111222334566777889999998 55554443
No 27
>PRK06184 hypothetical protein; Provisional
Probab=99.93 E-value=2.5e-24 Score=193.51 Aligned_cols=213 Identities=18% Similarity=0.274 Sum_probs=141.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
..+||+||||||+||++|+.|+++|++|+||||.+.+.... .+..++++++++|+++ ++++++.+.+.......
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~----ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~~~ 75 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGS----RGKGIQPRTQEVFDDL--GVLDRVVAAGGLYPPMR 75 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCc----cceeecHHHHHHHHHc--CcHHHHHhcCcccccee
Confidence 35899999999999999999999999999999986543222 2577899999999999 88899887664332211
Q ss_pred cccccCCCCceeEeecCCc---ccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEE---cC
Q 024233 98 NGLVDGISGSWYIKFDTFT---PAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL---EN 169 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~---~~ 169 (270)
++. ..+. ........ ......++....++|..+++.|.+.+.. ..++++++|++++.+++++++++ .+
T Consensus 76 --~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~ 151 (502)
T PRK06184 76 --IYR-DDGS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG 151 (502)
T ss_pred --EEe-CCce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC
Confidence 111 1111 11111110 0011123445688999999999887532 24899999999999888888877 56
Q ss_pred CcEEeccEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCC-ceEEEEeCCCCeE
Q 024233 170 GQCYAGDLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGKM 242 (270)
Q Consensus 170 g~~~~ad~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~~ 242 (270)
+++++||+||+|||.+|.+|+.+... ....+.....+...... + ........+|+.+. +.+.++|+++++.
T Consensus 152 ~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 224 (502)
T PRK06184 152 EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSL-T-GLDRDAWHQWPDGDMGMIALCPLPGTDL 224 (502)
T ss_pred eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEe-e-cCCCcceEEccCCCCcEEEEEEccCCCe
Confidence 67899999999999999999988421 11222110112222211 1 11222344555544 7888899987754
No 28
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.93 E-value=1e-24 Score=182.10 Aligned_cols=217 Identities=34% Similarity=0.480 Sum_probs=157.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.+|+|||||++||++|+.|+|.|++|+|+|+...+ +..| .++.+..++.++|+.+ ++.+++.+.+.+....+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~-R~~g---~si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v-- 74 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP-RGEG---TSINLALNGWRALKAI--GLKEQIREQGIPLGGRV-- 74 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc-ccCC---cceeehhhHHHHHHHc--ccHHHHHHhcCccccee--
Confidence 58999999999999999999999999999997444 3333 4788888999999999 78899998887765543
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCc------eEEEEEecCCeEEEEEcCCcEE
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
.....+++...++....... .....+.|..++++|.++++...++++. ....++.......+++.+|.++
T Consensus 75 ~~~~~sg~~~~~~~~~~~~~----~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~ 150 (420)
T KOG2614|consen 75 LIHGDSGKEVSRILYGEPDE----YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTV 150 (420)
T ss_pred eeecCCCCeeEecccCCchH----HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEE
Confidence 23445666555554332211 1113456777788888888766677775 5555666666778899999999
Q ss_pred eccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeCC
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 251 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 251 (270)
++|++|+|||++|.||+.+... .|.++++.+|++.. +.|..... ...++...+..+..-|.+.....+++....+
T Consensus 151 ~~dlligCDGa~S~Vr~~l~~~-~p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~ 225 (420)
T KOG2614|consen 151 KGDLLIGCDGAYSKVRKWLGFK-EPRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKS 225 (420)
T ss_pred EeeEEEEcCchHHHHHHHhccc-CCcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCC
Confidence 9999999999999999999543 49999999999987 33433222 2334444555566667777776665555433
No 29
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.93 E-value=3.9e-24 Score=186.34 Aligned_cols=218 Identities=21% Similarity=0.227 Sum_probs=149.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC-CCCcccceeechhHHHHHHHcCcChHHHHHH-hccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMR-AGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~-~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~ 98 (270)
||+||||||+|+++|+.|+++|++|+||||.+.+... .+..++++.+++++.+.|+++ ++++++.+ ...... .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~-~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL--GVWDKIEPDRAQPIR-DIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC--CchhhhhhhcCCCce-EEE
Confidence 7999999999999999999999999999999764322 112234688999999999999 88888876 443222 221
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
++.. .+.....++... ......++.++|..+.+.|.+.+.. ..++++++|+++..+++++.+.+++|+++++
T Consensus 78 -~~~~-~~~~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 152 (385)
T TIGR01988 78 -VSDG-GSFGALHFDADE---IGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA 152 (385)
T ss_pred -EEeC-CCCceEEechhh---cCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence 2221 111112222110 0112235789999999999998632 2489999999999988899999999999999
Q ss_pred cEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEe
Q 024233 176 DLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 249 (270)
Q Consensus 176 d~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 249 (270)
|+||+|||.+|.+|+.+... ..+.+. ..++........ +.......++.+++.++++|++++++++.+...
T Consensus 153 ~~vi~adG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~ 224 (385)
T TIGR01988 153 RLLVGADGANSKVRQLAGIPTTGWDYG-QSAVVANVKHER--PHQGTAWERFTPTGPLALLPLPDNRSSLVWTLP 224 (385)
T ss_pred eEEEEeCCCCCHHHHHcCCCccccccC-CeEEEEEEEecC--CCCCEEEEEecCCCCEEEeECCCCCeEEEEECC
Confidence 99999999999999988422 222332 233333332211 112222345567788889999999877666543
No 30
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=2.9e-24 Score=188.38 Aligned_cols=211 Identities=17% Similarity=0.197 Sum_probs=141.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcccc----CCCCcccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR----GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~----~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
.+||+||||||+|+++|+.|+++|++|+|||+.+.... .......++.+.+++.++|+++ ++++.+.+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL--GAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC--ChhhhhhHhhCccc
Confidence 47999999999999999999999999999999863110 0001112356899999999999 88888876432221
Q ss_pred ccccccccCCCCceeEeecCCcccccCC-CCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcCCc
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 171 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~g~ 171 (270)
..+. +++. .+.....+... ..+ ...++.+++..+.+.|.+.+.. ..+++++++++++.+++++.+++.+|+
T Consensus 80 ~~~~-~~~~-~~~~~~~~~~~----~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 153 (405)
T PRK05714 80 SEMQ-VWDG-SGTGQIHFSAA----SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR 153 (405)
T ss_pred eeEE-EEcC-CCCceEEeccc----ccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence 2221 2222 22222233211 111 1235789999999999887532 138889999999999899999999998
Q ss_pred EEeccEEEecCCCCchhhccccCCCC-ccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCC
Q 024233 172 CYAGDLLVGADGIWSKVRKNLFGPQE-AIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG 240 (270)
Q Consensus 172 ~~~ad~vI~AdG~~S~vr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 240 (270)
+++||+||+|||.+|.+|+.+..... ..|.....+. .... ..+.......++.++++++++|++++
T Consensus 154 ~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~g~~~~~P~~~~ 220 (405)
T PRK05714 154 QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRC--SEPHRATAWQRFTDDGPLAFLPLERD 220 (405)
T ss_pred EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEc--CCCCCCEEEEEcCCCCCeEEeeCCCC
Confidence 99999999999999999998843221 1222222222 2211 12222233345678889999999754
No 31
>PLN02985 squalene monooxygenase
Probab=99.93 E-value=1.1e-23 Score=188.50 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=145.7
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
.+..+||+|||||++|+++|+.|+++|++|+|+||.+..... ..++.++|++.++|+++ |+++.+.........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~----~~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~~ 113 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER----MMGEFMQPGGRFMLSKL--GLEDCLEGIDAQKAT 113 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc----ccccccCchHHHHHHHc--CCcchhhhccCcccc
Confidence 445689999999999999999999999999999998542211 12477999999999999 788887765433222
Q ss_pred cccccccCCCCce-eEeecCCcccccC-CCCeEEEEeHHHHHHHHHHhcCC--c-cEEeCceEEEEEecCCe---EEEEE
Q 024233 96 RINGLVDGISGSW-YIKFDTFTPAAEK-GLPVTRVISRMTLQQILAKAVGD--E-IILNESNVIDFKDHGDK---VSVVL 167 (270)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~--~-~i~~~~~v~~i~~~~~~---~~v~~ 167 (270)
.+. +. ..++. ...++.. .... ..+.+..++|..|.+.|++++.. . .++. .+++++..+++. +++..
T Consensus 114 ~~~-v~--~~g~~~~~~~~~~--~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~~~v~gV~~~~ 187 (514)
T PLN02985 114 GMA-VY--KDGKEAVAPFPVD--NNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEKGVIKGVTYKN 187 (514)
T ss_pred cEE-EE--ECCEEEEEeCCCC--CcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcCCEEEEEEEEc
Confidence 222 11 12322 2222211 1111 12345789999999999988632 2 2554 467777665553 34444
Q ss_pred cCCc--EEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEE
Q 024233 168 ENGQ--CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 245 (270)
Q Consensus 168 ~~g~--~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 245 (270)
.+|+ ++.||+||+|||.+|.+|+++.....+.++....+. .. ....+.....+++++++++++++|++++++++.
T Consensus 188 ~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~ 264 (514)
T PLN02985 188 SAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-SK--NCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCV 264 (514)
T ss_pred CCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-Ec--cccCCCCCcceEEcCCCceEEEEEeCCCeEEEE
Confidence 5665 367999999999999999999644333343333332 11 111223344577888899999999999987776
Q ss_pred EEEeCC
Q 024233 246 AFNKEP 251 (270)
Q Consensus 246 ~~~~~~ 251 (270)
+....+
T Consensus 265 ~~~~~~ 270 (514)
T PLN02985 265 FEVLPD 270 (514)
T ss_pred EEEeCC
Confidence 666543
No 32
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=7.4e-24 Score=185.23 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=147.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC---CCcEEEEeccCcc-ccCCCCcccceeechhHHHHHHHcCcChHHHHHHhcccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 93 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~---g~~V~viE~~~~~-~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (270)
+.+||+||||||+|+++|+.|+++ |++|+||||.... ....+....++.+.++++++|+++ ++++.+...+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~ 79 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL--GVWQALADCATPI 79 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC--CChhhhHhhcCCc
Confidence 568999999999999999999998 9999999996322 112222234678999999999999 8889887765432
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCC-eEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcC
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLEN 169 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~ 169 (270)
.. +. +.+. .......+.. ...+.+ .++.++|..+.+.|.+.+.. ..++++++|+++..+++++.+++.+
T Consensus 80 ~~-~~-~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~ 152 (395)
T PRK05732 80 TH-IH-VSDR-GHAGFVRLDA----EDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDD 152 (395)
T ss_pred cE-EE-EecC-CCCceEEeeh----hhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECC
Confidence 21 11 1110 1111111110 111222 24788999999998887532 2488899999999888899999988
Q ss_pred CcEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEE
Q 024233 170 GQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 248 (270)
Q Consensus 170 g~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 248 (270)
+.++++|+||+|||.+|.+|+.+.........+..++...+.... .........+.+++.+.++|+++|++.+++..
T Consensus 153 g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~ 229 (395)
T PRK05732 153 GETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE--AHQGRAFERFTEHGPLALLPMSDGRCSLVWCH 229 (395)
T ss_pred CCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC--CCCCEEEEeecCCCCEEEeECCCCCeEEEEEC
Confidence 888999999999999999999874333333334455554433211 11111122345667788899999987665554
No 33
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.93 E-value=1.6e-23 Score=191.79 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=141.5
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
+..+||+||||||+||++|+.|++. |++|+|||+.+.+. ..| .+..++|+++++|+++ |+++.+.+.+.....
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-~~g---rA~gl~prtleiL~~l--Gl~d~l~~~g~~~~~ 103 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-ELG---QADGIACRTMEMFQAF--GFAERILKEAYWINE 103 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCC---eeeEEChHHHHHHHhc--cchHHHHhhcccccc
Confidence 4578999999999999999999995 99999999986532 223 3578999999999999 899999876653322
Q ss_pred cccccccCCC--CceeEeecCCc--ccccCCCCeEEEEeHHHHHHHHHHhcC---Cc-cEEeCceEEEEEecC---CeEE
Q 024233 96 RINGLVDGIS--GSWYIKFDTFT--PAAEKGLPVTRVISRMTLQQILAKAVG---DE-IILNESNVIDFKDHG---DKVS 164 (270)
Q Consensus 96 ~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~~~~l~~~L~~~~~---~~-~i~~~~~v~~i~~~~---~~~~ 164 (270)
.. ++.... ...+.+..... ......++. ..++|..+.+.|.+.+. .. .+++++++++++.++ ..|+
T Consensus 104 ~~--~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~ 180 (634)
T PRK08294 104 TA--FWKPDPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT 180 (634)
T ss_pred eE--EEcCCCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE
Confidence 11 221111 01111111100 001112344 67899999999988752 22 378899999998764 3477
Q ss_pred EEEc------CC--cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCC-cc-cccC-ceEEEeeCCceEE
Q 024233 165 VVLE------NG--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP-AD-IESV-GYRVFLGHKQYFV 233 (270)
Q Consensus 165 v~~~------~g--~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~ 233 (270)
+++. +| ++++||+||+|||++|.||+++........... .+++.+... .+ ++.. ...++.++++.++
T Consensus 181 v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~--~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~ 258 (634)
T PRK08294 181 VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANH--AWGVMDVLAVTDFPDIRLKCAIQSASEGSIL 258 (634)
T ss_pred EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccc--eEEEEEEEEccCCCCcceEEEEecCCCceEE
Confidence 7775 34 589999999999999999999832211111111 112222111 11 1111 1223335778999
Q ss_pred EEeCCCCe-EEEEEEE
Q 024233 234 SSDVGAGK-MQWYAFN 248 (270)
Q Consensus 234 ~~p~~~g~-~~~~~~~ 248 (270)
++|+++|. +++++..
T Consensus 259 ~~P~~~g~~~r~~~~~ 274 (634)
T PRK08294 259 LIPREGGYLVRLYVDL 274 (634)
T ss_pred EEECCCCeEEEEEEec
Confidence 99999996 5555543
No 34
>PRK06185 hypothetical protein; Provisional
Probab=99.93 E-value=4.6e-24 Score=187.24 Aligned_cols=219 Identities=18% Similarity=0.179 Sum_probs=143.6
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
...+.+||+|||||++|+++|+.|+++|++|+|||+.+..... ..+..+.+.+.++|+++ ++++.+.+......
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~----~r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~ 75 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD----FRGDTVHPSTLELMDEL--GLLERFLELPHQKV 75 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcc----ccCceeChhHHHHHHHc--CChhHHhhccccee
Confidence 3446789999999999999999999999999999998643221 12467899999999999 78888766433222
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeE---EEEEc
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKV---SVVLE 168 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~---~v~~~ 168 (270)
..+. ++. .+......+... .....+.++.+.+..+.+.|.+.+.. ..++++++|+++..+++.+ .+...
T Consensus 76 ~~~~-~~~--~~~~~~~~~~~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~ 150 (407)
T PRK06185 76 RTLR-FEI--GGRTVTLADFSR--LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTP 150 (407)
T ss_pred eeEE-EEE--CCeEEEecchhh--cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcC
Confidence 2221 221 121111111111 11223556789999999999887532 2488899999999887765 33444
Q ss_pred CCc-EEeccEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEE
Q 024233 169 NGQ-CYAGDLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 246 (270)
Q Consensus 169 ~g~-~~~ad~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 246 (270)
+|+ +++||+||+|||.+|.+|+.+... ....+.+...+... +. +. ........++.++++++++|++ ++..+.+
T Consensus 151 ~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~g~~~llP~~-~~~~i~~ 226 (407)
T PRK06185 151 DGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRL-PR-EP-DDPESLMGRFGPGQGLIMIDRG-DYWQCGY 226 (407)
T ss_pred CCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEec-CC-CC-CCCcccceEecCCcEEEEEcCC-CeEEEEE
Confidence 664 799999999999999999987422 22233333333222 21 11 1111234467889999999997 6654444
Q ss_pred EE
Q 024233 247 FN 248 (270)
Q Consensus 247 ~~ 248 (270)
..
T Consensus 227 ~~ 228 (407)
T PRK06185 227 VI 228 (407)
T ss_pred Ee
Confidence 44
No 35
>PTZ00367 squalene epoxidase; Provisional
Probab=99.93 E-value=1.1e-23 Score=189.51 Aligned_cols=217 Identities=21% Similarity=0.208 Sum_probs=144.4
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc--cccCCCCcccceeechhHHHHHHHcCcChHHHHHHhcccc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS--AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 93 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~--~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (270)
.+..+||+||||||+|+++|+.|+++|++|+|+||.+. +.+.. +..++|++.++|+++ |+++.+.......
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~-----G~~L~p~g~~~L~~L--GL~d~l~~i~~~~ 102 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIV-----GELLQPGGVNALKEL--GMEECAEGIGMPC 102 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhh-----hhhcCHHHHHHHHHC--CChhhHhhcCcce
Confidence 34568999999999999999999999999999999852 11112 356999999999999 8888887655432
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc----CCc-cEEeCceEEEEEecCC-------
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDE-IILNESNVIDFKDHGD------- 161 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~----~~~-~i~~~~~v~~i~~~~~------- 161 (270)
. ... +.+ .++... ..+. ..+ ..+..+++..+.+.|++.+ ... .++ ..+|+++..+++
T Consensus 103 ~-~~~-v~~-~~G~~~-~i~~-----~~~-~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~ 171 (567)
T PTZ00367 103 F-GYV-VFD-HKGKQV-KLPY-----GAG-ASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAY 171 (567)
T ss_pred e-eeE-EEE-CCCCEE-EecC-----CCC-CceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeE
Confidence 2 121 222 122211 1111 111 1246778999999988875 122 244 457888765443
Q ss_pred eEEEEEcC-----------------------CcEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccc
Q 024233 162 KVSVVLEN-----------------------GQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIE 218 (270)
Q Consensus 162 ~~~v~~~~-----------------------g~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (270)
+++++..+ +++++||+||+|||.+|.+|+++... .+.+.....+.+........+.
T Consensus 172 gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~-~~~~~~~s~~~g~~~~~~~lp~ 250 (567)
T PTZ00367 172 GVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHY-TPASENHSHFVGLVLKNVRLPK 250 (567)
T ss_pred EEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCC-CCCcCcceEEEEEEEecccCCC
Confidence 35555444 56899999999999999999999533 2334444555453221111222
Q ss_pred cCceEEEeeCCceEEEEeCCCCeEEEEEEEeCC
Q 024233 219 SVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 251 (270)
Q Consensus 219 ~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 251 (270)
.....+|++++++++++|++++++++++.+..+
T Consensus 251 ~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~ 283 (567)
T PTZ00367 251 EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKP 283 (567)
T ss_pred CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCC
Confidence 334567889999999999999988777666544
No 36
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.93 E-value=1.1e-23 Score=183.69 Aligned_cols=218 Identities=18% Similarity=0.201 Sum_probs=146.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcccc-CCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~-~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+.+||+||||||+|+++|+.|++.|++|+|+||.+.... ..+.....+.+.++++++|+++ ++++++..........
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL--GVWQALDAARLAPVYD 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc--CchhhhhhhcCCcceE
Confidence 457999999999999999999999999999999865432 1222233477999999999999 7888775433211111
Q ss_pred ccccccCCCCceeEeecCCcccccCCCC-eEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEcCCcE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQC 172 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~~g~~ 172 (270)
+. +.....+. ..+.. .....| ..+.+++..+.+.|.+++.. ..++ +++|+++..+++++.+++.+|.+
T Consensus 82 ~~-~~~~~~~~--~~~~~----~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~ 153 (388)
T PRK07608 82 MR-VFGDAHAR--LHFSA----YQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQV 153 (388)
T ss_pred EE-EEECCCce--eEeec----cccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCE
Confidence 11 11111111 11111 111122 24678999999999887632 2255 89999999888889999988888
Q ss_pred EeccEEEecCCCCchhhccccCCCCc-cccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEE
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQEA-IFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFN 248 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 248 (270)
++||+||+|||.+|.+|+.+...... .+.. .++...++. + .........|+.++++++++|++++++.+++..
T Consensus 154 ~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 227 (388)
T PRK07608 154 LRADLVVGADGAHSWVRSQAGIKAERRPYRQ-TGVVANFKA-E-RPHRGTAYQWFRDDGILALLPLPDGHVSMVWSA 227 (388)
T ss_pred EEeeEEEEeCCCCchHHHhcCCCccccccCC-EEEEEEEEe-c-CCCCCEEEEEecCCCCEEEeECCCCCeEEEEEC
Confidence 99999999999999999988433222 2222 222222221 1 122223456778889999999999987665443
No 37
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.92 E-value=2.3e-23 Score=181.87 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=143.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCC--cccceeechhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~--~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
..+||+||||||+|+++|+.|+++|++|+|||+.+......+. ......+.+++.++|+++ ++++.+.+.......
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL--GVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc--CChhhhhhhhCcccc
Confidence 4589999999999999999999999999999998542211111 112357899999999999 888888764322111
Q ss_pred cccccccCCCCceeEeecCCcccccCC-CCeEEEEeHHHHHHHHHHhcCC--c-cEEeCceEEEEEecCCeEEEEEcCCc
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--E-IILNESNVIDFKDHGDKVSVVLENGQ 171 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~--~-~i~~~~~v~~i~~~~~~~~v~~~~g~ 171 (270)
.+. .+...... ..++.. ... ...++.++|..+.+.|.+++.. . .++++++|+++..+++++.+.+.+|+
T Consensus 82 ~~~-~~~~~~~~--~~~~~~----~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 154 (391)
T PRK08020 82 RLE-TWEWETAH--VVFDAA----ELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE 154 (391)
T ss_pred eEE-EEeCCCCe--EEeccc----ccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC
Confidence 111 11111221 112111 111 1235789999999999887522 2 37889999999988888889998898
Q ss_pred EEeccEEEecCCCCchhhcccc-CCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEE
Q 024233 172 CYAGDLLVGADGIWSKVRKNLF-GPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 245 (270)
Q Consensus 172 ~~~ad~vI~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 245 (270)
+++||+||+|||.+|.+|+.+. +...+.|.+...+. .+.. +. ........++.+++...++|+.++...++
T Consensus 155 ~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~-~~~~-~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~v 226 (391)
T PRK08020 155 EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLI-SVKC-EN-PPGDSTWQQFTPSGPRAFLPLFDNWASLV 226 (391)
T ss_pred EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEE-EEEe-cC-CCCCEEEEEEcCCCCEEEeECCCCcEEEE
Confidence 9999999999999999999884 33344555433333 3222 11 11222233455566677889988764443
No 38
>PRK07190 hypothetical protein; Provisional
Probab=99.92 E-value=1.4e-22 Score=180.60 Aligned_cols=217 Identities=16% Similarity=0.215 Sum_probs=142.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
..+||+||||||+||++|+.|+++|++|+||||.+.+.. . +.+..++++++++|+.+ ++++.+...+......
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~-~---gra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~~~- 76 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE-V---GRADALNARTLQLLELV--DLFDELYPLGKPCNTS- 76 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc-c---ccceEeCHHHHHHHHhc--ChHHHHHhhCccceeE-
Confidence 457999999999999999999999999999999975432 2 23577999999999999 8898887765432211
Q ss_pred cccccCCCCceeEeecC-CcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 98 NGLVDGISGSWYIKFDT-FTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
..+. .+..+..... .........+....+.+..+++.|.+.+ +.. ++++++|++++.+++++.+.+.+|+++
T Consensus 77 -~~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~-v~~~~~v~~l~~~~~~v~v~~~~g~~v 152 (487)
T PRK07190 77 -SVWA--NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA-VKRNTSVVNIELNQAGCLTTLSNGERI 152 (487)
T ss_pred -EEec--CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE-EEeCCEEEEEEEcCCeeEEEECCCcEE
Confidence 1111 1221111110 0000111223346788999999998764 344 899999999999999988888888899
Q ss_pred eccEEEecCCCCchhhccccCCCCccccc-e-EeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEE
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSG-Y-TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 247 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 247 (270)
+|++||+|||.+|.+|+.+.-.-...... . ...-...+... +.......+..+.+.++.+|++++..++++.
T Consensus 153 ~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~ 226 (487)
T PRK07190 153 QSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDF--PKVPEIIVFQAETSDVAWIPREGEIDRFYVR 226 (487)
T ss_pred EeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCC--CCCcceEEEEcCCCCEEEEECCCCEEEEEEE
Confidence 99999999999999999883221111111 1 11112222110 1111122344567778889998886655443
No 39
>PRK06996 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-22 Score=177.41 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=142.1
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCC----CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhcc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKG----FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 91 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g----~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 91 (270)
.++.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+.. . ....++.+++.++.+|+++ ++|+.. ..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-~-~~~r~~~l~~~~~~~L~~l--g~~~~~---~~ 80 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS-A-NDPRAIALSHGSRVLLETL--GAWPAD---AT 80 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC-C-CCceEEEecHHHHHHHHhC--CCchhc---CC
Confidence 345689999999999999999999987 46999999854321 1 1223678999999999999 677652 11
Q ss_pred ccCcccccccc-CCCCceeEeecCCcccccCCCC-eEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEE
Q 024233 92 VTGDRINGLVD-GISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL 167 (270)
Q Consensus 92 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~ 167 (270)
.. ..+. +.+ ...+....... ..+.+ .++.++|..|++.|.+.+.. ..++.++++++++.+++++++++
T Consensus 81 ~~-~~~~-~~~~~~~g~~~~~~~------~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~ 152 (398)
T PRK06996 81 PI-EHIH-VSQRGHFGRTLIDRD------DHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLAL 152 (398)
T ss_pred cc-cEEE-EecCCCCceEEeccc------ccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEE
Confidence 11 1111 111 11122222111 11222 36899999999999998632 24888999999999999999988
Q ss_pred cCC---cEEeccEEEecCCC-CchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCe
Q 024233 168 ENG---QCYAGDLLVGADGI-WSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 241 (270)
Q Consensus 168 ~~g---~~~~ad~vI~AdG~-~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 241 (270)
.++ ++++||+||+|||. +|.+|+.+.....+.+.++.++.+.+... . +........+.+.+++.++|++++.
T Consensus 153 ~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~~~~~~~~~~~G~~~~lp~~~~~ 228 (398)
T PRK06996 153 GTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVS-A-PRPGWAWERFTHEGPLALLPLGGPR 228 (398)
T ss_pred CCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEcc-C-CCCCEEEEEecCCCCeEEeECCCCC
Confidence 755 58999999999996 68888877554445555666666655421 1 1122223345678889999998764
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.91 E-value=2.1e-22 Score=182.80 Aligned_cols=172 Identities=23% Similarity=0.355 Sum_probs=122.1
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
.+..+||+||||||+||++|+.|+++|++|+||||.+.... ..+++.+.++++++|+++ |+++++.+.+.....
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~----~~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~ 77 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF----NPKANTTSARSMEHFRRL--GIADEVRSAGLPVDY 77 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC----CCccccCCHHHHHHHHhc--ChHHHHHhhcCCccc
Confidence 35568999999999999999999999999999999864322 223577999999999999 899999887643211
Q ss_pred ccc-ccccCCCCceeEeecCCcccc----------cCCCC-eEEEEeHHHHHHHHHHhcC---CccEEeCceEEEEEecC
Q 024233 96 RIN-GLVDGISGSWYIKFDTFTPAA----------EKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHG 160 (270)
Q Consensus 96 ~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~i~~~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~ 160 (270)
... .+.....+..+..+....... ....+ ..+.++|..|.+.|.+.+. ...++++++|+++..++
T Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~ 157 (545)
T PRK06126 78 PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA 157 (545)
T ss_pred cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC
Confidence 110 011112233232222111000 00111 2467899999999998753 22499999999999988
Q ss_pred CeEEEEEc---CCc--EEeccEEEecCCCCchhhcccc
Q 024233 161 DKVSVVLE---NGQ--CYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 161 ~~~~v~~~---~g~--~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
+++++++. +|+ ++++|+||+|||.+|.+|+.+.
T Consensus 158 ~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 158 DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 88877663 353 7899999999999999999884
No 41
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.91 E-value=2.3e-22 Score=175.21 Aligned_cols=216 Identities=18% Similarity=0.283 Sum_probs=137.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
++||+||||||+|+++|+.|+++|++|+||||.+..... +..+ ...+.++++++|+++ ++++.+...+.... .+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~-~~~~-a~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL-GRIR-AGVLEQGTVDLLREA--GVDERMDREGLVHE-GTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC-Ccee-EeeECHHHHHHHHHC--CChHHHHhcCceec-ceE
Confidence 479999999999999999999999999999999742111 1111 233889999999999 88999987654322 111
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEe-cCCeEEEEEc-CCc--E
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD-HGDKVSVVLE-NGQ--C 172 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~ 172 (270)
+.+ .+ .....+.... ..+.+ ...+.+..+.+.|.+++.. ..++++++++.+.. +++.+.|++. +|+ +
T Consensus 77 -~~~--~~-~~~~~~~~~~--~~~~~-~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 77 -IAF--DG-QRFRIDLKAL--TGGKT-VMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred -Eee--CC-EEEEEecccc--CCCce-EEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 111 11 1222221110 11111 1244577888888776422 23778888888765 5566667775 775 7
Q ss_pred EeccEEEecCCCCchhhccccCCCCccccce--EeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCe-EEEEEEEe
Q 024233 173 YAGDLLVGADGIWSKVRKNLFGPQEAIFSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFNK 249 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-~~~~~~~~ 249 (270)
++||+||+|||.+|.+|+++.....+.+.++ ..|.++....+.. ....++.+++..+.++|+.++. ..|++..+
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV---SHELIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC---CCceEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 9999999999999999999854444444433 3555654322211 1123556677778888887554 34555443
No 42
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.91 E-value=3.5e-22 Score=174.39 Aligned_cols=216 Identities=20% Similarity=0.268 Sum_probs=134.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
++||+||||||+|+++|+.|+++|++|+|+||.+.... .+... +..+.|+++++|+++ |+++.+.+.+..... +.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~-~~~~~-a~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~-~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYV-EGRIR-AGVLEQGTVDLLREA--GVGERMDREGLVHDG-IE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccccc-eeEECHhHHHHHHHc--CChHHHHhcCCccCc-EE
Confidence 47999999999999999999999999999999974311 11111 234899999999999 889999876643321 11
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEe-cCCeEEEEE-cCCc--
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKD-HGDKVSVVL-ENGQ-- 171 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~-~~~~~~v~~-~~g~-- 171 (270)
+.. .+. ....+... ..+.+....+++..+.+.|.+.+ +.. +++++++++++. +++.+.+++ .+|+
T Consensus 77 -~~~--~g~-~~~~~~~~---~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~-v~~~~~v~~i~~~~~~~~~V~~~~~G~~~ 148 (392)
T PRK08243 77 -LRF--DGR-RHRIDLTE---LTGGRAVTVYGQTEVTRDLMAARLAAGGP-IRFEASDVALHDFDSDRPYVTYEKDGEEH 148 (392)
T ss_pred -EEE--CCE-EEEecccc---ccCCceEEEeCcHHHHHHHHHHHHhCCCe-EEEeeeEEEEEecCCCceEEEEEcCCeEE
Confidence 221 122 12222111 11122234567888888887653 334 899999999987 666777776 4664
Q ss_pred EEeccEEEecCCCCchhhccccCCCCccccce--EeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEe
Q 024233 172 CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNK 249 (270)
Q Consensus 172 ~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 249 (270)
+++||+||+|||.+|.+|+++.......+... ..|.++....+.. .........+.++.++.|.+++...+++...
T Consensus 149 ~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (392)
T PRK08243 149 RLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPV--SDELIYANHERGFALCSMRSPTRSRYYLQCP 226 (392)
T ss_pred EEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCC--CCceEEeeCCCceEEEecCCCCcEEEEEEec
Confidence 68999999999999999999854332333222 3444443222211 1112122234445455555555455555443
No 43
>PRK06834 hypothetical protein; Provisional
Probab=99.90 E-value=1.1e-21 Score=175.01 Aligned_cols=209 Identities=20% Similarity=0.222 Sum_probs=139.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
..+||+||||||+|+++|+.|+++|++|+||||.+.+... + ..+..++++++++|+++ ++++.+.+.+......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~-~--~Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~~- 75 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV-G--SRAGGLHARTLEVLDQR--GIADRFLAQGQVAQVT- 75 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-C--cceeeECHHHHHHHHHc--CcHHHHHhcCCccccc-
Confidence 3489999999999999999999999999999998643211 1 12467999999999999 8889887654322110
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
.+ ....++... .....++.+.+.+..+.+.|.+.+.. ..++++++|++++.+++++.+++.+|++++|
T Consensus 76 -~~-------~~~~~~~~~--~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 145 (488)
T PRK06834 76 -GF-------AATRLDISD--FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRA 145 (488)
T ss_pred -ee-------eeEeccccc--CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 00 011111110 11123445678899999999887532 1389999999999999999998888889999
Q ss_pred cEEEecCCCCchhhccccCC-CCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCC-CCeEEEEEE
Q 024233 176 DLLVGADGIWSKVRKNLFGP-QEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAF 247 (270)
Q Consensus 176 d~vI~AdG~~S~vr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~~~~~ 247 (270)
|+||+|||.+|.+|+.+... ....+.. ..+...+.. + .+.. ...++.+.+.+.+.|.+ ++++++.+.
T Consensus 146 ~~vVgADG~~S~vR~~lgi~~~g~~~~~-~~~~~dv~~-~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 214 (488)
T PRK06834 146 QYLVGCDGGRSLVRKAAGIDFPGWDPTT-SYLIAEVEM-T-EEPE--WGVHRDALGIHAFGRLEDEGPVRVMVT 214 (488)
T ss_pred CEEEEecCCCCCcHhhcCCCCCCCCcce-EEEEEEEEe-c-CCCC--cceeeCCCceEEEeccCCCCeEEEEEe
Confidence 99999999999999988321 1122222 222222211 1 1111 12344566777778887 666554443
No 44
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.89 E-value=8.2e-21 Score=172.40 Aligned_cols=166 Identities=18% Similarity=0.290 Sum_probs=120.6
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+..+||+||||||+||++|+.|+++|++|+||||.+..... ..++.+.++++++|+++ ++++++.+.+......
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~ 94 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG 94 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece
Confidence 46689999999999999999999999999999999643222 23588999999999999 8888887766432211
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEEEEEc--CCc
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE--NGQ 171 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~v~~~--~g~ 171 (270)
. ... .......++... ......+....+++..+++.|.+.+.. ..++++++|++++.+++++.+++. ++.
T Consensus 95 ~--~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~ 169 (547)
T PRK08132 95 K--VFL--RDEEVYRFDLLP-EPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP 169 (547)
T ss_pred e--EEe--CCCeEEEecCCC-CCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc
Confidence 1 111 112222322211 111223333568899999999887532 248899999999998888876654 443
Q ss_pred -EEeccEEEecCCCCchhhcccc
Q 024233 172 -CYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 172 -~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
+++||+||+|||.+|.+|+.+.
T Consensus 170 ~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 170 YTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred EEEEeCEEEECCCCCcHHHHHcC
Confidence 6999999999999999999874
No 45
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.87 E-value=1.2e-20 Score=158.43 Aligned_cols=208 Identities=19% Similarity=0.184 Sum_probs=131.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+|||||++|+++|+.|+++|++|+||||.+.+.. ...+..+.++....+... +. .... . .... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~----~~~~~~~~~~~~~~l~~~--~~-~~~~-~----~~~~-~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY----KPCGGALSPRVLEELDLP--LE-LIVN-L----VRGA-R 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc----ccccCccCHhHHHHhcCC--ch-hhhh-h----eeeE-E
Confidence 6999999999999999999999999999999965322 112345677777766654 21 1110 0 0001 0
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEEEEEcC-CcEEecc
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN-GQCYAGD 176 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~ad 176 (270)
+.. ..+.. .... ...+..+.++|..+.+.|.+.+.. ..++++++|+++..+++++.+.+.+ +.+++||
T Consensus 68 ~~~-~~~~~-~~~~-------~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 68 FFS-PNGDS-VEIP-------IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred EEc-CCCcE-EEec-------cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeC
Confidence 111 11111 1111 112335789999999999988632 2388999999999888887776654 4589999
Q ss_pred EEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEee----CCceEEEEeCCCCeEEEEEEEeC
Q 024233 177 LLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 177 ~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
+||+|||.+|.+|+.+.....+.... ..+.................++++ ++++.+++|+.++++.+.+....
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~ 215 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRS 215 (295)
T ss_pred EEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeecc
Confidence 99999999999999773222222222 233333322111122223334433 46889999999998766655443
No 46
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.86 E-value=3.3e-20 Score=162.00 Aligned_cols=212 Identities=19% Similarity=0.173 Sum_probs=131.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
+.+||+||||||||+++|+.|+++|++|+|+||...+..... . +-.+.+..++.+.. .....+. ... ....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~--~-~~~~~~~~l~~l~~---~~~~~i~-~~v-~~~~- 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC--C-GGGLSPRALEELIP---DFDEEIE-RKV-TGAR- 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc--c-cceechhhHHHhCC---Ccchhhh-eee-eeeE-
Confidence 568999999999999999999999999999999865322211 1 11234433322221 1111111 000 0000
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcC-CcEE
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN-GQCY 173 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~-g~~~ 173 (270)
+.. .........+ .+.++.++|..++++|.+.+ +.+ ++.+++++++..+++++.+.... +.++
T Consensus 73 --~~~-~~~~~~~~~~---------~~~~y~v~R~~fd~~La~~A~~aGae-~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 139 (396)
T COG0644 73 --IYF-PGEKVAIEVP---------VGEGYIVDRAKFDKWLAERAEEAGAE-LYPGTRVTGVIREDDGVVVGVRAGDDEV 139 (396)
T ss_pred --EEe-cCCceEEecC---------CCceEEEEhHHhhHHHHHHHHHcCCE-EEeceEEEEEEEeCCcEEEEEEcCCEEE
Confidence 000 0111111111 13469999999999998774 555 89999999999988887655544 4689
Q ss_pred eccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEE---eeCCceEEEEeCCCCeEEEEEEEeC
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVF---LGHKQYFVSSDVGAGKMQWYAFNKE 250 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~g~~~~~~~~~~ 250 (270)
+|++||+|||.+|.+++.+.....+.......+..+.. .|.+.....+..+ ..+.++.|++|..++.+++.+....
T Consensus 140 ~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~ 218 (396)
T COG0644 140 RAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIE-VPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLL 218 (396)
T ss_pred EcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEe-cCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEec
Confidence 99999999999999999995442222222333333332 2311111111111 2379999999999998888887655
Q ss_pred CC
Q 024233 251 PA 252 (270)
Q Consensus 251 ~~ 252 (270)
..
T Consensus 219 ~~ 220 (396)
T COG0644 219 DD 220 (396)
T ss_pred CC
Confidence 54
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.86 E-value=1.2e-19 Score=160.21 Aligned_cols=204 Identities=16% Similarity=0.236 Sum_probs=120.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
..++||+||||||+|+++|+.|+++|++|+|+||.+... ..+++++ . ...++++ ++.+.+...... ...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~---k~cgg~i--~---~~~l~~l--gl~~~~~~~~i~-~~~ 105 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNA---KPCGGAI--P---LCMVGEF--DLPLDIIDRKVT-KMK 105 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccccc--c---HhHHhhh--cCcHHHHHHHhh-hhe
Confidence 456899999999999999999999999999999985321 1123333 2 3456666 444444332111 001
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEec---CCeEEEEEcC-
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDH---GDKVSVVLEN- 169 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~---~~~~~v~~~~- 169 (270)
+.. .......+... ....++..+++|..|++.|.+++ +.+ ++.+ +++++... ++.+.+++.+
T Consensus 106 ---~~~--p~~~~v~~~~~----~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~-~~~~-~v~~i~~~~~~~~~~~v~~~~~ 174 (450)
T PLN00093 106 ---MIS--PSNVAVDIGKT----LKPHEYIGMVRREVLDSFLRERAQSNGAT-LING-LFTRIDVPKDPNGPYVIHYTSY 174 (450)
T ss_pred ---Eec--CCceEEEeccc----CCCCCeEEEecHHHHHHHHHHHHHHCCCE-EEec-eEEEEEeccCCCCcEEEEEEec
Confidence 111 11111222110 01123335699999999998875 444 5554 57777642 2445565532
Q ss_pred ------C--cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCC--cccccCceEEEee----CCceEEEE
Q 024233 170 ------G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSS 235 (270)
Q Consensus 170 ------g--~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~ 235 (270)
| .+++||+||+|||++|.+|+.+... . .....++.......+ .........++++ +++|.|++
T Consensus 175 ~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~Wif 251 (450)
T PLN00093 175 DSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAG-D--YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVF 251 (450)
T ss_pred cccccCCCccEEEeCEEEEcCCcchHHHHHhCCC-C--cceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEE
Confidence 3 4799999999999999999998432 1 222233333322211 1122233456655 67889999
Q ss_pred eCCCCeEEEEE
Q 024233 236 DVGAGKMQWYA 246 (270)
Q Consensus 236 p~~~g~~~~~~ 246 (270)
|.++ ++.+..
T Consensus 252 P~g~-~~~VG~ 261 (450)
T PLN00093 252 PKCD-HVAVGT 261 (450)
T ss_pred ECCC-cEEEEE
Confidence 9985 455555
No 48
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.86 E-value=1.4e-20 Score=155.43 Aligned_cols=224 Identities=18% Similarity=0.187 Sum_probs=158.3
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc-ccCCCCcccceeechhHHHHHHHcCcChHHHHHHhcccc
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 93 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~-~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (270)
..+..+||+|||||++|+++|+.|+|.|.+|+||||+-.. .+-.| .-++|.+...|.++ |+.+.++......
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivG-----EllQPGG~~~L~~L--Gl~Dcve~IDAQ~ 113 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVG-----ELLQPGGYLALSKL--GLEDCVEGIDAQR 113 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHH-----HhcCcchhHHHHHh--CHHHHhhcccceE
Confidence 3456689999999999999999999999999999998643 33443 45899999999999 7888887765543
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEE-EE--Ec
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VV--LE 168 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~-v~--~~ 168 (270)
-....-+. ++. ....+... ..-...+.+..++..++.+.|++.+.. ++-+....|+++.++++-+. |+ .+
T Consensus 114 v~Gy~ifk---~gk-~v~~pyP~-~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k 188 (509)
T KOG1298|consen 114 VTGYAIFK---DGK-EVDLPYPL-KNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNK 188 (509)
T ss_pred eeeeEEEe---CCc-eeeccCCC-cCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecC
Confidence 33332222 121 12222211 112233447889999999999998632 23444567778777766433 33 33
Q ss_pred CCc--EEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEE
Q 024233 169 NGQ--CYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 246 (270)
Q Consensus 169 ~g~--~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 246 (270)
.|+ +..|-+-|+|||..|.+|+.+.+...+.. ...+.|++......+.+.+.++++++...+.+||+....+++.+
T Consensus 189 ~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V--~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~ 266 (509)
T KOG1298|consen 189 EGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEV--PSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLV 266 (509)
T ss_pred CCceEEEecceEEEecchhHHHHHHhcCCccccc--chheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEE
Confidence 443 57789999999999999999965444322 23345665556666777788999999999999999999988887
Q ss_pred EEeCCC
Q 024233 247 FNKEPA 252 (270)
Q Consensus 247 ~~~~~~ 252 (270)
-++.+.
T Consensus 267 ~v~g~~ 272 (509)
T KOG1298|consen 267 DVPGQK 272 (509)
T ss_pred ecCccc
Confidence 776654
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.85 E-value=1.8e-19 Score=155.02 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=107.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+||||||+|+++|+.|+++ ++|+|+||.+...........+..+++++.++|++++........... ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-----~~~- 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-----QIF- 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-----ccc-
Confidence 7999999999999999999999 999999998643211101112356899999999999432111100000 000
Q ss_pred cccCCCCceeEeecCCc-ccccCCCCeEEEEeHHHHHHHHHHhcCCc-cEEeCceEEEEEecCCeEEEEE-cCCc--EEe
Q 024233 100 LVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVGDE-IILNESNVIDFKDHGDKVSVVL-ENGQ--CYA 174 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~-~~g~--~~~ 174 (270)
. ....+... .....+.++ ..++|..+.+.|.+..... .+++++++++++.+++++.+.+ .+|+ +++
T Consensus 75 -----~---~~~~~~~~~~~~~~~~~~-~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~ 145 (351)
T PRK11445 75 -----A---VKTIDLANSLTRNYQRSY-INIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHIT 145 (351)
T ss_pred -----e---eeEecccccchhhcCCCc-ccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEE
Confidence 0 00111100 001112222 4699999999998864322 3889999999998888888876 4564 689
Q ss_pred ccEEEecCCCCchhhccccC
Q 024233 175 GDLLVGADGIWSKVRKNLFG 194 (270)
Q Consensus 175 ad~vI~AdG~~S~vr~~~~~ 194 (270)
||+||+|||.+|.+|+.+..
T Consensus 146 a~~vV~AdG~~S~vr~~l~~ 165 (351)
T PRK11445 146 ARYLVGADGANSMVRRHLYP 165 (351)
T ss_pred eCEEEECCCCCcHHhHHhcC
Confidence 99999999999999998853
No 50
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.84 E-value=6.3e-19 Score=153.71 Aligned_cols=200 Identities=20% Similarity=0.283 Sum_probs=120.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc-CccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD-MSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~-~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+||+||||||+|+++|+.|+++|++|+|+|+. +.+. .++++ +.+ ..++.+ ++.+.+...... ...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~----~cg~~--i~~---~~l~~l--~i~~~~~~~~~~---~~~ 66 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIK----PCGGA--IPP---CLIEEF--DIPDSLIDRRVT---QMR 66 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcC----cCcCC--cCH---hhhhhc--CCchHHHhhhcc---eeE
Confidence 69999999999999999999999999999998 2221 12223 333 456666 444444332211 111
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcC------
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN------ 169 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~------ 169 (270)
+.. ..+.. ..... .....+...++|..|++.|.+++ +.+ ++. .+|+++..+++++.+++.+
T Consensus 67 -~~~-~~~~~-~~~~~-----~~~~~~~~~~~r~~fd~~L~~~a~~~G~~-v~~-~~v~~v~~~~~~~~v~~~~~~~~~~ 136 (388)
T TIGR02023 67 -MIS-PSRVP-IKVTI-----PSEDGYVGMVRREVFDSYLRERAQKAGAE-LIH-GLFLKLERDRDGVTLTYRTPKKGAG 136 (388)
T ss_pred -EEc-CCCce-eeecc-----CCCCCceEeeeHHHHHHHHHHHHHhCCCE-EEe-eEEEEEEEcCCeEEEEEEeccccCC
Confidence 111 11111 11110 01112223699999999998874 444 554 4699998888888777653
Q ss_pred C--cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCC--cccccCceEEEee----CCceEEEEeCCCCe
Q 024233 170 G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGK 241 (270)
Q Consensus 170 g--~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~p~~~g~ 241 (270)
+ .+++||+||+|||.+|.+|+.+..... .....++...+...+ .........+|++ ++++.|++|.++ .
T Consensus 137 ~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~ 213 (388)
T TIGR02023 137 GEKGSVEADVVIGADGANSPVAKELGLPKN--LPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-H 213 (388)
T ss_pred CcceEEEeCEEEECCCCCcHHHHHcCCCCC--CcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-e
Confidence 2 379999999999999999998742211 112233333332111 1122233445543 678999999974 4
Q ss_pred EEEEE
Q 024233 242 MQWYA 246 (270)
Q Consensus 242 ~~~~~ 246 (270)
+++..
T Consensus 214 ~~vg~ 218 (388)
T TIGR02023 214 IAVGT 218 (388)
T ss_pred eEEeE
Confidence 54444
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.81 E-value=9.2e-18 Score=146.60 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=116.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+||||||+|+++|+.|+++|++|+|+||.+... ..+++++ . ...++++ ++.+.+...... ...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~---~~cg~~i--~---~~~l~~~--g~~~~~~~~~i~---~~~- 66 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA---KPCGGAI--P---LCMVDEF--ALPRDIIDRRVT---KMK- 66 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccccc--c---HhhHhhc--cCchhHHHhhhc---eeE-
Confidence 589999999999999999999999999999985321 1222233 2 2456666 444443332111 010
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEe---cCCeEEEEE--cC--
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKD---HGDKVSVVL--EN-- 169 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~---~~~~~~v~~--~~-- 169 (270)
+.. .......+.... ...++...++|..|++.|.+++ +.. ++.+ ++++++. .++.+.+++ .+
T Consensus 67 ~~~--p~~~~~~~~~~~----~~~~~~~~v~R~~~d~~L~~~a~~~G~~-v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~ 138 (398)
T TIGR02028 67 MIS--PSNIAVDIGRTL----KEHEYIGMLRREVLDSFLRRRAADAGAT-LING-LVTKLSLPADADDPYTLHYISSDSG 138 (398)
T ss_pred Eec--CCceEEEeccCC----CCCCceeeeeHHHHHHHHHHHHHHCCcE-EEcc-eEEEEEeccCCCceEEEEEeecccc
Confidence 111 111111111100 1112224799999999998875 344 6655 4777753 234445543 22
Q ss_pred ---C--cEEeccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCc--ccccCceEEEee----CCceEEEEeCC
Q 024233 170 ---G--QCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVG 238 (270)
Q Consensus 170 ---g--~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~ 238 (270)
| .+++|++||+|||.+|.+|+.+... . +.....+.......+. ........++++ +++|.|++|.+
T Consensus 139 ~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~ 215 (398)
T TIGR02028 139 GPSGTRCTLEVDAVIGADGANSRVAKEIDAG-D--YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKC 215 (398)
T ss_pred ccCCCccEEEeCEEEECCCcchHHHHHhCCC-C--cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECC
Confidence 3 4799999999999999999988422 1 1122233222222111 112233455654 67899999998
Q ss_pred CCeEEEEE
Q 024233 239 AGKMQWYA 246 (270)
Q Consensus 239 ~g~~~~~~ 246 (270)
+ ++++.+
T Consensus 216 ~-~~~VG~ 222 (398)
T TIGR02028 216 D-HVAVGT 222 (398)
T ss_pred C-eEEEEE
Confidence 4 555554
No 52
>PLN02463 lycopene beta cyclase
Probab=99.79 E-value=1.1e-17 Score=147.18 Aligned_cols=146 Identities=17% Similarity=0.258 Sum_probs=98.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
..+||+||||||+|+++|+.|+++|++|+|||+.+...... .... -.+.++.+ ++.+.+..... ...
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~-----~~g~---w~~~l~~l--gl~~~l~~~w~---~~~ 93 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN-----NYGV---WVDEFEAL--GLLDCLDTTWP---GAV 93 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc-----ccch---HHHHHHHC--CcHHHHHhhCC---CcE
Confidence 45899999999999999999999999999999975321100 0101 12346666 55555433211 000
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC-ccEEeCceEEEEEecCCeEEEEEcCCcEEecc
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 176 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 176 (270)
. +.+ ... ......++ ..++|..|.+.|.+++.. .+-....+|++++.+++++.|++++|.+++||
T Consensus 94 v-~~~--~~~----------~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~ 159 (447)
T PLN02463 94 V-YID--DGK----------KKDLDRPY-GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQAS 159 (447)
T ss_pred E-EEe--CCC----------CccccCcc-eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcC
Confidence 0 000 000 00112343 468999999999887632 22223579999999888899999999899999
Q ss_pred EEEecCCCCchhhc
Q 024233 177 LLVGADGIWSKVRK 190 (270)
Q Consensus 177 ~vI~AdG~~S~vr~ 190 (270)
+||+|||.+|.+++
T Consensus 160 lVI~AdG~~s~l~~ 173 (447)
T PLN02463 160 LVLDATGFSRCLVQ 173 (447)
T ss_pred EEEECcCCCcCccC
Confidence 99999999998765
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.78 E-value=1.7e-17 Score=146.18 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=99.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccc----c
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCV----T 93 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~----~ 93 (270)
..+||+||||||+|+++|+.|+++|++|+||||.+.+.... ..++. +.... ++++- ..+...... .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~--~~gg~-l~~~~---~e~l~----~~~~~~~~~~~~~~ 73 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN--VTGGR-LYAHS---LEHII----PGFADSAPVERLIT 73 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc--cccce-echhh---HHHHh----hhhhhcCcccceee
Confidence 45899999999999999999999999999999986542211 11122 22222 22221 111111100 0
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCC
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG 170 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g 170 (270)
.... .+.. ..+.....+. ........+..+.+.|..+++.|.+.+ +.. ++.+++|+++..+++.+.+...++
T Consensus 74 ~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~-i~~~~~V~~i~~~~g~v~~v~~~g 148 (428)
T PRK10157 74 HEKL-AFMT-EKSAMTMDYC--NGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQ-LITGIRVDNLVQRDGKVVGVEADG 148 (428)
T ss_pred eeeE-EEEc-CCCceeeccc--cccccCCCCCceeeEHHHHHHHHHHHHHHCCCE-EECCCEEEEEEEeCCEEEEEEcCC
Confidence 0000 0111 1111111111 100011112357889999999998875 344 888999999988777776555677
Q ss_pred cEEeccEEEecCCCCchhhcccc
Q 024233 171 QCYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 171 ~~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
.+++|++||+|||.+|.+++.+.
T Consensus 149 ~~i~A~~VI~A~G~~s~l~~~lg 171 (428)
T PRK10157 149 DVIEAKTVILADGVNSILAEKLG 171 (428)
T ss_pred cEEECCEEEEEeCCCHHHHHHcC
Confidence 78999999999999999999873
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.78 E-value=1.9e-17 Score=145.79 Aligned_cols=163 Identities=26% Similarity=0.331 Sum_probs=97.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHH--HHHhccccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGD 95 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~--l~~~~~~~~~ 95 (270)
..+||+||||||+|+++|+.|+++|++|+||||.+.+.... .+++.+ .... ++.+-+++... +.. .....
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~gg~i--~~~~---~~~l~~~~~~~~~i~~--~~~~~ 75 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MTGGRL--YAHT---LEAIIPGFAASAPVER--KVTRE 75 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-ccCcee--eccc---HHHHcccccccCCccc--cccce
Confidence 45899999999999999999999999999999986542211 111111 2221 11111111100 000 00000
Q ss_pred cccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcE
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQC 172 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~ 172 (270)
.+ .+.. ........+... ........++.+.|..|++.|.+++ +.. ++.+++|+++..+++++.....++.+
T Consensus 76 ~~-~~~~-~~~~~~~~~~~~--~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~-i~~~~~V~~i~~~~~~v~~v~~~~~~ 150 (429)
T PRK10015 76 KI-SFLT-EESAVTLDFHRE--QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ-FIPGVRVDALVREGNKVTGVQAGDDI 150 (429)
T ss_pred eE-EEEe-CCCceEeecccC--CCCCCCcCceEeehhHHHHHHHHHHHHcCCE-EECCcEEEEEEEeCCEEEEEEeCCeE
Confidence 01 0111 111111111110 0001111258899999999998875 344 88899999998877777644455568
Q ss_pred EeccEEEecCCCCchhhcccc
Q 024233 173 YAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~~ 193 (270)
++|++||+|||.+|.+++.+.
T Consensus 151 i~A~~VI~AdG~~s~v~~~lg 171 (429)
T PRK10015 151 LEANVVILADGVNSMLGRSLG 171 (429)
T ss_pred EECCEEEEccCcchhhhcccC
Confidence 999999999999999999873
No 55
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.77 E-value=5.4e-17 Score=143.47 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=128.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g---~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
||+|||||++|.++|..|++.+ ++|+|||+...+.-+.| ....|....+++.+|....+-+.+.....+..+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vG-----e~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~ 75 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVG-----ESTLPSLRPFLRRLGIDEADFMRACDATFKLGI 75 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSE-----EE--THHHHCHHHHT--HHHHCHHCT-EEESEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCcc-----ccchHHHHHHHHHcCCChHHHHHHhCCeEeccE
Confidence 7999999999999999999998 89999999977665554 567788888899994333333666655444333
Q ss_pred ccc-ccCCCCceeEeecCC----------------------------------------ccc---ccCCCCeEEEEeHHH
Q 024233 98 NGL-VDGISGSWYIKFDTF----------------------------------------TPA---AEKGLPVTRVISRMT 133 (270)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~~----------------------------------------~~~---~~~~~~~~~~i~~~~ 133 (270)
... +..........+... ... ......+++.++|..
T Consensus 76 ~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~ 155 (454)
T PF04820_consen 76 RFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAK 155 (454)
T ss_dssp EEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHH
T ss_pred EeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHH
Confidence 321 111111111111110 000 011345689999999
Q ss_pred HHHHHHHhc---CCccEEeCceEEEEEecCCe-E-EEEEcCCcEEeccEEEecCCCCchhhccccCCCCccccce----E
Q 024233 134 LQQILAKAV---GDEIILNESNVIDFKDHGDK-V-SVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGY----T 204 (270)
Q Consensus 134 l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~----~ 204 (270)
+.+.|++.+ |.+ ++.+ +|+++..++++ + .|.+++|++++||+||+|+|..|.+.++.+.......+.. .
T Consensus 156 fd~~L~~~A~~~Gv~-~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~ 233 (454)
T PF04820_consen 156 FDQFLRRHAEERGVE-VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDR 233 (454)
T ss_dssp HHHHHHHHHHHTT-E-EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEE
T ss_pred HHHHHHHHHhcCCCE-EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccE
Confidence 999999874 455 5555 58888776665 3 5888899999999999999999998887532221111111 1
Q ss_pred eEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeCC
Q 024233 205 CYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 251 (270)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 251 (270)
++...... .+.....+.....+.+++|.+|++++..+ ++.+...
T Consensus 234 av~~~~~~--~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~ 277 (454)
T PF04820_consen 234 AVAVQVPN--EDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSD 277 (454)
T ss_dssp EEEEEEE---SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETT
T ss_pred EEEEecCc--CCCCCCceeEEecCCceEEEccCCCcceE-EEEeccc
Confidence 22222211 12223344456668999999999998766 4444433
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.74 E-value=5.2e-16 Score=138.67 Aligned_cols=195 Identities=17% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
...+||+||||||+|+++|+.|++.|++|+|||+........ + ++. ..++.+ ++.+.+.... ...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~-----G--vW~---~~l~~l--gl~~~i~~~w---~~~ 170 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----G--VWE---DEFKDL--GLEDCIEHVW---RDT 170 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc-----c--cch---hHHHhc--CcHHHHHhhc---CCc
Confidence 346899999999999999999999999999999863221111 1 221 235555 4433332211 000
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC-ccEEeCceEEEEEecCCeEE-EEEcCCcEEe
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVS-VVLENGQCYA 174 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~ 174 (270)
. +.. ..+.. ...+.++ ..++|..|.+.|.+++.. .+.+.+++|+++..+++++. +.+.+|.+++
T Consensus 171 ~--v~~-~~~~~----------~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~ 236 (529)
T PLN02697 171 I--VYL-DDDKP----------IMIGRAY-GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIP 236 (529)
T ss_pred E--EEe-cCCce----------eeccCcc-cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEE
Confidence 0 000 01110 0012232 368999999999988532 22336789999988777765 4567788999
Q ss_pred ccEEEecCCCCchhhccccCCCCccccceEeEeeeecCC--CcccccCceEEEee---------------CCceEEEEeC
Q 024233 175 GDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFV--PADIESVGYRVFLG---------------HKQYFVSSDV 237 (270)
Q Consensus 175 ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~~~p~ 237 (270)
|++||+|||++|...-.. ....+....+.++....+.. |.+++. .++++ ...|++++|.
T Consensus 237 A~lVI~AdG~~S~rl~~~-~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~---~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~ 312 (529)
T PLN02697 237 CRLATVASGAASGRLLQY-EVGGPRVCVQTAYGVEVEVENNPYDPSL---MVFMDYRDYFKEKVSHLEAEYPTFLYAMPM 312 (529)
T ss_pred CCEEEECCCcChhhhhcc-ccCCCCcccEEEEEEEEEecCCCCCcch---heeeccccccccccccccCCCceEEEEeec
Confidence 999999999999321111 11122233344443333322 222221 23322 1258899999
Q ss_pred CCCeEEE
Q 024233 238 GAGKMQW 244 (270)
Q Consensus 238 ~~g~~~~ 244 (270)
+++++.+
T Consensus 313 ~~~~~~V 319 (529)
T PLN02697 313 SSTRVFF 319 (529)
T ss_pred CCCeEEE
Confidence 9998777
No 57
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.71 E-value=1e-15 Score=131.74 Aligned_cols=170 Identities=25% Similarity=0.297 Sum_probs=101.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeec---hhH--HHHHHHcCcChHHHHHHhcc-ccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQ---SNA--LAALEAIDLDVAEEVMRAGC-VTG 94 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~---~~~--~~~l~~~~~~~~~~l~~~~~-~~~ 94 (270)
||+|||||++|+++|+.|+++|++|+|||+.......++...+.+... ... ...+...+...+.++.+... ...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 899999999999999999999999999999955444454443333222 111 11111111234444433221 111
Q ss_pred cccccc-ccCCC-----------------Cc--eeEeecC-------Ccc--cccCCCCeEEEEeHHHHHHHHHHhc---
Q 024233 95 DRINGL-VDGIS-----------------GS--WYIKFDT-------FTP--AAEKGLPVTRVISRMTLQQILAKAV--- 142 (270)
Q Consensus 95 ~~~~~~-~~~~~-----------------~~--~~~~~~~-------~~~--~~~~~~~~~~~i~~~~l~~~L~~~~--- 142 (270)
....+. .-... +. .....+. ... ......+.+..++...+.+.|.+.+
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 000000 00000 00 0011000 000 0011124467789999999998874
Q ss_pred CCccEEeCceEEEEEecCCeEE-EEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 143 GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 143 ~~~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
|.. ++.+++|++|..++++|+ |.+.+|+ ++||.||+|+|.||...-..
T Consensus 161 Gv~-i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~ 209 (358)
T PF01266_consen 161 GVE-IRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPL 209 (358)
T ss_dssp T-E-EEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHT
T ss_pred hhh-ccccccccchhhcccccccccccccc-cccceeEecccccceeeeec
Confidence 444 899999999999999998 9999997 99999999999998763333
No 58
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.71 E-value=5.7e-16 Score=129.44 Aligned_cols=221 Identities=20% Similarity=0.241 Sum_probs=144.3
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCccc----cCCCCcccc-eeechhHHHHHHHcCcChHHHHH
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAI----RGEGQYRGP-IQIQSNALAALEAIDLDVAEEVM 87 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~----g~~V~viE~~~~~~----~~~g~~~~~-~~l~~~~~~~l~~~~~~~~~~l~ 87 (270)
...+||+||||||+|+++|..|... .++|.|+|....+. ..+..+... ..+.|.+...++.+ +.|+.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~--~awd~i~ 111 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI--GAWDHIF 111 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc--CHHHHhh
Confidence 3479999999999999999999864 56899999984321 011222222 34889999999999 8999998
Q ss_pred HhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHH-hcCC---c-cEEeCceEEEEEec---
Q 024233 88 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK-AVGD---E-IILNESNVIDFKDH--- 159 (270)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~-~~~~---~-~i~~~~~v~~i~~~--- 159 (270)
.........+. .+++.... .+.++ ....+.+.++++....++..|.. +++. . .+....++.++...
T Consensus 112 ~~R~~~~~~~~-v~Ds~s~a-~I~~~----~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l 185 (481)
T KOG3855|consen 112 HDRYQKFSRML-VWDSCSAA-LILFD----HDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYL 185 (481)
T ss_pred hhcccccccee-eecccchh-hhhhc----cccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeecccccc
Confidence 76654433332 23333222 22222 12344566789999999999885 3321 1 37777887777642
Q ss_pred ---C--CeEEEEEcCCcEEeccEEEecCCCCchhhccccCCCCccc-cceEeEeeeecCCCcccccCceEEEeeCCceEE
Q 024233 160 ---G--DKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIF-SGYTCYTGIADFVPADIESVGYRVFLGHKQYFV 233 (270)
Q Consensus 160 ---~--~~~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (270)
+ ....+++.+|..+.+|++|+|||++|.+|+... .+.+.. ..+++..+.....+....+......|-|.+.++
T Consensus 186 ~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~sn-id~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiA 264 (481)
T KOG3855|consen 186 IKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASN-IDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIA 264 (481)
T ss_pred CCCCCcceEEEEeccCceeeeceeeccccccchhhhhcC-CCcccccccceeeeEEEEecccccccchhHHhcCCCCcee
Confidence 2 235688999999999999999999999999883 332222 223333443333222222222333456899999
Q ss_pred EEeCCCCe--EEEEE
Q 024233 234 SSDVGAGK--MQWYA 246 (270)
Q Consensus 234 ~~p~~~g~--~~~~~ 246 (270)
+.|+++.. ++|-.
T Consensus 265 llpl~d~~s~LvWSt 279 (481)
T KOG3855|consen 265 LLPLSDTLSSLVWST 279 (481)
T ss_pred ecccccccccceeec
Confidence 99999986 55533
No 59
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.70 E-value=2.1e-15 Score=131.61 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=91.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 100 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (270)
||+|||||++|+++|+.|++.|++|+|||+.+...... ...+... .++++ ++.+.+ ... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~-----~~~~~~~---~~~~~--~~~~~~-~~~--~------- 60 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-----TYGVWDD---DLSDL--GLADCV-EHV--W------- 60 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCc-----cccccHh---hhhhh--chhhHH-hhc--C-------
Confidence 79999999999999999999999999999985421111 1122222 12233 211111 110 0
Q ss_pred ccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCc-cEEeCceEEEEEec-CCeEEEEEcCCcEEeccEE
Q 024233 101 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE-IILNESNVIDFKDH-GDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~-~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~v 178 (270)
.+......+.. ......++ ..+++..+.+.|.+.+... ......+|+++..+ ++.+.+.+.+|++++|++|
T Consensus 61 ----~~~~~~~~~~~--~~~~~~~~-~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~V 133 (388)
T TIGR01790 61 ----PDVYEYRFPKQ--PRKLGTAY-GSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLV 133 (388)
T ss_pred ----CCceEEecCCc--chhcCCce-eEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEE
Confidence 00000110000 01112332 4699999999998875322 23346789998877 6667888888889999999
Q ss_pred EecCCCCchhhccc
Q 024233 179 VGADGIWSKVRKNL 192 (270)
Q Consensus 179 I~AdG~~S~vr~~~ 192 (270)
|+|+|.+|.+++..
T Consensus 134 I~A~G~~s~~~~~~ 147 (388)
T TIGR01790 134 IDARGFGPLVQYVR 147 (388)
T ss_pred EECCCCchhccccc
Confidence 99999999776543
No 60
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.69 E-value=5.5e-15 Score=128.13 Aligned_cols=140 Identities=20% Similarity=0.310 Sum_probs=92.3
Q ss_pred eEEEEcCCHHHHHHHHHH--HhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAA--KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~L--a~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
||+|||||+||+++|+.| ++.|.+|+|||+++....... + ..+..... + +.++.+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~-~--tW~~~~~~------~--~~~~~~v~~~w~------ 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPND-R--TWCFWEKD------L--GPLDSLVSHRWS------ 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCC-c--cccccccc------c--cchHHHHheecC------
Confidence 899999999999999999 788999999999865311111 0 01111110 1 111222211110
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcC-CccEEeCceEEEEEecCCeEEEEEcCCcEEeccE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 177 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~ 177 (270)
......+.... .....++ ..+++..|.+.|.+.+. ..+++.+.+|++|+.+++.+.+.+++|.+++|++
T Consensus 64 --------~~~v~~~~~~~-~~~~~~Y-~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~ 133 (374)
T PF05834_consen 64 --------GWRVYFPDGSR-ILIDYPY-CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARV 133 (374)
T ss_pred --------ceEEEeCCCce-EEcccce-EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeE
Confidence 00111111110 0111333 58999999999999976 2247889999999999998899999999999999
Q ss_pred EEecCCCCch
Q 024233 178 LVGADGIWSK 187 (270)
Q Consensus 178 vI~AdG~~S~ 187 (270)
||+|+|..+.
T Consensus 134 VvDa~g~~~~ 143 (374)
T PF05834_consen 134 VVDARGPSSP 143 (374)
T ss_pred EEECCCcccc
Confidence 9999997765
No 61
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.68 E-value=2.7e-15 Score=131.11 Aligned_cols=172 Identities=19% Similarity=0.275 Sum_probs=99.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCcc-ccCCCCcccce----eechhH-HHHHHHcCcChHHHHHHhc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSA-IRGEGQYRGPI----QIQSNA-LAALEAIDLDVAEEVMRAG 90 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~-~~~~g~~~~~~----~l~~~~-~~~l~~~~~~~~~~l~~~~ 90 (270)
.+||+|||||++|+++|++|+++ |++|+||||.... ...++.+.+.+ ...+.. ...|...+...+.++.+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999 9999999998532 33343332221 112222 1222222223444443221
Q ss_pred -cccCc--cccccccC--------------CCCceeEeec---------CCcccccCCCCeEEEEeHHHHHHHHHHhc--
Q 024233 91 -CVTGD--RINGLVDG--------------ISGSWYIKFD---------TFTPAAEKGLPVTRVISRMTLQQILAKAV-- 142 (270)
Q Consensus 91 -~~~~~--~~~~~~~~--------------~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~l~~~L~~~~-- 142 (270)
..... .+....+. ..+......+ ..........|....+++..+.+.|.+.+
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 11000 00000000 0000000000 00000111234456788999999998775
Q ss_pred -CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 143 -GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 143 -~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
+.. ++++++|+++..+++++.+.+.++ ++.||.||.|+|.||......
T Consensus 162 ~Gv~-i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~ 210 (393)
T PRK11728 162 RGGE-IRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKM 210 (393)
T ss_pred CCCE-EEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHH
Confidence 334 888999999988888888877766 799999999999999544333
No 62
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.66 E-value=2.5e-15 Score=140.96 Aligned_cols=142 Identities=27% Similarity=0.301 Sum_probs=97.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+|+||||||+||++|+.|+++ |++|+|+||++.. ... +.++.+.+++++.|+.++......+........ ...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-~~~---G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~-~~~ 76 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-DTF---GWGVVFSDATLGNLRAADPVSAAAIGDAFNHWD-DID 76 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-ccc---CcceEccHHHHHHHHhcCHHHHHHHHHhcccCC-ceE
Confidence 799999999999999999998 8999999998643 222 246889999999998874323334333221110 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
+. ..+.. ....+.++ ..++|..|.+.|.+++ +.. ++++++|+++... ..++
T Consensus 77 -~~--~~g~~---------~~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~-i~~g~~v~~i~~~------------~~~~ 130 (765)
T PRK08255 77 -VH--FKGRR---------IRSGGHGF-AGIGRKRLLNILQARCEELGVK-LVFETEVPDDQAL------------AADA 130 (765)
T ss_pred -EE--ECCEE---------EEECCeeE-ecCCHHHHHHHHHHHHHHcCCE-EEeCCccCchhhh------------hcCC
Confidence 11 01110 01123333 4689999999999875 333 8889988776321 2589
Q ss_pred cEEEecCCCCchhhcccc
Q 024233 176 DLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 176 d~vI~AdG~~S~vr~~~~ 193 (270)
|+||+|||.+|.+|+.+.
T Consensus 131 D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 131 DLVIASDGLNSRIRTRYA 148 (765)
T ss_pred CEEEEcCCCCHHHHHHHH
Confidence 999999999999999763
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.66 E-value=1.5e-14 Score=125.06 Aligned_cols=187 Identities=13% Similarity=0.220 Sum_probs=106.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
||+|||||++|+++|+.|+++ |++|+|+|+.+...... ..++... ++.+.....-. ..+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~-----tw~~~~~----------~~~~~~~~~~~---~~v~ 62 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNH-----TWSFFDS----------DLSDAQHAWLA---DLVQ 62 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcc-----cceeccc----------ccchhhhhhhh---hhhe
Confidence 799999999999999999987 99999999986322110 0111111 11111100000 0000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
..+ .......+.. ....+.++ ..+++..|.+.|.+.++.. ++.+++|+++ +++++++ ++|++++|++|
T Consensus 63 ~~W----~~~~v~~~~~--~~~l~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~V 130 (370)
T TIGR01789 63 TDW----PGYEVRFPKY--RRKLKTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSV 130 (370)
T ss_pred EeC----CCCEEECcch--hhhcCCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEE
Confidence 000 0011111111 11223454 6999999999999988776 7779999988 4455555 78889999999
Q ss_pred EecCCCCchhhccccCCCCccccceEeEeeee-cC-CCcccccCceEEEe---eC-CceEEEEeCCCCeEEEEE
Q 024233 179 VGADGIWSKVRKNLFGPQEAIFSGYTCYTGIA-DF-VPADIESVGYRVFL---GH-KQYFVSSDVGAGKMQWYA 246 (270)
Q Consensus 179 I~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---~~-~~~~~~~p~~~g~~~~~~ 246 (270)
|+|+|.+|..... .++.++.|+. .+ .|.+++...+.-+- .. ..+++++|++++++.|--
T Consensus 131 I~A~G~~s~~~~~---------~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~ 195 (370)
T TIGR01789 131 IDCRGFKPSAHLK---------GGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIED 195 (370)
T ss_pred EECCCCCCCcccc---------ceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEE
Confidence 9999998742211 2333333321 11 23222222111111 12 345556999999977643
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.66 E-value=6.3e-16 Score=129.58 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=97.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccc-ceeec--hhHHHHHHHcC---cChHHHHHHhcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG-PIQIQ--SNALAALEAID---LDVAEEVMRAGC 91 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~-~~~l~--~~~~~~l~~~~---~~~~~~l~~~~~ 91 (270)
+.+||+|||||+|||++|..++++|.+|+|||+.+...+.--.+++ ..+++ ..--+++.+.+ .-+...+.+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft- 80 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT- 80 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC-
Confidence 4689999999999999999999999999999999764332211111 12222 22334455442 11111111111
Q ss_pred ccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEc
Q 024233 92 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLE 168 (270)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~ 168 (270)
...+..+.....-. .. ....|--+.....-..+.++|..++ +.. ++.+++|.++..++.+..+.+.
T Consensus 81 --~~d~i~~~e~~Gi~-~~-------e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~-i~~~~~v~~v~~~~~~f~l~t~ 149 (408)
T COG2081 81 --PEDFIDWVEGLGIA-LK-------EEDLGRMFPDSDKASPIVDALLKELEALGVT-IRTRSRVSSVEKDDSGFRLDTS 149 (408)
T ss_pred --HHHHHHHHHhcCCe-eE-------EccCceecCCccchHHHHHHHHHHHHHcCcE-EEecceEEeEEecCceEEEEcC
Confidence 01111111111100 00 0111111111234577888887775 344 9999999999999989999999
Q ss_pred CCcEEeccEEEecCCCCchh
Q 024233 169 NGQCYAGDLLVGADGIWSKV 188 (270)
Q Consensus 169 ~g~~~~ad~vI~AdG~~S~v 188 (270)
+|++++||.+|+|+|..|.-
T Consensus 150 ~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 150 SGETVKCDSLILATGGKSWP 169 (408)
T ss_pred CCCEEEccEEEEecCCcCCC
Confidence 99999999999999977653
No 65
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.66 E-value=1.3e-14 Score=126.14 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=48.4
Q ss_pred EEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 127 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
..+++..+...+.+.+ +.. ++.+++|++++.+++++.+.+.+| +++||.||.|+|.|+.
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~-i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAE-LLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCE-EECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 4677888888776654 344 888999999999888888888777 7999999999999975
No 66
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=2.7e-14 Score=128.40 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=95.1
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChH-------HHHHHh
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVA-------EEVMRA 89 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~-------~~l~~~ 89 (270)
+..+||+|||||++|+++|+.|+++|++|+|+||.....+.++.+.+ +-+.+.+.+......+. ..+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~---lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ 80 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGK---LVHGGLRYLEYYEFRLVREALIEREVLLAA 80 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhh---hHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 45589999999999999999999999999999999654444443333 22223333332211111 111111
Q ss_pred ccccCcccccc-c------------------c--C----CCCceeEeecC----Cccccc--CC-CCeEEEEeHHHHHHH
Q 024233 90 GCVTGDRINGL-V------------------D--G----ISGSWYIKFDT----FTPAAE--KG-LPVTRVISRMTLQQI 137 (270)
Q Consensus 90 ~~~~~~~~~~~-~------------------~--~----~~~~~~~~~~~----~~~~~~--~~-~~~~~~i~~~~l~~~ 137 (270)
..........+ . + . ........... ...... .+ .+....++...+...
T Consensus 81 ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~ 160 (502)
T PRK13369 81 APHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVL 160 (502)
T ss_pred CCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHH
Confidence 11000000000 0 0 0 00000000000 000000 00 111235678888777
Q ss_pred HHHhc---CCccEEeCceEEEEEecCCeEEEEEcCC----cEEeccEEEecCCCCchhh
Q 024233 138 LAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLVGADGIWSKVR 189 (270)
Q Consensus 138 L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~ad~vI~AdG~~S~vr 189 (270)
|...+ |.. ++.+++|+++..+++.+.+.+.++ .+++|+.||+|+|.||.-.
T Consensus 161 l~~~a~~~Ga~-i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 161 NALDAAERGAT-ILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred HHHHHHHCCCE-EecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 76653 444 888999999998887777776554 3699999999999998643
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.65 E-value=1.2e-14 Score=126.47 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=95.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccc-cCCCCcccceeec---hhHHHHHHHcCcChHHHHHHhc-ccc-
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYRGPIQIQ---SNALAALEAIDLDVAEEVMRAG-CVT- 93 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~-~~~g~~~~~~~l~---~~~~~~l~~~~~~~~~~l~~~~-~~~- 93 (270)
+||+|||||++|+++|++|+++|++|+|||+..... ..++...+++... ......+...+..++.++.+.. ...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 599999999999999999999999999999975432 1221111112111 1111111111114444444321 110
Q ss_pred -CccccccccCCC-------------CceeEeec---------CCcccc---cCCCCeEEEEeHHHHHHHHHHhc---CC
Q 024233 94 -GDRINGLVDGIS-------------GSWYIKFD---------TFTPAA---EKGLPVTRVISRMTLQQILAKAV---GD 144 (270)
Q Consensus 94 -~~~~~~~~~~~~-------------~~~~~~~~---------~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~---~~ 144 (270)
......+..... +......+ ...... ....+.+..+++..+.+.|.+.+ +.
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~ 160 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA 160 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence 000000000000 00000000 000000 11123346788999999887764 44
Q ss_pred ccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCc-hhhccc
Q 024233 145 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS-KVRKNL 192 (270)
Q Consensus 145 ~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S-~vr~~~ 192 (270)
. ++.+++|++++.+++.+.+.+.++ ++.||.||+|+|.++ .+++.+
T Consensus 161 ~-~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 161 T-VRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred E-EECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 4 888999999998888888877666 799999999999985 455544
No 68
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.65 E-value=2.1e-14 Score=133.24 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=99.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC-ccccCCCCcccceeec--hh---HHHHHHH---cCcChHHHHHHh
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM-SAIRGEGQYRGPIQIQ--SN---ALAALEA---IDLDVAEEVMRA 89 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~-~~~~~~g~~~~~~~l~--~~---~~~~l~~---~~~~~~~~l~~~ 89 (270)
.+||+|||||++|+++|++|+++|++|+|||+.. .....++...+.+... .. ..++... ....++..+.+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~ 339 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAA 339 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999985 3344555444333211 00 1111100 011344444321
Q ss_pred ccccCccccccccC-CCCc----------------eeEeec---------CCcccccCCCCeEEEEeHHHHHHHHHHhcC
Q 024233 90 GCVTGDRINGLVDG-ISGS----------------WYIKFD---------TFTPAAEKGLPVTRVISRMTLQQILAKAVG 143 (270)
Q Consensus 90 ~~~~~~~~~~~~~~-~~~~----------------~~~~~~---------~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~ 143 (270)
+........+.... .+.. .....+ ........-.|.+..+++..+.+.|.+.+.
T Consensus 340 ~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~ 419 (662)
T PRK01747 340 GVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAG 419 (662)
T ss_pred CCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhcc
Confidence 21111110011000 0000 000000 000000111233456889999999988865
Q ss_pred C-ccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 144 D-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 144 ~-~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
. ..++++++|++++.+++++.+.+.++..++||.||+|+|.+|.
T Consensus 420 ~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 420 QQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred cCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 2 2388899999999888889888888877899999999999985
No 69
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.63 E-value=3.9e-14 Score=127.42 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=45.6
Q ss_pred EEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcC---C--cEEeccEEEecCCCCchh
Q 024233 128 VISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN---G--QCYAGDLLVGADGIWSKV 188 (270)
Q Consensus 128 ~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~---g--~~~~ad~vI~AdG~~S~v 188 (270)
.+++..+...+...+ |.. ++.+++|+++..+++.+.+.+.+ | .+++|+.||+|+|.|+.-
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~-i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAE-ILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCE-EEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 467777777765543 444 88899999998887777766653 4 379999999999999863
No 70
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.62 E-value=3.2e-14 Score=125.08 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=46.1
Q ss_pred EEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCC-----cEEeccEEEecCCCCchhhc
Q 024233 128 VISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLVGADGIWSKVRK 190 (270)
Q Consensus 128 ~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~ad~vI~AdG~~S~vr~ 190 (270)
.++...+.+.|.+.+ +.. ++.+++|++++.+++.+++.+.++ .+++||.||+|+|.||....
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~-i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~ 262 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQ-FRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALA 262 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCE-EEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHH
Confidence 345667777776664 444 888999999998888777655433 37999999999999986443
No 71
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.60 E-value=2.4e-14 Score=127.51 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=98.6
Q ss_pred CCCCCCCcceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCCCCcccceeechhH-HH-----------HHHH
Q 024233 12 NSDSENKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNA-LA-----------ALEA 77 (270)
Q Consensus 12 ~~~~~~~~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~g~~~~~~~l~~~~-~~-----------~l~~ 77 (270)
+....+.++||+|||||++|+++|++|+++ |.+|+|+|+.......++++.+.+...... .. .|.+
T Consensus 17 ~~L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~ 96 (460)
T TIGR03329 17 PPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVK 96 (460)
T ss_pred CCCCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHH
Confidence 334456678999999999999999999998 899999999866566677665532111000 00 0111
Q ss_pred cCcChH---HHHHH-hccccCccccccccC-CC-----------------Cce-eEeecCCccc---------ccCCCCe
Q 024233 78 IDLDVA---EEVMR-AGCVTGDRINGLVDG-IS-----------------GSW-YIKFDTFTPA---------AEKGLPV 125 (270)
Q Consensus 78 ~~~~~~---~~l~~-~~~~~~~~~~~~~~~-~~-----------------~~~-~~~~~~~~~~---------~~~~~~~ 125 (270)
.....+ .++.+ .+..+.....+.... .+ +.. ....+..... ...-.|.
T Consensus 97 ~~~~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~ 176 (460)
T TIGR03329 97 ASEQAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPV 176 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCC
Confidence 100111 22221 221111110011000 00 000 0000000000 0011233
Q ss_pred EEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 126 TRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 126 ~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
...+++..+.+.|.+.+ +.. |+.+++|++++. ++.+.|.+.+| +++||.||+|+|.||.
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~-i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVE-IHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCE-EECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 46788999999998764 444 889999999975 45566777766 6999999999999975
No 72
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=122.24 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=106.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCccc-----cCCCCcccceeechhHHHH-HHHcCcChHHHHHHh
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAI-----RGEGQYRGPIQIQSNALAA-LEAIDLDVAEEVMRA 89 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~~~-----~~~g~~~~~~~l~~~~~~~-l~~~~~~~~~~l~~~ 89 (270)
+.+||+|||||++|+++|+.|++.+ ++|+|+||..... .++|.-++++...|.+..+ +...+...+.++.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999986532 3444444455555553221 222111111222221
Q ss_pred cc----ccCcccccccc----------------------CCCCceeEeecCCc---ccccCCCCeEEEEeHHHHHHHHHH
Q 024233 90 GC----VTGDRINGLVD----------------------GISGSWYIKFDTFT---PAAEKGLPVTRVISRMTLQQILAK 140 (270)
Q Consensus 90 ~~----~~~~~~~~~~~----------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~l~~~L~~ 140 (270)
.. .++..+..+.+ ..+.+.+....... .....-.|.+..++..++...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 11 01110000000 00000000000000 001122344567889999988888
Q ss_pred hcCC--ccEEeCceEEEEEecCCe-EEEEEcCCcE-EeccEEEecCCCCchhhccccCC
Q 024233 141 AVGD--EIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLVGADGIWSKVRKNLFGP 195 (270)
Q Consensus 141 ~~~~--~~i~~~~~v~~i~~~~~~-~~v~~~~g~~-~~ad~vI~AdG~~S~vr~~~~~~ 195 (270)
.+.. ..++++++|++|+..+++ ..+.+.+|++ ++|+.||.|.|..|.-.-++.+.
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~ 220 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGI 220 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCC
Confidence 7532 249999999999998884 5677788866 99999999999998766666443
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.4e-14 Score=118.86 Aligned_cols=137 Identities=26% Similarity=0.320 Sum_probs=89.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccce-----eechhHHHHHHHcCcChHHHHHHhcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGC 91 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~-----~l~~~~~~~l~~~~~~~~~~l~~~~~ 91 (270)
...+||+||||||+|+++|+.|++.|++|+|+|+.+...... ..++. .+......+|+++ +.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~-----------gv 89 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEF-----------GI 89 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHC-----------CC
Confidence 356899999999999999999999999999999986542211 11111 1112222222222 11
Q ss_pred ccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCC-eEE---
Q 024233 92 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD-KVS--- 164 (270)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~-~~~--- 164 (270)
.. . .. ..+ .+.+++.++.+.|.+.+ +.. ++.+++|+++..+++ .+.
T Consensus 90 ~~-------~---------~~-------~~g---~~~vd~~~l~~~L~~~A~~~Gv~-I~~~t~V~dl~~~~~g~V~Gvv 142 (257)
T PRK04176 90 RY-------K---------EV-------EDG---LYVADSVEAAAKLAAAAIDAGAK-IFNGVSVEDVILREDPRVAGVV 142 (257)
T ss_pred Cc-------e---------ee-------cCc---ceeccHHHHHHHHHHHHHHcCCE-EEcCceeceeeEeCCCcEEEEE
Confidence 00 0 00 000 25678899999988774 444 888999999987655 332
Q ss_pred EEEc---------CCcEEeccEEEecCCCCchhhcccc
Q 024233 165 VVLE---------NGQCYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 165 v~~~---------~g~~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
+... +..+++|++||+|+|.+|.+.+.+.
T Consensus 143 ~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 143 INWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 2211 2247999999999999999998884
No 74
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.59 E-value=1e-13 Score=121.87 Aligned_cols=229 Identities=17% Similarity=0.121 Sum_probs=114.9
Q ss_pred CCCCCCCCCCcceEEEEcCCHHHHHHHHHHHhC-CC-cEEEEeccCccccCCCCcccceee---chhHHHHHHHcCcChH
Q 024233 9 PTNNSDSENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMSAIRGEGQYRGPIQI---QSNALAALEAIDLDVA 83 (270)
Q Consensus 9 ~~~~~~~~~~~~dV~IIGgG~aGl~~A~~La~~-g~-~V~viE~~~~~~~~~g~~~~~~~l---~~~~~~~l~~~~~~~~ 83 (270)
|..-+......+||+|||||++|+++|++|+++ |. +|+||||.......++.+.+.+.. .+....+. +.+..+|
T Consensus 20 ~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~-~~s~~l~ 98 (407)
T TIGR01373 20 PAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELY-EHAMKLW 98 (407)
T ss_pred cccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHH-HHHHHHH
Confidence 444444445678999999999999999999995 96 899999986544444444332211 11111111 1111344
Q ss_pred HHHHHh-ccccCcccccccc-CCC-----------------CceeEee---------cCCccc--------ccCCCCeEE
Q 024233 84 EEVMRA-GCVTGDRINGLVD-GIS-----------------GSWYIKF---------DTFTPA--------AEKGLPVTR 127 (270)
Q Consensus 84 ~~l~~~-~~~~~~~~~~~~~-~~~-----------------~~~~~~~---------~~~~~~--------~~~~~~~~~ 127 (270)
.++.+. +........+.+. ..+ +...... +..... ...-.+...
T Consensus 99 ~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g 178 (407)
T TIGR01373 99 EGLSQDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGG 178 (407)
T ss_pred HHHHHHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCC
Confidence 444332 1111000000000 000 0000000 000000 000011123
Q ss_pred EEeHHHHHHHHHHhc---CCccEEeCceEEEEEec-CCeE-EEEEcCCcEEeccEEEecCCCCch-hhccccCCCCcccc
Q 024233 128 VISRMTLQQILAKAV---GDEIILNESNVIDFKDH-GDKV-SVVLENGQCYAGDLLVGADGIWSK-VRKNLFGPQEAIFS 201 (270)
Q Consensus 128 ~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~~~~~~~~~~ 201 (270)
.+++..+...|.+.+ +.. ++.+++|++++.. ++.+ .+.+.+| ++.|+.||+|.|.|+. +++.+ +...+...
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~-~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~-g~~~~~~~ 255 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVD-IIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMA-GFRLPIES 255 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCE-EEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHc-CCCCCcCc
Confidence 556777777776654 444 8889999999764 4554 3666666 6999988887777764 44433 33333322
Q ss_pred ceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEE
Q 024233 202 GYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 246 (270)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 246 (270)
....+. +.+ +...... .++..++..+.+.|.++|++.+..
T Consensus 256 ~~~~~~-~~~--~~~~~~~--~~~~~~~~~~y~~p~~~g~~~ig~ 295 (407)
T TIGR01373 256 HPLQAL-VSE--PLKPIID--TVVMSNAVHFYVSQSDKGELVIGG 295 (407)
T ss_pred ccceEE-Eec--CCCCCcC--CeEEeCCCceEEEEcCCceEEEec
Confidence 222111 111 1111111 123334555677898888876654
No 75
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.57 E-value=8.8e-14 Score=113.72 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=87.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccce-----eechhHHHHHHHcCcChHHHHHHhcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGC 91 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~-----~l~~~~~~~l~~~~~~~~~~l~~~~~ 91 (270)
...+||+||||||+|+++|+.|+++|++|+|+||+........ .++. .+......+++.+ +.
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~gg~~~~~~~~~~~~~~~l~~~-----------gi 85 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GGGMLFSKIVVEKPAHEILDEF-----------GI 85 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CCCcceecccccchHHHHHHHC-----------CC
Confidence 3568999999999999999999999999999999965422211 1111 0111111122211 00
Q ss_pred ccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCC--eEE-E
Q 024233 92 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD--KVS-V 165 (270)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~--~~~-v 165 (270)
. + ...+.. .+..++.++.+.|.+.+ +.. ++.+++|+++..+++ .+. +
T Consensus 86 ~-------~------------------~~~~~g-~~~~~~~el~~~L~~~a~e~GV~-I~~~t~V~dli~~~~~~~V~GV 138 (254)
T TIGR00292 86 R-------Y------------------EDEGDG-YVVADSAEFISTLASKALQAGAK-IFNGTSVEDLITRDDTVGVAGV 138 (254)
T ss_pred C-------e------------------eeccCc-eEEeeHHHHHHHHHHHHHHcCCE-EECCcEEEEEEEeCCCCceEEE
Confidence 0 0 000111 14557888888887764 444 889999999988766 232 2
Q ss_pred EEc-----------CCcEEeccEEEecCCCCchhhccc
Q 024233 166 VLE-----------NGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 166 ~~~-----------~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
... +..+++|++||.|+|..|.+.+.+
T Consensus 139 v~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 139 VINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 221 224799999999999999887776
No 76
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.55 E-value=2.4e-13 Score=117.73 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=90.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeech---h-HHHHHHHcCcChHHHHHHhc-cccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS---N-ALAALEAIDLDVAEEVMRAG-CVTG 94 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~---~-~~~~l~~~~~~~~~~l~~~~-~~~~ 94 (270)
+||+|||||++|+++|++|+++|.+|+|+|+.......++.+.+.+.... . ..+ +.+.....+.++.+.. ....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~ 79 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWD-RARRSREIWLELAAKAGIWVR 79 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHH-HHHHHHHHHHHHHHHcCCCEE
Confidence 58999999999999999999999999999998654445554443332111 1 111 1111113333333221 1000
Q ss_pred --cccc------------ccccC--CCCceeEeecC------Cc----c--cccCCCCeEEEEeHHHHHHHHHHhc----
Q 024233 95 --DRIN------------GLVDG--ISGSWYIKFDT------FT----P--AAEKGLPVTRVISRMTLQQILAKAV---- 142 (270)
Q Consensus 95 --~~~~------------~~~~~--~~~~~~~~~~~------~~----~--~~~~~~~~~~~i~~~~l~~~L~~~~---- 142 (270)
..+. ..... ..+......+. .. . ....-.+....+++..+...|.+.+
T Consensus 80 ~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~ 159 (365)
T TIGR03364 80 ENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQH 159 (365)
T ss_pred eCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcC
Confidence 0000 00000 00000000000 00 0 0011123345788888888887764
Q ss_pred CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 143 GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 143 ~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
+.. ++.+++|++++.+ .+.+.+| .++||.||+|+|.+|.
T Consensus 160 Gv~-i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 160 GVE-FHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred CCE-EEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 333 8889999999643 5666666 4789999999999975
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.55 E-value=4.8e-13 Score=117.88 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=46.7
Q ss_pred EEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEE-EEEcCCcEEeccEEEecCCCCchh
Q 024233 127 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKV 188 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~S~v 188 (270)
..++...+.+.|.+.+ +.. ++++++|++++.+++++. +.+. +.+++||.||.|+|.|+.-
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~-i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVK-FRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTA 259 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCE-EEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHH
Confidence 3567778888887764 444 888999999998877764 5555 4479999999999999853
No 78
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.53 E-value=4.1e-13 Score=123.28 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=65.6
Q ss_pred EEEeHHHHHHHHHHhc---CCccEEeCceEEEEEec--CCeEE-EEE---cCCc--EEeccEEEecCCCCchhhccccC-
Q 024233 127 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDH--GDKVS-VVL---ENGQ--CYAGDLLVGADGIWSKVRKNLFG- 194 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~--~~~~~-v~~---~~g~--~~~ad~vI~AdG~~S~vr~~~~~- 194 (270)
..+++..+...|.+.+ |.. ++.+++|+++..+ ++++. +.. .+++ ++.||.||+|+|+||.-...+.+
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~-i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAA-VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcE-EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 4578999998888775 333 8889999999876 34433 333 2343 68999999999999874444432
Q ss_pred CCCc-cccceEeEeeeecCCCcc--cccCceEEEe-eCCceEEEEeCCCCeEEEE
Q 024233 195 PQEA-IFSGYTCYTGIADFVPAD--IESVGYRVFL-GHKQYFVSSDVGAGKMQWY 245 (270)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~p~~~g~~~~~ 245 (270)
...+ ...... +..+. |.. +......+.. ..++.+.+.|. +|++++.
T Consensus 306 ~~~~~I~p~kG-~hlvl---~~~~~~~~~~~i~~~~~dgr~~~~~P~-~g~~liG 355 (627)
T PLN02464 306 KAKPMICPSSG-VHIVL---PDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAG 355 (627)
T ss_pred cCCCceEeeee-EEEec---ccccCCCCceEEecCCCCCCEEEEEec-CCcEEEe
Confidence 2222 211111 11111 211 1111111211 25667888898 7776665
No 79
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.52 E-value=1.4e-12 Score=113.85 Aligned_cols=177 Identities=21% Similarity=0.270 Sum_probs=99.3
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhH------HHHHHHcCcChHHHHHHhc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNA------LAALEAIDLDVAEEVMRAG 90 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~------~~~l~~~~~~~~~~l~~~~ 90 (270)
++++||+|||||++|+++|++|+++|.+|+|+|+.......++...+.+...... ...+......+++.+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEEL 81 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999976554555444433211110 0111000001222222111
Q ss_pred cc-----cCccccccc-----------------cCCCCce-eEee-------cCCcc---cccCCCCeEEEEeHHHHHHH
Q 024233 91 CV-----TGDRINGLV-----------------DGISGSW-YIKF-------DTFTP---AAEKGLPVTRVISRMTLQQI 137 (270)
Q Consensus 91 ~~-----~~~~~~~~~-----------------~~~~~~~-~~~~-------~~~~~---~~~~~~~~~~~i~~~~l~~~ 137 (270)
.. ....+.... ....... .... +.... ....-.+....+++..+.+.
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~ 161 (387)
T COG0665 82 GTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRA 161 (387)
T ss_pred CcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHH
Confidence 00 000000000 0000000 0000 00000 00112233456788889888
Q ss_pred HHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCchhhccccC
Q 024233 138 LAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVRKNLFG 194 (270)
Q Consensus 138 L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~~~ 194 (270)
|.+.+ +...+..++.+..+..+...+.+.+.+|. +.||.||.|+|.|+.......+
T Consensus 162 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 162 LAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred HHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 88864 43447779999999875345678888886 9999999999999886554433
No 80
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.50 E-value=3.6e-13 Score=122.16 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=94.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeec-----hhH---------HHHHHHcCcChH
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQ-----SNA---------LAALEAIDLDVA 83 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~-----~~~---------~~~l~~~~~~~~ 83 (270)
..+||+|||||++|+++|+.|+++|++|+|||+.....+.++.+.+.+... ... ..+|.++...+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~- 83 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC- 83 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh-
Confidence 458999999999999999999999999999999865555555444332210 010 01122221100
Q ss_pred HHHHHhcc----ccCcccc---cccc--CCCCceeEee---------cCCcc--cccCCCCeEEEEeHHHHHHHHHHhc-
Q 024233 84 EEVMRAGC----VTGDRIN---GLVD--GISGSWYIKF---------DTFTP--AAEKGLPVTRVISRMTLQQILAKAV- 142 (270)
Q Consensus 84 ~~l~~~~~----~~~~~~~---~~~~--~~~~~~~~~~---------~~~~~--~~~~~~~~~~~i~~~~l~~~L~~~~- 142 (270)
+...+. ....... .+.. ...+...... +.... ....-+|. ..+++..+...+...+
T Consensus 84 --~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d-g~vdp~rl~~al~~~A~ 160 (546)
T PRK11101 84 --VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAK 160 (546)
T ss_pred --hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC-cEECHHHHHHHHHHHHH
Confidence 000000 0000000 0000 0000000000 00000 00111232 4678888888877654
Q ss_pred --CCccEEeCceEEEEEecCCeEE-EEEc---CC--cEEeccEEEecCCCCchhhccccC
Q 024233 143 --GDEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLVGADGIWSKVRKNLFG 194 (270)
Q Consensus 143 --~~~~i~~~~~v~~i~~~~~~~~-v~~~---~g--~~~~ad~vI~AdG~~S~vr~~~~~ 194 (270)
|.. ++.+++|+++..+++++. +.+. ++ .+++|+.||.|+|.|+.-...+.+
T Consensus 161 ~~Ga~-i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 161 EHGAQ-ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred hCCCE-EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 444 888999999998877654 4432 23 479999999999999975444433
No 81
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.49 E-value=7.2e-13 Score=117.70 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=52.9
Q ss_pred CCeEEEEeHHHHHHHHHHhcC---CccEEeCceEEEEEec-CCeEEEEE---cCCc--EEeccEEEecCCCCchhhccc
Q 024233 123 LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 123 ~~~~~~i~~~~l~~~L~~~~~---~~~i~~~~~v~~i~~~-~~~~~v~~---~~g~--~~~ad~vI~AdG~~S~vr~~~ 192 (270)
.|.+..++...+.+.|.+.+. ...++++++|++++.+ +++|++.. .+++ +++||+||+|.|.||.-..+.
T Consensus 175 ~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~ 253 (497)
T PRK13339 175 IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQK 253 (497)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 345567899999999988752 2248899999999887 66787763 3442 689999999999999644434
No 82
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.49 E-value=4.1e-13 Score=116.75 Aligned_cols=142 Identities=25% Similarity=0.310 Sum_probs=75.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC---CCCcccceeech-----------------hHHHHHHHcC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYRGPIQIQS-----------------NALAALEAID 79 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~---~g~~~~~~~l~~-----------------~~~~~l~~~~ 79 (270)
|||+|||||+|||++|+.|++.|.+|+|+||++..... +|. +...++. -....|++++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~--GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGN--GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGG--GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCC--CCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 69999999999999999999999999999999653211 110 0111111 1123444442
Q ss_pred c-ChHHHHHHhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEE
Q 024233 80 L-DVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVID 155 (270)
Q Consensus 80 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~ 155 (270)
. ++..-+.+.+.... .... +..+...-.-..+.++|++++ +.. ++++++|++
T Consensus 79 ~~d~~~ff~~~Gv~~~-------~~~~----------------gr~fP~s~~a~~Vv~~L~~~l~~~gv~-i~~~~~V~~ 134 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTK-------IEED----------------GRVFPKSDKASSVVDALLEELKRLGVE-IHFNTRVKS 134 (409)
T ss_dssp HHHHHHHHHHTT--EE-------E-ST----------------TEEEETT--HHHHHHHHHHHHHHHT-E-EE-S--EEE
T ss_pred HHHHHHHHHhcCCeEE-------EcCC----------------CEECCCCCcHHHHHHHHHHHHHHcCCE-EEeCCEeee
Confidence 1 11122222221100 0001 111111224567777777764 455 999999999
Q ss_pred EEecCCe-EEEEEcCCcEEeccEEEecCCCCch
Q 024233 156 FKDHGDK-VSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 156 i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
|+.++++ +.|.++++..+.||.||+|+|..|.
T Consensus 135 i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 135 IEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred eeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 9998887 7788877889999999999998764
No 83
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.4e-13 Score=103.08 Aligned_cols=136 Identities=23% Similarity=0.267 Sum_probs=92.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccc----ceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG----PIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~----~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
..||+||||||+||++|+.|+++|.+|+||||+-.+.++.+. ++ .+.+......+|+.++..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~-GGmlf~~iVv~~~a~~iL~e~gI~------------- 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG-GGMLFNKIVVREEADEILDEFGIR------------- 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc-cccccceeeecchHHHHHHHhCCc-------------
Confidence 469999999999999999999999999999999654333321 11 123444455555555210
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHh---cCCccEEeCceEEEEEecCC-eE---EEEE
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGD-KV---SVVL 167 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~-~~---~v~~ 167 (270)
+-. .+.. -+..+..++...|..+ ++.. |+.++.|+++...++ ++ .+..
T Consensus 96 -----ye~------------------~e~g-~~v~ds~e~~skl~~~a~~aGak-i~n~~~veDvi~r~~~rVaGvVvNW 150 (262)
T COG1635 96 -----YEE------------------EEDG-YYVADSAEFASKLAARALDAGAK-IFNGVSVEDVIVRDDPRVAGVVVNW 150 (262)
T ss_pred -----cee------------------cCCc-eEEecHHHHHHHHHHHHHhcCce-eeecceEEEEEEecCCceEEEEEec
Confidence 000 0011 2677888888888776 3545 888999999887666 43 3332
Q ss_pred c---------CCcEEeccEEEecCCCCchhhcccc
Q 024233 168 E---------NGQCYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 168 ~---------~g~~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
+ |--.++|++||.|+|+...+-+.+.
T Consensus 151 t~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~ 185 (262)
T COG1635 151 TPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLA 185 (262)
T ss_pred chhhhcccccCcceeeEEEEEeCCCCchHHHHHHH
Confidence 1 2347999999999999888776663
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.46 E-value=3.2e-13 Score=107.29 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred EEEcCCHHHHHHHHHHHhCCCc-EEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhc-cccCcccccc
Q 024233 23 LVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG-CVTGDRINGL 100 (270)
Q Consensus 23 ~IIGgG~aGl~~A~~La~~g~~-V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~ 100 (270)
+|||||++|+++|..|.++|.+ |+|||+.+. .| +.|....... ...+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~----~G---------------------g~w~~~~~~~~~~~~~~~--- 52 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR----PG---------------------GVWRRYYSYTRLHSPSFF--- 52 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS----ST---------------------THHHCH-TTTT-BSSSCC---
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC----CC---------------------CeeEEeCCCCccccCccc---
Confidence 6999999999999999999998 999999853 22 1111100000 0000000
Q ss_pred ccCCCCceeEeecCCcccc--cCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 101 VDGISGSWYIKFDTFTPAA--EKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
..... +..+....... ....+ .....+.++.+.|.+.+ +.. ++++++|+++..++++|.+++.++++++|
T Consensus 53 ~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~~l~-i~~~~~V~~v~~~~~~w~v~~~~~~~~~a 127 (203)
T PF13738_consen 53 SSDFG---LPDFESFSFDDSPEWRWP-HDFPSGEEVLDYLQEYAERFGLE-IRFNTRVESVRRDGDGWTVTTRDGRTIRA 127 (203)
T ss_dssp TGGSS-----CCCHSCHHHHHHHHHS-BSSEBHHHHHHHHHHHHHHTTGG-EETS--EEEEEEETTTEEEEETTS-EEEE
T ss_pred ccccc---CCcccccccccCCCCCCC-cccCCHHHHHHHHHHHHhhcCcc-cccCCEEEEEEEeccEEEEEEEecceeee
Confidence 00000 00000000000 00000 12356777777776654 444 99999999999999999999999988999
Q ss_pred cEEEecCCCCchhh
Q 024233 176 DLLVGADGIWSKVR 189 (270)
Q Consensus 176 d~vI~AdG~~S~vr 189 (270)
+.||+|+|..|.-+
T Consensus 128 ~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 128 DRVVLATGHYSHPR 141 (203)
T ss_dssp EEEEE---SSCSB-
T ss_pred eeEEEeeeccCCCC
Confidence 99999999876543
No 85
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.46 E-value=9.4e-13 Score=102.25 Aligned_cols=138 Identities=21% Similarity=0.257 Sum_probs=85.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCC---cccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ---YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~---~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
..+||+||||||+||++|+.|++.|++|+|||++..+..+.+. ....+.++.....+|++++..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~------------- 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP------------- 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce-------------
Confidence 4689999999999999999999999999999998654332221 111244566666677666210
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc-CCc-cEEeCceEEEEEecC-CeEE---EEEc
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-GDE-IILNESNVIDFKDHG-DKVS---VVLE 168 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~-~~~-~i~~~~~v~~i~~~~-~~~~---v~~~ 168 (270)
+.+ .+ +..+..+..++...|...+ ... .|+..+.|+++...+ +++. +..+
T Consensus 83 -----y~~------------------~~-~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt 138 (230)
T PF01946_consen 83 -----YEE------------------YG-DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWT 138 (230)
T ss_dssp ------EE-------------------S-SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEH
T ss_pred -----eEE------------------eC-CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEeh
Confidence 000 00 1126678888888887763 322 388899999988766 5543 3332
Q ss_pred ---------CCcEEeccEEEecCCCCchhhccc
Q 024233 169 ---------NGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 169 ---------~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
|--.++|++||.|+|+.+.+-+.+
T Consensus 139 ~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 139 PVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp HHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred HHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 123799999999999988766654
No 86
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.45 E-value=2.5e-12 Score=114.76 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=52.0
Q ss_pred CCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecC-CeEEEEEc---CC--cEEeccEEEecCCCCchhhccc
Q 024233 123 LPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 123 ~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~-~~~~v~~~---~g--~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
.|.+..+++..+.+.|.+.+ +.. ++++++|++++.++ ++|.+.+. +| .+++||+||+|.|.||.--...
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~-i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~ 246 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTT-IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQK 246 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCE-EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHH
Confidence 34557899999999998875 444 89999999999865 45666532 33 2699999999999998644444
No 87
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.45 E-value=9.3e-12 Score=109.82 Aligned_cols=173 Identities=22% Similarity=0.275 Sum_probs=101.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcC-hHHHHHHhcc----
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD-VAEEVMRAGC---- 91 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~-~~~~l~~~~~---- 91 (270)
+..+||+|||||+.|+-+|+.++.+|++|+|+|+++...+.|++ +-.+-+.+++.|.+.... ..+.+.+...
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsr---stkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~ 86 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSR---STKLIHGGLRYLEQYEFSLVREALAEREVLLRI 86 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCc---cccCccchhhhhhhcchHHHHHHHHHHHHHHHh
Confidence 37799999999999999999999999999999999875555554 344667777777776444 3333333221
Q ss_pred --ccCccccccccCCC-------------------C-------ceeEeec----CCccccc---C-C-CCeEEEEeHHHH
Q 024233 92 --VTGDRINGLVDGIS-------------------G-------SWYIKFD----TFTPAAE---K-G-LPVTRVISRMTL 134 (270)
Q Consensus 92 --~~~~~~~~~~~~~~-------------------~-------~~~~~~~----~~~~~~~---~-~-~~~~~~i~~~~l 134 (270)
........+.-..+ + ....... ..+.... . + .....+++..+|
T Consensus 87 APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRL 166 (532)
T COG0578 87 APHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARL 166 (532)
T ss_pred CccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHH
Confidence 11100000000000 0 0000000 0000000 0 0 011345566655
Q ss_pred HHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcC---Cc--EEeccEEEecCCCCchhhcccc
Q 024233 135 QQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 135 ~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
.-.+...+ |.. ++..++|+++..+++-+-|...| |+ +++|+.||.|+|+|+.--..+.
T Consensus 167 v~~~a~~A~~~Ga~-il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 167 VAANARDAAEHGAE-ILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHhcccc-hhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 54444332 444 88899999999988844455544 32 6999999999999998644443
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.44 E-value=1.1e-12 Score=116.88 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=50.4
Q ss_pred EEEeHHHHHHHHHHhcCC-------c-cEEeCceEEEEEec-CCeEEEEEcCCcEEeccEEEecCCCCchhhcc
Q 024233 127 RVISRMTLQQILAKAVGD-------E-IILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLVGADGIWSKVRKN 191 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~~~-------~-~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr~~ 191 (270)
..++...+.+.|.+.+.. . .++++++|++|..+ ++.+.|.+.+| +++||.||+|.|.||...-+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~ 278 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQ 278 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHH
Confidence 478899999888776532 1 38899999999987 45577887777 69999999999999964333
No 89
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.41 E-value=4.6e-12 Score=113.21 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCe-EEEEEc---CCc--EEeccEEEecCCCCchhhccc
Q 024233 123 LPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 123 ~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~~~ad~vI~AdG~~S~vr~~~ 192 (270)
.|.+..++...+.+.|.+.+ +...++++++|++++.++++ |.+.+. +|+ +++|++||+|+|.||.-..+.
T Consensus 174 ~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~ 252 (494)
T PRK05257 174 IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQK 252 (494)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 34567899999999998875 32248999999999986554 666543 353 699999999999998644434
No 90
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.40 E-value=8.5e-12 Score=112.22 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=88.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccccee-ec-hhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQ-SNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~-l~-~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
..+||+|||||+||+.+|+.+++.|.+|+|+|++....+.-+ +...+. +. ....+-++.++ +......+....
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~-CnpsiGG~akg~lvrEidalG-g~~g~~~d~~gi--- 77 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS-CNPAIGGIAKGHLVREIDALG-GEMGKAIDKTGI--- 77 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC-CccccccchhhHHHHHHHhcC-CHHHHHHhhccC---
Confidence 459999999999999999999999999999999852211100 000010 00 01122233332 222221111110
Q ss_pred cccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEE-EEEcCCcE
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQC 172 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~-v~~~~g~~ 172 (270)
.+. ..+...+. ....+. ..+++..+.+.|.+.+.. .+..+...|+++..+++.+. |.+.+|..
T Consensus 78 q~r-~ln~skGp------------AV~s~R-aQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~ 143 (618)
T PRK05192 78 QFR-MLNTSKGP------------AVRALR-AQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLE 143 (618)
T ss_pred cee-ecccCCCC------------ceeCcH-HhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCE
Confidence 000 00000000 000111 357888888888776532 22234678999887777765 77888999
Q ss_pred EeccEEEecCCCCchhhc
Q 024233 173 YAGDLLVGADGIWSKVRK 190 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~ 190 (270)
+.|+.||+|+|.++.-.-
T Consensus 144 I~Ak~VIlATGTFL~g~i 161 (618)
T PRK05192 144 FRAKAVVLTTGTFLRGKI 161 (618)
T ss_pred EECCEEEEeeCcchhcCe
Confidence 999999999998775433
No 91
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.39 E-value=2.7e-11 Score=99.40 Aligned_cols=167 Identities=20% Similarity=0.165 Sum_probs=93.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechh-H-----HHHHHHcCcChHHHHHHhc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSN-A-----LAALEAIDLDVAEEVMRAG 90 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~-~-----~~~l~~~~~~~~~~l~~~~ 90 (270)
.+..||+|||||+-||++|++|+++|.+++++|+.+.+....+..+..=.+.+. . ...++.+ ..|.++....
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~--e~W~~~~~~~ 82 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAY--EKWRNLPEES 82 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHH--HHHHhChhhh
Confidence 356799999999999999999999999999999997665333322211011111 1 0111111 2222222111
Q ss_pred c---ccCccccccccC----------------------CCCceeEeecC-C---cccccCCCCeEEEEeHHHHHHHHHHh
Q 024233 91 C---VTGDRINGLVDG----------------------ISGSWYIKFDT-F---TPAAEKGLPVTRVISRMTLQQILAKA 141 (270)
Q Consensus 91 ~---~~~~~~~~~~~~----------------------~~~~~~~~~~~-~---~~~~~~~~~~~~~i~~~~l~~~L~~~ 141 (270)
. .++......-+. .+.+.-.+++. . ......-.+.+.++....-.++|.+.
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 1 000000000000 00000111110 0 00011112335677777777777766
Q ss_pred c---CCccEEeCceEEEEEe---cCCeEEEEEcCCcEEeccEEEecCCCCc
Q 024233 142 V---GDEIILNESNVIDFKD---HGDKVSVVLENGQCYAGDLLVGADGIWS 186 (270)
Q Consensus 142 ~---~~~~i~~~~~v~~i~~---~~~~~~v~~~~g~~~~ad~vI~AdG~~S 186 (270)
+ |.. ++.+.+|+.+.. ++..+.|.+++|..+.|+-+|.+.|+|-
T Consensus 163 ~~~~G~i-~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 163 ARELGVI-FRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHcCeE-EecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 4 444 888999988874 3456789999999999999999999984
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.36 E-value=7.8e-12 Score=110.88 Aligned_cols=147 Identities=21% Similarity=0.239 Sum_probs=86.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHH-HHHHcC-------cChHHHHHHh
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALA-ALEAID-------LDVAEEVMRA 89 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~-~l~~~~-------~~~~~~l~~~ 89 (270)
.+++|+|||||++||++|.+|++.|++|+||||++.. ++. +...+.... .+ .+. -.+++.+..+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v-GG~------W~~~~~~~~d~~-~~~~~~~~~~s~~Y~~L~tn 80 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV-GGL------WVYTPKSESDPL-SLDPTRSIVHSSVYESLRTN 80 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC-cce------eecCCCcCCCcc-ccCCCCcccchhhhhhhhcc
Confidence 3579999999999999999999999999999999642 121 112211100 00 000 0111111111
Q ss_pred ccccCccccccccCCCCceeEeecCCccccc---CCCCeEEEEeHHHHHHHHHHhcC---Cc-cEEeCceEEEEEecCCe
Q 024233 90 GCVTGDRINGLVDGISGSWYIKFDTFTPAAE---KGLPVTRVISRMTLQQILAKAVG---DE-IILNESNVIDFKDHGDK 162 (270)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~---~~-~i~~~~~v~~i~~~~~~ 162 (270)
. .+....+........ ..........+.++.+.|.+.+. .. .|+++++|+++...+++
T Consensus 81 ~---------------p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~ 145 (461)
T PLN02172 81 L---------------PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK 145 (461)
T ss_pred C---------------CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe
Confidence 1 001111111110000 00000123467888888887753 22 38999999999988888
Q ss_pred EEEEEcCCc----EEeccEEEecCCCCch
Q 024233 163 VSVVLENGQ----CYAGDLLVGADGIWSK 187 (270)
Q Consensus 163 ~~v~~~~g~----~~~ad~vI~AdG~~S~ 187 (270)
|.|++.++. +..+|.||+|+|..+.
T Consensus 146 w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 146 WRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred EEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 998876432 4679999999998654
No 93
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.31 E-value=7.6e-11 Score=100.89 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=83.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechh--HHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSN--ALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
||+|||||.||+.+|+.+|+.|.+|+|+..+......-+ +..++.-... ..+-++.++-.+............
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~---- 75 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFR---- 75 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEE----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhh----
Confidence 899999999999999999999999999943322111110 1111221111 223345554222222222221100
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCCeEE-EEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~a 175 (270)
+.+...+ .. .......++|..+.+.+.+.+.. .......+|+++..+++.+. |.+.+|+.+.+
T Consensus 76 -~lN~skG------------pa-v~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a 141 (392)
T PF01134_consen 76 -MLNRSKG------------PA-VHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEA 141 (392)
T ss_dssp -EESTTS-------------GG-CTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEE
T ss_pred -cccccCC------------CC-ccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEec
Confidence 0000000 00 11112589999999999888643 22334679999998888876 88899999999
Q ss_pred cEEEecCCCC
Q 024233 176 DLLVGADGIW 185 (270)
Q Consensus 176 d~vI~AdG~~ 185 (270)
|.||+|+|.+
T Consensus 142 ~~vVlaTGtf 151 (392)
T PF01134_consen 142 DAVVLATGTF 151 (392)
T ss_dssp CEEEE-TTTG
T ss_pred CEEEEecccc
Confidence 9999999983
No 94
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.31 E-value=6.1e-11 Score=107.57 Aligned_cols=38 Identities=39% Similarity=0.574 Sum_probs=34.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+..+||+|||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45789999999999999999999999999999998653
No 95
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=1.4e-11 Score=107.73 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=89.5
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccccee-echhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~-l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
+...+|+|||||++||++|.+|.+.|++|+++||... .| +++ ..+....... .+++.+..+. .+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~----iG----GlW~y~~~~~~~~s----s~Y~~l~tn~---pK 68 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD----IG----GLWKYTENVEVVHS----SVYKSLRTNL---PK 68 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC----cc----ceEeecCccccccc----chhhhhhccC---Ch
Confidence 3467999999999999999999999999999999964 22 222 2222110000 1111211111 11
Q ss_pred cccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC----ccEEeCceEEEEEecC-CeEEEEEcCC
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVLENG 170 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-~~~~v~~~~g 170 (270)
...++.+ ...... .+ .+..++.++.+.|...+.. ..|+++++|..+.... +.|.|.+.++
T Consensus 69 e~~~~~d------------fpf~~~--~~-~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~ 133 (448)
T KOG1399|consen 69 EMMGYSD------------FPFPER--DP-RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDN 133 (448)
T ss_pred hhhcCCC------------CCCccc--Cc-ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecC
Confidence 1111111 110000 11 1445778999999888643 2499999999999888 7899888654
Q ss_pred ----cEEeccEEEecCCCCc
Q 024233 171 ----QCYAGDLLVGADGIWS 186 (270)
Q Consensus 171 ----~~~~ad~vI~AdG~~S 186 (270)
....+|.||+|+|.+.
T Consensus 134 ~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 134 GTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred CcceeEEEeeEEEEcccCcC
Confidence 4788999999999983
No 96
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.30 E-value=4.6e-11 Score=105.80 Aligned_cols=189 Identities=20% Similarity=0.247 Sum_probs=111.8
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCccccCCCCcccce-e-ech--hHHHHHHHcCcChHHHHHHh-
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPI-Q-IQS--NALAALEAIDLDVAEEVMRA- 89 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~-V~viE~~~~~~~~~g~~~~~~-~-l~~--~~~~~l~~~~~~~~~~l~~~- 89 (270)
.+...||+|||||..|+.+|++||++|.+ .+++|+. ....++.+..+++ . +.+ ..++++..-..-+..+++++
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~-~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEt 114 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS-RLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEET 114 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeee-eeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999998 5555555 4333443333332 2 222 23333322111233333332
Q ss_pred ccccCcccccc--cc-------------------CCCC------ceeEeecCCccc---ccCCCCeEEEEeHHHHHHHHH
Q 024233 90 GCVTGDRINGL--VD-------------------GISG------SWYIKFDTFTPA---AEKGLPVTRVISRMTLQQILA 139 (270)
Q Consensus 90 ~~~~~~~~~~~--~~-------------------~~~~------~~~~~~~~~~~~---~~~~~~~~~~i~~~~l~~~L~ 139 (270)
+...++.-.+. .. +... +....++..... ...-.|....+++..++++|.
T Consensus 115 gl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala 194 (856)
T KOG2844|consen 115 GLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALA 194 (856)
T ss_pred CCCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHH
Confidence 22211111000 00 0000 000011111111 122345567889999999998
Q ss_pred Hhc---CCccEEeCceEEEEEecCCe-EEEEEcCCcEEeccEEEecCCCCchhhccccCCCCccccceEeEe
Q 024233 140 KAV---GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYT 207 (270)
Q Consensus 140 ~~~---~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~ 207 (270)
.++ |+. |.+++.|++|....++ +.|.+..| .+++..||.|+|.|......+.+...|-+.-..+|.
T Consensus 195 ~~A~~~GA~-viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~Yv 264 (856)
T KOG2844|consen 195 RAASALGAL-VIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYV 264 (856)
T ss_pred HHHHhcCcE-EEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeeeeeEE
Confidence 874 555 8889999999875544 45777777 599999999999999888878666666665555544
No 97
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.28 E-value=2.4e-11 Score=109.28 Aligned_cols=135 Identities=24% Similarity=0.263 Sum_probs=80.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcC---hHHHHHHhccccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD---VAEEVMRAGCVTGDR 96 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~---~~~~l~~~~~~~~~~ 96 (270)
++|+|||||++||++|..|.+.|++|++|||++.. ++... ...+. ..+ +++.+.-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i-GG~W~------~~~~~-------~~g~~~~y~sl~~-------- 59 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI-GGLWR------YTENP-------EDGRSSVYDSLHT-------- 59 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS-SGGGC------HSTTC-------CCSEGGGSTT-B---------
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC-CccCe------eCCcC-------CCCccccccceEE--------
Confidence 58999999999999999999999999999999631 11111 00000 000 0000000
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC----ccEEeCceEEEEEecC-----CeEEEEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-----DKVSVVL 167 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-----~~~~v~~ 167 (270)
........++..+.. ...| ...++.++.+.|...+.. ..|+++++|++++..+ ++|.|++
T Consensus 60 -------n~sk~~~~fsdfp~p--~~~p--~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~ 128 (531)
T PF00743_consen 60 -------NTSKEMMAFSDFPFP--EDYP--DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTT 128 (531)
T ss_dssp -------SS-GGGSCCTTS-HC--CCCS--SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEE
T ss_pred -------eeCchHhcCCCcCCC--CCCC--CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEe
Confidence 111112222222211 1222 256899999999887632 2599999999998754 4688887
Q ss_pred cCCc---EEeccEEEecCCCCch
Q 024233 168 ENGQ---CYAGDLLVGADGIWSK 187 (270)
Q Consensus 168 ~~g~---~~~ad~vI~AdG~~S~ 187 (270)
.++. +..+|.||+|+|.++.
T Consensus 129 ~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 129 ENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TTTTEEEEEEECEEEEEE-SSSC
T ss_pred ecCCeEEEEEeCeEEEcCCCcCC
Confidence 6542 4578999999999874
No 98
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.28 E-value=1.2e-10 Score=101.99 Aligned_cols=151 Identities=22% Similarity=0.259 Sum_probs=81.2
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccce-eechh--HHHHHHHcCc--C-hHHHHHHhccccCcc
Q 024233 23 LVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-QIQSN--ALAALEAIDL--D-VAEEVMRAGCVTGDR 96 (270)
Q Consensus 23 ~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~-~l~~~--~~~~l~~~~~--~-~~~~l~~~~~~~~~~ 96 (270)
+|||||++|+++|+.|+++|.+|+|+||++.........+++- .+... ...+++.++. . +...+..... ..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~---~d 77 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSN---KD 77 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCH---HH
Confidence 6999999999999999999999999999875432211111121 11111 1112222210 0 0011111000 00
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
...+.. ..+-...... ...-+| ..-....+.+.|.+.+ +.. ++.+++|+++..+++.+.+.+ +++++
T Consensus 78 ~~~~~~-~~Gv~~~~~~-----~g~~~p--~~~~a~~v~~~L~~~l~~~gv~-i~~~~~V~~i~~~~~~~~v~~-~~~~i 147 (400)
T TIGR00275 78 LIDFFE-SLGLELKVEE-----DGRVFP--CSDSAADVLDALLNELKELGVE-ILTNSKVKSIKKDDNGFGVET-SGGEY 147 (400)
T ss_pred HHHHHH-HcCCeeEEec-----CCEeEC--CCCCHHHHHHHHHHHHHHCCCE-EEeCCEEEEEEecCCeEEEEE-CCcEE
Confidence 000110 0010000000 000011 0113456667776664 333 888999999988777777776 46689
Q ss_pred eccEEEecCCCCc
Q 024233 174 AGDLLVGADGIWS 186 (270)
Q Consensus 174 ~ad~vI~AdG~~S 186 (270)
.+|.||.|+|.+|
T Consensus 148 ~ad~VIlAtG~~s 160 (400)
T TIGR00275 148 EADKVILATGGLS 160 (400)
T ss_pred EcCEEEECCCCcc
Confidence 9999999999987
No 99
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.27 E-value=6.9e-11 Score=104.44 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=80.5
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~-V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
.+..+||+|||||++|+++|++|.++|.. ++||||+.. .+++..+ . ++ +.+ ..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~-~Gg~W~~------~--------ry-----~~l---~~--- 58 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD-VGGTWRY------N--------RY-----PGL---RL--- 58 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC-cCCcchh------c--------cC-----Cce---EE---
Confidence 34568999999999999999999999998 999999953 2222110 0 00 000 00
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEec--CCeEEEEEcCCcE
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDH--GDKVSVVLENGQC 172 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~~~v~~~~g~~ 172 (270)
....+...++..........+. ..--+..+...+.+......++++++|+.+..+ ++.|+|+++++.+
T Consensus 59 ---------~~p~~~~~~~~~p~~~~~~~~~-~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~ 128 (443)
T COG2072 59 ---------DSPKWLLGFPFLPFRWDEAFAP-FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT 128 (443)
T ss_pred ---------CCchheeccCCCccCCcccCCC-cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe
Confidence 1111122222222111111111 111355555555555333347777777776654 4579999998865
Q ss_pred --EeccEEEecCCCCc
Q 024233 173 --YAGDLLVGADGIWS 186 (270)
Q Consensus 173 --~~ad~vI~AdG~~S 186 (270)
++||.||.|+|..+
T Consensus 129 ~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 129 GELTADFVVVATGHLS 144 (443)
T ss_pred eeEecCEEEEeecCCC
Confidence 45999999999865
No 100
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.27 E-value=4.7e-11 Score=95.26 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=82.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC--CCC-----c-ccceeechhHHHHHHHcCcChHHHHHHhccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG--EGQ-----Y-RGPIQIQSNALAALEAIDLDVAEEVMRAGCV 92 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~--~g~-----~-~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~ 92 (270)
+|+|||+||+|+++|+.|+.+|++|+||||..-..++ +.+ + .++-++.++.-.+++-+ +.+.+.+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-----e~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-----EALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-----HHHHhCCce
Confidence 7999999999999999999999999999998531110 111 1 11223445444444433 333344432
Q ss_pred cCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC-c
Q 024233 93 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG-Q 171 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g-~ 171 (270)
..+.-. ++. ..+.. ........|+...-.-..|.+.|...+ .+..+++|+.+...++.|++++++| +
T Consensus 78 ~~W~~~-~~~-~~~~~-------~~~~~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~~~W~l~~~~g~~ 145 (331)
T COG3380 78 DVWTPA-VWT-FTGDG-------SPPRGDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTDNDWTLHTDDGTR 145 (331)
T ss_pred eecccc-ccc-cccCC-------CCCCCCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecCCeeEEEecCCCc
Confidence 111000 000 01000 000011111111112334444444332 3778999999999999999999766 4
Q ss_pred EEeccEEEecCC
Q 024233 172 CYAGDLLVGADG 183 (270)
Q Consensus 172 ~~~ad~vI~AdG 183 (270)
...+|.||+|-=
T Consensus 146 ~~~~d~vvla~P 157 (331)
T COG3380 146 HTQFDDVVLAIP 157 (331)
T ss_pred ccccceEEEecC
Confidence 678999998854
No 101
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.25 E-value=8.8e-12 Score=110.01 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=35.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechh-HHH-HHHHcCcChHHHHHHhccccCcccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSN-ALA-ALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~-~~~-~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
||+|||||++|+++|+.+++.|.+|+|||+.+... +....++...+... ... ... ++..++.+.-......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lG-G~~t~~~~~~~~~~~~~~~~~~----gi~~e~~~~~~~~~~~-- 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLG-GMATSGGVSPFDGNHDEDQVIG----GIFREFLNRLRARGGY-- 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSST-GGGGGSSS-EETTEEHHHHHHH----HHHHHHHHST--------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCC-CcceECCcCChhhcchhhccCC----CHHHHHHHHHhhhccc--
Confidence 89999999999999999999999999999986532 21111111122221 111 111 3344443322110000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHh---cCCccEEeCceEEEEEecCCeEE-EEEcC---Cc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVS-VVLEN---GQ 171 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~~~-v~~~~---g~ 171 (270)
... ...+......+++..+...|.+. .+.. +++++.|+++..+++++. |.+.+ ..
T Consensus 74 ------------~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~-v~~~t~v~~v~~~~~~i~~V~~~~~~g~~ 135 (428)
T PF12831_consen 74 ------------PQE-----DRYGWVSNVPFDPEVFKAVLDEMLAEAGVE-VLLGTRVVDVIRDGGRITGVIVETKSGRK 135 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------ccc-----cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 000 00000000234444444444443 3444 899999999999876654 44443 35
Q ss_pred EEeccEEEecCCC
Q 024233 172 CYAGDLLVGADGI 184 (270)
Q Consensus 172 ~~~ad~vI~AdG~ 184 (270)
+++|+++|.|+|-
T Consensus 136 ~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 136 EIRAKVFIDATGD 148 (428)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 8999999999994
No 102
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.25 E-value=7.4e-11 Score=104.76 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=36.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCccccCCCCcccce
Q 024233 21 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPI 65 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~~~~~~g~~~~~~ 65 (270)
||+|||||++|+++|+.++++| .+|+||||.+.....+..+++++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~ 46 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGM 46 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCcee
Confidence 7999999999999999999999 99999999876443443333333
No 103
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.25 E-value=2.4e-10 Score=103.03 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=34.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4689999999999999999999999999999998754
No 104
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.24 E-value=1.8e-10 Score=103.03 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=33.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||||++|+++|+.|+++|.+|+||||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 458999999999999999999999999999999864
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.20 E-value=6.8e-10 Score=99.74 Aligned_cols=167 Identities=21% Similarity=0.186 Sum_probs=86.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceee--ch-hH-----HHHHHHc----CcChHHHH
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQI--QS-NA-----LAALEAI----DLDVAEEV 86 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l--~~-~~-----~~~l~~~----~~~~~~~l 86 (270)
.+||+|||||+|||++|+.+++.|. |+|+||.+.....+....+++.. .+ .+ .+.++.- ++.+...+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999996533322222223321 11 11 1111110 01111111
Q ss_pred HHhccccCcccc--c--cccCCCCceeEeecCCcccccCCCCeEEEE---eHHHHHHHHHHhcCC--c-cEEeCceEEEE
Q 024233 87 MRAGCVTGDRIN--G--LVDGISGSWYIKFDTFTPAAEKGLPVTRVI---SRMTLQQILAKAVGD--E-IILNESNVIDF 156 (270)
Q Consensus 87 ~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~l~~~L~~~~~~--~-~i~~~~~v~~i 156 (270)
.+........+. + +.....+....... .....+..... ....+.+.|.+.+.. . .++.++.|+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~-----gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l 155 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTRE-----GGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDL 155 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCC-----CCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeee
Confidence 111110000000 0 00000111000000 00111111111 235777888776532 2 48999999999
Q ss_pred EecCCeEE-EEEcC-C--cEEeccEEEecCCCCchhhcc
Q 024233 157 KDHGDKVS-VVLEN-G--QCYAGDLLVGADGIWSKVRKN 191 (270)
Q Consensus 157 ~~~~~~~~-v~~~~-g--~~~~ad~vI~AdG~~S~vr~~ 191 (270)
..+++.+. +...+ + ..+.|+.||+|+|.+|.+...
T Consensus 156 ~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~~ 194 (488)
T TIGR00551 156 LIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQY 194 (488)
T ss_pred eccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCCC
Confidence 87766554 33332 3 368999999999999986553
No 106
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.20 E-value=2e-10 Score=96.66 Aligned_cols=110 Identities=23% Similarity=0.371 Sum_probs=74.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
+||+|||||++|+++|..|++.|++|+|||+.+. .| .+.... . +..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg----~~~~~~---------------~-----------~~~ 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP----GG----QLTTTT---------------E-----------VEN 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC----Cc----ceeecc---------------c-----------ccc
Confidence 6899999999999999999999999999998852 11 110000 0 000
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHh---cCCccEEeCceEEEEEecCCeEEEEEcCCcEEecc
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 176 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 176 (270)
+ +. .+ ..+...++...+.+. .+.. ++. ++|+++..+++.+.+.+.++.++++|
T Consensus 47 ~------------~~--------~~--~~~~~~~~~~~l~~~~~~~gv~-~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d 102 (300)
T TIGR01292 47 Y------------PG--------FP--EGISGPELMEKMKEQAVKFGAE-IIY-EEVIKVDLSDRPFKVKTGDGKEYTAK 102 (300)
T ss_pred c------------CC--------CC--CCCChHHHHHHHHHHHHHcCCe-EEE-EEEEEEEecCCeeEEEeCCCCEEEeC
Confidence 0 00 00 011223444444443 3444 565 89999998888888888888899999
Q ss_pred EEEecCCCCch
Q 024233 177 LLVGADGIWSK 187 (270)
Q Consensus 177 ~vI~AdG~~S~ 187 (270)
.||+|+|.+..
T Consensus 103 ~liiAtG~~~~ 113 (300)
T TIGR01292 103 AVIIATGASAR 113 (300)
T ss_pred EEEECCCCCcc
Confidence 99999998653
No 107
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.17 E-value=6.5e-10 Score=84.48 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=45.0
Q ss_pred EEEeHHHHHHHHHHhc-------C--CccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 127 RVISRMTLQQILAKAV-------G--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~-------~--~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
...+|..+-+.|.+.+ . ..+.+...+|+++...++++.+.+++|..+.+|.||+|+|.
T Consensus 89 ~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 89 DFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4556777766665542 1 12345567999999999999999999999999999999995
No 108
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.17 E-value=5.3e-10 Score=102.29 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=32.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
||+|||||++|+++|+.++++|.+|+|+||.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 7999999999999999999999999999998653
No 109
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=5.3e-10 Score=102.28 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCC---ccEEeCceEEEEEecCCeEE----EEEcCC--cEEeccEEEecCCCCchhhc
Q 024233 132 MTLQQILAKAVGD---EIILNESNVIDFKDHGDKVS----VVLENG--QCYAGDLLVGADGIWSKVRK 190 (270)
Q Consensus 132 ~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~~~----v~~~~g--~~~~ad~vI~AdG~~S~vr~ 190 (270)
..|.+.|.+.+.. -.++.++.++++..+++.+. +...+| ..+.|+.||+|+|..|.+.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~ 200 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR 200 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCC
Confidence 4567777665421 13788999999988776654 233466 37899999999999997643
No 110
>PLN02661 Putative thiazole synthesis
Probab=99.15 E-value=9.9e-10 Score=92.75 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~~~~~ 54 (270)
...+||+|||||++|+++|+.|+++ |++|+||||....
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 4467999999999999999999986 8999999998543
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.14 E-value=5.3e-10 Score=101.13 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=77.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
...+||+||||||+|+++|..|++.|++|+|+|+.. .| .+ .. .. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-----GG----~~-~~--------~~--~--------------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-----GG----QV-LD--------TM--G--------------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CC----ee-ec--------cC--c---------------
Confidence 456899999999999999999999999999997641 11 01 00 00 0
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
+..+. +.+ .....++.+.|.+.+ +.. ++.+++|+++...++.+.+.+.++.++
T Consensus 254 ~~~~~--------------------~~~---~~~~~~l~~~l~~~~~~~gv~-i~~~~~V~~I~~~~~~~~V~~~~g~~i 309 (517)
T PRK15317 254 IENFI--------------------SVP---ETEGPKLAAALEEHVKEYDVD-IMNLQRASKLEPAAGLIEVELANGAVL 309 (517)
T ss_pred ccccC--------------------CCC---CCCHHHHHHHHHHHHHHCCCE-EEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 00000 000 123445666665543 444 778899999988878888888888899
Q ss_pred eccEEEecCCCCc
Q 024233 174 AGDLLVGADGIWS 186 (270)
Q Consensus 174 ~ad~vI~AdG~~S 186 (270)
.+|.||+|+|..+
T Consensus 310 ~a~~vViAtG~~~ 322 (517)
T PRK15317 310 KAKTVILATGARW 322 (517)
T ss_pred EcCEEEECCCCCc
Confidence 9999999999865
No 112
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.3e-10 Score=97.94 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=32.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||+|.+||++|+.++ .|.+|+|+||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 4589999999999999999985 69999999998654
No 113
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.14 E-value=6.3e-10 Score=98.16 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=39.7
Q ss_pred eHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEE-EEEc---CCc--EEeccEEEecCCCCch
Q 024233 130 SRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLVGADGIWSK 187 (270)
Q Consensus 130 ~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~-v~~~---~g~--~~~ad~vI~AdG~~S~ 187 (270)
.-..+.+.|.+.+ +.+ |+++++++++..++++|+ +... +|+ +++|+-||+|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~-i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVD-IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEE-EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCee-eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4567777777764 444 999999999999888765 3333 454 6889999999999985
No 114
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.13 E-value=1.3e-09 Score=98.28 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=85.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccccee-echh-HHHHHHHcCcChHHHHHH-hccccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQSN-ALAALEAIDLDVAEEVMR-AGCVTGDR 96 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~-l~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~~ 96 (270)
+||+|||||++|+.+|..+++.|.+|+|+|++....+..+ +...+. +... ..+-++.++ +....+.. .......
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~-c~ps~gG~a~g~l~rEidaLG-G~~~~~~d~~~i~~r~- 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCS-CNPAIGGPAKGILVKEIDALG-GLMGKAADKAGLQFRV- 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCC-ccccccccccchhhhhhhccc-chHHHHHHhhceehee-
Confidence 6999999999999999999999999999999743211100 000000 0000 112233332 11111111 1110000
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEec-CCeE-EEEEcCCcE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKV-SVVLENGQC 172 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~ 172 (270)
.....+ .....+. ..+++..+.+.|.+.+.. .+......|+++..+ ++.+ .|.+.+|..
T Consensus 78 ----ln~skg------------pAV~~~R-aQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~ 140 (617)
T TIGR00136 78 ----LNSSKG------------PAVRATR-AQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLK 140 (617)
T ss_pred ----cccCCC------------CcccccH-HhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCE
Confidence 000000 0011111 367888888888777532 223334578887664 4444 477888889
Q ss_pred EeccEEEecCCCCchhhccc
Q 024233 173 YAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 173 ~~ad~vI~AdG~~S~vr~~~ 192 (270)
+.|+.||+|+|.++.-+-.+
T Consensus 141 I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 141 FRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred EECCEEEEccCcccCCCEEe
Confidence 99999999999997544443
No 115
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=8.5e-10 Score=101.02 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=34.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC---CcEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g---~~V~viE~~~~~~ 55 (270)
..+||+|||||+|||++|+.++++| .+|+|+||.+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 4579999999999999999999998 8999999986543
No 116
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=1e-09 Score=100.43 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~ 53 (270)
..+||+|||||+|||++|+.+++.| .+|+|+||.+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 4579999999999999999999874 89999999864
No 117
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.12 E-value=1.2e-09 Score=99.90 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=85.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCCCCccccee--ec-hhHH-----HHH------------
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQ--IQ-SNAL-----AAL------------ 75 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~g~~~~~~~--l~-~~~~-----~~l------------ 75 (270)
..+||+|||||+|||++|+.+++. |.+|+|+||.......+....+++. .. ..+. +.+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 357999999999999999999987 5799999998654333322222222 11 1111 111
Q ss_pred ---HHcCcChHHHHHHhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEE---eHHHHHHHHHHhcC---Ccc
Q 024233 76 ---EAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVI---SRMTLQQILAKAVG---DEI 146 (270)
Q Consensus 76 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~l~~~L~~~~~---~~~ 146 (270)
-+-.....+.|.+.+.... ...++....... .....+..+.. .-..|.+.|.+++. .-.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~-------~~~~g~~~~~~~-----gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~ 149 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWS-------RKPDGRVNVRRF-----GGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM 149 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccE-------ecCCCceeeecc-----CCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE
Confidence 1111111222222221110 001111100000 00001100111 23567777777642 123
Q ss_pred EEeCceEEEEEecCCeEE----EEEcCC--cEEeccEEEecCCCCchhh
Q 024233 147 ILNESNVIDFKDHGDKVS----VVLENG--QCYAGDLLVGADGIWSKVR 189 (270)
Q Consensus 147 i~~~~~v~~i~~~~~~~~----v~~~~g--~~~~ad~vI~AdG~~S~vr 189 (270)
++.++.++++..+++.+. +...+| ..+.|+.||+|+|..+.+-
T Consensus 150 i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 198 (580)
T TIGR01176 150 RYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVY 198 (580)
T ss_pred EEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccc
Confidence 788999999988777654 223456 3689999999999998753
No 118
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.12 E-value=1.8e-09 Score=96.50 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+||+|||||++||++|+.+++.|.+|+|+||.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999985
No 119
>PRK07121 hypothetical protein; Validated
Probab=99.12 E-value=2.8e-09 Score=95.99 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=34.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||+|.+|+++|+.++++|.+|+||||.+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5789999999999999999999999999999998653
No 120
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.9e-10 Score=91.98 Aligned_cols=114 Identities=25% Similarity=0.416 Sum_probs=75.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~-V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
+.+||+||||||+||++|++++|+|++ ++|+|+.... |. + ..+. .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g----g~--------~-----------~~~~-----------~ 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG----GQ--------L-----------TKTT-----------D 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC----Cc--------c-----------ccce-----------e
Confidence 468999999999999999999999998 7777776421 10 0 0000 0
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
+. .+ .+.+ ..+.-.+|.+.+.+++ +.. +.. ..|.++...++.+.+.+.++. +
T Consensus 48 ve------------ny--------pg~~--~~~~g~~L~~~~~~~a~~~~~~-~~~-~~v~~v~~~~~~F~v~t~~~~-~ 102 (305)
T COG0492 48 VE------------NY--------PGFP--GGILGPELMEQMKEQAEKFGVE-IVE-DEVEKVELEGGPFKVKTDKGT-Y 102 (305)
T ss_pred ec------------CC--------CCCc--cCCchHHHHHHHHHHHhhcCeE-EEE-EEEEEEeecCceEEEEECCCe-E
Confidence 00 00 0111 1234556666666664 333 333 677777776667788888887 9
Q ss_pred eccEEEecCCCCchhhc
Q 024233 174 AGDLLVGADGIWSKVRK 190 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~ 190 (270)
+|+.||+|+|....-.+
T Consensus 103 ~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 103 EAKAVIIATGAGARKLG 119 (305)
T ss_pred EEeEEEECcCCcccCCC
Confidence 99999999998765443
No 121
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2.6e-09 Score=98.59 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=33.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||||.|||++|+.+++.|.+|+|+|+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 467999999999999999999999999999998644
No 122
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.08 E-value=2.5e-09 Score=96.48 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=84.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeec--h-hHH-----HHHHHc----C-------
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQ--S-NAL-----AALEAI----D------- 79 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~--~-~~~-----~~l~~~----~------- 79 (270)
.+||+|||+|.|||++|+.+++ |.+|+|+||.+.....+....+++... + .+. +.++.- +
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 5799999999999999999987 899999999975433332223333211 1 111 111110 0
Q ss_pred ----cChHHHHHHhccccCccccccccCCCCceeEeecCCcccccCCCCeEEE----EeHHHHHHHHHHhcCCc-cEEeC
Q 024233 80 ----LDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRV----ISRMTLQQILAKAVGDE-IILNE 150 (270)
Q Consensus 80 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~l~~~L~~~~~~~-~i~~~ 150 (270)
+...+.+.+.+..... ...+....... ..+..+.... .....+.+.|.+.+... .++.+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~-------~~~g~~~~~~~-----gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~ 149 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDG-------DETGPLHLGKE-----GAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQ 149 (510)
T ss_pred HHHHHHHHHHHHHcCCcccc-------CCCCceeeccC-----cCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEEC
Confidence 1111222222221110 00111000000 0000111011 12356777777765322 38889
Q ss_pred ceEEEEEecCCeEE-EEE--cCCc--EEeccEEEecCCCCchh
Q 024233 151 SNVIDFKDHGDKVS-VVL--ENGQ--CYAGDLLVGADGIWSKV 188 (270)
Q Consensus 151 ~~v~~i~~~~~~~~-v~~--~~g~--~~~ad~vI~AdG~~S~v 188 (270)
+.++++..+++.+. +.. .+++ .+.|+.||+|+|.++.+
T Consensus 150 ~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 150 EMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred eEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 99999987666544 332 2343 68999999999998864
No 123
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=3.6e-09 Score=96.59 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=34.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||||.|||++|+.+++.|.+|+|+||.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 5589999999999999999999999999999998643
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.07 E-value=2.5e-09 Score=96.76 Aligned_cols=111 Identities=22% Similarity=0.391 Sum_probs=75.5
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
...+||+||||||+|+++|..|++.|++|+|+|... .|. +. . .. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-----GG~----~~-~--------~~--~--------------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-----GGQ----VK-D--------TV--G--------------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CCc----cc-c--------Cc--C---------------
Confidence 456899999999999999999999999999997531 110 00 0 00 0
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEE
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 173 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 173 (270)
+..+. +.+ .....++.+.+.+.+ +.. ++.+++|+++..+++.+.+.+.+|..+
T Consensus 255 ~~~~~--------------------~~~---~~~~~~l~~~l~~~l~~~gv~-i~~~~~V~~I~~~~~~~~v~~~~g~~i 310 (515)
T TIGR03140 255 IENLI--------------------SVP---YTTGSQLAANLEEHIKQYPID-LMENQRAKKIETEDGLIVVTLESGEVL 310 (515)
T ss_pred ccccc--------------------ccC---CCCHHHHHHHHHHHHHHhCCe-EEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 00000 000 012334444444432 444 778899999988877788888888899
Q ss_pred eccEEEecCCCCc
Q 024233 174 AGDLLVGADGIWS 186 (270)
Q Consensus 174 ~ad~vI~AdG~~S 186 (270)
.+|.+|+|+|.+.
T Consensus 311 ~~d~lIlAtGa~~ 323 (515)
T TIGR03140 311 KAKSVIVATGARW 323 (515)
T ss_pred EeCEEEECCCCCc
Confidence 9999999999864
No 125
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=5e-09 Score=96.02 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=33.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.++||+|||||+|||++|+.++++|.+|+|+||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4569999999999999999999999999999998654
No 126
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.06 E-value=1.3e-08 Score=86.18 Aligned_cols=160 Identities=22% Similarity=0.275 Sum_probs=91.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHh------CCCcEEEEeccCccccCCCCcccceeechhHHHHH-HHcCcChHHHHHHhc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKR------KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAAL-EAIDLDVAEEVMRAG 90 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~------~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l-~~~~~~~~~~l~~~~ 90 (270)
..+||+||||||+||++|+.|.+ ..++|+|+|+.......+ .+ +-.+.|..++-| ..| .+ .+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lS--Gaviep~aldEL~P~w-----ke---~~ 143 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LS--GAVIEPGALDELLPDW-----KE---DG 143 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ec--ceeeccchhhhhCcch-----hh---cC
Confidence 35799999999999999999965 256899999996532221 01 123555443322 211 11 11
Q ss_pred cccC--ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCe-EE
Q 024233 91 CVTG--DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-VS 164 (270)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-~~ 164 (270)
.+.. .....+.. ..+.+.+..+...+....| -++++-..+.++|-+++ |.+ |..+..+.++..++++ |.
T Consensus 144 apl~t~vT~d~~~f-Lt~~~~i~vPv~~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvE-iyPg~aaSevly~edgsVk 218 (621)
T KOG2415|consen 144 APLNTPVTSDKFKF-LTGKGRISVPVPSPMDNHG---NYVVSLGQLVRWLGEKAEELGVE-IYPGFAASEVLYDEDGSVK 218 (621)
T ss_pred Ccccccccccceee-eccCceeecCCCcccccCC---cEEEEHHHHHHHHHHHHHhhCce-eccccchhheeEcCCCcEe
Confidence 1100 00000000 1222223333222222233 47899999999997764 544 5556666555554433 22
Q ss_pred -E---------------EEcCCcEEeccEEEecCCCCchhhcccc
Q 024233 165 -V---------------VLENGQCYAGDLLVGADGIWSKVRKNLF 193 (270)
Q Consensus 165 -v---------------~~~~g~~~~ad~vI~AdG~~S~vr~~~~ 193 (270)
+ +++.|-.+.|+.-|.|.|.+..+-+++.
T Consensus 219 GiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 219 GIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred eEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 2 2333457999999999999988888773
No 127
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=6.2e-09 Score=96.04 Aligned_cols=37 Identities=30% Similarity=0.480 Sum_probs=34.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||||+||+++|+.+++.|.+|+||||.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4689999999999999999999999999999998643
No 128
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=84.28 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=32.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~----g~~V~viE~~~~ 53 (270)
..+||+|||||..|+++|+.|.++ |++|+|+||+..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999763 799999999965
No 129
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.03 E-value=7.1e-09 Score=95.44 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG 57 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~ 57 (270)
..+||+|||||.|||++|+.+++.|.+|+|+||.+.....
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 4689999999999999999999999999999998654333
No 130
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.02 E-value=7.5e-09 Score=94.80 Aligned_cols=41 Identities=34% Similarity=0.570 Sum_probs=36.4
Q ss_pred CCCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 14 DSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 14 ~~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
|..+..+||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 34456789999999999999999999999999999998653
No 131
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.02 E-value=7.2e-09 Score=95.31 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~ 53 (270)
..+||+|||||+|||++|+.+++. |.+|+||||.+.
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 457999999999999999999998 999999999864
No 132
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=1.4e-08 Score=93.01 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=35.3
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+..+||+|||+|++|+++|+.++++|.+|+||||.+.
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~ 46 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV 46 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345678999999999999999999999999999999864
No 133
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=1.6e-08 Score=92.76 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=34.0
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+||+|||||+|||++|+.+++.|.+|+||||...
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 3568999999999999999999999999999999854
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.01 E-value=4.7e-09 Score=95.68 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=72.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
.+||+||||||+|+++|..|+++|++|+|||+... .| .+.... .+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----GG----~~~~~~--------------------------~i- 48 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----GG----QITITS--------------------------EV- 48 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----Cc----eEEecc--------------------------cc-
Confidence 48999999999999999999999999999998631 11 110000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
.+ ..+ . ..+....+.+.+.+.+ +.. + ..++|+++..+++.+.+.+.++ .+.+
T Consensus 49 --~~-~pg----------------~---~~~~~~~l~~~l~~~~~~~gv~-~-~~~~V~~i~~~~~~~~V~~~~g-~~~a 103 (555)
T TIGR03143 49 --VN-YPG----------------I---LNTTGPELMQEMRQQAQDFGVK-F-LQAEVLDVDFDGDIKTIKTARG-DYKT 103 (555)
T ss_pred --cc-CCC----------------C---cCCCHHHHHHHHHHHHHHcCCE-E-eccEEEEEEecCCEEEEEecCC-EEEE
Confidence 00 000 0 0123345555555443 333 4 3678988887766667777666 6899
Q ss_pred cEEEecCCCCchh
Q 024233 176 DLLVGADGIWSKV 188 (270)
Q Consensus 176 d~vI~AdG~~S~v 188 (270)
+.||+|+|.++..
T Consensus 104 ~~lVlATGa~p~~ 116 (555)
T TIGR03143 104 LAVLIATGASPRK 116 (555)
T ss_pred eEEEECCCCccCC
Confidence 9999999987643
No 135
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.00 E-value=1.1e-08 Score=94.22 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~ 55 (270)
..+||+|||||+|||++|+.+++.|.+|+|+||.....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~ 86 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 86 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence 35799999999999999999999999999999986543
No 136
>PRK09897 hypothetical protein; Provisional
Probab=99.00 E-value=3.1e-09 Score=95.55 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=33.7
Q ss_pred EEeCceEEEEEecCCeEEEEEcC-CcEEeccEEEecCCCC
Q 024233 147 ILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLVGADGIW 185 (270)
Q Consensus 147 i~~~~~v~~i~~~~~~~~v~~~~-g~~~~ad~vI~AdG~~ 185 (270)
++.+++|++++.+++++.+.+.+ +..+.||.||+|+|..
T Consensus 126 v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 126 VYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 67788999999988899988865 4689999999999963
No 137
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=1.9e-08 Score=92.21 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=33.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3579999999999999999999999999999998553
No 138
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.99 E-value=5.7e-09 Score=92.96 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 133 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 133 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
.+.+.|.+.++...|+++++|++|..+++++.+.+.+|+++.||.||.|.-....
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHH
Confidence 4445555555442499999999999988889888889999999999999876443
No 139
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.99 E-value=5.1e-09 Score=90.66 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=67.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC---CCCcc-cceeechhHHHHHHHcCcChHH-HHHHhccccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYR-GPIQIQSNALAALEAIDLDVAE-EVMRAGCVTG 94 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~---~g~~~-~~~~l~~~~~~~l~~~~~~~~~-~l~~~~~~~~ 94 (270)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..... ..... ....+...+...+... +++. ++...+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~--Gll~~em~~lgsl-- 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV--GLLKEEMRRLGSL-- 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC--CchHHHHHHhcch--
Confidence 59999999999999999999999999999987653211 11001 1123445555666666 5555 22222110
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCe--EEEEeHHHHHHHHHHhcCCc---cEEeCceEEEEE
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPV--TRVISRMTLQQILAKAVGDE---IILNESNVIDFK 157 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~L~~~~~~~---~i~~~~~v~~i~ 157 (270)
. +.. . ...+.|. ...++|..+.+.|.+++... .++ ..+|+++.
T Consensus 79 -~---~~a-a--------------d~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 79 -I---MEA-A--------------DAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -h---eec-c--------------cccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 0 000 0 0011111 14678998999999886432 244 55777774
No 140
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=1.8e-08 Score=92.63 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=33.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||||++||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 468999999999999999999999999999999864
No 141
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=82.26 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=88.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC------CcEEEEeccCccccCCCCccccee--echhHHHHHHHcCcChHHHHHHhc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG------FEVLVFEKDMSAIRGEGQYRGPIQ--IQSNALAALEAIDLDVAEEVMRAG 90 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g------~~V~viE~~~~~~~~~g~~~~~~~--l~~~~~~~l~~~~~~~~~~l~~~~ 90 (270)
.++|+|||||+.|.++||.|++++ +.|+|||......+.+|..++-+. -.+.-..-|..+...+.+.|.++.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 379999999999999999999987 789999999766666665443222 112111222222212222222221
Q ss_pred cc-cCccccccccCCCCceeEeec--------------CC-----cccccCCC-CeEEEEeHHHHHHHHHHhcCCc--c-
Q 024233 91 CV-TGDRINGLVDGISGSWYIKFD--------------TF-----TPAAEKGL-PVTRVISRMTLQQILAKAVGDE--I- 146 (270)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~-~~~~~i~~~~l~~~L~~~~~~~--~- 146 (270)
.- ..+..+ .-..+....+ +. ......|. .....+++..+++.+.+.+... +
T Consensus 90 dGvnnwgYR-----altTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~ 164 (380)
T KOG2852|consen 90 DGVNNWGYR-----ALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVK 164 (380)
T ss_pred cCcccccce-----eeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeE
Confidence 10 000000 0001111111 00 00111221 1236899999999998886321 2
Q ss_pred EEeCceEEEEEecCCeEE-EEEc----CCcEEeccEEEecCCCCch
Q 024233 147 ILNESNVIDFKDHGDKVS-VVLE----NGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 147 i~~~~~v~~i~~~~~~~~-v~~~----~g~~~~ad~vI~AdG~~S~ 187 (270)
+.+ -+|.++..+..++. +..+ ......++.+|++.|+|+.
T Consensus 165 lv~-Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 165 LVF-GKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEE-eeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 443 46777764333332 2222 1346789999999999985
No 142
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.98 E-value=6.1e-09 Score=89.40 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=39.4
Q ss_pred HHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCC
Q 024233 135 QQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADG 183 (270)
Q Consensus 135 ~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 183 (270)
-+++..+++.. |.++.+|..|..++++|+|++.+..+.++|++|++-=
T Consensus 212 a~Afa~ql~~~-I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 212 AEAFAKQLGTR-ILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HHHHHHHhhce-EEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 33444445555 9999999999999999999999966899999998864
No 143
>PLN02568 polyamine oxidase
Probab=98.98 E-value=1.9e-08 Score=90.97 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 131 RMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 131 ~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
-..|.+.|.+.+....|+++++|+.|..+++++.|++.+|++++||.||.|.-.
T Consensus 241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 241 YLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 345788888887644599999999999999999999999989999999999875
No 144
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=1.2e-08 Score=92.90 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=32.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||||.||+++|+.+ +.|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 457999999999999999999 89999999999854
No 145
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.97 E-value=5.1e-09 Score=85.51 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=102.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCc-----cccCCCCcccceeechhHHHHHHH-cCcCh------
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS-----AIRGEGQYRGPIQIQSNALAALEA-IDLDV------ 82 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~-----~~~~~g~~~~~~~l~~~~~~~l~~-~~~~~------ 82 (270)
...+|.+|||||++|++.|.+|.-+ +.+|.|+|+... ...++|..++++...|+++++-=. -|..+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4579999999999999999999876 899999999753 345667777788888888654111 01111
Q ss_pred -----------------------HHHHHHhccccCccccccccCCCCceeEeec-CCcccccCCCCeEEEEeHHHHHHHH
Q 024233 83 -----------------------AEEVMRAGCVTGDRINGLVDGISGSWYIKFD-TFTPAAEKGLPVTRVISRMTLQQIL 138 (270)
Q Consensus 83 -----------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~L 138 (270)
.+.|...+......-..+. ++..+.+.+ ..........|+..+++...+...+
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmi---eg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMI---EGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF 202 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeee---ccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence 1122221111000000000 000000000 0001112334555677777776666
Q ss_pred HHh---cCCccEEeCceEEEEEecCCe-----EEEEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 139 AKA---VGDEIILNESNVIDFKDHGDK-----VSVVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 139 ~~~---~~~~~i~~~~~v~~i~~~~~~-----~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
-+. ++.. +..+-++..+..+.+. ++|.-..++++++..+|-|.|..|.--..+
T Consensus 203 ~edF~~~gg~-i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 203 GEDFDFMGGR-IYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHHHhccc-ccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 554 3444 7778889888876553 445555678999999999999988655544
No 146
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.96 E-value=6.7e-09 Score=92.33 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=33.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+++||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 35899999999999999999999999999999975
No 147
>PLN02815 L-aspartate oxidase
Probab=98.96 E-value=9.5e-09 Score=93.94 Aligned_cols=37 Identities=38% Similarity=0.589 Sum_probs=33.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
...+||+|||+|.+||++|+.+++.| +|+|+||.+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 34689999999999999999999999 99999998653
No 148
>PRK14694 putative mercuric reductase; Provisional
Probab=98.96 E-value=1.9e-08 Score=90.07 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.4
Q ss_pred CCCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 14 DSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 14 ~~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
|.....+||+|||||++|+++|..|++.|.+|+|||+..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 445678999999999999999999999999999999863
No 149
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.95 E-value=2e-08 Score=91.67 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=34.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999998653
No 150
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.95 E-value=1.5e-08 Score=87.38 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=50.8
Q ss_pred eEEEEeHHHHHHHHHHhcCCc---cEEeCceEEEEEecCCe-EEEEEcC-----CcEEeccEEEecCCCCchhhc
Q 024233 125 VTRVISRMTLQQILAKAVGDE---IILNESNVIDFKDHGDK-VSVVLEN-----GQCYAGDLLVGADGIWSKVRK 190 (270)
Q Consensus 125 ~~~~i~~~~l~~~L~~~~~~~---~i~~~~~v~~i~~~~~~-~~v~~~~-----g~~~~ad~vI~AdG~~S~vr~ 190 (270)
.+..++-..|-+.|.+.+... .++++++|++|.+.+++ |.|...+ ..+++|++|++..|.+|-..-
T Consensus 174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 345677888888888775322 49999999999998776 8887642 358999999999999886433
No 151
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.5e-08 Score=92.04 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=33.2
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+..+||+|||+|+|||++|+.+++. .+|+|+||....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 4568999999999999999999987 899999998653
No 152
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.94 E-value=1.3e-08 Score=94.25 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
..+||+|||||.+||++|+.+++.|.+|+|+|+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999998653
No 153
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1e-08 Score=93.21 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=33.5
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.+..+||+|||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 4567899999999999999999974 9999999998653
No 154
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=2.5e-08 Score=91.46 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEG 59 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g 59 (270)
..+||+|||||++||++|+.+++. .+|+|+||.+.....++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~ 44 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTG 44 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCch
Confidence 457999999999999999999986 89999999865433333
No 155
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.93 E-value=2.7e-08 Score=87.00 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 132 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 132 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
+.|.+.|.+.+... |+.+++|+.|..+..++.+.+.+|+.+.||.||.+.=.
T Consensus 215 ~~l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 215 QSLIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 34455555556666 89999999999998888898999999999999988653
No 156
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=3.8e-08 Score=89.76 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=33.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+||+|||+|.+||++|+.+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999997
No 157
>PRK10262 thioredoxin reductase; Provisional
Probab=98.93 E-value=1.4e-08 Score=86.51 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=33.6
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
.....+||+||||||+|+++|..|+++|++|++||+.
T Consensus 2 ~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 2 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 3456789999999999999999999999999999965
No 158
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.90 E-value=4e-08 Score=87.90 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+..+||+|||||++|+++|+.|+++|.+|+|||+..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 356899999999999999999999999999999964
No 159
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.89 E-value=7.5e-08 Score=83.99 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred eEEEEeHHHHHHHHHHhcCCc-cEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCchhh
Q 024233 125 VTRVISRMTLQQILAKAVGDE-IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVR 189 (270)
Q Consensus 125 ~~~~i~~~~l~~~L~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr 189 (270)
.+..+++..+.+.|.+++... .++++++|++++.+++++.+.+.+|..++||.||+|+|.|+...
T Consensus 128 ~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 128 QGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQL 193 (381)
T ss_pred CCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccc
Confidence 345789999999998876433 38889999999988888889888888799999999999998643
No 160
>PRK08275 putative oxidoreductase; Provisional
Probab=98.89 E-value=3.7e-08 Score=89.91 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=32.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~ 53 (270)
..+||+|||||.|||++|+.++++ |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 458999999999999999999987 689999999865
No 161
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.88 E-value=5e-08 Score=87.50 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
..|||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3689999999999999999999999999999986
No 162
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.88 E-value=2.3e-08 Score=91.55 Aligned_cols=37 Identities=38% Similarity=0.656 Sum_probs=34.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999999653
No 163
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=5e-08 Score=87.28 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=32.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45899999999999999999999999999999874
No 164
>PLN02676 polyamine oxidase
Probab=98.87 E-value=7.8e-08 Score=86.29 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcC--------CccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 131 RMTLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 131 ~~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
-..|.+.|.+.+. ...|+++++|++|..++++|.|++.+|++++||.||.|......
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 4566667766541 12499999999999999999999999999999999999986443
No 165
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.87 E-value=3.1e-09 Score=68.61 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=28.3
Q ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 24 VAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 24 IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
|||||++||++|+.|+++|++|+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999753
No 166
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.86 E-value=3.8e-08 Score=90.44 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 22 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 22 V~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
|+|||+|+|||++|+.+++.|.+|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999986
No 167
>PLN02507 glutathione reductase
Probab=98.86 E-value=2.4e-08 Score=89.95 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.3
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
...|||+||||||+|+.+|..++++|.+|+|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 34689999999999999999999999999999973
No 168
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=3.1e-08 Score=88.68 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+||+|||||++|+.+|..|+++|.+|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35899999999999999999999999999999874
No 169
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.86 E-value=3e-08 Score=89.58 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=30.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||+|+|||++|+.++ |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 569999999875
No 170
>PRK12839 hypothetical protein; Provisional
Probab=98.86 E-value=2.1e-07 Score=85.08 Aligned_cols=38 Identities=39% Similarity=0.573 Sum_probs=34.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+..+||+|||+|++|+++|+.|++.|.+|+|||+....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34689999999999999999999999999999998653
No 171
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.85 E-value=4.7e-08 Score=89.16 Aligned_cols=37 Identities=38% Similarity=0.589 Sum_probs=34.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.++||+|||+|++|+++|+.|+++|.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998643
No 172
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.85 E-value=8.6e-08 Score=87.40 Aligned_cols=50 Identities=30% Similarity=0.464 Sum_probs=38.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceee
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQI 67 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l 67 (270)
+..+||+|||+| +|+++|+.+++.|.+|+||||.+..-+.+..+++.+++
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~ 63 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWL 63 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEec
Confidence 457999999999 89999999999999999999986543333333334443
No 173
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.85 E-value=5.5e-08 Score=88.00 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||+| +|+++|+.+++.|.+|+||||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999 999999999999999999999864
No 174
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=6.4e-08 Score=86.61 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=32.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
+++||+||||||+|+++|..++++|.+|+|+|++
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999975
No 175
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=1.1e-07 Score=87.29 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=34.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+.++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34689999999999999999999999999999998643
No 176
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.83 E-value=6.5e-08 Score=83.85 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=90.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccccee--ech-hHH-----HHHH---------------H
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ--IQS-NAL-----AALE---------------A 77 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~--l~~-~~~-----~~l~---------------~ 77 (270)
||+|||+|+|||++|+.|++. ++|+|+-|.+.....+-+..+++. +.+ .+. +-|. .
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999999765444433444443 222 111 1111 1
Q ss_pred cCcChHHHHHHhccccCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--c-cEEeCceEE
Q 024233 78 IDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--E-IILNESNVI 154 (270)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~-~i~~~~~v~ 154 (270)
-++...+.|.+.+...... ..+......+..-+.... -+..--.-..+.+.|.+++.. . .++.++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~-------~~g~~~lt~EggHS~rRI--lH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~ 158 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRD-------EDGRLHLTREGGHSRRRI--LHAADATGKEIMTALLKKVRNRPNITVLEGAEAL 158 (518)
T ss_pred hHHHHHHHHHHcCCCCcCC-------CCCceeeeeecccCCceE--EEecCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence 1122333333333321111 111111111110000000 000012356778888877643 2 488899999
Q ss_pred EEEecCC-eE---EEEEcCC--cEEeccEEEecCCCCchhhccc
Q 024233 155 DFKDHGD-KV---SVVLENG--QCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 155 ~i~~~~~-~~---~v~~~~g--~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
++..+++ .+ .+.-.++ ..+.++.||+|+|.-+.+-+.-
T Consensus 159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~T 202 (518)
T COG0029 159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYT 202 (518)
T ss_pred hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccccc
Confidence 9988877 43 2322322 5789999999999888666544
No 177
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.83 E-value=1.9e-08 Score=89.54 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 178
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.83 E-value=3.6e-08 Score=87.75 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
++||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 5899999999999999999999999999999863
No 179
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.82 E-value=1.4e-07 Score=92.69 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=35.3
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.+.++||+|||+|.+|+++|+.+++.|.+|+|+||.+..
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 345789999999999999999999999999999998653
No 180
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.82 E-value=1.7e-08 Score=90.36 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCC
Q 024233 133 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADG 183 (270)
Q Consensus 133 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 183 (270)
.|.+.|.+.+....|+.+++|++|+.+++++.+.+.+|+.+.||.||.|.-
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 444555555543239999999999999899999888888899999999984
No 181
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=7.8e-08 Score=86.27 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=31.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 50 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~ 50 (270)
..+||+|||||++|+++|+.|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999998
No 182
>PRK06116 glutathione reductase; Validated
Probab=98.82 E-value=7.1e-08 Score=86.02 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=32.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
..+||+||||||+|+++|+.|+++|++|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3589999999999999999999999999999986
No 183
>PRK06370 mercuric reductase; Validated
Probab=98.81 E-value=2e-08 Score=89.88 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.++||+||||||+|+++|+.|+++|++|+|||+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45899999999999999999999999999999873
No 184
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=3.6e-08 Score=88.25 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=31.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
.+||+|||||++|+++|..|+++|.+|+|||+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 589999999999999999999999999999986
No 185
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.80 E-value=1.6e-08 Score=80.03 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=31.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988753
No 186
>PTZ00058 glutathione reductase; Provisional
Probab=98.80 E-value=1.4e-08 Score=92.21 Aligned_cols=38 Identities=34% Similarity=0.505 Sum_probs=34.4
Q ss_pred CCCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 14 DSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 14 ~~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
++...+|||+|||||++|.++|..+++.|.+|+|||+.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 33446799999999999999999999999999999987
No 187
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.80 E-value=7e-08 Score=84.12 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|+|||||++|+.+|+.|+++|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3899999999999999999999999999998754
No 188
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.79 E-value=1.4e-07 Score=63.08 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=31.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|+|||||++|+-+|..|++.|.+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999999964
No 189
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.78 E-value=1.1e-07 Score=84.44 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=41.4
Q ss_pred HHHHHHHHHhc---CCccEEeCceEEEEEec--CCeEE-EEEc-CCcEEeccEEEecCCCCchhhccc
Q 024233 132 MTLQQILAKAV---GDEIILNESNVIDFKDH--GDKVS-VVLE-NGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 132 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~--~~~~~-v~~~-~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
..+.+.|.+.+ +.. ++++++|+++..+ ++.+. +... ++.++.|+.||+|+|..+..+..+
T Consensus 123 ~~l~~~L~~~a~~~Gv~-i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 123 KALTNALYSSAERLGVE-IRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHHcCCE-EEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45666666553 444 9999999999876 34443 3333 345899999999999887655433
No 190
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=2.7e-07 Score=88.75 Aligned_cols=37 Identities=38% Similarity=0.555 Sum_probs=34.2
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+||+|||||.+||++|+.+++.|.+|+|+||.+.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999864
No 191
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.77 E-value=1.5e-07 Score=84.12 Aligned_cols=32 Identities=41% Similarity=0.710 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
|||+|||||++|+++|+.|+++|.+|+|||+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999999999999999999999999999993
No 192
>PRK14727 putative mercuric reductase; Provisional
Probab=98.76 E-value=2.8e-08 Score=89.16 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+.++||+|||||++|+++|..|+++|.+|+|+|+..
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3457999999999999999999999999999999973
No 193
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.74 E-value=2.6e-07 Score=84.81 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHH----hCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAK----RKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La----~~g~~V~viE~~~~ 53 (270)
||+|||||+|||++|+.++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999865
No 194
>PRK13748 putative mercuric reductase; Provisional
Probab=98.72 E-value=4.8e-08 Score=89.51 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=32.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
..+||+|||||++|+++|..|+++|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3689999999999999999999999999999987
No 195
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.70 E-value=6.3e-08 Score=92.85 Aligned_cols=35 Identities=40% Similarity=0.462 Sum_probs=33.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..++|+|||||||||++|+.|+++|++|+|||+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 46899999999999999999999999999999985
No 196
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.68 E-value=1.7e-06 Score=73.99 Aligned_cols=63 Identities=30% Similarity=0.459 Sum_probs=50.8
Q ss_pred CeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEE-EEEcCCcEEeccEEEecCCCCchh
Q 024233 124 PVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKV 188 (270)
Q Consensus 124 ~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~S~v 188 (270)
|.+..+++..+.+.|.+.+ +.. ++.+++|+++..+++++. |.+.+| +++||.||+|+|+|+..
T Consensus 129 ~~~g~v~p~~l~~~l~~~~~~~g~~-~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 129 PDDAHVDPRALLKALEKALEKLGVE-IIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred CCCceEChHHHHHHHHHHHHHcCCE-EEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3346788999999998875 344 888999999998877765 555566 79999999999999864
No 197
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=2.1e-07 Score=84.26 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=36.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGE 58 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~ 58 (270)
..++||+|||||.|||.+|+.+++.|.+|+|+||.+.....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 456899999999999999999999999999999987654333
No 198
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.66 E-value=1.2e-07 Score=85.52 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 199
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.64 E-value=2.6e-07 Score=79.06 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhcc-ccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC-VTGDR 96 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~ 96 (270)
.+|+++||.||++|++|..|...+ .+++.|||.+......|.--.+-.++- ..|+.+ ..... ..+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~---~fl~Dl--------vt~~~P~s~~s 70 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV---SFLKDL--------VTLRDPTSPFS 70 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS----TTSSS--------STTT-TTSTTS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc---cccccc--------CcCcCCCCccc
Confidence 479999999999999999999886 899999999765444331000000100 011111 00000 00000
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHh---cCCccEEeCceEEEEEecCC----eEEEEEc-
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGD----KVSVVLE- 168 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~----~~~v~~~- 168 (270)
+..+... .++ +..+- ... .....|.++.+.|.-. +... ++++++|++|...++ .+.|.+.
T Consensus 71 flnYL~~-~~r-l~~f~----~~~-----~~~p~R~ef~dYl~Wva~~~~~~-v~~~~~V~~I~~~~~~~~~~~~V~~~~ 138 (341)
T PF13434_consen 71 FLNYLHE-HGR-LYEFY----NRG-----YFFPSRREFNDYLRWVAEQLDNQ-VRYGSEVTSIEPDDDGDEDLFRVTTRD 138 (341)
T ss_dssp HHHHHHH-TT--HHHHH----HH-------SS-BHHHHHHHHHHHHCCGTTT-EEESEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHH-cCC-hhhhh----hcC-----CCCCCHHHHHHHHHHHHHhCCCc-eEECCEEEEEEEecCCCccEEEEEEee
Confidence 1011100 000 00000 000 1234677777766554 4433 899999999998654 3777773
Q ss_pred ---CCcEEeccEEEecCCCCchhhccc
Q 024233 169 ---NGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 169 ---~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
+++++.|+.||+|.|....+...+
T Consensus 139 ~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 139 SDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp TTS-EEEEEESEEEE----EE---GGG
T ss_pred cCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 346899999999999665555444
No 200
>PLN02546 glutathione reductase
Probab=98.64 E-value=1.8e-07 Score=84.97 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 50 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~ 50 (270)
.+|||+|||||++|..+|..++++|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 201
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.63 E-value=4e-07 Score=79.85 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=31.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~~ 53 (270)
.+.+|+|||||++|+++|..|+++|. +|+|+++.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 34689999999999999999999987 7999998753
No 202
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.62 E-value=3.8e-08 Score=88.40 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=40.8
Q ss_pred HHHHHHHHHhc---CCccEEeCceEEEEEecCCe-EEEEEcCCcEEeccEEEecCCC
Q 024233 132 MTLQQILAKAV---GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 132 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
..|.++|.+.+ |.+ |+.+++|++|..++++ +++...+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~-I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGE-IRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCE-EECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 45555665553 444 9999999999988774 7788888878999999998887
No 203
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.62 E-value=7.2e-07 Score=77.71 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=72.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|+++|.+|+++|+.+... +. .++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------~~------~~~~~----------------- 184 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------AS------LMPPE----------------- 184 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------ch------hCCHH-----------------
Confidence 3589999999999999999999999999999875310 00 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
-...+.+.|. ..+.. ++.+++++++..+++.+.+.+.+|+++.+|.|
T Consensus 185 -------------------------------~~~~l~~~l~-~~gV~-i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 231 (377)
T PRK04965 185 -------------------------------VSSRLQHRLT-EMGVH-LLLKSQLQGLEKTDSGIRATLDSGRSIEVDAV 231 (377)
T ss_pred -------------------------------HHHHHHHHHH-hCCCE-EEECCeEEEEEccCCEEEEEEcCCcEEECCEE
Confidence 0122233332 23444 77889999998877778888899999999999
Q ss_pred EecCCCCch
Q 024233 179 VGADGIWSK 187 (270)
Q Consensus 179 I~AdG~~S~ 187 (270)
|.|.|..+.
T Consensus 232 I~a~G~~p~ 240 (377)
T PRK04965 232 IAAAGLRPN 240 (377)
T ss_pred EECcCCCcc
Confidence 999998653
No 204
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.61 E-value=5.2e-07 Score=79.59 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+..||++|||||++|..+|..+++.|.+|.++|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 356999999999999999999999999999999994
No 205
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.60 E-value=4.8e-07 Score=83.54 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
+|||+|||+|++|.++|..++++|.+|+|||+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 206
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.59 E-value=7.9e-07 Score=78.68 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+.+|+|||||.+|+.+|..|.+.+.+|+|||+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 345699999999999999999987789999999885
No 207
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.57 E-value=6.2e-07 Score=79.65 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~ 53 (270)
+|+|||||++|+.+|..|++. +.+|+|||+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 899999999999999999987 578999999863
No 208
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.56 E-value=5.9e-07 Score=74.62 Aligned_cols=40 Identities=23% Similarity=0.101 Sum_probs=35.7
Q ss_pred cEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCC
Q 024233 146 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIW 185 (270)
Q Consensus 146 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 185 (270)
.|+.++.|..|..-.+++.+.-.+|+..++|.||.|+-+.
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred eeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 3888899999999999999999999999999999997654
No 209
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=1.6e-06 Score=77.46 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|+|||||++|+++|..|++.|.+|+|||+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999974
No 210
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.55 E-value=2.9e-07 Score=82.68 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=31.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
+|||+|||||++|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999985
No 211
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.53 E-value=2.7e-06 Score=76.18 Aligned_cols=33 Identities=45% Similarity=0.673 Sum_probs=31.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.||+|||||++|+.+|..|+++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 489999999999999999999999999999874
No 212
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.53 E-value=2e-06 Score=70.90 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.|+|||+|.|||+++..+-..|-.|+++|+....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 7999999999999999999887779999998653
No 213
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.53 E-value=2.6e-07 Score=82.83 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~~ 51 (270)
..|||+|||||++|..+|..+++. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999997 9999999985
No 214
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=1.3e-07 Score=84.36 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=35.3
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 15 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 15 ~~~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....+++|||||||++|+++|.+|...|++|+|+|.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 345668999999999999999999999999999999864
No 215
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.50 E-value=2.2e-06 Score=75.13 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=69.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+...... ..+.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~--------~~~~---------------------------- 187 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN--------APPP---------------------------- 187 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh--------cCHH----------------------------
Confidence 3589999999999999999999999999999875311000 0000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
-...+.+.+. +.+.. ++.+++|+++.. ++.+.+.+.+|+++.||.|
T Consensus 188 -------------------------------~~~~l~~~l~-~~GV~-i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~V 233 (396)
T PRK09754 188 -------------------------------VQRYLLQRHQ-QAGVR-ILLNNAIEHVVD-GEKVELTLQSGETLQADVV 233 (396)
T ss_pred -------------------------------HHHHHHHHHH-HCCCE-EEeCCeeEEEEc-CCEEEEEECCCCEEECCEE
Confidence 0011122222 22444 788899999876 4567788889999999999
Q ss_pred EecCCCCch
Q 024233 179 VGADGIWSK 187 (270)
Q Consensus 179 I~AdG~~S~ 187 (270)
|.|.|....
T Consensus 234 v~a~G~~pn 242 (396)
T PRK09754 234 IYGIGISAN 242 (396)
T ss_pred EECCCCChh
Confidence 999998654
No 216
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.50 E-value=1.2e-06 Score=75.67 Aligned_cols=37 Identities=32% Similarity=0.576 Sum_probs=32.3
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
....+|+|||||+||+++|..|-++|. +|+|+|....
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 345689999999999999999998776 7999999864
No 217
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.50 E-value=2.4e-06 Score=76.44 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=74.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~---------------- 218 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------FLDDEI---------------- 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------cCCHHH----------------
Confidence 46899999999999999999999999999998752110 000000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|.+ .+.. ++.+++|++++.+++++.+.+.+|+++++|.|
T Consensus 219 --------------------------------~~~l~~~l~~-~gI~-v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 264 (461)
T PRK05249 219 --------------------------------SDALSYHLRD-SGVT-IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264 (461)
T ss_pred --------------------------------HHHHHHHHHH-cCCE-EEECCEEEEEEEeCCeEEEEECCCCEEEeCEE
Confidence 1122233322 2444 78899999998777778888888889999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|..+...
T Consensus 265 i~a~G~~p~~~ 275 (461)
T PRK05249 265 LYANGRTGNTD 275 (461)
T ss_pred EEeecCCcccc
Confidence 99999887654
No 218
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.49 E-value=1.7e-06 Score=77.06 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=29.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~ 53 (270)
+|+|||||++|+++|..|++.+ .+|+|||+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 7999999999999999999875 48999999863
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.48 E-value=4e-06 Score=74.09 Aligned_cols=103 Identities=27% Similarity=0.336 Sum_probs=76.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 96 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 96 (270)
..+.+++|||||+.|+=+|..+++.|.+|+|+|+.+.... ..++++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------~~D~ei-------------- 216 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------GEDPEI-------------- 216 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------cCCHHH--------------
Confidence 3567899999999999999999999999999999964211 010011
Q ss_pred ccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCc--EEe
Q 024233 97 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ--CYA 174 (270)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~--~~~ 174 (270)
...+.+.|.+ .+.. ++.+++++.++..++++.+.+++|+ +++
T Consensus 217 ----------------------------------~~~~~~~l~~-~gv~-i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ 260 (454)
T COG1249 217 ----------------------------------SKELTKQLEK-GGVK-ILLNTKVTAVEKKDDGVLVTLEDGEGGTIE 260 (454)
T ss_pred ----------------------------------HHHHHHHHHh-CCeE-EEccceEEEEEecCCeEEEEEecCCCCEEE
Confidence 1223333333 2333 8889999999988877888888876 799
Q ss_pred ccEEEecCCCCchhh
Q 024233 175 GDLLVGADGIWSKVR 189 (270)
Q Consensus 175 ad~vI~AdG~~S~vr 189 (270)
+|.|+.|.|+....-
T Consensus 261 ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 261 ADAVLVAIGRKPNTD 275 (454)
T ss_pred eeEEEEccCCccCCC
Confidence 999999999876554
No 220
>PRK07208 hypothetical protein; Provisional
Probab=98.48 E-value=1.6e-07 Score=84.39 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+...||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457999999999999999999999999999999864
No 221
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=9e-07 Score=76.89 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=80.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CC-cEEEEeccCccccCCCCcccceeechhH-HHHHHHcCcChHHHHHHhc-cccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRK--GF-EVLVFEKDMSAIRGEGQYRGPIQIQSNA-LAALEAIDLDVAEEVMRAG-CVTG 94 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~--g~-~V~viE~~~~~~~~~g~~~~~~~l~~~~-~~~l~~~~~~~~~~l~~~~-~~~~ 94 (270)
++|+|||||++|+.+|.+|.+. .- .|.|||+.+....+ +..+... ...+. + ...-+... ...+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G-------iaYs~~~p~~~lN-v----~a~~mS~~~pD~p 69 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG-------IAYSTEEPEHLLN-V----PAARMSAFAPDIP 69 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC-------ccCCCCCchhhhc-c----ccccccccCCCCc
Confidence 6899999999999999999885 22 39999999753222 2222111 01110 0 00000000 0000
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc-------CC-ccEEeCceEEEEEec--CCeEE
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-------GD-EIILNESNVIDFKDH--GDKVS 164 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~-------~~-~~i~~~~~v~~i~~~--~~~~~ 164 (270)
..+..++. .. ...... ....+........|..+-+.|.+.+ .. .+.....+.+++..+ ..++.
T Consensus 70 ~~F~~WL~---~~-~~~~~d---~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~ 142 (474)
T COG4529 70 QDFVRWLQ---KQ-LQRYRD---PEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYL 142 (474)
T ss_pred hHHHHHHH---hc-ccccCC---hhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEE
Confidence 00101111 00 000000 0001111113445666666665542 11 245566788888776 56678
Q ss_pred EEEcCCcEEeccEEEecCCCCchhhcc
Q 024233 165 VVLENGQCYAGDLLVGADGIWSKVRKN 191 (270)
Q Consensus 165 v~~~~g~~~~ad~vI~AdG~~S~vr~~ 191 (270)
+...+|....||.+|+|+|.--.....
T Consensus 143 ~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 143 VTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred EecCCCCeeeeeEEEEeccCCCCCcch
Confidence 888999999999999999976555554
No 222
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.45 E-value=2.5e-06 Score=74.33 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=29.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~ 53 (270)
.+|+|||||++|+++|..|.+.+ .+|+||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 58999999999999999998864 57999999863
No 223
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=3.6e-06 Score=75.36 Aligned_cols=101 Identities=26% Similarity=0.330 Sum_probs=72.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+++|+.+..... ++..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~~~~---------------- 215 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG--------------------EDKEI---------------- 215 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc--------------------CCHHH----------------
Confidence 468999999999999999999999999999997531100 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC---cEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~a 175 (270)
...+.+.|. ..+.. ++.+++|++++.+++++.+.+.++ +++.+
T Consensus 216 --------------------------------~~~l~~~l~-~~gV~-i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~ 261 (462)
T PRK06416 216 --------------------------------SKLAERALK-KRGIK-IKTGAKAKKVEQTDDGVTVTLEDGGKEETLEA 261 (462)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEe
Confidence 112222222 23444 888999999988777787777666 67999
Q ss_pred cEEEecCCCCchhh
Q 024233 176 DLLVGADGIWSKVR 189 (270)
Q Consensus 176 d~vI~AdG~~S~vr 189 (270)
|.||.|.|......
T Consensus 262 D~vi~a~G~~p~~~ 275 (462)
T PRK06416 262 DYVLVAVGRRPNTE 275 (462)
T ss_pred CEEEEeeCCccCCC
Confidence 99999999876543
No 224
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.44 E-value=2.3e-07 Score=82.41 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=33.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+.+||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 35899999999999999999999999999999985
No 225
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.6e-07 Score=80.88 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=32.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
++|+|+|||+|||++|+.|+++|++|+|+|+++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 47999999999999999999999999999999754
No 226
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.42 E-value=2.7e-07 Score=83.25 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=47.0
Q ss_pred HHHHHHHHHhc---CCccEEeCceEEEEEecCCeE-EEEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 132 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 132 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
..+.+.|.+.+ |.. |+.+++|++|..+++++ .|.+.+|++++||.||.|.|.+..+.+.+
T Consensus 229 ~~l~~~L~~~~~~~G~~-i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ-IRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCE-EEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 45666666654 444 99999999998776654 47778888899999999999998887755
No 227
>PRK07233 hypothetical protein; Provisional
Probab=98.42 E-value=2.7e-07 Score=81.71 Aligned_cols=53 Identities=25% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCc
Q 024233 133 TLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 186 (270)
Q Consensus 133 ~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S 186 (270)
.|.+.|.+.+ +. .|+.+++|++|+.+++++++...++++++||.||.|.....
T Consensus 199 ~l~~~l~~~l~~~g~-~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARGG-EIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcCc-eEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4555565554 33 49999999999988888776667778899999999998753
No 228
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.42 E-value=4.6e-07 Score=80.77 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHh--CCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKR--KGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~--~g~~V~viE~~~~~ 54 (270)
..+++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 456799999999999999999987 79999999999754
No 229
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.41 E-value=5.5e-06 Score=74.19 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=73.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+++|+.+... + .++ ..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------~-------~~~----~~~------------ 213 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------P-------GED----AEV------------ 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------C-------CCC----HHH------------
Confidence 4689999999999999999999999999999985210 0 000 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC--cEEecc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 176 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad 176 (270)
...+.+.|.+ .+.. ++.+++|+++..+++++.+.+.+| .++.+|
T Consensus 214 --------------------------------~~~~~~~l~~-~gi~-i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D 259 (461)
T TIGR01350 214 --------------------------------SKVVAKALKK-KGVK-ILTNTKVTAVEKNDDQVVYENKGGETETLTGE 259 (461)
T ss_pred --------------------------------HHHHHHHHHH-cCCE-EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeC
Confidence 0112222322 3444 888999999988778887777677 479999
Q ss_pred EEEecCCCCchhh
Q 024233 177 LLVGADGIWSKVR 189 (270)
Q Consensus 177 ~vI~AdG~~S~vr 189 (270)
.||.|.|..+...
T Consensus 260 ~vi~a~G~~p~~~ 272 (461)
T TIGR01350 260 KVLVAVGRKPNTE 272 (461)
T ss_pred EEEEecCCcccCC
Confidence 9999999887655
No 230
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=4.1e-07 Score=74.97 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+++||+|||||++|+++|+.|+++|.++.|+-+...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 468999999999999999999999999999998754
No 231
>PRK07846 mycothione reductase; Reviewed
Probab=98.41 E-value=4.4e-06 Score=74.53 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=71.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--------------------~~d~~~---------------- 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--------------------HLDDDI---------------- 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--------------------ccCHHH----------------
Confidence 46899999999999999999999999999999753110 000000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+..+.+.+ + .+.. ++.++++++++.+++++.+.+.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~l~-~-~~v~-i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~v 254 (451)
T PRK07846 210 --------------------------------SERFTELA-S-KRWD-VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVL 254 (451)
T ss_pred --------------------------------HHHHHHHH-h-cCeE-EEeCCEEEEEEEcCCEEEEEECCCcEeecCEE
Confidence 01111111 1 1223 77889999998777777788888889999999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|..+..
T Consensus 255 l~a~G~~pn~ 264 (451)
T PRK07846 255 LVATGRVPNG 264 (451)
T ss_pred EEEECCccCc
Confidence 9999987654
No 232
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.40 E-value=3.4e-07 Score=82.57 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.||+|||||++||++|..|+++|++|+|+|++..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999999654
No 233
>PLN02576 protoporphyrinogen oxidase
Probab=98.40 E-value=4.4e-07 Score=81.95 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~~~~ 53 (270)
..+||+|||||++||++|+.|+++ |++|+|+|+++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 446999999999999999999999 999999999864
No 234
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.40 E-value=5e-06 Score=71.64 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHHHHHHh---cCCccEEeCceEEEEEecCCe-EEEEEcCCcEEeccEEEecCCCCch
Q 024233 131 RMTLQQILAKA---VGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 131 ~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
-..+.+.+++. +|.+ ++++++|.+++..++. ..+.+++|+++.+|.||+|-|+.+.
T Consensus 172 l~~vvkni~~~l~~~G~e-i~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGE-IRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcE-EEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 34555566655 4555 9999999999998876 4588889999999999999997653
No 235
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.6e-05 Score=64.92 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=30.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC-------CcEEEEeccCccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG-------FEVLVFEKDMSAI 55 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g-------~~V~viE~~~~~~ 55 (270)
..+|+|||+|+.||++|+.+.+.+ .+|+|++-++.+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 459999999999999999988844 5799997776544
No 236
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.36 E-value=6.2e-07 Score=85.81 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=33.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+||||||||+++|+.|+++|++|+|||+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999854
No 237
>PLN02507 glutathione reductase
Probab=98.36 E-value=8.2e-06 Score=73.64 Aligned_cols=101 Identities=21% Similarity=0.345 Sum_probs=73.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+|+++.+..... +.+. +
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~---------~d~~-----------~---------------- 246 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG---------FDDE-----------M---------------- 246 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc---------cCHH-----------H----------------
Confidence 468999999999999999999999999999987531100 0000 0
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+..+.+.|. ..+.. ++.+++|++++.+++++.+.+.+|+++.+|.|
T Consensus 247 --------------------------------~~~l~~~l~-~~GI~-i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~v 292 (499)
T PLN02507 247 --------------------------------RAVVARNLE-GRGIN-LHPRTNLTQLTKTEGGIKVITDHGEEFVADVV 292 (499)
T ss_pred --------------------------------HHHHHHHHH-hCCCE-EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEE
Confidence 111222222 22344 88899999998777777788888889999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|......
T Consensus 293 l~a~G~~pn~~ 303 (499)
T PLN02507 293 LFATGRAPNTK 303 (499)
T ss_pred EEeecCCCCCC
Confidence 99999876653
No 238
>PRK06116 glutathione reductase; Validated
Probab=98.35 E-value=8.1e-06 Score=72.85 Aligned_cols=101 Identities=25% Similarity=0.322 Sum_probs=72.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+++++.+..... ++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------~~~~~---------------- 210 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG--------------------FDPDI---------------- 210 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc--------------------cCHHH----------------
Confidence 468999999999999999999999999999987531100 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCe-EEEEEcCCcEEeccE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDL 177 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~ 177 (270)
+..+.+.|. ..+.. ++.+++|++++.++++ +.+.+.+|+++.+|.
T Consensus 211 --------------------------------~~~l~~~L~-~~GV~-i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~ 256 (450)
T PRK06116 211 --------------------------------RETLVEEME-KKGIR-LHTNAVPKAVEKNADGSLTLTLEDGETLTVDC 256 (450)
T ss_pred --------------------------------HHHHHHHHH-HCCcE-EECCCEEEEEEEcCCceEEEEEcCCcEEEeCE
Confidence 112222222 22344 8889999999876555 778888888999999
Q ss_pred EEecCCCCchhh
Q 024233 178 LVGADGIWSKVR 189 (270)
Q Consensus 178 vI~AdG~~S~vr 189 (270)
||.|.|......
T Consensus 257 Vv~a~G~~p~~~ 268 (450)
T PRK06116 257 LIWAIGREPNTD 268 (450)
T ss_pred EEEeeCCCcCCC
Confidence 999999876554
No 239
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=3.6e-06 Score=73.77 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEG 59 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g 59 (270)
.++||+|||||.+|.-+|+-.+-+|++|.++|+.+..++.++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 458999999999999999999999999999999976544443
No 240
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=1.1e-06 Score=77.30 Aligned_cols=147 Identities=19% Similarity=0.320 Sum_probs=82.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCccccee-e-chhHHHHHHHcCcChHHH-HHHhccccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-I-QSNALAALEAIDLDVAEE-VMRAGCVTGD 95 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~-l-~~~~~~~l~~~~~~~~~~-l~~~~~~~~~ 95 (270)
.+||+|||||-||+-+|++.||.|.++.++--+....+.-. +-.++. + .-...+-++.|| |+... ..+.+...+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms-CNPaIGG~~KG~lvrEIDALG-G~Mg~~~D~~~IQ~r- 80 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS-CNPAIGGPGKGHLVREIDALG-GLMGKAADKAGIQFR- 80 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecc-cccccCCcccceeEEeehhcc-chHHHhhhhcCCchh-
Confidence 48999999999999999999999999999987754211100 000000 0 000122344444 32222 222222111
Q ss_pred cccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC--ccEEeCceEEEEEecCC-eE-EEEEcCCc
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD-KV-SVVLENGQ 171 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~~-~v~~~~g~ 171 (270)
..+...+.- ...+ -...++....+.+++.+.. +.-.....|+++..+++ .+ -|.+.+|.
T Consensus 81 ----~LN~sKGPA------------Vra~-RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~ 143 (621)
T COG0445 81 ----MLNSSKGPA------------VRAP-RAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP 143 (621)
T ss_pred ----hccCCCcch------------hcch-hhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC
Confidence 111111110 0001 0244566666666665532 22333567888777555 34 48889999
Q ss_pred EEeccEEEecCCCC
Q 024233 172 CYAGDLLVGADGIW 185 (270)
Q Consensus 172 ~~~ad~vI~AdG~~ 185 (270)
.+.|+.||+++|.+
T Consensus 144 ~~~a~aVVlTTGTF 157 (621)
T COG0445 144 EFHAKAVVLTTGTF 157 (621)
T ss_pred eeecCEEEEeeccc
Confidence 99999999999965
No 241
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.34 E-value=5.3e-07 Score=80.69 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCC
Q 024233 136 QILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIW 185 (270)
Q Consensus 136 ~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 185 (270)
+.|.+.++...|+.+++|+.|..+++++++++.+|++++||.||.|.-..
T Consensus 229 ~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 229 EEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 34444443223889999999999988999988888889999999998864
No 242
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.33 E-value=1e-05 Score=73.48 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=52.0
Q ss_pred EEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEE-EEEc---CC--cEEeccEEEecCCCCchhhccccCCCC
Q 024233 127 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLVGADGIWSKVRKNLFGPQE 197 (270)
Q Consensus 127 ~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~-v~~~---~g--~~~~ad~vI~AdG~~S~vr~~~~~~~~ 197 (270)
..+++..+...|.+.+ |.. ++.+++|+++..+++++. +.+. +| .+++|+.||.|+|.|+.-...+.+...
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~-i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 201 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGAR-IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI 201 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCE-EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC
Confidence 4688999988887764 444 888999999998777643 4432 34 379999999999999986555544333
Q ss_pred c
Q 024233 198 A 198 (270)
Q Consensus 198 ~ 198 (270)
+
T Consensus 202 ~ 202 (516)
T TIGR03377 202 R 202 (516)
T ss_pred c
Confidence 3
No 243
>PLN02268 probable polyamine oxidase
Probab=98.33 E-value=6.1e-07 Score=79.67 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=35.0
Q ss_pred EEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 147 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 147 i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
|+++++|++|..+++++.|++.+|+++.||.||.|.-.
T Consensus 213 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 213 IRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred eeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 89999999999998999999999988999999999854
No 244
>PLN02487 zeta-carotene desaturase
Probab=98.33 E-value=1.2e-06 Score=79.73 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=45.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCc---cc-----c----eeechhHHHHHHHcC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQY---RG-----P----IQIQSNALAALEAID 79 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~---~~-----~----~~l~~~~~~~l~~~~ 79 (270)
++++|+|||||++||++|+.|+++|++|+|+|+.+...+..+.. .+ + +...++..++++++|
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LG 147 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVG 147 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcC
Confidence 44699999999999999999999999999999987543222111 00 1 112466788888883
No 245
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.32 E-value=7e-07 Score=77.11 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+||+|||||++|+++|+.|++.|.+|+|+|+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6999999999999999999999999999999753
No 246
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.31 E-value=1.3e-05 Score=71.25 Aligned_cols=99 Identities=26% Similarity=0.318 Sum_probs=69.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+.+|..|++.|.+|+|+|+.+..... .+ ..+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~----~~~------------ 200 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR--------------------EE----PSV------------ 200 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC--------------------CC----HHH------------
Confidence 468999999999999999999999999999998531100 00 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+..+.+.| +..+.. ++.+++|+++..+++.+.+.. +++++.+|.|
T Consensus 201 --------------------------------~~~~~~~l-~~~GI~-i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~v 245 (438)
T PRK07251 201 --------------------------------AALAKQYM-EEDGIT-FLLNAHTTEVKNDGDQVLVVT-EDETYRFDAL 245 (438)
T ss_pred --------------------------------HHHHHHHH-HHcCCE-EEcCCEEEEEEecCCEEEEEE-CCeEEEcCEE
Confidence 01111222 223444 788899999987666666554 5668999999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|.....
T Consensus 246 iva~G~~p~~ 255 (438)
T PRK07251 246 LYATGRKPNT 255 (438)
T ss_pred EEeeCCCCCc
Confidence 9999987654
No 247
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.30 E-value=1.3e-05 Score=71.85 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=73.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+++|||||.+|+-+|..|++.|.+|+++++.+...... .+. .
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~---------d~~-----------~---------------- 220 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE---------DAD-----------A---------------- 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC---------CHH-----------H----------------
Confidence 3589999999999999999999999999999875311000 000 0
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.++++++++.+++++.+.+.+|+++.+|.|
T Consensus 221 --------------------------------~~~l~~~L~-~~gV~-i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~v 266 (466)
T PRK07845 221 --------------------------------AEVLEEVFA-RRGMT-VLKRSRAESVERTGDGVVVTLTDGRTVEGSHA 266 (466)
T ss_pred --------------------------------HHHHHHHHH-HCCcE-EEcCCEEEEEEEeCCEEEEEECCCcEEEecEE
Confidence 111222222 22444 78889999998777778888888889999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|......
T Consensus 267 l~a~G~~pn~~ 277 (466)
T PRK07845 267 LMAVGSVPNTA 277 (466)
T ss_pred EEeecCCcCCC
Confidence 99999876653
No 248
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.30 E-value=5.8e-07 Score=81.33 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=45.8
Q ss_pred HHHHHHHHHhc---CCccEEeCceEEEEEecCCe-EEEEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 132 MTLQQILAKAV---GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 132 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
..+.+.|.+.+ +.. ++.+++|++|..++++ +.|.+.+|++++||.||.|.+........+
T Consensus 219 ~~l~~al~~~~~~~G~~-i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE-LRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCE-EEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 45556665543 444 9999999999987766 467888888999999999999877665543
No 249
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=7.4e-07 Score=79.74 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=32.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
..+||+|||||++|+++|..|++.|.+|+|||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999999999999999999999994
No 250
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.30 E-value=1.4e-05 Score=71.26 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=72.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+++++.+.... .++ .++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d----~~~------------ 209 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR--------------------GFD----DDM------------ 209 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc--------------------ccC----HHH------------
Confidence 45899999999999999999999999999998743100 000 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+..+.+.|. ..+.. ++.+++|+++..+++++.+.+.+++++.+|.|
T Consensus 210 --------------------------------~~~l~~~l~-~~gV~-i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 210 --------------------------------RALLARNME-GRGIR-IHPQTSLTSITKTDDGLKVTLSHGEEIVADVV 255 (446)
T ss_pred --------------------------------HHHHHHHHH-HCCCE-EEeCCEEEEEEEcCCeEEEEEcCCcEeecCEE
Confidence 111222222 22444 78899999998777777777878889999999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|.....
T Consensus 256 iva~G~~pn~ 265 (446)
T TIGR01424 256 LFATGRSPNT 265 (446)
T ss_pred EEeeCCCcCC
Confidence 9999987654
No 251
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.29 E-value=1.3e-05 Score=71.44 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+..... +.+. +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---------~d~~-----------~---------------- 209 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---------FDSM-----------I---------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------cCHH-----------H----------------
Confidence 468999999999999999999999999999988532100 0000 0
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCe-EEEEEcCC-cEEecc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGD 176 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~~ad 176 (270)
+..+.+.|. ..+.. ++.+++|+++..++++ +.+.++++ +.+.+|
T Consensus 210 --------------------------------~~~~~~~l~-~~gI~-i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 210 --------------------------------SETITEEYE-KEGIN-VHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVD 255 (450)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEcCCEEEEEEEeCCceEEEEECCCcEEEEcC
Confidence 111222222 22344 7888899999875444 66777777 579999
Q ss_pred EEEecCCCCchhh
Q 024233 177 LLVGADGIWSKVR 189 (270)
Q Consensus 177 ~vI~AdG~~S~vr 189 (270)
.||.|.|......
T Consensus 256 ~vi~a~G~~pn~~ 268 (450)
T TIGR01421 256 ELIWAIGRKPNTK 268 (450)
T ss_pred EEEEeeCCCcCcc
Confidence 9999999876653
No 252
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.29 E-value=1.3e-05 Score=71.49 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=70.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+++|||||++|+-+|..|++.|.+|+++|+.+... ..++..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------~~~d~~~---------------- 212 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------RHLDEDI---------------- 212 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------cccCHHH----------------
Confidence 4689999999999999999999999999999874210 0000000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
+..+.+.+ + .+.. ++.+++|+++..+++++.+.+.+|+++.+|.|
T Consensus 213 --------------------------------~~~l~~~~-~-~gI~-i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~v 257 (452)
T TIGR03452 213 --------------------------------SDRFTEIA-K-KKWD-IRLGRNVTAVEQDGDGVTLTLDDGSTVTADVL 257 (452)
T ss_pred --------------------------------HHHHHHHH-h-cCCE-EEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEE
Confidence 01111111 1 1223 77889999998777778788888888999999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|.....
T Consensus 258 l~a~G~~pn~ 267 (452)
T TIGR03452 258 LVATGRVPNG 267 (452)
T ss_pred EEeeccCcCC
Confidence 9999976543
No 253
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=5.5e-06 Score=71.81 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~---g~~V~viE~~~~ 53 (270)
+|+|||||++|+.+|..|.++ +.+|+|||+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999754 679999998853
No 254
>PRK12831 putative oxidoreductase; Provisional
Probab=98.28 E-value=1.2e-06 Score=78.36 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+||+||||||+|+++|+.|+++|++|+|||+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4567999999999999999999999999999998753
No 255
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.26 E-value=1.2e-05 Score=76.36 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=69.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+... +. .++...
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------~~------~ld~~~----------------- 184 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------AK------QLDQTA----------------- 184 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------hh------hcCHHH-----------------
Confidence 579999999999999999999999999999875210 00 000000
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEE
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLV 179 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI 179 (270)
...+.+.| +..+.. ++.+++++++..++....+.+.+|+++.+|.||
T Consensus 185 -------------------------------~~~l~~~l-~~~GV~-v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi 231 (785)
T TIGR02374 185 -------------------------------GRLLQREL-EQKGLT-FLLEKDTVEIVGATKADRIRFKDGSSLEADLIV 231 (785)
T ss_pred -------------------------------HHHHHHHH-HHcCCE-EEeCCceEEEEcCCceEEEEECCCCEEEcCEEE
Confidence 11122222 223444 788888888876555556788899999999999
Q ss_pred ecCCCCch
Q 024233 180 GADGIWSK 187 (270)
Q Consensus 180 ~AdG~~S~ 187 (270)
.|.|....
T Consensus 232 ~a~G~~Pn 239 (785)
T TIGR02374 232 MAAGIRPN 239 (785)
T ss_pred ECCCCCcC
Confidence 99998643
No 256
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.26 E-value=2.1e-05 Score=70.59 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=70.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+...... .+ .+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------d~-----------~~---------------- 215 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE---------DA-----------EV---------------- 215 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc---------CH-----------HH----------------
Confidence 4689999999999999999999999999999874211000 00 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEc--CC--cEEe
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--NG--QCYA 174 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~--~g--~~~~ 174 (270)
+..+.+.|. ..+.. ++.+++|+++..+++.+.+.+. +| +++.
T Consensus 216 --------------------------------~~~l~~~l~-~~gV~-i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~ 261 (466)
T PRK07818 216 --------------------------------SKEIAKQYK-KLGVK-ILTGTKVESIDDNGSKVTVTVSKKDGKAQELE 261 (466)
T ss_pred --------------------------------HHHHHHHHH-HCCCE-EEECCEEEEEEEeCCeEEEEEEecCCCeEEEE
Confidence 111222222 23444 8889999999877666665554 56 3799
Q ss_pred ccEEEecCCCCchhh
Q 024233 175 GDLLVGADGIWSKVR 189 (270)
Q Consensus 175 ad~vI~AdG~~S~vr 189 (270)
+|.||.|.|......
T Consensus 262 ~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 262 ADKVLQAIGFAPRVE 276 (466)
T ss_pred eCEEEECcCcccCCC
Confidence 999999999876654
No 257
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.25 E-value=2.4e-06 Score=76.26 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=27.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|||+|||+|++|..+|.. ..|.+|+|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5899999999999988654 4699999999864
No 258
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.25 E-value=4.9e-06 Score=71.27 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=77.2
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCccccC-CCCcccceeechhHHHHHHHcCcChHHHHHHhcccc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 93 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~~~~~~-~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (270)
....+|+|||||-++.-++..|.+++. +|+++=|++..... .+... .-...|...+.+..+......++.+..-.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~-ne~f~P~~v~~f~~l~~~~R~~~l~~~~~- 265 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV-NEIFSPEYVDYFYSLPDEERRELLREQRH- 265 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH-HGGGSHHHHHHHHTS-HHHHHHHHHHTGG-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch-hhhcCchhhhhhhcCCHHHHHHHHHHhHh-
Confidence 345799999999999999999999875 79999998643211 11100 01356666677766643333333222110
Q ss_pred CccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHH---HHHHh-c-CC--ccEEeCceEEEEEecCC-eEEE
Q 024233 94 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQ---ILAKA-V-GD--EIILNESNVIDFKDHGD-KVSV 165 (270)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~L~~~-~-~~--~~i~~~~~v~~i~~~~~-~~~v 165 (270)
. . + ..++...+.+ .|.++ + +. ..++.+++|++++.+++ ++.+
T Consensus 266 ---~-------n-----------------y---~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 266 ---T-------N-----------------Y---GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp ---G-------T-----------------S---SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred ---h-------c-----------------C---CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 0 0 0 1233333322 23222 1 22 24888999999999884 8888
Q ss_pred EEcC-----CcEEeccEEEecCCCC
Q 024233 166 VLEN-----GQCYAGDLLVGADGIW 185 (270)
Q Consensus 166 ~~~~-----g~~~~ad~vI~AdG~~ 185 (270)
.+.+ ..++++|.||.|+|..
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 8875 2479999999999963
No 259
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.24 E-value=1.3e-06 Score=78.07 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=42.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCc--------ccc----eeechhHHHHHHHcC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQY--------RGP----IQIQSNALAALEAID 79 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~--------~~~----~~l~~~~~~~l~~~~ 79 (270)
+|+|||||++||++|+.|+++|++|+|+|+.+...+..... ..+ ....++..+++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg 71 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELN 71 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcC
Confidence 58999999999999999999999999999986432211110 011 112467788888884
No 260
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.24 E-value=1.6e-06 Score=82.10 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
...++|+||||||||+++|+.|++.|++|+|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35679999999999999999999999999999985
No 261
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.23 E-value=1.2e-06 Score=73.70 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~ 53 (270)
||++|||+|++|+.+|..|++.| .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999864
No 262
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=2.5e-05 Score=69.85 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=68.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+|+.+..... .+ .++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~--------------------~d----~e~------------ 213 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG--------------------ED----EDI------------ 213 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc--------------------cc----HHH------------
Confidence 458999999999999999999999999999987531000 00 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC-cEEeccE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDL 177 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~ad~ 177 (270)
+..+.+.|.+ .+.. ++.+++|+++..++..+.+...++ .++.+|.
T Consensus 214 --------------------------------~~~l~~~L~~-~GI~-i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~ 259 (458)
T PRK06912 214 --------------------------------AHILREKLEN-DGVK-IFTGAALKGLNSYKKQALFEYEGSIQEVNAEF 259 (458)
T ss_pred --------------------------------HHHHHHHHHH-CCCE-EEECCEEEEEEEcCCEEEEEECCceEEEEeCE
Confidence 1122222322 3444 888999999987666555543322 3699999
Q ss_pred EEecCCCCchhh
Q 024233 178 LVGADGIWSKVR 189 (270)
Q Consensus 178 vI~AdG~~S~vr 189 (270)
||.|.|..+...
T Consensus 260 vivA~G~~p~~~ 271 (458)
T PRK06912 260 VLVSVGRKPRVQ 271 (458)
T ss_pred EEEecCCccCCC
Confidence 999999887654
No 263
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.23 E-value=1.2e-06 Score=77.39 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=34.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||+|++||.+|..|++.|.+|+++|++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 569999999999999999999999999999999964
No 264
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=2.6e-05 Score=69.99 Aligned_cols=100 Identities=27% Similarity=0.277 Sum_probs=69.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+..... ..+ .+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~---------~d~-----------~~---------------- 217 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA---------ADK-----------DI---------------- 217 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc---------CCH-----------HH----------------
Confidence 368999999999999999999999999999998531100 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC----cEEe
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYA 174 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~ 174 (270)
+..+.+.|.+. .. ++.+++|+.++.+++++.+.+.++ +++.
T Consensus 218 --------------------------------~~~~~~~l~~~--v~-i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~ 262 (471)
T PRK06467 218 --------------------------------VKVFTKRIKKQ--FN-IMLETKVTAVEAKEDGIYVTMEGKKAPAEPQR 262 (471)
T ss_pred --------------------------------HHHHHHHHhhc--eE-EEcCCEEEEEEEcCCEEEEEEEeCCCcceEEE
Confidence 11122222222 23 677888999987777777665432 3699
Q ss_pred ccEEEecCCCCchhh
Q 024233 175 GDLLVGADGIWSKVR 189 (270)
Q Consensus 175 ad~vI~AdG~~S~vr 189 (270)
+|.||.|.|..+...
T Consensus 263 ~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 263 YDAVLVAVGRVPNGK 277 (471)
T ss_pred eCEEEEeecccccCC
Confidence 999999999887653
No 265
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.23 E-value=1.3e-06 Score=78.20 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=31.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
|||+||||||+|+++|..|+++|++|+|||+.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999874
No 266
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=2.6e-05 Score=69.96 Aligned_cols=100 Identities=27% Similarity=0.284 Sum_probs=68.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+|+.+..... +.+ .+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~---------~d~-----------~~---------------- 217 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG---------TDT-----------ET---------------- 217 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---------CCH-----------HH----------------
Confidence 468999999999999999999999999999987531100 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEc---C--CcEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---N--GQCY 173 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~---~--g~~~ 173 (270)
+..+.+.|.+ .+.. ++.+++|++++.+++++.+.+. + ++.+
T Consensus 218 --------------------------------~~~l~~~l~~-~gV~-i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i 263 (466)
T PRK06115 218 --------------------------------AKTLQKALTK-QGMK-FKLGSKVTGATAGADGVSLTLEPAAGGAAETL 263 (466)
T ss_pred --------------------------------HHHHHHHHHh-cCCE-EEECcEEEEEEEcCCeEEEEEEEcCCCceeEE
Confidence 1112222222 2344 8889999999876666665442 2 3579
Q ss_pred eccEEEecCCCCchh
Q 024233 174 AGDLLVGADGIWSKV 188 (270)
Q Consensus 174 ~ad~vI~AdG~~S~v 188 (270)
.+|.||.|.|..+..
T Consensus 264 ~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 264 QADYVLVAIGRRPYT 278 (466)
T ss_pred EeCEEEEccCCcccc
Confidence 999999999987654
No 267
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.22 E-value=2.3e-05 Score=70.23 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=69.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+..... .++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~---------------- 209 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR--------------------EEPEI---------------- 209 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc--------------------cCHHH----------------
Confidence 368999999999999999999999999999988531100 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEc---CCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---NGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~---~g~~~~a 175 (270)
+..+.+.|. ..+.. ++.+++|++++.+++.+.+.+. +++++.+
T Consensus 210 --------------------------------~~~l~~~l~-~~gV~-i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 255 (463)
T TIGR02053 210 --------------------------------SAAVEEALA-EEGIE-VVTSAQVKAVSVRGGGKIITVEKPGGQGEVEA 255 (463)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEcCcEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 112222222 23444 8888999999877666555543 2357999
Q ss_pred cEEEecCCCCchhh
Q 024233 176 DLLVGADGIWSKVR 189 (270)
Q Consensus 176 d~vI~AdG~~S~vr 189 (270)
|.||.|.|..+..-
T Consensus 256 D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 256 DELLVATGRRPNTD 269 (463)
T ss_pred CEEEEeECCCcCCC
Confidence 99999999876543
No 268
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.21 E-value=2.9e-06 Score=76.37 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=33.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~----g~~V~viE~~~~~~ 55 (270)
.+.+|+|||||++||++|+.|++. |.+|+|+|+.+...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 357999999999999999999995 68999999997543
No 269
>PRK07846 mycothione reductase; Reviewed
Probab=98.21 E-value=1.4e-05 Score=71.33 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=27.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+||++|||||++|..+|.. ..|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3799999999999988866 4599999999863
No 270
>PRK06370 mercuric reductase; Validated
Probab=98.20 E-value=3.3e-05 Score=69.26 Aligned_cols=101 Identities=27% Similarity=0.361 Sum_probs=69.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+..... .+..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~--------------------~~~~~---------------- 214 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR--------------------EDEDV---------------- 214 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc--------------------cCHHH----------------
Confidence 468999999999999999999999999999998531100 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEE--c-CCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVL--E-NGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~--~-~g~~~~a 175 (270)
+..+.+.| +..+.. ++.+++|+++..+++++.+.+ . ++.++.+
T Consensus 215 --------------------------------~~~l~~~l-~~~GV~-i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 260 (463)
T PRK06370 215 --------------------------------AAAVREIL-EREGID-VRLNAECIRVERDGDGIAVGLDCNGGAPEITG 260 (463)
T ss_pred --------------------------------HHHHHHHH-HhCCCE-EEeCCEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 11122222 223444 888999999987766655443 2 3457999
Q ss_pred cEEEecCCCCchhh
Q 024233 176 DLLVGADGIWSKVR 189 (270)
Q Consensus 176 d~vI~AdG~~S~vr 189 (270)
|.||.|.|......
T Consensus 261 D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 261 SHILVAVGRVPNTD 274 (463)
T ss_pred CEEEECcCCCcCCC
Confidence 99999999876543
No 271
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.19 E-value=2.2e-05 Score=74.92 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=70.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccccc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 99 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 99 (270)
.+++|||||+.|+-+|..|++.|.+|+|+|+.+... +. .++...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------~~------~ld~~~----------------- 189 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------AE------QLDQMG----------------- 189 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------hh------hcCHHH-----------------
Confidence 579999999999999999999999999999875210 00 000000
Q ss_pred cccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecC--CeEEEEEcCCcEEeccE
Q 024233 100 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGDL 177 (270)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~ 177 (270)
...+.+.| +..+.. ++.++++++|..++ ....+.+.+|+.+.+|+
T Consensus 190 -------------------------------~~~l~~~L-~~~GV~-v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~ 236 (847)
T PRK14989 190 -------------------------------GEQLRRKI-ESMGVR-VHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236 (847)
T ss_pred -------------------------------HHHHHHHH-HHCCCE-EEcCCeEEEEEecCCCceEEEEECCCCEEEcCE
Confidence 11222222 233455 88889999997643 23557788999999999
Q ss_pred EEecCCCCchh
Q 024233 178 LVGADGIWSKV 188 (270)
Q Consensus 178 vI~AdG~~S~v 188 (270)
||.|.|.....
T Consensus 237 Vv~A~G~rPn~ 247 (847)
T PRK14989 237 IVFSTGIRPQD 247 (847)
T ss_pred EEECCCcccCc
Confidence 99999987553
No 272
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.19 E-value=1.8e-06 Score=82.48 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+||||||+|+++|+.|+++|++|+|||+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3457999999999999999999999999999999864
No 273
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.19 E-value=2.6e-06 Score=75.34 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=33.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAK-RKGFEVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La-~~g~~V~viE~~~~~~ 55 (270)
.+++|+||||||+|+.+|..|+ +.|++|+|||+.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4578999999999999999765 6799999999998654
No 274
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=2.9e-05 Score=69.84 Aligned_cols=101 Identities=23% Similarity=0.265 Sum_probs=70.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+..... ..+ .+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------~d~-----------~~---------------- 226 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA---------ADE-----------QV---------------- 226 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc---------CCH-----------HH----------------
Confidence 468999999999999999999999999999997531100 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcC--C--cEEe
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN--G--QCYA 174 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~ 174 (270)
...+.+.|. ..+.. ++.+++|+++..+++++.+.+.+ | +++.
T Consensus 227 --------------------------------~~~~~~~l~-~~gi~-i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~ 272 (475)
T PRK06327 227 --------------------------------AKEAAKAFT-KQGLD-IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE 272 (475)
T ss_pred --------------------------------HHHHHHHHH-HcCcE-EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEE
Confidence 011112222 12334 88899999998877777766554 3 4799
Q ss_pred ccEEEecCCCCchhh
Q 024233 175 GDLLVGADGIWSKVR 189 (270)
Q Consensus 175 ad~vI~AdG~~S~vr 189 (270)
+|.||.|.|..+...
T Consensus 273 ~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 273 VDKLIVSIGRVPNTD 287 (475)
T ss_pred cCEEEEccCCccCCC
Confidence 999999999876643
No 275
>PLN02612 phytoene desaturase
Probab=98.19 E-value=3.3e-06 Score=77.30 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=45.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCC--------cccc----eeechhHHHHHHHcC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--------YRGP----IQIQSNALAALEAID 79 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~--------~~~~----~~l~~~~~~~l~~~~ 79 (270)
.+++|+|||||++|+++|+.|+++|++|+|+|+.....+..+. ...+ ....++..++++++|
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG 165 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 165 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhC
Confidence 4579999999999999999999999999999998543222111 0011 113466788888884
No 276
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.17 E-value=2.5e-06 Score=74.85 Aligned_cols=34 Identities=44% Similarity=0.656 Sum_probs=32.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+||+|||||++|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 277
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=3.4e-05 Score=69.30 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=32.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999985
No 278
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.17 E-value=2.1e-06 Score=76.97 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+|+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 5899999999999999999999999999998654
No 279
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.17 E-value=3.1e-06 Score=75.47 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3568999999999999999999999999999999753
No 280
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.16 E-value=3.1e-06 Score=80.16 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=33.6
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+||||||+|+++|..|+++|++|+|||+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3567999999999999999999999999999999643
No 281
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.16 E-value=2.4e-06 Score=79.64 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=33.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+||||||+||++|+.|++.|++|+|||+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999999754
No 282
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.15 E-value=4.1e-05 Score=67.90 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=66.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+++++.+.... + .++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------~-------~~~~~~---------------- 181 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------K-------LFDEEM---------------- 181 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------c-------ccCHHH----------------
Confidence 35899999999999999999999999999998753100 0 000000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.+++|+++..++. + +.+.+|+++.+|.|
T Consensus 182 --------------------------------~~~~~~~l~-~~gV~-v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~v 225 (427)
T TIGR03385 182 --------------------------------NQIVEEELK-KHEIN-LRLNEEVDSIEGEER-V-KVFTSGGVYQADMV 225 (427)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEeCCEEEEEecCCC-E-EEEcCCCEEEeCEE
Confidence 111222222 23444 778889999876543 3 45677889999999
Q ss_pred EecCCCCch
Q 024233 179 VGADGIWSK 187 (270)
Q Consensus 179 I~AdG~~S~ 187 (270)
|.|.|....
T Consensus 226 i~a~G~~p~ 234 (427)
T TIGR03385 226 ILATGIKPN 234 (427)
T ss_pred EECCCccCC
Confidence 999998744
No 283
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.15 E-value=1.8e-05 Score=66.81 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=33.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+|||+||.|-.+|+..++.|++..++|++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 468999999999999999999999999999999853
No 284
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=2.3e-05 Score=74.74 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=30.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~----g~~V~viE~~~~ 53 (270)
+.+|+|||||++|+.+|..|.++ +++|+||++.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 35899999999999999999764 479999999864
No 285
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.15 E-value=3.2e-06 Score=75.78 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3557999999999999999999999999999999854
No 286
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.14 E-value=2.6e-06 Score=82.56 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+||||||+||++|+.|+++|++|+|||+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999999854
No 287
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.14 E-value=4.2e-05 Score=69.12 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=69.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+++|||||++|+-+|..|++.|.+|+|+++... ... +.+..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~---------~d~~~--------------------------- 224 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG---------FDRQC--------------------------- 224 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc---------CCHHH---------------------------
Confidence 35899999999999999999999999999986421 100 00000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.+++++.++..++.+.+.+.+|+++.+|.|
T Consensus 225 --------------------------------~~~l~~~l~-~~GV~-i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~v 270 (499)
T PTZ00052 225 --------------------------------SEKVVEYMK-EQGTL-FLEGVVPINIEKMDDKIKVLFSDGTTELFDTV 270 (499)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEcCCeEEEEEEcCCeEEEEECCCCEEEcCEE
Confidence 011222222 22334 77788888887766666777778888999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|..+...
T Consensus 271 l~a~G~~pn~~ 281 (499)
T PTZ00052 271 LYATGRKPDIK 281 (499)
T ss_pred EEeeCCCCCcc
Confidence 99999877654
No 288
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9e-06 Score=67.76 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVF 48 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~vi 48 (270)
...|||+||||||+|.++|++.+|.|++.-|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 45699999999999999999999999875444
No 289
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.13 E-value=1.2e-05 Score=69.58 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=32.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~ 53 (270)
.+.+|+|||||.+|+.+|..|.++. .+|++|||+..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 3468999999999999999999975 89999999963
No 290
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.12 E-value=3.1e-06 Score=73.27 Aligned_cols=38 Identities=37% Similarity=0.605 Sum_probs=34.5
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+...+++|||||++|+++|+.|++.|++|.++||.+..
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 34568999999999999999999999999999999753
No 291
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.12 E-value=3.9e-06 Score=75.06 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 4567999999999999999999999999999999864
No 292
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.11 E-value=4.6e-06 Score=72.64 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=31.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 5899999999999999999999999999999753
No 293
>PRK14727 putative mercuric reductase; Provisional
Probab=98.10 E-value=5.6e-05 Score=68.04 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=69.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+++... ... ..+ .+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-l~~---------~d~-----------~~---------------- 230 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-LFR---------EDP-----------LL---------------- 230 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC-CCc---------chH-----------HH----------------
Confidence 46899999999999999999999999999987521 000 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.+++|+++..+++++.+.+.++ ++.+|.|
T Consensus 231 --------------------------------~~~l~~~L~-~~GV~-i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~V 275 (479)
T PRK14727 231 --------------------------------GETLTACFE-KEGIE-VLNNTQASLVEHDDNGFVLTTGHG-ELRAEKL 275 (479)
T ss_pred --------------------------------HHHHHHHHH-hCCCE-EEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEE
Confidence 011222222 22344 778899999987777777766655 6999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|..+...
T Consensus 276 lvA~G~~pn~~ 286 (479)
T PRK14727 276 LISTGRHANTH 286 (479)
T ss_pred EEccCCCCCcc
Confidence 99999987654
No 294
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.09 E-value=4.2e-05 Score=68.06 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 3589999999999999999999999999999875
No 295
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.09 E-value=7.1e-05 Score=66.69 Aligned_cols=99 Identities=25% Similarity=0.283 Sum_probs=69.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+...... .+ .+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------~~-----------~~---------------- 201 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE---------DR-----------DI---------------- 201 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc---------CH-----------HH----------------
Confidence 3589999999999999999999999999999974211000 00 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.+++|+++..+++.+.+...++ ++.+|.|
T Consensus 202 --------------------------------~~~l~~~l~-~~gV~-v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~v 246 (441)
T PRK08010 202 --------------------------------ADNIATILR-DQGVD-IILNAHVERISHHENQVQVHSEHA-QLAVDAL 246 (441)
T ss_pred --------------------------------HHHHHHHHH-hCCCE-EEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEE
Confidence 011222222 22444 788899999987777777766555 5899999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|..+..
T Consensus 247 l~a~G~~pn~ 256 (441)
T PRK08010 247 LIASGRQPAT 256 (441)
T ss_pred EEeecCCcCC
Confidence 9999987754
No 296
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=4.7e-06 Score=68.65 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+|.+|||+|++|+.+|..|+++|.+|+|+||++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 69999999999999999999999999999999753
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.09 E-value=2.2e-05 Score=74.72 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCch
Q 024233 143 GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSK 187 (270)
Q Consensus 143 ~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~ 187 (270)
+.+ ++.+++|++|..+.. .|.+.+|.++.+|.||+|+|....
T Consensus 68 gv~-~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 68 GIT-LYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCE-EEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcC
Confidence 444 788999999976544 466778889999999999997653
No 298
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.09 E-value=6.5e-05 Score=67.61 Aligned_cols=101 Identities=26% Similarity=0.341 Sum_probs=68.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHh---CCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKR---KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 95 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~---~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 95 (270)
+.+|+|||||++|+-+|..++. .|.+|+|+|+.+..... +.+ .+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~---------~d~-----------~~------------- 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG---------FDS-----------TL------------- 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------cCH-----------HH-------------
Confidence 4689999999999999977654 49999999988531100 000 00
Q ss_pred cccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCe-EEEEEcCCcEEe
Q 024233 96 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYA 174 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~ 174 (270)
+..+.+.|. ..+.. ++.+++++++..++++ ..+.+.+++++.
T Consensus 234 -----------------------------------~~~l~~~L~-~~GI~-i~~~~~v~~i~~~~~~~~~v~~~~g~~i~ 276 (486)
T TIGR01423 234 -----------------------------------RKELTKQLR-ANGIN-IMTNENPAKVTLNADGSKHVTFESGKTLD 276 (486)
T ss_pred -----------------------------------HHHHHHHHH-HcCCE-EEcCCEEEEEEEcCCceEEEEEcCCCEEE
Confidence 112222222 22334 7888899999865444 567777788899
Q ss_pred ccEEEecCCCCchhh
Q 024233 175 GDLLVGADGIWSKVR 189 (270)
Q Consensus 175 ad~vI~AdG~~S~vr 189 (270)
+|.||.|.|......
T Consensus 277 ~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 277 VDVVMMAIGRVPRTQ 291 (486)
T ss_pred cCEEEEeeCCCcCcc
Confidence 999999999876553
No 299
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.09 E-value=5.2e-06 Score=77.29 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457999999999999999999999999999999864
No 300
>PRK14694 putative mercuric reductase; Provisional
Probab=98.09 E-value=5.9e-05 Score=67.69 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=68.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+++++..... . ..+ .+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-~---------~~~-----------~~---------------- 220 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-Q---------EDP-----------AV---------------- 220 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-C---------CCH-----------HH----------------
Confidence 4689999999999999999999999999998642100 0 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. +.+.. ++.+++++++..+++.+.+.+.++ ++.+|.|
T Consensus 221 --------------------------------~~~l~~~l~-~~GI~-v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 265 (468)
T PRK14694 221 --------------------------------GEAIEAAFR-REGIE-VLKQTQASEVDYNGREFILETNAG-TLRAEQL 265 (468)
T ss_pred --------------------------------HHHHHHHHH-hCCCE-EEeCCEEEEEEEcCCEEEEEECCC-EEEeCEE
Confidence 011222222 22344 777889999987766666665544 7999999
Q ss_pred EecCCCCchhh
Q 024233 179 VGADGIWSKVR 189 (270)
Q Consensus 179 I~AdG~~S~vr 189 (270)
|.|.|..+...
T Consensus 266 i~a~G~~pn~~ 276 (468)
T PRK14694 266 LVATGRTPNTE 276 (468)
T ss_pred EEccCCCCCcC
Confidence 99999877653
No 301
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.08 E-value=4.8e-06 Score=80.97 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+||+||||||+||++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 358999999999999999999999999999999864
No 302
>PLN02529 lysine-specific histone demethylase 1
Probab=98.06 E-value=7.7e-06 Score=76.29 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...++|+|||||++|+++|..|+++|++|+|+|++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 3567999999999999999999999999999999853
No 303
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.05 E-value=8.7e-05 Score=66.14 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 3689999999999999999999999999998874
No 304
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.05 E-value=8.1e-05 Score=67.01 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=67.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+++|||||++|+-+|..|++.|.+|+|+++. ..... +.+ .+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~---------~d~-----------~~---------------- 222 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG---------FDQ-----------DC---------------- 222 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc---------cCH-----------HH----------------
Confidence 357999999999999999999999999999874 21100 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCC---cEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~a 175 (270)
+..+.+.|. ..+.. ++.++.++++...++.+.+.+.++ +++.+
T Consensus 223 --------------------------------~~~l~~~L~-~~gV~-i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~ 268 (484)
T TIGR01438 223 --------------------------------ANKVGEHME-EHGVK-FKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEY 268 (484)
T ss_pred --------------------------------HHHHHHHHH-HcCCE-EEeCceEEEEEEcCCeEEEEEecCCcceEEEe
Confidence 112222222 22444 777888888877666666666655 37999
Q ss_pred cEEEecCCCCchh
Q 024233 176 DLLVGADGIWSKV 188 (270)
Q Consensus 176 d~vI~AdG~~S~v 188 (270)
|.||.|.|.....
T Consensus 269 D~vl~a~G~~pn~ 281 (484)
T TIGR01438 269 DTVLLAIGRDACT 281 (484)
T ss_pred CEEEEEecCCcCC
Confidence 9999999986554
No 305
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.04 E-value=6.6e-06 Score=77.23 Aligned_cols=37 Identities=32% Similarity=0.509 Sum_probs=33.9
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....+|+|||||++|+++|+.|++.|++|+|+|++..
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 3457999999999999999999999999999999864
No 306
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.04 E-value=6.7e-05 Score=67.20 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+.+|+|||||++|+-+|..|++.|.+|+++|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999885
No 307
>PRK02106 choline dehydrogenase; Validated
Probab=98.02 E-value=6.8e-06 Score=75.35 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHh-CCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKR-KGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~-~g~~V~viE~~~ 52 (270)
..+|++|||||++|+.+|..|++ .|++|+|||+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 799999999985
No 308
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.01 E-value=7.3e-06 Score=73.39 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=33.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+|+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999999999999999864
No 309
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.01 E-value=6.2e-06 Score=74.44 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+||+|||+||+|+.+|+.|+++|++|+|||+....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 69999999999999999999999999999998654
No 310
>PRK13748 putative mercuric reductase; Provisional
Probab=98.01 E-value=0.0001 Score=67.70 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=68.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||++|+-+|..|++.|.+|+|+++..... . ..+ .+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~---------~d~-----------~~---------------- 312 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-R---------EDP-----------AI---------------- 312 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-c---------cCH-----------HH----------------
Confidence 4689999999999999999999999999999752100 0 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEE
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 178 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~v 178 (270)
...+.+.|. ..+.. ++.+++|++++.+++.+.+.+.++ ++.+|.|
T Consensus 313 --------------------------------~~~l~~~l~-~~gI~-i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 357 (561)
T PRK13748 313 --------------------------------GEAVTAAFR-AEGIE-VLEHTQASQVAHVDGEFVLTTGHG-ELRADKL 357 (561)
T ss_pred --------------------------------HHHHHHHHH-HCCCE-EEcCCEEEEEEecCCEEEEEecCC-eEEeCEE
Confidence 011122221 22334 777889999887767666666555 6999999
Q ss_pred EecCCCCchh
Q 024233 179 VGADGIWSKV 188 (270)
Q Consensus 179 I~AdG~~S~v 188 (270)
|.|.|.....
T Consensus 358 i~a~G~~pn~ 367 (561)
T PRK13748 358 LVATGRAPNT 367 (561)
T ss_pred EEccCCCcCC
Confidence 9999987655
No 311
>PTZ00058 glutathione reductase; Provisional
Probab=97.99 E-value=0.00014 Score=66.37 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=67.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+..... +.+ .+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~---------~d~-----------~i---------------- 280 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK---------FDE-----------TI---------------- 280 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc---------CCH-----------HH----------------
Confidence 568999999999999999999999999999987521100 000 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCC-eEEEEEcCC-cEEecc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENG-QCYAGD 176 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~~~v~~~~g-~~~~ad 176 (270)
...+.+.|.+ .+.. ++.+++|+++..+++ ++.+.+.++ +++.+|
T Consensus 281 --------------------------------~~~l~~~L~~-~GV~-i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD 326 (561)
T PTZ00058 281 --------------------------------INELENDMKK-NNIN-IITHANVEEIEKVKEKNLTIYLSDGRKYEHFD 326 (561)
T ss_pred --------------------------------HHHHHHHHHH-CCCE-EEeCCEEEEEEecCCCcEEEEECCCCEEEECC
Confidence 1112222222 2344 778888888876543 455555444 579999
Q ss_pred EEEecCCCCchh
Q 024233 177 LLVGADGIWSKV 188 (270)
Q Consensus 177 ~vI~AdG~~S~v 188 (270)
.||.|.|.....
T Consensus 327 ~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 327 YVIYCVGRSPNT 338 (561)
T ss_pred EEEECcCCCCCc
Confidence 999999977553
No 312
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.98 E-value=9.1e-06 Score=75.59 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467999999999999999999999999999999864
No 313
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.9e-05 Score=58.53 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=74.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
...|+|||+||++-.+|++++++.++.+|||-.....-..| + +|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pG---------------------G---QL------------ 51 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPG---------------------G---QL------------ 51 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCC---------------------c---ee------------
Confidence 45899999999999999999999999999998743111111 0 00
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 175 (270)
.....+..+ .|+|. .+.-.+|.+.++++. +.. |. .-.|.++..+..-+.+.+ +.+.+.|
T Consensus 52 -----tTTT~veNf--------PGFPd--gi~G~~l~d~mrkqs~r~Gt~-i~-tEtVskv~~sskpF~l~t-d~~~v~~ 113 (322)
T KOG0404|consen 52 -----TTTTDVENF--------PGFPD--GITGPELMDKMRKQSERFGTE-II-TETVSKVDLSSKPFKLWT-DARPVTA 113 (322)
T ss_pred -----eeeeccccC--------CCCCc--ccccHHHHHHHHHHHHhhcce-ee-eeehhhccccCCCeEEEe-cCCceee
Confidence 000011111 23442 456678888888874 333 33 345667766666666655 4557999
Q ss_pred cEEEecCCCCc
Q 024233 176 DLLVGADGIWS 186 (270)
Q Consensus 176 d~vI~AdG~~S 186 (270)
|-||.|+|+..
T Consensus 114 ~avI~atGAsA 124 (322)
T KOG0404|consen 114 DAVILATGASA 124 (322)
T ss_pred eeEEEecccce
Confidence 99999999743
No 314
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.95 E-value=0.00011 Score=64.50 Aligned_cols=99 Identities=24% Similarity=0.236 Sum_probs=68.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
..+++|||+|++|+.+|..|+++|++|+++|+.+....... . +..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------~-~~~--------------------------- 180 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-------D-PEV--------------------------- 180 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-------h-HHH---------------------------
Confidence 36999999999999999999999999999999964211100 0 000
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEE---EEEcCCcEEec
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVS---VVLENGQCYAG 175 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~---v~~~~g~~~~a 175 (270)
...+. .+.+..+.. ++.+.++..+....+... +...++..+.+
T Consensus 181 --------------------------------~~~~~-~~l~~~gi~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 181 --------------------------------AEELA-ELLEKYGVE-LLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred --------------------------------HHHHH-HHHHHCCcE-EEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 00111 112222333 777888888887766544 57778888999
Q ss_pred cEEEecCCCCc
Q 024233 176 DLLVGADGIWS 186 (270)
Q Consensus 176 d~vI~AdG~~S 186 (270)
|+++.+.|...
T Consensus 227 d~~~~~~g~~p 237 (415)
T COG0446 227 DLVIIGPGERP 237 (415)
T ss_pred eEEEEeecccc
Confidence 99999999766
No 315
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.93 E-value=0.00018 Score=66.84 Aligned_cols=35 Identities=31% Similarity=0.297 Sum_probs=32.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+.+|+|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 35899999999999999999999999999999853
No 316
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.90 E-value=1.4e-05 Score=68.39 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=31.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCc--EEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFE--VLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~--V~viE~~~~ 53 (270)
...+|+|||||++||++||+|++++-+ |+|+|.++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 456999999999999999999999876 566999864
No 317
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.90 E-value=0.00013 Score=66.22 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=31.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4589999999999999999999999999998764
No 318
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.90 E-value=2.1e-05 Score=70.82 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=33.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+|||||++|+++|..|+++|++|+|||+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 346999999999999999999999999999999864
No 319
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.90 E-value=2.1e-05 Score=72.24 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=33.6
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....+|+||||||+||++|+.|++.|++|+|+|+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3457999999999999999999999999999999854
No 320
>PLN02785 Protein HOTHEAD
Probab=97.89 E-value=1.8e-05 Score=72.61 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=32.7
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+|++|||||.+|+.+|..|++ +.+|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 456999999999999999999999 689999999863
No 321
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.89 E-value=2e-05 Score=68.00 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+|+|||||++|+.+|..|++.|++|++||+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 456999999999999999999999999999999864
No 322
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=70.69 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=33.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..+|+||||||+||++|..|++.|++|+++|+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 37999999999999999999999999999999864
No 323
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00054 Score=57.25 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=35.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc-CccccCC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD-MSAIRGE 58 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~-~~~~~~~ 58 (270)
...||.+|||||-.||++|-..+..|.+|.++|-- |.+.+.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~Gts 59 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTS 59 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCc
Confidence 45799999999999999999999999999999984 3443333
No 324
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.85 E-value=1.8e-05 Score=72.07 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=33.6
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..++|++|||+|.+|+.+|..|+..|++|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 456899999999999999999999999999999984
No 325
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=0.00013 Score=62.21 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=89.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCccccCCCCcccceeechhHH--HHHHHcCcChHHHHHHhcc-c
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNAL--AALEAIDLDVAEEVMRAGC-V 92 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~~~~~~g~~~~~~~l~~~~~--~~l~~~~~~~~~~l~~~~~-~ 92 (270)
+..+|++.||-||.-|++|+.|..++ .++..+||.+......|. .+....+ .+++.| ..-.. .
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-----llegstlQv~FlkDL--------VTl~~PT 69 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-----LLEGSTLQVPFLKDL--------VTLVDPT 69 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-----ccCCccccccchhhh--------ccccCCC
Confidence 45689999999999999999999986 689999999876665552 1111111 112211 11110 0
Q ss_pred cCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCC-ccEEeCceEEEEEec-CCe-EE--EEE
Q 024233 93 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDH-GDK-VS--VVL 167 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~i~~~~~v~~i~~~-~~~-~~--v~~ 167 (270)
.+..+..+.... + .+.++- ... ...+.|.+..+.+.=+++. ..++++.+|++|..- .+. .. +.+
T Consensus 70 s~ySFLNYL~~h-~-RLy~Fl--------~~e-~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t 138 (436)
T COG3486 70 SPYSFLNYLHEH-G-RLYEFL--------NYE-TFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVT 138 (436)
T ss_pred CchHHHHHHHHc-c-hHhhhh--------hhh-cccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEc
Confidence 111111111100 0 011110 001 2567788887776554432 248999999988432 222 33 556
Q ss_pred cCCcEEeccEEEecCCCCchhhccc
Q 024233 168 ENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 168 ~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
.++.+.+|+.||+..|....+-..+
T Consensus 139 ~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 139 ANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred CCCcEEEeeeEEEccCCCcCCChHH
Confidence 6777999999999999876665544
No 326
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=64.52 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+||+|||+|.+||.+|..|+.+|.+|+|+|+...
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 3468999999999999999999999999999999753
No 327
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=8e-05 Score=64.70 Aligned_cols=149 Identities=23% Similarity=0.311 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC-CCC-cccceeechhHHHHHHHcCcChHHHHHHhccccC
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQ-YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 94 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~-~g~-~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 94 (270)
...+||+|||||=||+-+|.+.+|.|.+.+++-.+-...+. +.. +.+++.-. .-++-.+.++ |+-..+........
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg-~LmrEVDALd-Gl~~rvcD~s~vq~ 103 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKG-HLMREVDALD-GLCSRVCDQSGVQY 103 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccc-eeeeeehhhc-chHhhhhhhhhhhH
Confidence 45689999999999999999999999999999887432111 000 00011100 0011122222 33333322221111
Q ss_pred ccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCc---cEEeCceEEEEEe-cCC---e-E-EE
Q 024233 95 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE---IILNESNVIDFKD-HGD---K-V-SV 165 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~---~i~~~~~v~~i~~-~~~---~-~-~v 165 (270)
+.+ +-..+ ..-++.. ..++|....+.+.+.+... .|+. ..|.++.. +++ . + -|
T Consensus 104 k~L----Nrs~G-----------PAVwg~R--AQiDR~lYkk~MQkei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV 165 (679)
T KOG2311|consen 104 KVL----NRSKG-----------PAVWGLR--AQIDRKLYKKNMQKEISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGV 165 (679)
T ss_pred HHh----hccCC-----------CcccChH--HhhhHHHHHHHHHHHhccCCcchhhh-hhhhheeeccCCCCceEEEEE
Confidence 111 00000 0011111 3567777777777765321 3554 45666543 222 1 2 36
Q ss_pred EEcCCcEEeccEEEecCCCC
Q 024233 166 VLENGQCYAGDLLVGADGIW 185 (270)
Q Consensus 166 ~~~~g~~~~ad~vI~AdG~~ 185 (270)
.+.+|..+.|+-||+.+|.+
T Consensus 166 ~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 166 VLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred EEecCcEeccceEEEeeccc
Confidence 78899999999999999953
No 328
>PLN02546 glutathione reductase
Probab=97.77 E-value=0.00049 Score=62.91 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 4689999999999999999999999999999874
No 329
>PRK13984 putative oxidoreductase; Provisional
Probab=97.76 E-value=4.1e-05 Score=70.90 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....+|+|||+|++|+++|..|+++|++|+|||+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3457999999999999999999999999999999864
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.75 E-value=0.00045 Score=61.23 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=30.4
Q ss_pred cCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCc
Q 024233 142 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 186 (270)
Q Consensus 142 ~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S 186 (270)
.+.+ ++.+++|+++.. +. +.+++|+++.+|.+|.|.|...
T Consensus 241 ~gV~-v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 241 LGVD-IRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CCCE-EEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCCC
Confidence 3444 777888888854 33 5577888999999999999654
No 331
>PLN03000 amine oxidase
Probab=97.73 E-value=4.8e-05 Score=71.76 Aligned_cols=50 Identities=32% Similarity=0.411 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 131 RMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 131 ~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
-..|.+.|.+.+ . |++++.|++|..+++++.|+..+ ++++||.||.|--.
T Consensus 380 ~~~LieaLa~~L--~-I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPl 429 (881)
T PLN03000 380 NGRLVQALAENV--P-ILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPL 429 (881)
T ss_pred HHHHHHHHHhhC--C-cccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCH
Confidence 345556666555 3 88999999999999999987654 58999999998853
No 332
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.72 E-value=2.9e-05 Score=70.79 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~ 52 (270)
|++|||||.+|+.+|..|++.| ++|+|||+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999985
No 333
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.71 E-value=0.0007 Score=56.77 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4589999999999999999999999999999864
No 334
>PLN02976 amine oxidase
Probab=97.67 E-value=6.3e-05 Score=73.88 Aligned_cols=36 Identities=36% Similarity=0.579 Sum_probs=33.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~ 727 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR 727 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence 347899999999999999999999999999999754
No 335
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=97.59 E-value=0.00038 Score=57.03 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=56.0
Q ss_pred eccEEEecCCCCchhhccccCCCCccccceEeEeeeecCCCcccccCceEEEeeCCceEEEEeCCCCeEEEEEEEeCC
Q 024233 174 AGDLLVGADGIWSKVRKNLFGPQEAIFSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFNKEP 251 (270)
Q Consensus 174 ~ad~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 251 (270)
.|.++|+|||..|.+|+++. ...+ .....+.|..-.....+.+.+.++++++...+.+|+++.+.+++.+-++.+
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~ 75 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGP 75 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCC
Confidence 37899999999999999986 2233 234445555433334555677889999999999999999998887776655
No 336
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.58 E-value=0.00077 Score=61.33 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=31.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.+.+|+|+++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 4689999999999999999999999999998874
No 337
>PRK10262 thioredoxin reductase; Provisional
Probab=97.58 E-value=0.001 Score=56.67 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999974
No 338
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00011 Score=62.19 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=33.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCC
Q 024233 20 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGE 58 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~ 58 (270)
..|.|||+||||+.+|.+|.++ +.+|.|+|+.|.+.+-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 3999999999999999999985 68999999998765443
No 339
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.52 E-value=0.00044 Score=60.06 Aligned_cols=49 Identities=29% Similarity=0.399 Sum_probs=35.7
Q ss_pred HHhcCCccEEeCceEEEEEecCCeEEEEEcCCc-EEeccEEEecCCCC-chhhccc
Q 024233 139 AKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLVGADGIW-SKVRKNL 192 (270)
Q Consensus 139 ~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~-~~~ad~vI~AdG~~-S~vr~~~ 192 (270)
++.++.+ ++.++.|++++.+ + +++.+|+ ++.++.+|=|.|.. |++-+.+
T Consensus 219 L~~~GV~-v~l~~~Vt~v~~~--~--v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 219 LEKLGVE-VLLGTPVTEVTPD--G--VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHCCCE-EEcCCceEEECCC--c--EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 3445666 8999999999664 3 5566666 59999999999985 4455543
No 340
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00013 Score=60.56 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...|-|||||.||+-+||+++++|++|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45789999999999999999999999999999864
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.42 E-value=0.00017 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=29.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.|+|||+|..|..+|..+++.|++|+++|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999854
No 342
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.42 E-value=0.00013 Score=60.25 Aligned_cols=36 Identities=39% Similarity=0.585 Sum_probs=31.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC-CC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~-g~-~V~viE~~~~ 53 (270)
..+.|+|||||-.|+++|..+.+. |. +|.|+|....
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 568999999999999999999876 54 7999998753
No 343
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00019 Score=68.28 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++|+|||+||+||++|-+|-|.|+.|+|+||...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 347999999999999999999999999999999864
No 344
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.33 E-value=0.002 Score=56.30 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=70.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 98 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 98 (270)
...|++||||..|+-+|..|...+.+|+++++.+.+..+. +++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l-------------------f~~~i---------------- 257 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL-------------------FGPSI---------------- 257 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh-------------------hhHHH----------------
Confidence 3579999999999999999999999999999986421110 00001
Q ss_pred ccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCe--EEEEEcCCcEEecc
Q 024233 99 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGD 176 (270)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad 176 (270)
++.+.+. .+.-+.. ++.++.+.++..+.++ ..|.+.+|+++.||
T Consensus 258 --------------------------------~~~~~~y-~e~kgVk-~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 258 --------------------------------GQFYEDY-YENKGVK-FYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred --------------------------------HHHHHHH-HHhcCeE-EEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1111111 1222334 7778888888876533 45889999999999
Q ss_pred EEEecCCCCch
Q 024233 177 LLVGADGIWSK 187 (270)
Q Consensus 177 ~vI~AdG~~S~ 187 (270)
+||.+.|+.+.
T Consensus 304 lvv~GiG~~p~ 314 (478)
T KOG1336|consen 304 LVVVGIGIKPN 314 (478)
T ss_pred eEEEeeccccc
Confidence 99999998643
No 345
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.31 E-value=0.0003 Score=53.42 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|+|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999984
No 346
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.30 E-value=0.00025 Score=61.35 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCccEEeCceEEEEEecCCeEE-EEEcCCcEEeccEEEecCCCCchhhccc
Q 024233 143 GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 143 ~~~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
|.. |+.+..|.+|..+++.+. |.+.||.+++++.||-=.+.|-+.-+.+
T Consensus 278 Gae-I~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 278 GAE-IFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cce-eeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 344 899999999999887755 8999999999999999889998876665
No 347
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.30 E-value=6.3e-05 Score=58.59 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCcEEEEeccCccccCC
Q 024233 20 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGE 58 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~--g~~V~viE~~~~~~~~~ 58 (270)
.||+|||+|-+||++||..+++ ..+|.|||.+-.+.+++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 5999999999999999999965 56899999996654433
No 348
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.26 E-value=0.0031 Score=54.46 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~-V~viE~~~ 52 (270)
...|+|||+|.+|+-+|..|++.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35899999999999999999999997 99999864
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.23 E-value=0.00041 Score=62.72 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEeccCcc
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 54 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~~~~~ 54 (270)
....||.+|||||-|||.+|..|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999986 6899999998654
No 350
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.23 E-value=0.0022 Score=54.62 Aligned_cols=100 Identities=27% Similarity=0.278 Sum_probs=70.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 97 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 97 (270)
.+.+.+|||||..||-++---.+.|-+|+++|-.+. .+ ..+..++
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~----i~--------------------~~mD~Ei----------- 254 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ----IG--------------------GVMDGEI----------- 254 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh----hc--------------------cccCHHH-----------
Confidence 467999999999999999999999999999998753 11 0110111
Q ss_pred cccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCC-eEEEEEcC---C--c
Q 024233 98 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--Q 171 (270)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~~~v~~~~---g--~ 171 (270)
...+++.|.. .+-. +..+++|+....+++ .+.+...+ + +
T Consensus 255 ---------------------------------sk~~qr~L~k-Qgik-F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~ 299 (506)
T KOG1335|consen 255 ---------------------------------SKAFQRVLQK-QGIK-FKLGTKVTSATRNGDGPVEIEVENAKTGKKE 299 (506)
T ss_pred ---------------------------------HHHHHHHHHh-cCce-eEeccEEEEeeccCCCceEEEEEecCCCcee
Confidence 1122222222 2333 888999999999887 56666543 2 4
Q ss_pred EEeccEEEecCCCCch
Q 024233 172 CYAGDLLVGADGIWSK 187 (270)
Q Consensus 172 ~~~ad~vI~AdG~~S~ 187 (270)
+++||.+.+|.|++.-
T Consensus 300 tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 300 TLECDVLLVSIGRRPF 315 (506)
T ss_pred EEEeeEEEEEccCccc
Confidence 7999999999997643
No 351
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.22 E-value=0.0052 Score=53.25 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.6
Q ss_pred CCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCc
Q 024233 143 GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWS 186 (270)
Q Consensus 143 ~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S 186 (270)
+.. ++.+++++++.. + .+.+.+|+++.+|.||.|.|...
T Consensus 205 gV~-v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 205 GIE-VHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred CCE-EEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 444 777888887743 2 45667888999999999999765
No 352
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.17 E-value=0.0048 Score=55.32 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=31.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999998 899999864
No 353
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.13 E-value=0.00068 Score=56.75 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=32.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999999964
No 354
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.13 E-value=0.0013 Score=59.73 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=30.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..++|+|||+|.+|+=+|..|++...+|.+.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 45799999999999999999999988999988874
No 355
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.10 E-value=0.00083 Score=50.48 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=29.4
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 22 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 22 V~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
|+|+|+|..|+..|+.|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999884
No 356
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.09 E-value=0.0072 Score=55.55 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999874
No 357
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.09 E-value=0.0018 Score=59.43 Aligned_cols=97 Identities=27% Similarity=0.312 Sum_probs=65.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccccCcccccc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 100 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (270)
..+|||||.-|+-+|..|...|.+++|++-.+.. +..+|...
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------MerQLD~~----------- 188 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------MERQLDRT----------- 188 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------HHHhhhhH-----------
Confidence 4799999999999999999999999999877531 11111100
Q ss_pred ccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhcCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEe
Q 024233 101 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVG 180 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 180 (270)
-.++.+...+..+.. ++.++..+.+...+.-..+.++||..+.||+||-
T Consensus 189 ------------------------------ag~lL~~~le~~Gi~-~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~ 237 (793)
T COG1251 189 ------------------------------AGRLLRRKLEDLGIK-VLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVM 237 (793)
T ss_pred ------------------------------HHHHHHHHHHhhcce-eecccchhhhhcCcceeeEeecCCCcccceeEEE
Confidence 112222233333444 5555555555554444568899999999999999
Q ss_pred cCCCCc
Q 024233 181 ADGIWS 186 (270)
Q Consensus 181 AdG~~S 186 (270)
|+|.+.
T Consensus 238 a~GIrP 243 (793)
T COG1251 238 AVGIRP 243 (793)
T ss_pred eccccc
Confidence 999864
No 358
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.04 E-value=0.00077 Score=57.10 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=31.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||+|..|.++|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 799999999999999999999999999999853
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.01 E-value=0.001 Score=56.38 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..|+|||+|..|...|..++.+|++|+++|+++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999863
No 360
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.001 Score=53.64 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=42.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCccccC-CC--CcccceeechhHHHHHHHcC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EG--QYRGPIQIQSNALAALEAID 79 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~~~~-~g--~~~~~~~l~~~~~~~l~~~~ 79 (270)
.+++|||+|-.|..+|..|++.|++|+++|+++..... .. .....+.........|++.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~ag 63 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAG 63 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcC
Confidence 37999999999999999999999999999999653222 11 11112334444556666663
No 361
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.98 E-value=0.0018 Score=57.97 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..++|+|||+|.+|+=+|..|++.+.+|+++.|..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 34689999999999999999999999999998863
No 362
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.0012 Score=59.58 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=31.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34589999999999999999999999999999764
No 363
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.95 E-value=0.0011 Score=58.51 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=29.0
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+..+||+|+|.|+.-+.+|..|++.|.+|+.+|+++-
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y 38 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY 38 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence 3579999999999999999999999999999999963
No 364
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.94 E-value=0.0015 Score=55.43 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||+|..|.++|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999999999999999999999999999975
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.93 E-value=0.00099 Score=51.94 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|.+|+.+|..||+.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 799999999999999999999999999999864
No 366
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.0015 Score=54.84 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|+|||+|..|..+|..|+++|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999999853
No 367
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.85 E-value=0.0017 Score=54.44 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|+|||+|..|..+|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999885
No 368
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.85 E-value=0.0031 Score=54.68 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=42.3
Q ss_pred EEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcCC-cEEeccEEEecCCCCc
Q 024233 128 VISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLVGADGIWS 186 (270)
Q Consensus 128 ~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~ad~vI~AdG~~S 186 (270)
.-.-..+.++|..++ +.. ++.+++|++| +++++.+.+.++ ..++||.||+|+|..|
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~-i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQ-FHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCE-EEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 345678888887775 444 9999999999 334567776543 4699999999999866
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.82 E-value=0.0016 Score=54.61 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|+|||+|..|..+|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3699999999999999999999999999999854
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.0016 Score=58.40 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=30.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|+|||.|++|+++|..|+++|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.77 E-value=0.0022 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|+|||+|..|..+|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999974
No 372
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.0027 Score=56.79 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|+|+|.+|+++|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999974
No 373
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.70 E-value=0.0024 Score=53.63 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999999853
No 374
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.69 E-value=0.0025 Score=53.24 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3799999999999999999999999999998854
No 375
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.64 E-value=0.028 Score=55.24 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
..+|+|||+|+.|+-+|..|++.|. .|+|+|+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 3689999999999999999999996 588998764
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.63 E-value=0.032 Score=50.24 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=28.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..+.+.|. +|++++..+
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4689999999999999999999986 688766553
No 377
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.60 E-value=0.041 Score=51.63 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=30.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|.+.|. +|+|+++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999997 699998874
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.60 E-value=0.0041 Score=47.09 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
-...+|+|||||-+|...|..|.+.|.+|+|+.+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34578999999999999999999999999999543
No 379
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.58 E-value=0.0038 Score=46.03 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=33.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCccccCCC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSAIRGEG 59 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~~~~~g 59 (270)
+.+|+|||+|-.|+.+|..|++.|. +++|+|.+.......+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~ 43 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLN 43 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccc
Confidence 4689999999999999999999999 7999999875444433
No 380
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.57 E-value=0.0037 Score=49.41 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
...+|+|||+|-.|+.+|..|++.|+ +++|+|.+..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 45789999999999999999999999 6999999843
No 381
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.54 E-value=0.0035 Score=52.92 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=29.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEK 50 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~ 50 (270)
+|+|||+|..|+++|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 382
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.53 E-value=0.0031 Score=44.14 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=31.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
....|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4579999999999999999999999999999887
No 383
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.52 E-value=0.0036 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999863
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.52 E-value=0.0037 Score=52.71 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|+|||+|..|.++|..|++.|++|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999863
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.49 E-value=0.0043 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34699999999999999999999999999998763
No 386
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.45 E-value=0.0055 Score=47.02 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=30.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999985
No 387
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.44 E-value=0.0041 Score=54.91 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999999864
No 388
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.40 E-value=0.0049 Score=51.86 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999999853
No 389
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.40 E-value=0.0062 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
....|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999865
No 390
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.32 E-value=0.006 Score=51.64 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=30.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~~ 53 (270)
+|.|||+|.+|+++|+.|+++|. +|+++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999999753
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.0049 Score=52.87 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=31.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|.+||..|..|++.|++|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 789999999999999999999999999999864
No 392
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.0062 Score=51.64 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|.|||+|..|.++|..|++.|++|+++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999875
No 393
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.30 E-value=0.0067 Score=49.99 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCccccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSAIRG 57 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~~~~ 57 (270)
....|+|||.|-+|+.+|..|++.|+ +++|+|.+......
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 45689999999999999999999996 89999998654333
No 394
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.28 E-value=0.0088 Score=50.78 Aligned_cols=37 Identities=19% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 16 ENKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 16 ~~~~~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
.....+|+|||+|-+|.++|+.|+..|+ ++.|+|.+.
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3455699999999999999999999998 799999864
No 395
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.0065 Score=55.04 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999864
No 396
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.22 E-value=0.0086 Score=50.74 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=31.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|.|||+|..|.++|..|+++|++|++++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999975
No 397
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.20 E-value=0.011 Score=51.52 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=39.7
Q ss_pred ccccCCCCCCCCCCCcceEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 4 AVAESPTNNSDSENKKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 4 ~~~~~~~~~~~~~~~~~dV~IIGg-G~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+++++++.+.+.. .+++|+|.|| |.+|..++..|.++|++|+.++|..
T Consensus 7 ~~~~~~~~~~~~~-~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 7 TLAELEREPYWPS-EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred chhhcCCCCCCCC-CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 4566666666654 4468999999 9999999999999999999999853
No 398
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.19 E-value=0.0061 Score=55.10 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999864
No 399
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.19 E-value=0.0089 Score=51.11 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=30.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.|||+|..|.++|..|++.|++|++++|++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 79999999999999999999999999999974
No 400
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.18 E-value=0.012 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCc-EEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~-V~viE~~~ 52 (270)
...+|+|||+|-+|-+++..|+..|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999986 99999874
No 401
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.18 E-value=0.0073 Score=51.57 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=30.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.|||+|..|.++|..|++.|++|++++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999964
No 402
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.18 E-value=0.0081 Score=50.77 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
.+|.|||+|.+|+.+|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999999887 899999854
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.17 E-value=0.0077 Score=52.34 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=32.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|||+|.+|+.+|..|.+.|.+|+++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45689999999999999999999999999999974
No 404
>PRK04148 hypothetical protein; Provisional
Probab=96.14 E-value=0.0068 Score=44.27 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..++++||.| .|..+|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3589999999 999999999999999999999863
No 405
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.14 E-value=0.0082 Score=54.32 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=31.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 799999999999999999999999999999754
No 406
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.13 E-value=0.0094 Score=50.46 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
...+|+|||+|..|.++|..|++.|+ +|+++++++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 33589999999999999999999985 899999875
No 407
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.13 E-value=0.012 Score=50.10 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=31.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
..+|+|||+|-+|..+|+.|+..|+ +++|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3589999999999999999999997 8999998754
No 408
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.10 E-value=0.009 Score=42.57 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.8
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 22 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 22 V~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
|+|||.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999999963
No 409
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.09 E-value=0.013 Score=43.62 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=29.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 21 RILVAGG-GIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGg-G~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
+|.|||+ |-+|.++|+.|...++ ++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 7999999 9999999999999876 699999984
No 410
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.06 E-value=0.012 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=30.9
Q ss_pred CcceEEEEcCCH-HHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGGGI-GGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGgG~-aGl~~A~~La~~g~~V~viE~~ 51 (270)
..++|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457999999995 6999999999999999999987
No 411
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.06 E-value=0.0093 Score=45.48 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||-|..|..+|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4899999999999999999999999999998853
No 412
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.05 E-value=0.0076 Score=53.24 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=31.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999999854
No 413
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.01 E-value=0.028 Score=49.33 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=33.3
Q ss_pred cCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCC
Q 024233 142 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGI 184 (270)
Q Consensus 142 ~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 184 (270)
.+.+ +++++.|+.+..... ++.+.+|++++.+.+|+|+|.
T Consensus 140 ~gIe-~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 140 KGIE-LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred cCce-EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 4445 788999999976655 577889999999999999998
No 414
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.00 E-value=0.011 Score=50.77 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
...+|+|||+|-.|+.+|..|++.|. +++|+|++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35689999999999999999999998 8999999864
No 415
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.98 E-value=0.0083 Score=44.23 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.2
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 22 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 22 V~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
++|+|+|..+.++|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999865
No 416
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.97 E-value=0.011 Score=50.33 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.|||+|..|..+|..|++.|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999974
No 417
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.96 E-value=0.013 Score=46.83 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=32.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
...+|+|||+|-.|+.+|..|++.|. +++++|.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 35689999999999999999999999 5999999854
No 418
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.95 E-value=0.01 Score=53.42 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=32.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+|+|+|+|++|++++..+...|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999999864
No 419
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.013 Score=49.76 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=34.4
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+||+|.|-|+.=+.++..|+..|.+|+.||+++.
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~ 40 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDY 40 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCc
Confidence 3479999999999999999999999999999999964
No 420
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.92 E-value=0.0088 Score=56.54 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=32.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
..|+|||+|..|..+|+.++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999999864
No 421
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.92 E-value=0.013 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
+|+|||+|-.|+.+|..|++.|. +++++|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999999 5999999853
No 422
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.91 E-value=0.012 Score=49.45 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=31.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...|.|||||..|...|+.++..|++|+++|.++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 35899999999999999999998899999999953
No 423
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.90 E-value=0.041 Score=48.36 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=48.0
Q ss_pred EEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEE-EEEcCC--cEEeccEEEecCCCC-ch-hhccc
Q 024233 128 VISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLENG--QCYAGDLLVGADGIW-SK-VRKNL 192 (270)
Q Consensus 128 ~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~-v~~~~g--~~~~ad~vI~AdG~~-S~-vr~~~ 192 (270)
.+...+|.+.|.+.+ |.. ++.+++|+++..++++++ +.++++ ..++||.+|+|+|.| |. +.+.+
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~-il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGV-MLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCE-EEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 456677777777764 444 888999999998888776 444555 489999999999999 75 43433
No 424
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.89 E-value=0.0093 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=32.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
-..|+|||+|..|..+|+.++.+|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999999864
No 425
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.89 E-value=0.17 Score=46.82 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCC--ccEEeCceEEEEEec-CCeEE-EE---EcCCc--EEeccEEEecCCCCchh
Q 024233 131 RMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVS-VV---LENGQ--CYAGDLLVGADGIWSKV 188 (270)
Q Consensus 131 ~~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~~~-v~---~~~g~--~~~ad~vI~AdG~~S~v 188 (270)
-..|.+.|.+.+.. -.++.++.++++..+ ++.+. +. ..+|+ .+.|+-||+|+|..+.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35677777776422 138899999999875 45443 22 23554 68999999999998864
No 426
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.89 E-value=0.012 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhC----CCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~----g~~V~viE~~~~ 53 (270)
+.++=|||+|+|+|++|..|-|. |-+|+|+|+.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 35788999999999999999985 558999999864
No 427
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.88 E-value=0.016 Score=47.12 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=34.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCccccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSAIRG 57 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~~~~ 57 (270)
...+|+|||+|-.|+.+|..|++.|. +++++|.+......
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN 63 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSN 63 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccC
Confidence 35689999999999999999999998 79999998754433
No 428
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.87 E-value=0.013 Score=50.17 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=32.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
...+|+|||+|-.|+.+|..|++.|. +++|+|.+..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35689999999999999999999999 8999999854
No 429
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.87 E-value=0.13 Score=44.53 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=36.1
Q ss_pred cEEeCceEEEEEecCCe-EEEEEcC-----CcEEeccEEEecCCCCchhhccc
Q 024233 146 IILNESNVIDFKDHGDK-VSVVLEN-----GQCYAGDLLVGADGIWSKVRKNL 192 (270)
Q Consensus 146 ~i~~~~~v~~i~~~~~~-~~v~~~~-----g~~~~ad~vI~AdG~~S~vr~~~ 192 (270)
.++-+++|.+++..+++ +.+.+.. .++++.|.||.|+|.+-.+-..+
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 48889999999998877 6666543 25899999999999985544444
No 430
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.86 E-value=0.011 Score=46.82 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=32.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....|.|||||..|+-+|...+..|+.|.++|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346899999999999999999999999999999854
No 431
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.85 E-value=0.012 Score=49.05 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=30.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.|||.|..|.++|..|+++|++|+++|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999874
No 432
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.85 E-value=0.014 Score=51.15 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=32.1
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...|+|+|+|++|+.+|..|...|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 46899999999999999999999999999998853
No 433
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.85 E-value=0.013 Score=52.36 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+|+|||||.+|+-+|..|++.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999874
No 434
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.83 E-value=0.041 Score=47.65 Aligned_cols=93 Identities=27% Similarity=0.362 Sum_probs=0.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC----CCc-EEEEeccCccccCCCCcccceeechhHHHHHHHcCcChHHHHHHhccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK----GFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCV 92 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~----g~~-V~viE~~~~~~~~~g~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~ 92 (270)
....|.|||+|..|+-+|+.|++. |.+ ..||+.+- .+.+-|
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----------------------------nm~kiL------ 391 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----------------------------NMEKIL------ 391 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------------------------Chhhhh------
Q ss_pred cCccccccccCCCCceeEeecCCcccccCCCCeEEEEeHHHHHHHHHHhc---CCccEEeCceEEEEEecCCeEEEEEcC
Q 024233 93 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLEN 169 (270)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~~~v~~~~ 169 (270)
+..|-++-.+.. |.. ++.+..|.++......+.+.+.|
T Consensus 392 --------------------------------------Peyls~wt~ekir~~GV~-V~pna~v~sv~~~~~nl~lkL~d 432 (659)
T KOG1346|consen 392 --------------------------------------PEYLSQWTIEKIRKGGVD-VRPNAKVESVRKCCKNLVLKLSD 432 (659)
T ss_pred --------------------------------------HHHHHHHHHHHHHhcCce-eccchhhhhhhhhccceEEEecC
Q ss_pred CcEEeccEEEecCC
Q 024233 170 GQCYAGDLLVGADG 183 (270)
Q Consensus 170 g~~~~ad~vI~AdG 183 (270)
|.+++.|+||+|.|
T Consensus 433 G~~l~tD~vVvavG 446 (659)
T KOG1346|consen 433 GSELRTDLVVVAVG 446 (659)
T ss_pred CCeeeeeeEEEEec
No 435
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.83 E-value=0.015 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
.+.+|+|||.|-.|+.+|..|++.|. +++|+|.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 35799999999999999999999998 79999998653
No 436
>PRK12831 putative oxidoreductase; Provisional
Probab=95.81 E-value=0.014 Score=52.40 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34699999999999999999999999999999864
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.79 E-value=0.017 Score=45.81 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=33.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
.+.+|+|||.|-.|+.+|..|++.|. +++++|.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 45789999999999999999999998 8999999854
No 438
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.71 E-value=0.017 Score=48.83 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
.+|+|||+|.+|..+|+.|+..|+ +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 489999999999999999999876 999999864
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.70 E-value=0.012 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=32.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
-..|.|||+|..|..+|+.++.+|++|+++|.++.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 35799999999999999999999999999999864
No 440
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.67 E-value=0.026 Score=44.65 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=31.9
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
..+.|+|+|.|-.|..+|..|.+.|.+|+++|+++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44689999999999999999999999999998773
No 441
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.66 E-value=0.021 Score=48.37 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=30.4
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
..+|+|||+|-+|.++|+.|+..|. ++.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3589999999999999999999887 699999864
No 442
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.66 E-value=0.017 Score=50.04 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~~ 53 (270)
.+|+|||+|-+|..+|..|+++| .+|+|.+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 48999999999999999999999 79999999954
No 443
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.65 E-value=0.019 Score=46.39 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=33.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~~ 55 (270)
.+.+|+|||.|-.|+.+|..|++.|. +++|+|.+....
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 58 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVEL 58 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcC
Confidence 35699999999999999999999998 799999986543
No 444
>PRK08328 hypothetical protein; Provisional
Probab=95.62 E-value=0.02 Score=46.40 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.5
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
..+|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 4689999999999999999999998 79999988653
No 445
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.61 E-value=0.014 Score=51.17 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=39.3
Q ss_pred cCCccEEeCceEEEEEecCCeEEEEEcCCcEEeccEEEecCCCCchhh
Q 024233 142 VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLVGADGIWSKVR 189 (270)
Q Consensus 142 ~~~~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~S~vr 189 (270)
.+.. |+++++|++|+.+++++.+.+.+|++++||.||.|.......+
T Consensus 222 ~g~~-i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 222 LGGE-IRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HGGG-EESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred cCce-eecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 3444 9999999999999999999999999999999999998765554
No 446
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.59 E-value=0.022 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
+|+|||.|-.|+.+|..|++.|. +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999999 7999999864
No 447
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.56 E-value=0.021 Score=45.80 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.4
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIG-gG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.||| +|..|.++|..|++.|++|++++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998874
No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.55 E-value=0.021 Score=48.37 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=30.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~~ 53 (270)
+|+|||+|-+|.++|+.|+..|. +++++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 69999999999999999999994 7999999753
No 449
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.51 E-value=0.018 Score=48.64 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=29.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+|.|+|+|..|+..|+.|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 79999999999999999999998888887775
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.51 E-value=0.023 Score=47.87 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=32.5
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+|+|||.|.+|..+|..|++.|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999999999999999999985
No 451
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.50 E-value=0.024 Score=47.46 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
..+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999998 799999984
No 452
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.49 E-value=0.016 Score=54.86 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.8
Q ss_pred cceEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAK-RKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La-~~g~~V~viE~~~~ 53 (270)
-..|+|||+|..|..+|+.++ +.|++|+++|.++.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 357999999999999999999 88999999999853
No 453
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.45 E-value=0.017 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 488999999999999999999999999999853
No 454
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.45 E-value=0.018 Score=54.40 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.1
Q ss_pred ceEEEEcCCHHHHHHHHHHH-hCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAK-RKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La-~~g~~V~viE~~~~ 53 (270)
..|+|||+|..|..+|..++ +.|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 57999999999999999998 58999999999854
No 455
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.38 E-value=0.02 Score=48.26 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.7
Q ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEeccC
Q 024233 22 ILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 52 (270)
Q Consensus 22 V~IIGgG~aGl~~A~~La~~g~-~V~viE~~~ 52 (270)
|.|||+|-+|..+|+.|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999887 999999985
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.37 E-value=0.024 Score=49.64 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=29.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|..|+.+|..|+. |++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 59999999999999988885 999999999864
No 457
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.33 E-value=0.026 Score=42.67 Aligned_cols=35 Identities=34% Similarity=0.249 Sum_probs=28.7
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+.++|+|-|.+|..+|..|+..|.+|+|.|.+|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 46899999999999999999999999999999963
No 458
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.32 E-value=0.027 Score=49.30 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=32.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....|+|+|.|.+|..+|..|...|.+|+++|.++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 346899999999999999999999999999998864
No 459
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.26 E-value=0.025 Score=48.88 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=28.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~ 53 (270)
.|+|+|+||.||+++..+...|. +|+++|+++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 69999999999999888888896 6888888753
No 460
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.26 E-value=0.034 Score=47.35 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.8
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~ 52 (270)
..+|+|||+|-+|.++|+.|+..| .+++|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 458999999999999999999999 4899999975
No 461
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.25 E-value=0.031 Score=45.16 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.3
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
.+..|+|||.|-.|+.+|..|++.|. +++|+|.+...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 35689999999999999999999999 89999998643
No 462
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.24 E-value=0.063 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 29 IGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 29 ~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
++||++|+.|+++|++|+|||++..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r 25 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDR 25 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCC
Confidence 6899999999999999999999965
No 463
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.22 E-value=0.031 Score=44.04 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=33.1
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
.+..|+|||.|-.|+.+|..|++.|. +++++|.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 35689999999999999999999999 69999998653
No 464
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.22 E-value=0.034 Score=44.82 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=31.4
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCc---EEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFE---VLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~---V~viE~~~ 52 (270)
...+|+|+|+|-+|..+|..|.+.|.+ +.|+||+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 346899999999999999999999974 99999984
No 465
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.21 E-value=0.028 Score=50.44 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC--CcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g--~~V~viE~~~~ 53 (270)
.+|+|||.|-+|+.+|..|+++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 36999999999999999999885 78999998864
No 466
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.033 Score=49.72 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=31.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999764
No 467
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.17 E-value=0.034 Score=43.86 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=33.0
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
.+.+|+|||.|-.|+.+|..|++.|. +++++|.+...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve 55 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVS 55 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCC
Confidence 35799999999999999999999999 69999998643
No 468
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.02 Score=47.61 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=32.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+-+|+|||||.+|.-+|..+...|.+|+++|.+..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 45899999999999999999999999999999954
No 469
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.15 E-value=0.036 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=32.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
....|+|||.|-+|.++|..|+..|.+|++++|++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999975
No 470
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.11 E-value=0.041 Score=49.18 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=31.9
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...|+|+|.|-+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45899999999999999999999999999998653
No 471
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.11 E-value=0.037 Score=45.02 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCcceEEEEcCCHHHHHHHHHHHhCC-----------CcEEEEeccCccc
Q 024233 17 NKKLRILVAGGGIGGLVFALAAKRKG-----------FEVLVFEKDMSAI 55 (270)
Q Consensus 17 ~~~~dV~IIGgG~aGl~~A~~La~~g-----------~~V~viE~~~~~~ 55 (270)
.++.+|+|||+|-.|+.++..|++.| .+++|+|.+....
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~ 58 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSE 58 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEcc
Confidence 45689999999999999999999974 3899999986543
No 472
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.11 E-value=0.036 Score=49.89 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=32.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+|+|+|+|++|++++..+...|.+|+++|+++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999999853
No 473
>PLN02572 UDP-sulfoquinovose synthase
Probab=95.10 E-value=0.051 Score=48.53 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=30.1
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCCCcEEEEecc
Q 024233 18 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 18 ~~~dV~IIGg-G~aGl~~A~~La~~g~~V~viE~~ 51 (270)
+...|+|.|| |..|..++..|+++|++|+++|+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 3457999997 999999999999999999999853
No 474
>PRK08223 hypothetical protein; Validated
Probab=95.10 E-value=0.035 Score=46.16 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=33.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCccc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSAI 55 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~~ 55 (270)
.+.+|+|||+|=.|+.+|..|++.|. +++|+|.+....
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 35699999999999999999999999 799999986543
No 475
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.10 E-value=0.064 Score=36.04 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.8
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhC-CCcEEEEec
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEK 50 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~-g~~V~viE~ 50 (270)
...+++|+|.|-+|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 446899999999999999999998 578999999
No 476
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.09 E-value=0.03 Score=47.19 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=31.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|..|..+|..|+++|++|+++|+++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 799999999999999999999999999999854
No 477
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.09 E-value=0.035 Score=46.93 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=29.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
+|+|||+|-+|.++|+.|..+++ ++.|+|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999887 699999864
No 478
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.07 E-value=0.044 Score=44.76 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.6
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
...+++|+|||..+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346999999999999999999999999999998754
No 479
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.06 E-value=0.034 Score=49.92 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=31.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
.+|+|+|.|.+|+++|..|.++|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 589999999999999999999999999999874
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.06 E-value=0.044 Score=43.01 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=31.1
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGg-G~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...+++|+|| |.+|..+|..|++.|.+|+++.|+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3468999997 9999999999999999999998763
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.02 E-value=0.032 Score=49.91 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|+|||+|..|..+|..|.++|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999753
No 482
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.99 E-value=0.041 Score=48.50 Aligned_cols=36 Identities=31% Similarity=0.194 Sum_probs=32.7
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
....|+|+|.|.+|..+|..|...|.+|+++|+++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 346899999999999999999999999999998864
No 483
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.036 Score=50.11 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=31.0
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
...|+|+|.|.+|++++..|.++|.+|++.|+.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3589999999999999999999999999999763
No 484
>PLN02602 lactate dehydrogenase
Probab=94.96 E-value=0.059 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=30.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC--cEEEEeccC
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 52 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~--~V~viE~~~ 52 (270)
.+|+|||+|-+|.++|+.|+..+. ++.|+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998887 699999864
No 485
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.95 E-value=0.028 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||.|..|..+|..|+++|++|++++|++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999864
No 486
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.95 E-value=0.039 Score=48.10 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=31.7
Q ss_pred CcceEEEEc-CCHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIG-gG~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
....|+||| .|..|.++|..|.++|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 346899999 89999999999999999999999864
No 487
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.94 E-value=0.094 Score=47.52 Aligned_cols=35 Identities=43% Similarity=0.609 Sum_probs=33.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
+||+|||||++||++|..|+++|++|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 58999999999999999999999999999999654
No 488
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.93 E-value=0.038 Score=46.46 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=31.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 3799999999999999999999999999998753
No 489
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.88 E-value=0.04 Score=48.73 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=33.3
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 54 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~~ 54 (270)
.++|+|+|-|.+|+++|..|.++|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999987654
No 490
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.87 E-value=0.047 Score=37.37 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=28.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CcEEEE-eccC
Q 024233 21 RILVAGGGIGGLVFALAAKRKG---FEVLVF-EKDM 52 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g---~~V~vi-E~~~ 52 (270)
+|.|||+|-.|.+++..|.++| .+|.++ +|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 4789999999999999999999 789866 8875
No 491
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.87 E-value=0.044 Score=47.58 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
..+|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVD 77 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc
Confidence 4689999999999999999999998 89999998543
No 492
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.85 E-value=0.045 Score=49.04 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=29.2
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCCCcEEEEecc
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 51 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~ 51 (270)
..+|+|+|.|.+|.++|..|.+ |.+|++.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4689999999999999999995 9999999965
No 493
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.042 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=31.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 20 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 20 ~dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
.+|+|||-|.+|+++|..|.++|++|+++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4799999999999999999999999999998753
No 494
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.055 Score=43.58 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.9
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGg-G~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
....++|+|| |..|..+|..|+++|++|+++.|++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 3467999986 9999999999999999999999875
No 495
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.76 E-value=0.068 Score=40.09 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=30.6
Q ss_pred cceEEEEcCCHHHHHHHHHHHhCC-CcEEEEeccC
Q 024233 19 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 52 (270)
Q Consensus 19 ~~dV~IIGgG~aGl~~A~~La~~g-~~V~viE~~~ 52 (270)
..+++|||+|..|.++|..|++.| .+|+++++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 468999999999999999999996 7899999874
No 496
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.74 E-value=0.05 Score=47.05 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=33.2
Q ss_pred CcceEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 18 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
.+.+|+|||.|-.|+.+|..|++.|. +++|+|.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve 64 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVD 64 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 35799999999999999999999999 79999998643
No 497
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.73 E-value=0.041 Score=46.39 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEeccCc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 53 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~~V~viE~~~~ 53 (270)
+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999999853
No 498
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.067 Score=43.45 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=31.3
Q ss_pred CcceEEEEcC-CHHHHHHHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGg-G~aGl~~A~~La~~g~~V~viE~~~ 52 (270)
+...++|.|| |-.|..+|.+|+++|.+|++++|..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3457999998 9999999999999999999999874
No 499
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.71 E-value=0.047 Score=49.05 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=31.4
Q ss_pred CcceEEEEcCCHHHHH-HHHHHHhCCCcEEEEeccC
Q 024233 18 KKLRILVAGGGIGGLV-FALAAKRKGFEVLVFEKDM 52 (270)
Q Consensus 18 ~~~dV~IIGgG~aGl~-~A~~La~~g~~V~viE~~~ 52 (270)
...+|.|||.|-+|++ +|..|.++|++|++.|.+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 3457999999999999 6999999999999999864
No 500
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.71 E-value=0.053 Score=43.91 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEeccCcc
Q 024233 21 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMSA 54 (270)
Q Consensus 21 dV~IIGgG~aGl~~A~~La~~g~-~V~viE~~~~~ 54 (270)
+|+|||+|-.|+.++..|++.|. +++|+|.+...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve 35 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTID 35 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 48999999999999999999998 79999998653
Done!