BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024235
(270 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/216 (93%), Positives = 209/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 75 PDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 134
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+VLVGG
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVGG 194
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGFF+QAY
Sbjct: 195 AEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFIQAY 254
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 255 VTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 290
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/216 (92%), Positives = 209/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWAMLG
Sbjct: 75 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLG 134
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++LVGG
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGG 194
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFF QAY
Sbjct: 195 AEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFFQAY 254
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G+AERAP+L
Sbjct: 255 VTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPSL 290
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/216 (92%), Positives = 209/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAMLG
Sbjct: 72 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 131
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AV+AEIVLVGG
Sbjct: 132 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGG 191
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 192 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 251
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 252 VTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/216 (91%), Positives = 209/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 77 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 136
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +IPINLV AVIAE+VL+GG
Sbjct: 137 AAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGG 196
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 197 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYFQAY 256
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 257 VTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/216 (92%), Positives = 208/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAMLG
Sbjct: 73 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 132
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AV+AEIVLVGG
Sbjct: 133 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGG 192
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 193 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 252
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 253 VTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPTL 288
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/216 (92%), Positives = 208/216 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAMLG
Sbjct: 72 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 131
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPIN + AV+AEIVLVGG
Sbjct: 132 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVGG 191
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 192 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 251
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 252 VTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/216 (92%), Positives = 207/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSKYQA+ELIHARWAMLG
Sbjct: 74 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLG 133
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVGG
Sbjct: 134 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 193
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 194 AEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 253
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 254 VTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/216 (91%), Positives = 206/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAMLG
Sbjct: 73 PDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLG 132
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+VLVGG
Sbjct: 133 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGG 192
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 193 AEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAY 252
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVISGNAER PTL
Sbjct: 253 VTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/216 (91%), Positives = 205/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 72 PDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 131
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVIAE+VLVGG
Sbjct: 132 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVVLVGG 191
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 192 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAY 251
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTG+GPVENLA HLSDPF NNLLTVI G ER PTL
Sbjct: 252 VTGQGPVENLAAHLSDPFGNNLLTVIGGATERVPTL 287
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/242 (82%), Positives = 213/242 (88%), Gaps = 5/242 (2%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 88
KP + S SP S L K PDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPF
Sbjct: 47 KPAAVSSSSPDISDELAK-----WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPF 101
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GL KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGN
Sbjct: 102 GLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGN 161
Query: 149 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQF 208
TLNYFG +IPINLV AVIAE+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ
Sbjct: 162 TLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQA 221
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 268
A+LKVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P
Sbjct: 222 AILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTP 281
Query: 269 TL 270
+L
Sbjct: 282 SL 283
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 213/242 (88%), Gaps = 5/242 (2%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 88
KP + S SP S L K PDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPF
Sbjct: 47 KPAAVSSSSPDISDELAK-----WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPF 101
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GL KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGN
Sbjct: 102 GLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGN 161
Query: 149 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQF 208
TLNYFG +IPINLV AVIAE++LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ
Sbjct: 162 TLNYFGNSIPINLVVAVIAEVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQA 221
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 268
A+LKVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P
Sbjct: 222 AILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTP 281
Query: 269 TL 270
+L
Sbjct: 282 SL 283
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/275 (74%), Positives = 228/275 (82%), Gaps = 9/275 (3%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP---PLTKSSP------SGMVSP 55
+LG QL + ++ ++ +K L S P+ P P++ SSP + P
Sbjct: 8 ILGTQLNFAGSSRYATAAPTAGAQKIVSLFSKKPAQKPKPVPVSSSSPDISDELAKWYGP 67
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYELIHARWAMLGA
Sbjct: 68 DRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGA 127
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV AVIAE+VLVGGA
Sbjct: 128 AGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGA 187
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
EYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+ML FF+QAYV
Sbjct: 188 EYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMLAFFIQAYV 247
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
TGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 248 TGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 282
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/216 (91%), Positives = 207/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAMLG
Sbjct: 76 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 135
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVGG
Sbjct: 136 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 195
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 196 AEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 255
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 256 VTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/216 (92%), Positives = 206/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSKYQA+ELIHARWAMLG
Sbjct: 74 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLG 133
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVGG
Sbjct: 134 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 193
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 194 AEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAY 253
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 254 VTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/216 (90%), Positives = 205/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+KYQAYELIHARWAMLG
Sbjct: 64 PDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLG 123
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIAE+VL+GG
Sbjct: 124 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLLGG 183
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LK KEIKNGRLAMFAMLGFFLQAY
Sbjct: 184 AEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFFLQAY 243
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENL+KHLSDPF NNLLTVIS +AER PTL
Sbjct: 244 VTGEGPVENLSKHLSDPFGNNLLTVISSSAERVPTL 279
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/242 (81%), Positives = 212/242 (87%), Gaps = 5/242 (2%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 88
KP + S SP S L K PDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPF
Sbjct: 47 KPSAVSSSSPDISDELAK-----WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPF 101
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GL KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGN
Sbjct: 102 GLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGN 161
Query: 149 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQF 208
TL+YFG +IPINLV AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ
Sbjct: 162 TLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQA 221
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 268
A+LKVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P
Sbjct: 222 AILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTP 281
Query: 269 TL 270
+L
Sbjct: 282 SL 283
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/216 (87%), Positives = 204/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVGG
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 208 AEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAY 267
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 268 VTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/216 (87%), Positives = 204/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFI+PEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVGG
Sbjct: 148 AAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 208 AEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAY 267
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 268 VTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/216 (87%), Positives = 204/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAMLG
Sbjct: 63 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 122
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVGG
Sbjct: 123 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 182
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 183 AEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAY 242
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 243 VTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 278
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/216 (87%), Positives = 203/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGL KKP++F KYQAYELIHARWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLG 147
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVGG
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 208 AEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAY 267
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 268 VTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/216 (87%), Positives = 203/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +I INL+ AV+AE++LVGG
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVGG 207
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 208 AEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAY 267
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 268 VTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/216 (86%), Positives = 202/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLG
Sbjct: 68 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 127
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+ E+VL+GG
Sbjct: 128 AAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLGG 187
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRITNGLD EDKLHPGGPFDPL LAKDP+Q ALLKVKEIKNGRLAMF+M FF+QAY
Sbjct: 188 AEYYRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMFAFFIQAY 247
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENL+KHLSDPF NNLLTVI+G AERAPTL
Sbjct: 248 VTGEGPVENLSKHLSDPFGNNLLTVIAGTAERAPTL 283
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/216 (91%), Positives = 210/216 (97%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 70 PDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 129
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGF+IPEAFNKFGA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GG
Sbjct: 130 AAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLLGG 189
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAMLGFF+QAY
Sbjct: 190 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAY 249
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTG+GPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 250 VTGKGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 285
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/233 (85%), Positives = 211/233 (90%), Gaps = 6/233 (2%)
Query: 44 LTKSSP------SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 97
+T SSP + PDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 98 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 157
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
PINL+ AV AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIK
Sbjct: 171 PINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 230
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
NGRLAMF+MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 231 NGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/224 (89%), Positives = 210/224 (93%), Gaps = 3/224 (1%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SSPSG PDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELI
Sbjct: 2 SSPSG---PDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELI 58
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
HARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV
Sbjct: 59 HARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVA 118
Query: 167 AEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+M
Sbjct: 119 AEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 178
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
LGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 179 LGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 222
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/233 (85%), Positives = 211/233 (90%), Gaps = 6/233 (2%)
Query: 44 LTKSSP------SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 97
+T SSP + PDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 98 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 157
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
PINL+ AV AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIK
Sbjct: 171 PINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 230
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
NGRLAMF+MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 231 NGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/216 (90%), Positives = 207/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 71 PDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 130
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+ AV+AE+VLVGG
Sbjct: 131 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVAEVVLVGG 190
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 191 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAY 250
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTG+GPVENLA HLSDPF NNLLTVI G +ER PTL
Sbjct: 251 VTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPTL 286
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/216 (90%), Positives = 207/216 (95%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GG
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGG 184
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAY
Sbjct: 185 AEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAY 244
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 245 VTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/226 (86%), Positives = 209/226 (92%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T + PDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+E
Sbjct: 55 TSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFE 114
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
LIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV A
Sbjct: 115 LIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLA 174
Query: 165 VIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
V+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMF
Sbjct: 175 VVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMF 234
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
AMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 235 AMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/226 (86%), Positives = 209/226 (92%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T + PDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+E
Sbjct: 55 TSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFE 114
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
LIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV A
Sbjct: 115 LIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLA 174
Query: 165 VIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
V+AE+VL+GG+EYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMF
Sbjct: 175 VVAEVVLLGGSEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMF 234
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
AMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 235 AMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/216 (89%), Positives = 205/216 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+KYQAYELIHARWAMLG
Sbjct: 71 PDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLG 130
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV+AE+VLVGG
Sbjct: 131 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGG 190
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 191 AEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAY 250
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENL+ HLSDPF NNLLTVISG AER P+L
Sbjct: 251 VTGEGPVENLSAHLSDPFGNNLLTVISGAAERTPSL 286
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/216 (88%), Positives = 203/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYELIHARWAMLG
Sbjct: 68 PDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLG 127
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL AV+AE+VLVGG
Sbjct: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVGG 187
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 188 AEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAY 247
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 248 VTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 283
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/216 (86%), Positives = 202/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR +IPEYL GEVPGDYGYDPFGL +KP++F KYQAYELIHARWAMLG
Sbjct: 87 PDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLG 146
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE+VLVGG
Sbjct: 147 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGG 206
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYR TNGL+ +DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFFLQAY
Sbjct: 207 AEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQAY 266
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLA HLSDPF NN+LTV+ G+ ERAPTL
Sbjct: 267 VTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL 302
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/216 (87%), Positives = 200/216 (92%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYELIHARWAMLG
Sbjct: 68 PDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLG 127
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL AV+AE+VLVGG
Sbjct: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVGG 187
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRI NGLDLE KLHPGGPFDPLGLA DPDQ A LKVKEIKNGRLAMF MLGFF+QAY
Sbjct: 188 AEYYRIINGLDLEGKLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFIQAY 247
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGPVENLAKHLSDPF NNLLTVIS AERAP+L
Sbjct: 248 VTGEGPVENLAKHLSDPFGNNLLTVISAGAERAPSL 283
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/210 (84%), Positives = 192/210 (91%), Gaps = 1/210 (0%)
Query: 57 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 116
RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF KYQAYELIHARWAMLGAA
Sbjct: 63 RRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAA 122
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 176
GF+IPEAFNKFGA CGPEAVWFKTGALLLDG TLNYFG NIPINLV AV+AE++LVGGAE
Sbjct: 123 GFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGGAE 182
Query: 177 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
YYR N L L D+LHPGGPFDPLGLAKDPD FALLKVKEIKNGRLAMFAMLGFF+QAY T
Sbjct: 183 YYRSINNLGL-DRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFFIQAYAT 241
Query: 237 GEGPVENLAKHLSDPFANNLLTVISGNAER 266
GEGPVENL HLSDPF NNLL+VI+G E+
Sbjct: 242 GEGPVENLTTHLSDPFGNNLLSVIAGGIEK 271
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/216 (86%), Positives = 201/216 (93%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+KYQA+ELIHARWAMLG
Sbjct: 71 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLG 130
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV+AE+VLVGG
Sbjct: 131 AAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGG 190
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEYYRITNGL+ +DKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAY
Sbjct: 191 AEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFIQAY 250
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VTGEGP ENL HLSDPF NNLLTVISG AER P+L
Sbjct: 251 VTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPSL 286
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/220 (80%), Positives = 196/220 (89%), Gaps = 4/220 (1%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF +YQAYELIHARWAMLG
Sbjct: 51 PDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLG 110
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +PINL AVIAE++LVGG
Sbjct: 111 AAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVGG 170
Query: 175 AEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
AEYYR TN GL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF
Sbjct: 171 AEYYRSTNKDVYGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFF 230
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
+QAYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 231 VQAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 270
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/220 (81%), Positives = 199/220 (90%), Gaps = 5/220 (2%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF +YQAYELIHARWAMLG
Sbjct: 9 PDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLG 68
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +P+NL AVIAE++LVGG
Sbjct: 69 AAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVGG 128
Query: 175 AEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
AEYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF
Sbjct: 129 AEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFF 187
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
+QAYVTGEGPVENL+ HLSDPF NNLLTVI G AERAP+L
Sbjct: 188 VQAYVTGEGPVENLSAHLSDPFGNNLLTVIQGTAERAPSL 227
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 362 bits (929), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 172/186 (92%), Positives = 180/186 (96%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWAMLG
Sbjct: 75 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLG 134
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++LVGG
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGG 194
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
AEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFFLQAY
Sbjct: 195 AEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQAY 254
Query: 235 VTGEGP 240
VTG+ P
Sbjct: 255 VTGDVP 260
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 181/201 (90%), Positives = 190/201 (94%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
NCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVGGAEYYRI NGLDLEDK
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDK 120
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
LHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENL+KHLS
Sbjct: 121 LHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 180
Query: 250 DPFANNLLTVISGNAERAPTL 270
DPF NNLLTVISG AER P+L
Sbjct: 181 DPFGNNLLTVISGAAERTPSL 201
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/226 (77%), Positives = 190/226 (84%), Gaps = 3/226 (1%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T +S S PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 39 TAASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 95
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
+IH RWAMLG AGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ A
Sbjct: 96 VIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILA 155
Query: 165 VIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
VIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF
Sbjct: 156 VIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMF 215
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 216 SMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 261
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/165 (95%), Positives = 161/165 (97%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAMLG
Sbjct: 76 PDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 135
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VLVGG
Sbjct: 136 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLVGG 195
Query: 175 AEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
AEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 196 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG 240
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 163/171 (95%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+ E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/171 (90%), Positives = 162/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 162/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 162/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVE+LA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYV G+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+ PVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA H+SDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNNLLTVISGNIERVPTL 171
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVI GN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIYGNIERVPTL 171
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 161/171 (94%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKT ALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 160/171 (93%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLH GGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHHGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 139/149 (93%), Positives = 145/149 (97%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AVIAE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVIAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/159 (87%), Positives = 147/159 (92%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AVIAE+VL
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVL 60
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+M FF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 120
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 149/159 (93%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VL
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVL 60
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI 120
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 151/175 (86%), Gaps = 5/175 (2%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQAYELIHARWA+L AAGF+ P AFNKFG+ CGPEA+W+KTGALLL+G+++ YFG +PI
Sbjct: 34 YQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPI 93
Query: 160 NLVFAVIAEIVLVGGAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
NL AVI+E+ LVGG+EYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKE
Sbjct: 94 NLAAAVISEVNLVGGSEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKE 152
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
I NGRLAMF+MLGFF++AYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 153 IMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 207
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/149 (92%), Positives = 145/149 (97%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 144/149 (96%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 144/149 (96%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 143/149 (95%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
YQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
NLV AV+AE+VL+GGAEYYRITN LD EDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNELDFEDKLHPGGPFDPLGLAKDPDQGALLKVKEIKNG 120
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 150/233 (64%), Gaps = 64/233 (27%)
Query: 44 LTKSSP------SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 97
+T SSP + PDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+D
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPED- 109
Query: 98 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 157
F+K+ A A W
Sbjct: 110 --------------------------FSKYQAYELIHARW-------------------- 123
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIK
Sbjct: 124 -----------VVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 172
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
NGRLAMF+MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 173 NGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 225
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 159/241 (65%), Gaps = 29/241 (12%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
PDR++FLP GL DRSEIPEYL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML
Sbjct: 54 GPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAML 113
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 167
AAG +IPE GAN WF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 114 AAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIA 170
Query: 168 -EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFA 209
E+ L+G E+YR NG D D L+PGGPFDPLGLA DP+
Sbjct: 171 VEVGLMGAVEFYR-RNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 229
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269
LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PT
Sbjct: 230 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPT 288
Query: 270 L 270
L
Sbjct: 289 L 289
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/240 (54%), Positives = 158/240 (65%), Gaps = 29/240 (12%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +FLP GL DRSE+P YL GE+ GDYGYDP GL K + +KY+ YEL+HARWAML
Sbjct: 52 PDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLA 111
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA- 167
AAG +IPE GAN VWF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 112 AAGILIPEGLQANGANI-KGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAI 168
Query: 168 EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFAL 210
E+ L+G E+YR NG + D ++PGGPFDPLGLA DP+ F
Sbjct: 169 EVGLMGAVEFYR-RNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQE 227
Query: 211 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
LKVKEIKNGRLAM ++L F +Q+YVTGEGP N KH+ DPF NLLTV+ GN +R PTL
Sbjct: 228 LKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL-GNEDRVPTL 286
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/147 (82%), Positives = 130/147 (88%), Gaps = 6/147 (4%)
Query: 44 LTKSSP------SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 97
+T SSP + PDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 98 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 157
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNGL 184
PINL+ AV AE+VLVGGAEYYRI NGL
Sbjct: 171 PINLIVAVAAEVVLVGGAEYYRIINGL 197
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/241 (55%), Positives = 159/241 (65%), Gaps = 29/241 (12%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
PDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML
Sbjct: 24 GPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAML 83
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 167
AAG +IPE GAN WF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 84 AAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIA 140
Query: 168 -EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFA 209
E+ L+G E+YR NG D D L+PGGPFDPLGLA DP+
Sbjct: 141 VEVGLMGAVEFYR-RNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 199
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269
LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PT
Sbjct: 200 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPT 258
Query: 270 L 270
L
Sbjct: 259 L 259
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 155/237 (65%), Gaps = 23/237 (9%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SKYQA EL+HARWAML
Sbjct: 51 PDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLA 110
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG---KNI--PINLVFAVIAEI 169
AAG IIPE GA+ A WF+TGA +L+G TLN+F NI P+ L V A +
Sbjct: 111 AAGAIIPEGLAANGADV-KGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANV 169
Query: 170 VLVGGAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
L+G AE YR T + D D L+PGGPFDPLGLA DP+ A LKV
Sbjct: 170 ALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELKV 229
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
KEIKNGRLAM + LGF +QA VTGEGP N +KH++DPF NLLT+++G +RAPTL
Sbjct: 230 KEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILAGE-DRAPTL 285
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 153/240 (63%), Gaps = 29/240 (12%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P R +FLP GLLD S++P YL G + GDYGYDP GL K KY+AYELIHARWAML
Sbjct: 96 PSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLA 155
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINLVFAVIAEI 169
AAG IIPE GA WF+TGA +L+G TLNYF N P+ L V+ E+
Sbjct: 156 AAGIIIPEGLQANGAAI-KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEV 214
Query: 170 VLVGGAEYYR-------------------ITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL 210
L+G E YR I +GLD L+PGGPFDPLGLA DP+ FA
Sbjct: 215 ALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLD---NLYPGGPFDPLGLADDPETFAE 271
Query: 211 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
LKVKEIKNGRLA+ ++LGF +Q+YVTGEGP N +KH++DPF NLLT+I G +R PTL
Sbjct: 272 LKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII-GAEDRVPTL 330
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 154/238 (64%), Gaps = 23/238 (9%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
P+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + KY+A EL+HARWAML
Sbjct: 48 GPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAML 107
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINLVFAVIAE 168
AAG +IPE GA+ WF+TGA +L+G TLNYF P+ L + E
Sbjct: 108 AAAGILIPEGLQANGADI-KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIE 166
Query: 169 IVLVGGAEYYRI----------------TNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 212
IVL+G E +R+ ++ D D+L+PGGPFDPL LA DP+ FA L+
Sbjct: 167 IVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAELQ 226
Query: 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
VKE KNGRLAM +L F +Q+YVTGEGP N KH+SDPF NLLTV+ G+ +R PTL
Sbjct: 227 VKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQGD-DRVPTL 283
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 115/131 (87%), Gaps = 6/131 (4%)
Query: 44 LTKSSP------SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 97
+T SSP + PDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 98 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 157
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 158 PINLVFAVIAE 168
PINL+ AV AE
Sbjct: 171 PINLIVAVAAE 181
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 118/140 (84%), Gaps = 5/140 (3%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 88
KP + S SP S L K PDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPF
Sbjct: 47 KPSAVSSSSPDISDELAK-----WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPF 101
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GL KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGN
Sbjct: 102 GLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGN 161
Query: 149 TLNYFGKNIPINLVFAVIAE 168
TL+YFG +IPINLV AVIAE
Sbjct: 162 TLSYFGNSIPINLVVAVIAE 181
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 142/207 (68%), Gaps = 11/207 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL ++ P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLG
Sbjct: 39 PDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 94
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE K G + G EAVWFK GA + + LNY G + ++ ++ + +++L
Sbjct: 95 ALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVIL 153
Query: 172 VGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+GGAE YR GL+ D L+PGGPFDPLGLA DPD F+ LKVKEIKNGRLAMF+M G
Sbjct: 154 MGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFG 213
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANN 255
FF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 214 FFVQAIVTGKGPIENLSDHLADPGVNN 240
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 138/208 (66%), Gaps = 9/208 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+LG
Sbjct: 36 PDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE +++ E VWFK GA + LNY G I+ ++ + ++VL
Sbjct: 94 ALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVL 153
Query: 172 VGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ L
Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 138/208 (66%), Gaps = 9/208 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+LG
Sbjct: 36 PDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE +++ E VWFK GA + LNY G I+ ++ + ++VL
Sbjct: 94 ALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVL 153
Query: 172 VGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ L
Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 154/250 (61%), Gaps = 12/250 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEY 74
+ LLS+ + S RR S S +T++S PDR FL G P Y
Sbjct: 3 SALLSNSFVVSARRTV----SSPKSKGKQVTRASIE-WYGPDRPKFL--GPYSDGATPSY 55
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
L GE PGDYG+D GLS P+ FS+Y+ E+IH+RWA+LG G + PE K+G E
Sbjct: 56 LKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQE 115
Query: 135 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG--LDLEDK 189
AVWFK GA + + LNY G ++ ++ V +++L+G AE YR+ G ++ D
Sbjct: 116 AVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDP 175
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
L+PGG FDPLGLA DPD FA LKVKEIKNGRLA FA LGFF+QA VTG+GP++NL HL+
Sbjct: 176 LYPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLA 235
Query: 250 DPFANNLLTV 259
DPFA N T+
Sbjct: 236 DPFAVNGFTI 245
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 137/208 (65%), Gaps = 9/208 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+LG
Sbjct: 36 PDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE +++ E VWFK GA + LNY G I+ ++ + ++VL
Sbjct: 94 ALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVL 153
Query: 172 VGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ L
Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GPV+NL HL+DP N
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADPTVNK 241
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 149/238 (62%), Gaps = 16/238 (6%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVS---PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 85
K + S+ P+ + + P + PDR FL G ++P YLTGE PGDYG+
Sbjct: 6 KSAVRSSVRPTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDVPSYLTGEFPGDYGW 63
Query: 86 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 145
D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 64 DTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIF 123
Query: 146 DGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFD 197
LNY G NLV A +IA ++V++G AE YR G E D LHPGG FD
Sbjct: 124 AEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFD 180
Query: 198 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
PLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 181 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 238
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 140/207 (67%), Gaps = 11/207 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL +E P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLG
Sbjct: 34 PDRAGFLGP----FTESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 89
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE K G + G EAVWFK GA + + LNY G ++ ++ + +++L
Sbjct: 90 ALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVIL 148
Query: 172 VGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+GGAE YR G++ D L+PGGPFDPLGLA DPD FA LK KEIKNGRLAMF+M G
Sbjct: 149 MGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMFG 208
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANN 255
FF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 209 FFVQAIVTGKGPIENLSDHLADPGVNN 235
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 150/244 (61%), Gaps = 13/244 (5%)
Query: 20 SPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEV 79
S ++ S R + P+ S + + + PDR FL G + P YLTGE
Sbjct: 2 SAVVKSAVRSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEF 59
Query: 80 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 139
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK
Sbjct: 60 PGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFK 119
Query: 140 TGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLH 191
GA + LNY G NLV A +IA ++V++G AE YR G E D LH
Sbjct: 120 AGAQIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLH 176
Query: 192 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P
Sbjct: 177 PGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANP 236
Query: 252 FANN 255
A N
Sbjct: 237 SAVN 240
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 150/241 (62%), Gaps = 22/241 (9%)
Query: 32 LLPSLSPSPSPPLTKSSPSGMV---------SPDRRIFLPEGLLDRSEIPEYLTGEVPGD 82
++ S + S P+T +S + V PDR FL G + P YLTGE PGD
Sbjct: 4 IVKSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGD 61
Query: 83 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 142
YG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA
Sbjct: 62 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 121
Query: 143 LLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGG 194
+ LNY G NLV A +IA ++V++G AE YR G E D LHPGG
Sbjct: 122 QIFAEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGG 178
Query: 195 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 254
FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A
Sbjct: 179 AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAV 238
Query: 255 N 255
N
Sbjct: 239 N 239
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 135/192 (70%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+ Y+ ELIHARWAMLGA G + PE +K+
Sbjct: 49 DTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNG--- 183
EAVWFK GA + L+Y G + + + A++ ++VL+GGAE +R+ G
Sbjct: 109 VEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSILAILGCQVVLMGGAEAFRVNGGPLG 168
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
DL DKLHPGG FDPLGLA DPD F+ LKVKEIKNGRLAMF+M GFF+QA VTG+GPVEN
Sbjct: 169 EDL-DKLHPGGAFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVEN 227
Query: 244 LAKHLSDPFANN 255
A+H++DP +N
Sbjct: 228 WAEHIADPSGSN 239
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 146/236 (61%), Gaps = 15/236 (6%)
Query: 34 PSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 93
P+ S + P S P PDR FL G + P YLTGE PGDYG+D GLS
Sbjct: 36 PTKSSGSTAPQLSSWP--WYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSAD 91
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA + LNY
Sbjct: 92 PETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYL 151
Query: 154 GKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDP 205
G NLV A +IA ++V++G AE YR G E D LHPGG FDPLGLA DP
Sbjct: 152 GNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDP 208
Query: 206 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
D FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N +
Sbjct: 209 DTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYAT 264
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 138/209 (66%), Gaps = 13/209 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 36 PDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----E 168
A G + PE +K+ EAVWFK GA + LNY G NLV A +IA +
Sbjct: 94 ALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAFQ 150
Query: 169 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 151 VVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 210
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 211 FGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 138/209 (66%), Gaps = 13/209 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 36 PDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----E 168
A G + PE +K+ EAVWFK GA + LNY G NLV A +IA +
Sbjct: 94 ALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAFQ 150
Query: 169 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 151 VVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 210
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 211 FGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARWAMLG
Sbjct: 131 PDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLG 188
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE K+ E VWFK G+ + L+Y G + + A++A +++L
Sbjct: 189 ALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVIL 248
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLGF
Sbjct: 249 MGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 308
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLT 258
++QA TG+GPVEN A+H++DP N LT
Sbjct: 309 YVQAIATGKGPVENWAEHIADPAGVNGLT 337
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARWAMLG
Sbjct: 118 PDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLG 175
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE K+ E VWFK G+ + L+Y G + + A++A +++L
Sbjct: 176 ALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVIL 235
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLGF
Sbjct: 236 MGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 295
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLT 258
++QA TG+GPVEN A+H++DP N LT
Sbjct: 296 YVQAIATGKGPVENWAEHIADPAGVNGLT 324
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 138/208 (66%), Gaps = 7/208 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAMLG
Sbjct: 115 PDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLG 172
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE +K+ E VWFK G+ + L+Y G I + A++A ++VL
Sbjct: 173 ALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQVVL 232
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLGF
Sbjct: 233 MGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 292
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLL 257
++QA TG+GPVEN A+H++DP N L
Sbjct: 293 YVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 136/191 (71%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS +P+ F+K + E+IHARWAMLG G I+PE + G
Sbjct: 67 QTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGV 126
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + LNY G K I + AV+A +++L+G E YRI+ G
Sbjct: 127 KIG-EAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISGGPLG 185
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPL LA DP++FA+LKVKEIKNGRLAMFAMLGF++QA VTG+GP+ENL
Sbjct: 186 EPTDPLYPGGNFDPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFYVQAIVTGKGPLENL 245
Query: 245 AKHLSDPFANN 255
HL+DPF NN
Sbjct: 246 YDHLADPFKNN 256
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 137/209 (65%), Gaps = 7/209 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLG
Sbjct: 36 PDRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLG 93
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE K+G E+VWF+ GA + L+Y G I+ + VI++++L
Sbjct: 94 ALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVIL 153
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF
Sbjct: 154 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 213
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLT 258
++QA VTG+GPVEN A+H++DPF N +
Sbjct: 214 YVQAIVTGKGPVENWAEHIADPFTANAFS 242
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/256 (47%), Positives = 155/256 (60%), Gaps = 23/256 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ S+ ++ S S SPSP PDR ++L
Sbjct: 26 LLGVGAGVHGEARVTMRKSSTTKKV-----SASASPSP---------WYGPDRVLYLGP- 70
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 71 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 128
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI
Sbjct: 129 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA 187
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+G
Sbjct: 188 GGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 247
Query: 240 PVENLAKHLSDPFANN 255
P+ENLA HL+DP NN
Sbjct: 248 PIENLADHLADPVTNN 263
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 137/209 (65%), Gaps = 7/209 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLG
Sbjct: 33 PDRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLG 90
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE K+G E+VWF+ GA + L+Y G I+ + VI++++L
Sbjct: 91 ALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVIL 150
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF
Sbjct: 151 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 210
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLT 258
++QA VTG+GPVEN A+H++DPF N +
Sbjct: 211 YVQAIVTGKGPVENWAEHVADPFTANAFS 239
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 139/212 (65%), Gaps = 7/212 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAMLG
Sbjct: 130 PDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLG 187
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
G + PE K+ E VWFK G+ + L+Y G + + A++A +++L
Sbjct: 188 TLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVIL 247
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLGF
Sbjct: 248 MGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 307
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 308 YVQAISTGKGPVENWAEHIADPSGVNGLTLAT 339
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 13/225 (5%)
Query: 46 KSSPS-----GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P+ P+R +L G P YLTGE PGDYG+D GL+ P F+KY
Sbjct: 128 KSTPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKY 185
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 186 REAELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVH 244
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 245 AQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKE 304
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KNGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 305 LKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 13/225 (5%)
Query: 46 KSSPS-----GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P+ P+R +L G P YLTGE PGDYG+D GL+ P F+KY
Sbjct: 368 KSTPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKY 425
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 426 REAELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVH 484
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 485 AQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKE 544
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KNGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 545 LKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 8 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 67
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
GRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 68 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 139/212 (65%), Gaps = 7/212 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAMLG
Sbjct: 131 PDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLG 188
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
G + PE K+ E VWFK G+ + L+Y G + + A++A +++L
Sbjct: 189 TLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVIL 248
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLGF
Sbjct: 249 MGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 308
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 309 YVQAISTGKGPVENWAEHIADPSGVNGLTLAT 340
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 145/225 (64%), Gaps = 13/225 (5%)
Query: 46 KSSPS-----GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P+ P+R +L G + P YLTGE PGDYG+D GL+ P F+KY
Sbjct: 351 KSTPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKY 408
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 409 REAELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVH 467
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 468 AQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKE 527
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KNGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 528 LKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 145/225 (64%), Gaps = 13/225 (5%)
Query: 46 KSSPS-----GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P+ P+R +L G + P YLTGE PGDYG+D GL+ P F+KY
Sbjct: 591 KSTPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKY 648
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 649 REAELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVH 707
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 708 AQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKE 767
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KNGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 768 LKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 13/225 (5%)
Query: 46 KSSPS-----GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P+ P+R +L G P YLTGE PGDYG+D GL+ P F+KY
Sbjct: 111 KSTPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKY 168
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 169 REAELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVH 227
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 228 AQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKE 287
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KNGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 288 LKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 171 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 1 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 60
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 61 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 92
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 51 ASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G I +
Sbjct: 108 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSI 166
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG 226
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 262
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 145/235 (61%), Gaps = 11/235 (4%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVS---PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 85
K + S+ P+ S + P + PDR FL G + P YLTGE PGDYG+
Sbjct: 6 KSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGW 63
Query: 86 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 145
D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 64 DTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIF 122
Query: 146 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLG 200
LNY G I + A +A ++V++G AE YR G E D LHPGG FDPLG
Sbjct: 123 AEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLG 182
Query: 201 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 183 LADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 41 SPPLTKSSPSGM--VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
S + K +PSG+ P+R +L G + P YLTGE PGDYG+D GLS P+ F
Sbjct: 25 SKTVAKPAPSGIEWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFK 82
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 158
+Y+ ELIHARWAMLGA G + PE +K G G EAVWFK GA + L+Y G
Sbjct: 83 RYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSL 141
Query: 159 I---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKV 213
+ N+V + +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKV
Sbjct: 142 VHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV 201
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 202 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNN 243
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 153/253 (60%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL-----SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSSP L+ K P P L S S SS S PDR +L
Sbjct: 4 STMALSSPSLAGKAVKLAPSTPELNVGRVSMRKSASRNVSSGSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVTNN 252
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 37 TMRKTASKKVVASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 93
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 94 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYLG 152
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 153 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFA 212
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 154/256 (60%), Gaps = 24/256 (9%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ R+ S+S S SP PDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKAATKKVSVSASTSP---------WYGPDRVLYLGP- 69
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 70 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 127
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI
Sbjct: 128 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 186
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 187 GGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 240 PVENLAKHLSDPFANN 255
P+ENLA HL+DP +NN
Sbjct: 247 PIENLADHLADPVSNN 262
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 154/256 (60%), Gaps = 24/256 (9%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ R+ S+S S SP PDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSP---------WYGPDRVLYLGP- 69
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 70 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 127
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI
Sbjct: 128 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 186
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 187 GGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 240 PVENLAKHLSDPFANN 255
P+ENLA HL+DP +NN
Sbjct: 247 PIENLADHLADPVSNN 262
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 157/258 (60%), Gaps = 27/258 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG--MVSPDRRIFLP 62
T+ LSSP L+ K L+PS S + TK PSG PDR +L
Sbjct: 5 TMALSSPSLAGKAVK------LNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDRVKYLG 58
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 59 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
++ G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR
Sbjct: 116 LLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYR 174
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 175 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 234
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HLSDP NN
Sbjct: 235 KGPLENLADHLSDPVNNN 252
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 139/219 (63%), Gaps = 12/219 (5%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S P+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH R
Sbjct: 466 SAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 523
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA 167
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++A
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILA 583
Query: 168 -EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
+++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGR
Sbjct: 584 TQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 642
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
LAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 643 LAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 681
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 132/198 (66%), Gaps = 10/198 (5%)
Query: 71 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+P YLTGE+PGDYG+D GL P +Y+ ELIH RWAMLGA G +PE N+F
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 131 CGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITN----- 182
E +WFK GA + LNYFG+ I+ + A++A +++L+G E YR N
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 183 -GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAM AMLGF+ QA VTGEGPV
Sbjct: 121 FGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Query: 242 ENLAKHLSDPFANNLLTV 259
EN HL DP A+N LT
Sbjct: 180 ENWLYHLQDPSAHNGLTA 197
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 143/242 (59%), Gaps = 17/242 (7%)
Query: 32 LLPSLSPSPSPPLT---KSSPSGM---VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 85
L+ +P+P +P+G+ PDR +L G + P YL GE+PGDYG+
Sbjct: 199 LVTQFAPTPVAMFAAGGSKAPAGLSQWYGPDRSKWL--GPYSDALTPPYLNGELPGDYGW 256
Query: 86 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 145
D GL P +Y+ ELIH RWAMLGA G + PE ++ E VWFK GA +
Sbjct: 257 DSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIF 316
Query: 146 DGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL-----DLEDKLHPGGPFD 197
L+Y G ++ ++ + +++L+G AE YR NGL DL D L+PGGPFD
Sbjct: 317 SEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNFGKDL-DSLYPGGPFD 375
Query: 198 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
PLGLA DPD A LKVKEIKNGRLAMFAM GF++QA VTGE P+ENL+ HL+ PF N L
Sbjct: 376 PLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGL 435
Query: 258 TV 259
Sbjct: 436 NA 437
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 157/258 (60%), Gaps = 27/258 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG--MVSPDRRIFLP 62
T+ LSSP L+ K L+PS S + TK PSG PDR +L
Sbjct: 5 TMALSSPSLAGKAVK------LNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDRVKYLG 58
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 59 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
++ G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR
Sbjct: 116 LLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYR 174
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 175 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 234
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HLSDP NN
Sbjct: 235 KGPLENLADHLSDPVNNN 252
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/107 (88%), Positives = 101/107 (94%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 161
AAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPIN
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINF 194
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 156/259 (60%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL-------------TKSSPSGMVSPDRRIFL 61
T++LSSP L+ K L+PSP+ L + SS S PDR +L
Sbjct: 4 TMVLSSPSLAGKAVK------LAPSPASELMGNGRISMRKTGKSVSSGSPWYGPDRVKYL 57
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 58 GP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK GA + L+Y G + + A+ A ++VL+G E Y
Sbjct: 115 ELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGY 173
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA DP+ F+ LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 174 RIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 139/219 (63%), Gaps = 12/219 (5%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S P+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH R
Sbjct: 239 SAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 296
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA 167
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++A
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILA 356
Query: 168 -EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
+++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGR
Sbjct: 357 TQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 415
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
LAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 416 LAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 454
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 132/213 (61%), Gaps = 11/213 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G + P YL GE+PGDYG+D GL P +Y+ ELIH RWAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE ++ E VWFK GA + L+Y G ++ ++ + +++L
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
Query: 172 VGGAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+G AE YR NGL DL D L+PGGPFDPLGLA DPD A LKVKEIKNGRLAMFAM
Sbjct: 119 MGAAEAYRTGNGLGNFGKDL-DSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAM 177
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
GF++QA VTGE P+ENL+ HL+ PF N L
Sbjct: 178 FGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 210
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/109 (89%), Positives = 103/109 (94%)
Query: 162 VFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRL
Sbjct: 212 ILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRL 271
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
AMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 272 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSTERAPTL 320
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 154/258 (59%), Gaps = 17/258 (6%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSS------PSG--MVSPDRRIFLPEGL 65
T+ LSSP + P L + + K++ PSG PDR +L
Sbjct: 4 STMALSSPFAGQAVKTSPSSSELFGNGRVSMRKTAAAKKAAPSGSPWYGPDRVKYLGP-- 61
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE
Sbjct: 62 -FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 121 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 179
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 180 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 241 VENLAKHLSDPFANNLLT 258
+ENLA HL+DP ANN +
Sbjct: 240 LENLADHLADPVANNAWS 257
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 156/259 (60%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E ++ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 152/252 (60%), Gaps = 16/252 (6%)
Query: 15 TLLLSSPLLSSPRRKPPL------LPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDR 68
T+ LSSP L+ + + P P + SP DR ++L G L
Sbjct: 5 TMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASSGSP--WYGADRVLYL--GPLSG 60
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG G + PE + G
Sbjct: 61 REPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNG 120
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 121 VKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 179
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 180 GEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 240 LADHLADPVNNN 251
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 153/253 (60%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL-----SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSSP L+ K P P L S S SS S PDR +L
Sbjct: 1 STMALSSPSLAGKAVKLAPSTPELNVGRVSMRKSASRNVSSGSPWYGPDRVKYLGP---F 57
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 118 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIAGGP 176
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 177 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 236
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 237 NLADHLADPVTNN 249
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 157/252 (62%), Gaps = 15/252 (5%)
Query: 15 TLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTKSS---PSG--MVSPDRRIFLPEGLLDR 68
T+ LSSP + K P P + + + K++ PSG PDR ++L G L
Sbjct: 5 TMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYL--GPLS- 61
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGMVS---PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 85
K + S+ P+ S + P + PDR FL G + P YLTGE PGDYG+
Sbjct: 3 KSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGW 60
Query: 86 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 145
D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVWFK G+ +
Sbjct: 61 DTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIF 119
Query: 146 DGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFD 197
LNY G NLV A +IA ++V++G AE YR G E D LHPGG FD
Sbjct: 120 AEGGLNYLGNE---NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFD 176
Query: 198 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
PLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 177 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVN 234
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 146/229 (63%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + S SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 TMRKTASKSKNVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 91 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 149
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLAEDPEAFA 209
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 210 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWS 258
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ S P SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 SMRKSAGKPKNVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 10/209 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWAMLG
Sbjct: 31 PDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLG 88
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G ++PE K G VWFK GA + + LNY G I + A +A ++V+
Sbjct: 89 ALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVVV 148
Query: 172 VGGAEYYRITNG-----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+G AE +R G L+ D+L+PG FDP+GLA+DPD FA LKVKEIKNGRLAMF+M
Sbjct: 149 MGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLAMFSM 208
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 209 FGFFVQAIVTGQGPIANLDAHLADPSVNN 237
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 155/259 (59%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 147/227 (64%), Gaps = 10/227 (4%)
Query: 35 SLSPSPSPPLTKS-SPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 93
++ + + LT S S S PDR ++L E P YLTGE PGDYG+D GLS
Sbjct: 40 TMRKATTKKLTASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSAD 96
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y
Sbjct: 97 PENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
Query: 154 GKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQF 208
G + + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA+DP+ F
Sbjct: 156 GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAF 215
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 16/253 (6%)
Query: 15 TLLLSSPLLS-SPRRKPPLLP------SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSSP ++ +P + P ++ + + P +S S DR ++L G L
Sbjct: 5 TMALSSPAMAGTPVKVSRATPFGEGRITMRKTAAKPKVSASGSPWYGSDRVLYL--GPLS 62
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 63 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 122 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP 180
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 LGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 243 NLAKHLSDPFANN 255
NLA HLSDP NN
Sbjct: 241 NLADHLSDPVNNN 253
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 157/255 (61%), Gaps = 20/255 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGL 65
T+ LSSP+++ +P L + + P P + SP DR ++L G
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSP--WYGADRVLYL--GP 60
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 LS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
+ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 120 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 179 GPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 239 LENLADHLADPVNNN 253
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 16/253 (6%)
Query: 15 TLLLSSPLLS-SPRRKPPLLP------SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSSP ++ +P + P ++ + + P +S S DR ++L G L
Sbjct: 4 TMALSSPAMAGTPVKVSRATPFGEGRITMRKTAAKPKVSASGSPWYGSDRVLYL--GPLS 61
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 62 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HLSDP NN
Sbjct: 240 NLADHLSDPVNNN 252
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 146/229 (63%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 33 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 155/259 (59%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 155/260 (59%), Gaps = 19/260 (7%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPS----------LSPSPSPPLTKSSPSGMVSPDRRIFLPE 63
++ LSSP L+ + PS + S + SS S PDR +L
Sbjct: 4 SSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 63
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE
Sbjct: 64 ---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPEL 120
Query: 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 180
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 121 LSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179
Query: 181 TNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 180 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 239
Query: 239 GPVENLAKHLSDPFANNLLT 258
GP+ENLA HLSDP NN +
Sbjct: 240 GPLENLADHLSDPVNNNAWS 259
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ +SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 44 VVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 100
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 101 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 159
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 160 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 219
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 220 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 252
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 146/229 (63%), Gaps = 11/229 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + + P+ SSP PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 SMRKTVAKPVASSSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 88
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 148 NPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ +SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 VASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 104 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 153/256 (59%), Gaps = 20/256 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
T+ LSSP + K P P S+ S P++ SP PDR +L
Sbjct: 4 STMALSSPSFAGKAVKLTPSAPGLMGNARVSMRKSVGKPVSSGSP--WYGPDRVKYLGP- 60
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 61 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 119 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 177
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 178 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PVENLAKHLSDPFANN 255
P+ENLA HL+DP NN
Sbjct: 238 PLENLADHLADPVNNN 253
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 143/218 (65%), Gaps = 11/218 (5%)
Query: 45 TKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
TK PSG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 38 TKPVPSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G I
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 153
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 154 SILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELK 213
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+MLGFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 NGRLAMFSMLGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 156/255 (61%), Gaps = 19/255 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGL 65
T+ LSSP+++ +P L + + P P + SP DR ++L G
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSP--WYGADRVLYL--GP 60
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
+ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 121 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 179
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA DP+ A LKVK+IKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 180 GPLGEVVDPLYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ +SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 VASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 104 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ +SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 VVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 104 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 135/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 35 PDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 92
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G I PE K G G EAVWFK GA + LNY G I + A +A ++V+
Sbjct: 93 ALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVV 151
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 152 MGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 211
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP++NL HL++P A N
Sbjct: 212 FVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 142/220 (64%), Gaps = 11/220 (5%)
Query: 43 PLTKSSP--SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
P KSS S PDR +FL E P YLTGE PGDYG+D GLS P+ F +Y
Sbjct: 30 PAAKSSTPDSFWYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRY 86
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G I PE +G G E+VWFK GA + L+Y G +
Sbjct: 87 RELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAGAQIFQEGGLDYLGNPSLVH 145
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LKVKE
Sbjct: 146 AQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKE 205
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
IKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 206 IKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNN 245
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 155/259 (59%), Gaps = 20/259 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
T+ LSSP + K P P S+ + + P+ SSP PDR +L
Sbjct: 4 STMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSP--WYGPDRVKYLGP- 60
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 61 --FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YR+
Sbjct: 119 ARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA 177
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 178 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PVENLAKHLSDPFANNLLT 258
P+ENLA HL+DP NN +
Sbjct: 238 PLENLADHLADPVNNNAWS 256
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 154/259 (59%), Gaps = 27/259 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSP+P + K +PSG PDR +L
Sbjct: 4 STMALSSPSFAGKAVK------LSPAPRELMGNGRVSMRRTAKPTPSGSPWYGPDRVKYL 57
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 58 SP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK GA + L+Y G I + A+ A +++L+G E Y
Sbjct: 115 ELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGY 173
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
R+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 174 RVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 11/226 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + + P+ SSP PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 SMRKTVAKPVASSSP--WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 88
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 148 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 144/225 (64%), Gaps = 11/225 (4%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
+ + P + SSP PDR +L E P YLTGE P DYG+D GLS P+ F+
Sbjct: 40 TKAKPASSSSP--WYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPETFA 94
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 156
K + E+IH RWAMLGA G + PE F + G G EAVWFK GA + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSL 153
Query: 157 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/258 (47%), Positives = 154/258 (59%), Gaps = 22/258 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP + K L PS S + S T SS S PDR +L
Sbjct: 4 STMALSSPSFAGKAVK--LSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 VAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 155/255 (60%), Gaps = 20/255 (7%)
Query: 15 TLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGL 65
T+ LSSP + K P P S+ + + P+ SSP PDR +L
Sbjct: 5 TMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSP--WYGPDRVKYLGP-- 60
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 61 -FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+
Sbjct: 120 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 179 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 239 LENLADHLADPVNNN 253
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 154/259 (59%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 154/260 (59%), Gaps = 28/260 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIF 60
T+ LSSP + K LSPS S + KS+PS PDR +
Sbjct: 4 STMALSSPSFAGQAVK------LSPSTSEITGNGRITMRKAVAKSAPSSSPWYGPDRVKY 57
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 58 LGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 236 TGEGPVENLAKHLSDPFANN 255
TG+GP+ENLA HL+DP NN
Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 156/252 (61%), Gaps = 15/252 (5%)
Query: 15 TLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTKSS---PSG--MVSPDRRIFLPEGLLDR 68
T+ LSSP + K P P + + + K++ PSG PDR ++L G L
Sbjct: 5 TMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYL--GPLS- 61
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 155/253 (61%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSP---SPSPPLTKSSPSG--MVSPDRRIFLPEGLLD 67
T+ LSSP L+ K P P LS S +KS SG PDR +L
Sbjct: 4 STMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 145/229 (63%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 33 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/261 (47%), Positives = 154/261 (59%), Gaps = 22/261 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP L+ K L P+ S + P SS S PDR +L
Sbjct: 4 STMALSSPSLAGKAIK--LGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANNLLT 258
+GP+ENLA HL+DP NN +
Sbjct: 238 KGPLENLADHLADPVNNNAWS 258
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 154/252 (61%), Gaps = 15/252 (5%)
Query: 15 TLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTK-----SSPSGMVSPDRRIFLPEGLLDR 68
T+ LSSP + K P P L + + K SS S PDR +L
Sbjct: 5 TMALSSPAFAGKAVKLSPSSPELMGNGRVSMRKTTKPVSSGSPWYGPDRVKYLGP---FS 61
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 121
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPL 180
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 FASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 104 EVIHSRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 149/249 (59%), Gaps = 9/249 (3%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEI 71
H T L L S + ++ + SS S DR +L G L E
Sbjct: 7 THSTALAGQTALKSINELSRKVGNVQARVTMRKASSSDSIWYGADRPKYL--GPLS-GET 63
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 123
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G ++
Sbjct: 124 G-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEV 182
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 183 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSD 242
Query: 247 HLSDPFANN 255
HL+DP ANN
Sbjct: 243 HLADPVANN 251
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 154/249 (61%), Gaps = 12/249 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLP---SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEI 71
T+ LSSP L+ ++ S + P +S S DR ++L G L E
Sbjct: 5 TMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYL--GPLS-GEP 61
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G ++
Sbjct: 122 G-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 180
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 181 VDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 240
Query: 247 HLSDPFANN 255
HL+DP NN
Sbjct: 241 HLADPVNNN 249
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 143/222 (64%), Gaps = 11/222 (4%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
+ + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 39 TKAKPVSSGSP--WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 156
K + E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 157 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 143/229 (62%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + P SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 TMRKTAGKPKNVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/253 (49%), Positives = 155/253 (61%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTKS---SPSG--MVSPDRRIFLPEGLLD 67
T+ LSSP + K P P L + + K+ PSG PDR +L G L
Sbjct: 4 STMALSSPAFAGKAVKLSPSAPELMGNGRVNMRKTFNKPPSGSPWYGPDRVKYL--GPLS 61
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 62 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ S + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 TASKAKPVSSGSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 92
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 151
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 155/260 (59%), Gaps = 29/260 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTK--------------SSPSGMVSPDRRIF 60
T+ LSSP + K L+PS S L + SS S PDR +
Sbjct: 4 TMALSSPSFAGKAVK------LAPSASGVLGQGRVTMRKAGGKPAASSGSPWYGPDRVKY 57
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 58 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE + G G EAVWFK GA + L+Y G I + A+ A +++L+G E
Sbjct: 115 PELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 173
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 236 TGEGPVENLAKHLSDPFANN 255
TG+GP+ENLA HL+DP NN
Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 158/258 (61%), Gaps = 16/258 (6%)
Query: 10 LQVHQTLLLSSPLLS-SPRRKPPLLP------SLSPSPSPPLTKSSPSGMVSPDRRIFLP 62
+ T+ LSSP ++ +P + P ++ + P +S S DR ++L
Sbjct: 1 MAAAATMALSSPAMAGTPVKASRAAPFGEGRITMRKTAGKPKVAASSSPWYGSDRVLYL- 59
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 60 -GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 118 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 141/220 (64%), Gaps = 11/220 (5%)
Query: 43 PLTKSSP--SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
P +K+S S P+R +FL G E P YLTGE PGDYG+D GLS P+ F +Y
Sbjct: 29 PASKASTPDSFWYGPERPLFL--GAF-TGEPPSYLTGEFPGDYGWDTAGLSADPETFKRY 85
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 159
+ ELIHARWAMLGA G I PE K G G EAVWFK GA + L+Y G +
Sbjct: 86 RELELIHARWAMLGALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVH 144
Query: 160 --NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 215
N+V + +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKE
Sbjct: 145 AQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 204
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
IKNGRLAMF+M GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 205 IKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNN 244
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 145/227 (63%), Gaps = 11/227 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ S + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 37 TASKAKPVSSGSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 150
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 210
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 257
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 51 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 108 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 166
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG 226
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 142/219 (64%), Gaps = 11/219 (5%)
Query: 42 PPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
P T SP PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 PKATSGSP--WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 96 ELEVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+
Sbjct: 155 QSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEL 214
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 154/258 (59%), Gaps = 22/258 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP L+ K L P+ S + + SS S PDR +L
Sbjct: 4 STMALSSPSLAGKMVK--LAPTASEILGEGRITMRKTAGKTKSVSSDSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 VAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 143/217 (65%), Gaps = 11/217 (5%)
Query: 46 KSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS PSG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 KSVPSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KN
Sbjct: 157 ILAIWAVQVILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 157/259 (60%), Gaps = 27/259 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKS----------SPSG--MVSPDRRIFL 61
T+ LSSP L+ K L P+ S L +PSG PDR ++L
Sbjct: 4 STMALSSPSLAGTAVK------LGPNASQILGGGRVSMRKTGFKAPSGSPWYGPDRVLYL 57
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 58 --GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E ++ G G EAVWFK GA + L+Y G I + A+ A +++L+G E Y
Sbjct: 115 ELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGY 173
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 174 RIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 133/210 (63%), Gaps = 13/210 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + P YLTGE GDYG+D GLS P F+KY+ E+IHARWAMLG
Sbjct: 32 PDRPKFL--GPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLG 89
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G I PE K G G EAVWFK GA + LNY G + + A +A +++L
Sbjct: 90 ALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLL 148
Query: 172 VGGAEYYRITNGL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
+G AE YR G DL D L+PGG FDPLGLA DPD A LKVKEIKNGRLAMF+
Sbjct: 149 MGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMFS 207
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 208 MFGFFVQAIVTGQGPIANLDAHLSDPSGNN 237
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 155/263 (58%), Gaps = 28/263 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIF 60
T+ LSSP + K LSPS S + KS+PS PDR +
Sbjct: 4 STMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKY 57
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 58 LGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE + G G E VWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PELLARNGVKFG-EVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 236 TGEGPVENLAKHLSDPFANNLLT 258
TG+GP+ENLA HL+DP NN +
Sbjct: 234 TGKGPLENLADHLADPVNNNAWS 256
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 144/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 33 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFA 208
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 64 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLG 182
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EITDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 243 NDHLADPVANN 253
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 156/264 (59%), Gaps = 24/264 (9%)
Query: 10 LQVHQTLLLSSPLLSSPRRKPPLLPSLS-------------PSPSPPLTKSSPSGMVSPD 56
+ T+ LSSP L+ K L P+++ S + SS S PD
Sbjct: 1 MATSSTMALSSPSLAGQAVK--LAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPD 58
Query: 57 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 116
R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 59 RVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 115
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 173
G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 116 GCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMG 174
Query: 174 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 175 AVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 234
Query: 232 QAYVTGEGPVENLAKHLSDPFANN 255
QA VTG+GP+ENLA HL+DP NN
Sbjct: 235 QAIVTGKGPLENLADHLADPVNNN 258
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 156/255 (61%), Gaps = 20/255 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGL 65
T+ LSSP+++ +P L + + P P + SP DR ++L G
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSP--WYGADRVLYL--GP 60
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
L E P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA G + PE
Sbjct: 61 LS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 119
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
+ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 120 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK GRLAMF+M GFF+QA VTG+GP
Sbjct: 179 GPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFFVQAIVTGKGP 238
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 239 LENLADHLADPVNNN 253
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 145/220 (65%), Gaps = 11/220 (5%)
Query: 43 PLTKSSP--SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
P +K+S S P+R +FL G E P YLTGE PGDYG+D GLS P+ F +Y
Sbjct: 23 PASKASTPDSFWYGPERPLFL--GAFT-GEPPSYLTGEFPGDYGWDTAGLSADPETFKRY 79
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
+ ELIHARWAMLGA G I PE +G G EAVWFK GA + L+Y G + +
Sbjct: 80 RELELIHARWAMLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSNLVH 138
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 215
+ A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD F+ LKVKE
Sbjct: 139 AQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSELKVKE 198
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
IKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 199 IKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNN 238
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 46 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK GA + L+Y G I + A
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILA 161
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 162 IWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 221
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 222 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 155/254 (61%), Gaps = 16/254 (6%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTK------SSPSGMVSPDRRIFLPEGLL 66
T+ LSSP L+ K P P + + + K SS S PDR +L
Sbjct: 4 STMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 137/209 (65%), Gaps = 14/209 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 15 PDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 72
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----E 168
A G I PE K G G EAVWFK G+ + LNY G NLV A +IA +
Sbjct: 73 ALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIATLAFQ 128
Query: 169 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 129 VVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 188
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP++NL HL++P A N
Sbjct: 189 FGFFVQAIVTGKGPIQNLDDHLANPTAVN 217
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 136/206 (66%), Gaps = 7/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 30 PDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 87
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++VL
Sbjct: 88 ALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVL 147
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 148 MGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 207
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 208 YVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 153/258 (59%), Gaps = 22/258 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP L+ K L P+ S + P T S S PDR +L
Sbjct: 4 STMALSSPSLAGKAVK--LGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 11/226 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + S +T SP PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 33 SMRKTASKTVTSGSP--WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA
Sbjct: 147 NPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 143/215 (66%), Gaps = 11/215 (5%)
Query: 48 SPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 105
+PSG PDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 42 APSGSPWYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
Query: 106 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 163
IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G I +
Sbjct: 99 IHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIL 157
Query: 164 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR
Sbjct: 158 AIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 217
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 138/206 (66%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 65 PDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVL 171
A G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L
Sbjct: 122 ALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVIL 180
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 181 MGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGF 240
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 241 FVQAIVTGKGPIENLADHLADPVNNN 266
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 51 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 108 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 166
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 226
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 227 RLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 134/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 43 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 100
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G I PE K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 101 ALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVIL 159
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 160 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 219
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP++NL HLS+P NN
Sbjct: 220 FVQAIVTGKGPIQNLDDHLSNPTVNN 245
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 145/226 (64%), Gaps = 11/226 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + + P++ SSP PDR +L E P YLT E PGDYG+D GLS P
Sbjct: 34 SMRKTAAKPVSSSSP--WYGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADP 88
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 148 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 143/215 (66%), Gaps = 11/215 (5%)
Query: 48 SPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 105
+PSG PDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 42 APSGSPWYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 98
Query: 106 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 163
IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G I +
Sbjct: 99 IHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIL 157
Query: 164 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR
Sbjct: 158 AIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 217
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 136/207 (65%), Gaps = 11/207 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAMLG
Sbjct: 48 PDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLG 103
Query: 115 AAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 170
G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V + +
Sbjct: 104 TLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQAL 162
Query: 171 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+M G
Sbjct: 163 LMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFG 222
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANN 255
+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 223 YFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 136/207 (65%), Gaps = 11/207 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAMLG
Sbjct: 48 PDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLG 103
Query: 115 AAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 170
G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V + +
Sbjct: 104 TLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQAL 162
Query: 171 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+M G
Sbjct: 163 LMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFG 222
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANN 255
+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 223 YFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 136/206 (66%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PDRPQFLGP---FSGDTPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 96
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+G E+VWFK G+ + L+Y G + + A++ ++VL
Sbjct: 97 ALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF
Sbjct: 157 MGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+EN A+H++DPF+ N
Sbjct: 217 FVQAVVTGKGPIENWAEHVADPFSVN 242
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 151/245 (61%), Gaps = 10/245 (4%)
Query: 17 LLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP-SGMVSPDRRIFLPEGLLDRSEIPEYL 75
L S ++ R+ + + P S+P S P+R +FL G E P YL
Sbjct: 5 LAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFL--GAFT-GEPPSYL 61
Query: 76 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 135
TGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE +G G EA
Sbjct: 62 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-EA 120
Query: 136 VWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKL 190
VWFK GA + L+Y G + + A++ +++L+G E YR+ G E DKL
Sbjct: 121 VWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKL 180
Query: 191 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 250
+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++
Sbjct: 181 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLAN 240
Query: 251 PFANN 255
P NN
Sbjct: 241 PGTNN 245
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 152/254 (59%), Gaps = 16/254 (6%)
Query: 14 QTLLLSSPLLSSPRRK-----PPLLPSLSPSPSPPLTKSSPSG--MVSPDRRIFLPEGLL 66
T+ LSSP + K P L+ + S KS SG PDR +L
Sbjct: 4 STMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP--- 60
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGG 179
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+KSS S DR +L E P YL GE GDYG+D GLS P+ F++ + E
Sbjct: 42 SKSSDSIWYGADRPKYLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELE 98
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IHARWAMLGA G + PE K G G EAVWFK GA + L+Y G + +
Sbjct: 99 VIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 157
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YR+ G D+ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 158 LAIWASQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG 217
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 253
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 156/253 (61%), Gaps = 17/253 (6%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSP----SPSPPLTKSSPSG--MVSPDRRIFLPEGLLD 67
++ LSSP L+ K L PS S +TK + SG PDR +L
Sbjct: 4 SSMALSSPSLAGKAVK--LSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP---F 58
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 59 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+L+ L+Y G I + A+ A +++L+G E YRI G
Sbjct: 119 GVKFG-EAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 177
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 178 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 237
Query: 243 NLAKHLSDPFANN 255
NLA HLSDP +N
Sbjct: 238 NLADHLSDPVNSN 250
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 147/226 (65%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S PDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 27 TMRKTAAKPKPAASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 83
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 84 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 142
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 143 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 202
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 203 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 TATKAKPVSSGSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 92
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 151
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 139/219 (63%), Gaps = 12/219 (5%)
Query: 46 KSSPSG----MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
KS+P+ P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+
Sbjct: 30 KSAPASSGIEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYR 87
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-- 159
ELIHARWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 88 ELELIHARWAMLGALGCLTPELLAKNGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHA 146
Query: 160 -NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
N+V + +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEI
Sbjct: 147 QNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEI 206
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GPV+NL HLS+P NN
Sbjct: 207 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTVNN 245
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 155/253 (61%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSP---SPSPPLTKSSPSG--MVSPDRRIFLPEGLLD 67
T+ LSSP L+ K P P LS S +KS SG PDR +L
Sbjct: 4 STMALSSPSLAGQAIKLSPSTPELSGGRISMRKAASKSVSSGSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++ GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 145/229 (63%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 36 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 92
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 93 ETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 151
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 152 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 211
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 212 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 260
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 65 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 183
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 244 NDHLADPVANN 254
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 144/217 (66%), Gaps = 11/217 (5%)
Query: 46 KSSPSGMV--SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
K+S SG + DR ++L G S P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 KASTSGSIWYGADRPLYL--GPFSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
ELIHARWAMLGA G + PE K G G EAVWFK G+ + L+Y G +
Sbjct: 99 ELIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQS 157
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G ++ED L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 158 ILAIWAFQVVLMGAVEGYRVAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELKVKELKN 217
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPTVNN 254
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 136/206 (66%), Gaps = 7/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G ++P YLTG+ PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 30 PDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 87
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++VL
Sbjct: 88 ALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVL 147
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 148 MGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 207
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 208 YVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 41 TVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I +
Sbjct: 98 VIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSI 156
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNG
Sbjct: 157 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNG 216
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 154/254 (60%), Gaps = 16/254 (6%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTK------SSPSGMVSPDRRIFLPEGLL 66
+ LSSP L+ K P P + + + K SS S PDR +L
Sbjct: 4 SAMALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 151/260 (58%), Gaps = 27/260 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLS--------------PSPSPPLTKSSPSGMVSPDRRIF 60
T+ LSSP L+ K L PS S P SP PDR +
Sbjct: 4 TMALSSPSLAGKAVK--LAPSASDVLGEGRVTMRKSTAKAKPAAASGSP--WYGPDRVKY 59
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 60 LGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 116
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE + G G EAVWFK GA + L+Y G I + A+ A +++L+G E
Sbjct: 117 PELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 175
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 176 YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235
Query: 236 TGEGPVENLAKHLSDPFANN 255
TG+GP+ENLA HL+DP NN
Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIF 60
M+A + L ++ P S R + + + + P++ SP PDR +
Sbjct: 1 MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSP--WYGPDRVKY 58
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L E P YLTGE PGDYG+D GLS P F+K + E+IH RW MLGA G +
Sbjct: 59 LGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVF 115
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE F + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 116 PELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YR+ G ++ D L+PGG FDPLGLA DP+ FA L+VKEIKNGRLAMF+M GFF+QA V
Sbjct: 175 YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 236 TGEGPVENLAKHLSDPFANN 255
TG+GP+ENLA HL+DP NN
Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 FASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L++ G I
Sbjct: 104 EVIHSRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDHLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 11/218 (5%)
Query: 45 TKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
TKS SG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 TKSVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 156 SILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLTDPVNNN 253
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 245 ADHLADPVNNN 255
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 170 ILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 46 SSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 161
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 221
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 222 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 127 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 185
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 186 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 246 NDHLADPVANN 256
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 142/217 (65%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P+ + PDR +L +IP YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPTSIWYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 155/262 (59%), Gaps = 28/262 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ + L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANNLLT 258
G+GP+ENLA HL+DP NN +
Sbjct: 235 GKGPLENLADHLADPVNNNAWS 256
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 152/254 (59%), Gaps = 16/254 (6%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTK------SSPSGMVSPDRRIFLPEGLL 66
T+ LSSP + K P P L + + K SS S PDR +L
Sbjct: 4 STMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP--- 60
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGG 179
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 46 SSDSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK GA + L+Y G + + A
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 161
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRL
Sbjct: 162 IWACQVILMGAIEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRL 221
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 222 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 153/253 (60%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL-----SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSS L+ K P P L S + T SS S PDR +L
Sbjct: 4 STMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTASKTVSSGSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 170 ILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/206 (53%), Positives = 133/206 (64%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE K G G EAVWFK GA + LNY G I N+V + ++VL
Sbjct: 98 ALGIVTPELLQKNGVQFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GF
Sbjct: 157 LGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP++NL HLS+P NN
Sbjct: 217 FVQAIVTGKGPIQNLDDHLSNPGVNN 242
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 135/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 98 ALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENL HL++P NN
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P +LTGE PGDYG+D GLS P+ F+K + E
Sbjct: 51 ASASTSPWYGPDRVLYLGP---FSGEPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 108 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 166
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG 226
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 136/204 (66%), Gaps = 9/204 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 15 PDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 72
Query: 115 AAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 170
A G + PE K+ G +CG E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 73 ALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 131
Query: 171 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 132 LMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 191
Query: 229 FFLQAYVTGEGPVENLAKHLSDPF 252
F++QA VTG+GP+EN A H++DPF
Sbjct: 192 FYVQAIVTGKGPIENWADHVADPF 215
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLG 183
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 244 ADHLADPVNNN 254
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 143/225 (63%), Gaps = 11/225 (4%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
+ + PL+ SP PDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 40 TKAKPLSSGSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 156
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 157 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
K IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 214 KHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 135/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 98 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENL HL++P NN
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/206 (52%), Positives = 138/206 (66%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 65 PDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 121
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVL 171
A G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L
Sbjct: 122 ALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVIL 180
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M GF
Sbjct: 181 MGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGF 240
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 241 FVQAIVTGKGPIENLADHLADPVNNN 266
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 141/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+I
Sbjct: 45 SSGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 135/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 98 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENL HL++P NN
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 143/219 (65%), Gaps = 11/219 (5%)
Query: 44 LTKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
+TK + SG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNR 93
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 152
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+
Sbjct: 153 QSILAIWATQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKEL 212
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 153/254 (60%), Gaps = 17/254 (6%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKS--------SPSGMVSPDRRIFLPEGLL 66
T+ LSSP + K L +L + K+ S S DR ++L G L
Sbjct: 5 TMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL--GPL 62
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 63 S-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 122 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 181 PLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 242 ENLAKHLSDPFANN 255
ENLA H++DP NN
Sbjct: 241 ENLADHITDPVNNN 254
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 138/210 (65%), Gaps = 9/210 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 50 ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 106
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + + A
Sbjct: 107 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 165
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 166 IWACQVILMGAVEGYRIAGGPLREVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRL 225
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
AMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 226 AMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLIHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 135/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 98 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENL HL++P NN
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 141/219 (64%), Gaps = 11/219 (5%)
Query: 44 LTKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
+ KS+PS PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 23 VAKSAPSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNR 79
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 80 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 138
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEI
Sbjct: 139 QSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEI 198
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 237
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 155/257 (60%), Gaps = 21/257 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPS----------LSPSPSPPLTKSSPSGMVSPDRRIFLPE 63
++ LSSP L+ K L PS + S + SS S PDR +L
Sbjct: 4 SSMALSSPTLAGKPVK--LTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 61
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 62 ---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 180
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 119 LSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 177
Query: 181 TNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 178 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 239 GPVENLAKHLSDPFANN 255
GP+ENLA HL+DP NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 144/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 29 TMRKTAAKPKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 85
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 86 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 144
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 145 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 204
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 205 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 250
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 153/258 (59%), Gaps = 22/258 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP L+ K L PS S + P SS S PDR +L
Sbjct: 4 STMALSSPSLAGKAVK--LAPSASELLGVGRVSMRKTGGRPKPVSSGSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 154/258 (59%), Gaps = 22/258 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRRIFLP 62
T+ LSSP L+ K L PS S + P SS S PDR +L
Sbjct: 4 STMALSSPSLAGQAIK--LAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLG 61
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 118
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 179
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 177
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 125 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 183
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Query: 245 AKHLSDPFANN 255
A HLSDP NN
Sbjct: 244 ADHLSDPVNNN 254
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 142/226 (62%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + P SS S PDR +L E P YLTGE GDYG+D GLS P
Sbjct: 33 SMRKTAGKPKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADP 89
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IHARWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 154/254 (60%), Gaps = 16/254 (6%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTK------SSPSGMVSPDRRIFLPEGLL 66
+ LSSP L+ K P P + + + K SS S PDR +L
Sbjct: 4 SAMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/257 (47%), Positives = 159/257 (61%), Gaps = 18/257 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL---TKSSPSGM-VSPDRRIFLPEGLLD 67
+HQT +S L ++PRR + + KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDDVVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLGP 58
Query: 68 RSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
SE P YLTGE PGDYG+D GLS P+ F++ + ELIH+RWAMLGA G + PE +K
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSK 118
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 119 NGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGG 177
Query: 184 LDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 178 PLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
Query: 242 ENLAKHLSDPFANNLLT 258
ENL H++DP ANN +
Sbjct: 238 ENLFDHVTDPVANNAWS 254
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSGSLWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRL
Sbjct: 161 IWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SSP DR ++L G L + P YLTGE PGDYG+D GLS P+
Sbjct: 37 TAAKAKPVSSSSP--WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 150
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 144/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + P +S S DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 31 TMRKTAGKPKPAASGSPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 147 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GPVENLA HL+DP NN
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 252
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 51 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 108 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 166
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 167 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 226
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RL MF+M GFF+QA VTG+GP+E+LA HL+DP NN
Sbjct: 227 RLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNN 262
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 143/217 (65%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQS 155
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E DKL+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 156 ILAIWASQVVLMGLIEGYRVGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKN 215
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 127 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 185
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 186 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 246 NDHLADPVANN 256
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 139/218 (63%), Gaps = 9/218 (4%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P T S S PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 7 PKTVQSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 63
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 64 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 122
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 123 SILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIK 182
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 143/217 (65%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQS 155
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 156 ILAIWACQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKN 215
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 46 SSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 161
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 221
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 222 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +LP GLLD ++IP Y+ GE+ GDYGYDP GL K KY+ YE++H RWAMLG
Sbjct: 61 PDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAMLG 119
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVG 173
G ++PE G AVW+ +GA+LLD TL + G P+ L AVI E+ +
Sbjct: 120 VVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFF 179
Query: 174 GAEYYRITN----GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
E YR G L D L+PGG FDPLGLA DP + LKVKEIKNGRLAM A LG
Sbjct: 180 LIENYRYQQDGPWGTGL-DPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLG 238
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
F +Q +VT EGP N +KHL+DPF N LT++ +ER PTL
Sbjct: 239 FVVQYFVTKEGPYANWSKHLADPFGYNFLTILGSGSERVPTL 280
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 142/218 (65%), Gaps = 11/218 (5%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ SP PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 44 PVSSGSP--WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 98
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 99 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 157
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 158 SILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELK 217
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 137/214 (64%), Gaps = 9/214 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G +P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLG
Sbjct: 34 PDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIEVIHARWAMLG 91
Query: 115 AAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 170
A G + PE GA + G AVWFK GA + + LNY G I+ +V ++ ++V
Sbjct: 92 ALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLTQLV 151
Query: 171 LVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
++G AE YR +E D L+PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 152 IMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMFSMF 211
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
GFF+QA +TG+ P+ENLA HL+DP N V +
Sbjct: 212 GFFVQALITGKSPLENLADHLADPSTANGFAVAT 245
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 140/219 (63%), Gaps = 11/219 (5%)
Query: 42 PPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
P SSP PDR +L E P YL+GE PGDYG+D GLS P+ F+K +
Sbjct: 8 PKTVSSSP--WYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNR 62
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G +
Sbjct: 63 ELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHA 121
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A +++L+G E YRI G ++ED L+PGG FDPLGLA DP+ FA LKVKEI
Sbjct: 122 QSILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELKVKEI 181
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 182 KNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNN 220
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP DR ++L G L E P YLTGE PGDYG+D GLS P+
Sbjct: 37 TAAKAKPVSSGSP--WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 FAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 150
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 134/191 (70%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 62 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 122 KFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLG 180
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 245 AKHLSDPFANN 255
+ HL+DP ANN
Sbjct: 241 SDHLADPVANN 251
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 143/225 (63%), Gaps = 9/225 (4%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
S + SS S PDR +L E P YLTGE PGDYG+D GLS P+ FS
Sbjct: 3 SATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFS 59
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 156
K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 60 KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 118
Query: 157 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 119 VHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 178
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 179 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 144/229 (62%), Gaps = 9/229 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + +P S S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 21 SMRKTAAPKKVAPSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 77
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 78 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 136
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 137 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 196
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA L+DP ANN +
Sbjct: 197 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANNAWS 245
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KN
Sbjct: 170 ILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKN 229
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G I PE +K G
Sbjct: 63 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV 122
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 123 QFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLG 181
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 182 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241
Query: 245 AKHLSDPFANN 255
A H++DP ANN
Sbjct: 242 ADHIADPVANN 252
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/206 (53%), Positives = 139/206 (67%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 52 PDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 109 ALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 167
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 227
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FVQAIVTGKGPLENLADHLADPVNNN 253
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+I
Sbjct: 11 SSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 67
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A
Sbjct: 68 HSRWAMLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 126
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 127 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 186
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 187 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 137/212 (64%), Gaps = 9/212 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 48 VSASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 104
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 105 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 163
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 164 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 223
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 224 RLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 153/251 (60%), Gaps = 14/251 (5%)
Query: 15 TLLLSSPLLSSPRRKP-PLLPSLSPSPSPPLTKSSPSGMVSP----DRRIFLPEGLLDRS 69
T+ LSS + K P L + + K+ P SP DR ++L G L
Sbjct: 5 TMALSSSTFAGKAVKNLPALGEARITMRKTVAKAKPVSSGSPWYGSDRVLYL--GPLS-G 61
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 180
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 241 ADHLADPVNNN 251
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 142/217 (65%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEVLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HLSDP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLSDPVANN 253
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 145/224 (64%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP DR ++L G L + P YLTGE PGDYG+D GLS P+
Sbjct: 58 TAAKAKPVSSGSP--WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPET 112
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 113 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 171
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 172 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 231
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 232 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 275
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S DR ++L G L S P YLTGE PGDYG+D GLS P
Sbjct: 31 TMRKTAAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 147 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 44 SSGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 101 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILA 159
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRL 219
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 160/255 (62%), Gaps = 20/255 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ + S KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 67 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 183 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 241 VENLAKHLSDPFANN 255
+ENL H++DP ANN
Sbjct: 237 IENLFDHVADPVANN 251
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 134/191 (70%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 71 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 130
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 131 KFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLG 189
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 190 EVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 249
Query: 245 AKHLSDPFANN 255
+ HL+DP ANN
Sbjct: 250 SDHLADPVANN 260
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+I
Sbjct: 45 SSGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 161 IWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHIADPINNN 254
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 9 VAASIDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 65
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINL 161
E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + I
Sbjct: 66 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQS 124
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 125 ILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKN 184
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 185 GRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 130/189 (68%), Gaps = 6/189 (3%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 61 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 120
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G ++
Sbjct: 121 G-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEI 179
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 180 VDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 239
Query: 247 HLSDPFANN 255
HL+DP NN
Sbjct: 240 HLADPVNNN 248
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 141/221 (63%), Gaps = 11/221 (4%)
Query: 43 PLTKSSP-SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
P S+P S PDR +FL G L E P YLTGE PGDYG+D G S P F++Y+
Sbjct: 32 PSKGSTPDSAWYGPDRPLFL--GSLS-GEPPSYLTGEFPGDYGWDTAGFSADPTTFARYR 88
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGAN-CGPEAVWFKTGALLLDGNTLNYFGKN--IP 158
E+IHARWA+LGA G + PE + G G A+WFK G+ + LNY G I
Sbjct: 89 TIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIH 148
Query: 159 INLVFAVIA-EIVLVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
+ A +A +++++G AE +R G++ D L+PGGPFDPLGLA DPD FA LKVK
Sbjct: 149 AQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAELKVK 208
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
EIKNGRLAMFA GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 209 EIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNN 249
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 143/220 (65%), Gaps = 10/220 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
K++P + PDR FL + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 VKAAPQSIWYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IHARWAMLGA G I PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 EVIHARWAMLGALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 155
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 156 ILAIWATQVVLMGFIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKN 215
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP ANN +
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNAWS 255
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 137/212 (64%), Gaps = 9/212 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 48 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 104
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 105 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 163
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 164 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 223
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 224 RLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+I
Sbjct: 45 SSGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 161 IWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHIADPINNN 254
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +LP GLLD ++IP Y+ GE+ GDYGYDP GL K KY+ YE++H RWAMLG
Sbjct: 68 PDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAMLG 126
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVG 173
G ++PE G AVW+ +GA+LLD TL + G P+ L AVI E+ +
Sbjct: 127 VVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFF 186
Query: 174 GAEYYRITN----GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
E YR G L D L+PGG FDPLGLA DP + LKVKEIKNGRLAM A LG
Sbjct: 187 LIENYRYQQDGPWGTGL-DPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLG 245
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
F +Q +VT EGP N +KHL+DPF N LT++ +ER PTL
Sbjct: 246 FVVQYFVTKEGPYANWSKHLADPFGYNFLTILGSGSERVPTL 287
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 137/209 (65%), Gaps = 13/209 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 30 PDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 87
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++VL
Sbjct: 88 ALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVL 147
Query: 172 VGGAEYYRIT-----NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+G E YR+ GLD+ LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 148 MGLIEAYRVNGGPLGKGLDV---LHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 204
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 205 FGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 157/263 (59%), Gaps = 32/263 (12%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG-------LL 66
T+ LSSP + K LSP+ S L SG V+ + + P+G
Sbjct: 4 STMALSSPAFAGKAVK------LSPAASEVLG----SGRVTMRKTVAKPKGPSGSPWYGS 53
Query: 67 DR--------SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 118
DR E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G
Sbjct: 54 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGC 113
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 175
+ PE + G G EAVWFK G+ + L+Y G + + A+ A +++L+G
Sbjct: 114 VFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAV 172
Query: 176 EYYRIT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
E YR+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+Q
Sbjct: 173 EGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 232
Query: 233 AYVTGEGPVENLAKHLSDPFANN 255
A VTG+GP+ENLA HL+DP NN
Sbjct: 233 AIVTGKGPIENLADHLADPVNNN 255
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 180
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 241 NDHLADPVANN 251
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 145/224 (64%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP DR ++L G L + P YLTGE PGDYG+D GLS P+
Sbjct: 37 TAAKAKPVSSGSP--WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 150
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 161 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 131/193 (67%), Gaps = 7/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN--- 182
E VW+K GA +L L+Y GK ++ +V + +++L+G AE YR
Sbjct: 69 FTF-QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGSAP 127
Query: 183 GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
G+D DKL+PGGPFDPL A DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 128 GVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 187
Query: 243 NLAKHLSDPFANN 255
NL HL+ P+ANN
Sbjct: 188 NLNDHLASPYANN 200
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 142/214 (66%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 81 SSGSPWYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 137
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A
Sbjct: 138 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 196
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 197 IWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 256
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 257 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 159/255 (62%), Gaps = 20/255 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ + S KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDD-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 67 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
SE P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILS 117
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 183 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA V G+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVRGKGP 236
Query: 241 VENLAKHLSDPFANN 255
+ENL H++DP ANN
Sbjct: 237 IENLFDHVTDPVANN 251
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 11/218 (5%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ SSP PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 6 PVSSSSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 61 LEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 119
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+K
Sbjct: 120 SILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELK 179
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 180 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 153/262 (58%), Gaps = 30/262 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSP----SGMVSPDRR 58
T+ LSSP + K LSPS S +TK+ P S PDR
Sbjct: 4 STMALSSPSFAGNAVK------LSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRV 57
Query: 59 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 118
+L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G
Sbjct: 58 KYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 175
+ PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G
Sbjct: 115 VFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAI 173
Query: 176 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 174 EGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 234 YVTGEGPVENLAKHLSDPFANN 255
VTG+GP+ENL HL+DP NN
Sbjct: 234 IVTGKGPLENLVDHLADPVNNN 255
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 62
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 63 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 121
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 122 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 181
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 9/218 (4%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P +S S PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 37 PKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 93
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I
Sbjct: 94 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 152
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 153 SILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 212
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ S + P++ SSP P+R +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 TASKAKPVSSSSP--WYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 92
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNP 151
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 139/206 (67%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 53 PDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 109
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 110 ALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 168
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA H++DP NN
Sbjct: 229 FVQAIVTGKGPLENLADHIADPVNNN 254
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
T S+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 TASTPKSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 96 LEVIHGRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 154
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 155 SILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIK 214
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 136/214 (63%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 32 SSGVEFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 89
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G + PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 90 HARWAMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 148
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 149 TLAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRL 208
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 209 AMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+I
Sbjct: 45 SSGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 4 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 60
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 61 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 119
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 120 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 179
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 180 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GPVENL
Sbjct: 183 EGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENL 242
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 243 FDHLADPVANN 253
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 144/231 (62%), Gaps = 16/231 (6%)
Query: 41 SPPLTKSSPSGMVSPDRRIFLPEGLL---DR--------SEIPEYLTGEVPGDYGYDPFG 89
S P+ K + M ++ P+ + DR + P YLTGE PGDYG+D G
Sbjct: 12 SKPVNKKMVTSMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTAG 71
Query: 90 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 149
LS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWFK G+ +
Sbjct: 72 LSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGG 131
Query: 150 LNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKD 204
L+Y G + + A++ ++VL+G E YR+ G E D L+PG FDPLGLA D
Sbjct: 132 LDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADD 191
Query: 205 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
PD FA LK+KEIKNGRLAMF+M GF++QA VTG+GP+EN A+H+++PF+ N
Sbjct: 192 PDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIENWAEHVANPFSVN 242
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 62
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 63 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 121
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 122 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 181
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 161 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE + G
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 183
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Query: 245 AKHLSDPFANN 255
A H++DP NN
Sbjct: 244 ADHIADPVNNN 254
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 152/254 (59%), Gaps = 17/254 (6%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKS--------SPSGMVSPDRRIFLPEGLL 66
T+ LSSP + K L +L + K+ S S DR ++L G L
Sbjct: 5 TMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL--GPL 62
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 63 S-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A + VL+G E YRI G
Sbjct: 122 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAGG 180
Query: 184 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 181 PLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 242 ENLAKHLSDPFANN 255
ENLA H++DP NN
Sbjct: 241 ENLADHITDPVNNN 254
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 12 SSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 68
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 69 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 127
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 128 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 187
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 188 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 136/214 (63%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 31 SSGVEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 88
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G + PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 89 HARWAMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 147
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 148 TLAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRL 207
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 208 AMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 142/214 (66%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 44 SSGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A
Sbjct: 101 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA +KVKE+KNGRL
Sbjct: 160 IWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRL 219
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 136/214 (63%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 32 SSGVEFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 89
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G + PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 90 HARWAMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 148
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 149 TLAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRL 208
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 209 AMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ + PS PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 19 VKSAPPSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 75
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 76 EVIHCRWAMLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 134
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 135 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKN 194
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 195 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 231
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 142/214 (66%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 44 SSGSPWYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A
Sbjct: 101 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 160 IWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 219
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 149/252 (59%), Gaps = 24/252 (9%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ R+ S+S S SP PDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSP---------WYGPDRVLYLGP- 66
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 67 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI
Sbjct: 125 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 183
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 184 GGPLGXVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 240 PVENLAKHLSDP 251
P+ENLA HL+DP
Sbjct: 244 PIENLADHLADP 255
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 32 TMRKTAAKPKPAASGSPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 148 NPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 143/226 (63%), Gaps = 10/226 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
S +T++S PDR FL G +P YL GE PGDYG+D GLS P+
Sbjct: 22 SAKARKQVTRASVE-FYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPET 78
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGK 155
F++Y+ ELIH+RWA+LGA G + PE + GA + G AVWFK GA + + LNY G
Sbjct: 79 FARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGN 138
Query: 156 NIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFA 209
I+ +V ++A+IVLVG AE YR ++ DKL+PGG FDPLGL DP+ A
Sbjct: 139 PQLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKLYPGGFFDPLGLGDDPEALA 198
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLA ++ GFF+QA VTG+GP+ENL HL+DP+ NN
Sbjct: 199 ELKVKEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T S P+R ++L G L S P YLTGE PGDYG+D GLS P+ F +Y+ E
Sbjct: 46 TSERLSQFYGPERALWL--GPLSGS-APSYLTGEFPGDYGWDSAGLSSDPETFKRYRELE 102
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
LIHARWAMLGA G + PE K G E VWFK GA + L+Y G + +
Sbjct: 103 LIHARWAMLGALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSI 161
Query: 163 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKN 218
A +A +++L+G E +R+ G E DKLHPGGP FDPL LA+DPD FA LKVKEIKN
Sbjct: 162 LATLACQVILMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNN 258
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 42 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 98
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A
Sbjct: 99 HSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 157
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 158 IWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRL 217
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 4 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 60
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 61 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 119
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 120 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 179
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 180 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR FL + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G E+VWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 34 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 90
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A
Sbjct: 91 HSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 149
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 150 IWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRL 209
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP DR ++L G L E P YLTGE PGDYG+D GLS P+
Sbjct: 4 TAAKAKPVSSGSP--WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPET 58
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 59 FAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 117
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 118 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 177
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + + P +S S PDR +L E P YLTGE GDYG+D GLS P
Sbjct: 2 SMRKTAAKPKPAASGSPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADP 58
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IHARWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 59 ETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 117
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 118 NPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 177
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
K S S PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 39 FAKPSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 95
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G +
Sbjct: 96 EVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPGLVHAQS 154
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 155 ILAIWACQVILMGAVEGYRIGGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 214
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 142/219 (64%), Gaps = 11/219 (5%)
Query: 42 PPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
P + SP PDR ++L G L E P YLTGE GDYG+D GLS P+ F+K +
Sbjct: 41 PKVASGSP--WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNR 95
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 96 ELEVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHA 154
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+
Sbjct: 155 QSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEL 214
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 155/259 (59%), Gaps = 21/259 (8%)
Query: 12 VHQTLLLSSPLLSS------PRRKPPLLP----SLSPSPSPPLTKSSPSGMVSPDRRIFL 61
+ T+ LSSP L+ P LL S+ + + P++ SP DR +L
Sbjct: 1 MASTMALSSPSLAGKAVKLGPSAASELLGNGRISMRKTIAKPVSSGSP--WYGADRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK GA + L+Y G + + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA L+DP NN
Sbjct: 235 GKGPLENLADPLADPVNNN 253
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 23 SSGVEFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELI 80
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G + PE K G G EAVWFK GA + LNY G I N+V
Sbjct: 81 HARWAMLGALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVA 139
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 140 TLAVQVILLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRL 199
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+ GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 200 AMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNN 233
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 148/252 (58%), Gaps = 14/252 (5%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTK-----SSPSGMVSPDRRIFLPEGLLDR 68
T+ LSS + + P L + + K SS S PDR +L
Sbjct: 4 STMTLSSSFIGKAVQLAPTGNDLMGNGRVTMRKTGRQVSSGSPWYGPDRVKYLGP---FS 60
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 61 GEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 120
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 121 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL 179
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR AMF+M GFF+QA VTG+GP+EN
Sbjct: 180 GKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLEN 239
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 240 LADHLADPVNNN 251
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 245 ADHLADPVNNN 255
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 152/259 (58%), Gaps = 28/259 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPSG--MVSPDRRIFL 61
T+ LSSP + K LSPS S + KS+PS PDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFP 115
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 178
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 179 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+ GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFVQAIVT 234
Query: 237 GEGPVENLAKHLSDPFANN 255
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 143/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G +
Sbjct: 97 EVIHSRWAMLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 162 VFAVIA-EIVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G DL DKL+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 156 ILAIWACQVVLMGFVEGYRVGGGPLGEDL-DKLYPGGAFDPLGLADDPEAFAELKVKELK 214
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADPVANN 252
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 136/211 (64%), Gaps = 9/211 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 47 FASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 103
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 104 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 162
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 163 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 222
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
GRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 223 GRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 140/218 (64%), Gaps = 9/218 (4%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P +S S PDR +L E P YLTGE PGDYG+D GLS P F+K +
Sbjct: 37 PKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRE 93
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I
Sbjct: 94 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 152
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 153 SILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 212
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 157/260 (60%), Gaps = 17/260 (6%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIF 60
+S+ G + ++ LSS + S+ R ++ S P + SP PDR +
Sbjct: 6 LSSTFTGKVVPLNAFTELSSSVRSNGRV------TMRKSGKPAASSGSP--WYGPDRVKY 57
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
L E P YL GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G +
Sbjct: 58 LGP---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 177
PE ++ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E
Sbjct: 115 PELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEG 173
Query: 178 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
YRI G ++ D ++PGG FDPLGLA DP+ F+ LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIV 233
Query: 236 TGEGPVENLAKHLSDPFANN 255
TG+GP+ENLA HL+DP NN
Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 40 SSSSPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 96
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWF G+ + L+Y G + + A
Sbjct: 97 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILA 155
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 156 IWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 215
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 216 AMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 249
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSSSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G I PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA H+ DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 143/219 (65%), Gaps = 11/219 (5%)
Query: 44 LTKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
+TK + SG PDR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 93
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 152
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+
Sbjct: 153 QSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEL 212
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 141/221 (63%), Gaps = 11/221 (4%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ SP PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 43 PVSSGSP--WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 98 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA LKVKEIK
Sbjct: 157 SILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 217 NGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWS 257
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS + P+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELI
Sbjct: 35 SSGTSWYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELI 91
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
HARWAMLGA G I PE K G G EAVWFK GA + LNY G + I + A
Sbjct: 92 HARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILA 150
Query: 165 VIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+A +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 151 TLACQVILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRL 210
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 211 AMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 244
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 145/226 (64%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S DR ++L G L S P YLTGE PGDYG+D GLS P
Sbjct: 31 TMRKTAAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 147 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 252
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 36 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 95
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 96 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLG 154
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 155 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 214
Query: 245 AKHLSDPFANN 255
+ H++DP ANN
Sbjct: 215 SDHIADPVANN 225
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 11/218 (5%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ SP PDR +L G + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 44 PVSSGSP--WYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPETFAKNRE 98
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 99 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 157
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 158 SILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIK 217
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 142/219 (64%), Gaps = 9/219 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
+S S PDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+I
Sbjct: 44 ASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVI 100
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A
Sbjct: 101 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 159
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 219
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYV 258
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 18 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + + A
Sbjct: 75 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 133
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 134 IWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 193
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 194 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 9/218 (4%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P +S S PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 8 PKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 64
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I
Sbjct: 65 LEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 123
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 124 SILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 183
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 140/227 (61%), Gaps = 10/227 (4%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHAR
Sbjct: 132 SQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHAR 188
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 166
WAMLGA G + PE G G AVW+K GA + + LNY G I+ +V +
Sbjct: 189 WAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 248
Query: 167 AEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 222
+ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLA
Sbjct: 249 STLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLA 308
Query: 223 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269
M AMLGF++Q VT GPVENL HL+DP ANN+ + SG A A T
Sbjct: 309 MVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAAT 355
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/222 (49%), Positives = 137/222 (61%), Gaps = 10/222 (4%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHAR
Sbjct: 593 SQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHAR 649
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 166
WAMLGA G + PE G G AVW+K GA + + LNY G I+ +V +
Sbjct: 650 WAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 709
Query: 167 AEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 222
+ + ++G E YR G+ D L+PGGPFDPLGLA DPD A LKVKE+KNGRLA
Sbjct: 710 STLAIMGAVEAYRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLA 769
Query: 223 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
M AMLGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 770 MVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 811
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 143/237 (60%), Gaps = 17/237 (7%)
Query: 36 LSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 95
+S P PL K + PDR +L G +PEYLTGE+PGDYG+D GL P
Sbjct: 826 VSKDPFSPLNK-----LYGPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPA 877
Query: 96 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 155
++Y+ ++IH RWAMLG G PE N++G E VWFK GA + + LNY G+
Sbjct: 878 KLARYRVAQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQ 937
Query: 156 NIPIN---LVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQ 207
I+ +V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+
Sbjct: 938 PGLIHAQSVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEA 996
Query: 208 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
F LKVKE+KNGRLAM A+ GFF+Q +TG+GPVEN HL+DPF NN+ + G A
Sbjct: 997 FLELKVKEVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLTPGFA 1053
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 133/215 (61%), Gaps = 10/215 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
++ S P+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL
Sbjct: 354 ATGSKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQ 411
Query: 107 HARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLV 162
+ RWAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+
Sbjct: 412 NGRWAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLL 470
Query: 163 FAVIAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
++ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNG
Sbjct: 471 LTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNG 530
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 254
RLAM AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 531 RLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 160 NLVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
++V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+ F LKVK
Sbjct: 5 SVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLELKVK 63
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269
E+KNGRLAM A+ GF +Q +TG+GPVEN HL+DPF NNL + SG A A +
Sbjct: 64 EVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGFAMLATS 118
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G I + A+ A++VL+G E YR+ G
Sbjct: 124 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
H++DP ANN
Sbjct: 243 YDHVADPVANN 253
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 124 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
+ H++DP ANN
Sbjct: 243 SDHIADPVANN 253
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 142/225 (63%), Gaps = 11/225 (4%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
+ + P++ SP PDR +L E P YLTGE PGDYG+D LS P+ F+
Sbjct: 40 TKAKPVSSGSP--WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPETFA 94
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 156
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 157 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 213
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 144/226 (63%), Gaps = 11/226 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + S +T SP PDR +L E P Y TGE PGDYG+D GLS P
Sbjct: 33 SMRKTASKTVTSGSP--WYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA
Sbjct: 147 NPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+K+GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 207 ELKVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 137/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 46 SSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 161
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRL
Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKVKEIKNGRL 221
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 222 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 153/262 (58%), Gaps = 30/262 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSP----SGMVSPDRR 58
T+ LSSP + K LSPS S +TK+ P S PDR
Sbjct: 4 STMALSSPSFAGNAVK------LSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRV 57
Query: 59 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 118
+L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G
Sbjct: 58 KYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 175
+ PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G
Sbjct: 115 VFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAI 173
Query: 176 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 174 EGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 234 YVTGEGPVENLAKHLSDPFANN 255
VTG+GP++NL HL+DP NN
Sbjct: 234 IVTGKGPLDNLVDHLADPVNNN 255
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 33 TMRKTAAKPKPAASGSPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 145/226 (64%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P +S S DR ++L G L S P YLTGE PGDYG+D GLS P
Sbjct: 26 TMRKTAAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADP 82
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 83 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 141
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 142 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 201
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 202 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 247
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
+ H++DP ANN
Sbjct: 243 SDHINDPVANN 253
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGLIEGYRIGGGPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 180
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 241 NDHLADPVANN 251
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 125 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 183
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 243
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 244 LADHLADPVNNN 255
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S PDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHAR
Sbjct: 50 SAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHAR 106
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 167
WAMLGA G I PE K G E VWFK GA + L+Y G + + A +A
Sbjct: 107 WAMLGALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLA 165
Query: 168 -EIVLVGGAEYYRITNGLDLE--DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAM 223
+++L+G E YR+ G E DKLHPGG F DPLGLA+DPD FA LKVKEIKNGRLAM
Sbjct: 166 VQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAM 225
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
F+M GFF+QA VTG+GP+ NL +HL+ PF +N T
Sbjct: 226 FSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 125 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPL 183
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 243
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 244 LADHLADPVNNN 255
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 244 FDHLADPTANN 254
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 244 FDHLADPTANN 254
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 159/255 (62%), Gaps = 20/255 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ + S KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 67 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 183 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G E DK++P G FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 241 VENLAKHLSDPFANN 255
+ENL H++DP ANN
Sbjct: 237 IENLFDHVADPVANN 251
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 22 TVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 78
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G I +
Sbjct: 79 VIHSRWAMLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYLGNQSLIHAQSI 137
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA LKVKE+KNG
Sbjct: 138 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKELKNG 197
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 198 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 243 YDHLADPVANN 253
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 131/189 (69%), Gaps = 6/189 (3%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL+GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G ++
Sbjct: 126 G-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
ED ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 185 EDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSD 244
Query: 247 HLSDPFANN 255
HL+DP NN
Sbjct: 245 HLADPAVNN 253
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 244 FDHLADPTANN 254
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G I + AV A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
H++DP ANN
Sbjct: 243 FDHVADPVANN 253
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/206 (52%), Positives = 134/206 (65%), Gaps = 8/206 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 98 ALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GF
Sbjct: 157 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGF 216
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GPV+NL HL++P NN
Sbjct: 217 FVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 120 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 179 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 238
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 239 LADHLADPVTNN 250
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 141/215 (65%), Gaps = 11/215 (5%)
Query: 48 SPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 105
+PSG PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 43 APSGSQWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 106 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 163
IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 100 IHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 158
Query: 164 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGR
Sbjct: 159 AIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGR 218
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP++NLA H++DP NN
Sbjct: 219 LAMFSMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 138/222 (62%), Gaps = 10/222 (4%)
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHAR
Sbjct: 389 SQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHAR 445
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 166
WAMLGA G + PE G G AVW+K GA + + LNY G I+ +V +
Sbjct: 446 WAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 505
Query: 167 AEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 222
+ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLA
Sbjct: 506 STLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLA 565
Query: 223 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
M AMLGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 566 MVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 607
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 133/215 (61%), Gaps = 10/215 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
++ S P+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL
Sbjct: 150 ATGSKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQ 207
Query: 107 HARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLV 162
+ RWAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+
Sbjct: 208 NGRWAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLL 266
Query: 163 FAVIAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
++ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNG
Sbjct: 267 LTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNG 326
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 254
RLAM AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 327 RLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 93/149 (62%), Gaps = 7/149 (4%)
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL 184
G G AVW+K GA + + LNY G I+ +V ++ + ++G E YR G+
Sbjct: 3 GVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV 62
Query: 185 -DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GP
Sbjct: 63 GDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGP 122
Query: 241 VENLAKHLSDPFANNLLTVISGNAERAPT 269
VENL HL+DP ANN+ + SG A A T
Sbjct: 123 VENLTFHLADPSANNIFSFTSGFAMFAAT 151
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 38/181 (20%)
Query: 71 IPEYLTGEVPGDYG-----------YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 119
+ Y G GD+G +DP GL+ PD ++ + EL + R AM+ GF
Sbjct: 53 VEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFY 112
Query: 120 IPEAFNKFG---------ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 169
+ K G A+ ++ F +G + ++G N P L
Sbjct: 113 VQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWYGPNRPKWLG------- 165
Query: 170 VLVGGA--EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L GGA EY + D FD GLA DP F + E++NGR AM +L
Sbjct: 166 PLSGGAVPEYLKGEYAGDYG--------FDTAGLAADPKLFQRYRDAELQNGRWAMLGVL 217
Query: 228 G 228
G
Sbjct: 218 G 218
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
TK S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 41 TKKVGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK G+ + L Y G + +
Sbjct: 98 VIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSI 156
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA D + FA LKVKEIKNG
Sbjct: 157 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNG 216
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 149/252 (59%), Gaps = 24/252 (9%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ R+ S+S S SP PDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKAATKKVSVSASTSP---------WYGPDRVLYLGP- 66
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 67 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI
Sbjct: 125 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 183
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPL LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 184 GGPLGEVTDPIYPGGSFDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 240 PVENLAKHLSDP 251
P+ENLA HL+DP
Sbjct: 244 PIENLADHLADP 255
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 142/231 (61%), Gaps = 15/231 (6%)
Query: 46 KSSP-----SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y
Sbjct: 34 KSAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARY 90
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 91 REAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIH 150
Query: 161 ---LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKV 213
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKV
Sbjct: 151 AQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKV 210
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
KE+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 211 KELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 261
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 46 KSSP-----SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y
Sbjct: 269 KSAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARY 325
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 142
+ E+IHARWAMLGA G + PE G G AVW+K GA
Sbjct: 326 REAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 142/226 (62%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 62
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 63 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 121
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 122 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 181
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 182 EXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 127/192 (66%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G
Sbjct: 53 TATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNG 112
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + LNY G + I + A +A +++L+G E YR+ G
Sbjct: 113 VPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLVEGYRVNGGPA 171
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ N
Sbjct: 172 GEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIAN 231
Query: 244 LAKHLSDPFANN 255
L HLSDP NN
Sbjct: 232 LDAHLSDPSGNN 243
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 129/189 (68%), Gaps = 6/189 (3%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G ++
Sbjct: 127 G-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 185
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 186 VDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 247 HLSDPFANN 255
H++DP NN
Sbjct: 246 HITDPVNNN 254
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 120 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 179 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 238
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 239 LADHLADPVTNN 250
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPESIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G L DK++PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGWGL-DKIYPGGSFDPLGLADDPEAFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 132/203 (65%), Gaps = 7/203 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G +P YL GE PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 11 PDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 68
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++VL
Sbjct: 69 ALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVL 128
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D LHPG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF
Sbjct: 129 MGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 188
Query: 230 FLQAYVTGEGPVENLAKHLSDPF 252
++QA VTG+GP+EN A H++DPF
Sbjct: 189 YVQAIVTGKGPIENWADHVADPF 211
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 143/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
N RLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 214 NSRLAMFSMFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 129/192 (67%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 124 VKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEGLDPLYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 242
Query: 244 LAKHLSDPFANN 255
L HL+DP ANN
Sbjct: 243 LYDHLADPTANN 254
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 63 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGV 122
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 123 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGPLG 181
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GPVENL
Sbjct: 182 EGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENL 241
Query: 245 AKHLSDPFANN 255
HL+DP NN
Sbjct: 242 YDHLADPATNN 252
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 142/231 (61%), Gaps = 15/231 (6%)
Query: 46 KSSP-----SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y
Sbjct: 86 KSAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARY 142
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 143 REAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIH 202
Query: 161 ---LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKV 213
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKV
Sbjct: 203 AQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKV 262
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
KE+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 263 KELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 313
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 139/231 (60%), Gaps = 20/231 (8%)
Query: 46 KSSP-----SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
KS+P S PDR +L G L E+P YLTGE+PGDYG+D GL P ++Y
Sbjct: 321 KSAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARY 377
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
+ E+IHARWAML + PE G G AVW+K GA + + LNY G I+
Sbjct: 378 REAEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIH 432
Query: 161 ---LVFAVIAEIVLVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKV 213
+V ++ + ++G E YR G+ D D L+PGGPFDPLGLA DPD A LKV
Sbjct: 433 AQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKV 492
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
KE+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 493 KELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 543
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 60/77 (77%)
Query: 188 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GPVENL H
Sbjct: 2 DTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFH 61
Query: 248 LSDPFANNLLTVISGNA 264
L+DP +NN+ + SG A
Sbjct: 62 LADPSSNNIFSFTSGFA 78
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 47 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 106
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 107 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 165
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 166 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 225
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 226 LADHLADPVNNN 237
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 142/219 (64%), Gaps = 11/219 (5%)
Query: 44 LTKSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
+TK + SG PDR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNP 93
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 159
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 152
Query: 160 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 216
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+
Sbjct: 153 QSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEL 212
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 22 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 81
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 82 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAGGPLG 140
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 141 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 200
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 201 ADHLADPVNNN 211
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P Y TGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
+ H++DP ANN
Sbjct: 243 SDHINDPVANN 253
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G I PE + G
Sbjct: 76 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGV 135
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 136 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLG 194
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 195 EITDPLYPGNSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 254
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 255 ADHLADPVNNN 265
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 142/227 (62%), Gaps = 11/227 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 TATKAKPVSSGSP--WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 92
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNP 151
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A +++L+G E YR+ G + D L+PGG FDPLGLA+DP+ FA L
Sbjct: 152 SLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
KVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP NN +
Sbjct: 212 KVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWS 258
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR FL + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G E+VWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLA F+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLATFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
+S+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VRSAPESIWYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 LEVIHCRWAMLGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 157 SILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G I + A+ ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLG 182
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 243 ADHLADPVNNN 253
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A +VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATRVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 140/217 (64%), Gaps = 11/217 (5%)
Query: 46 KSSPSG--MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
K +PSG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 44 KVAPSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 100
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 101 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQS 159
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 160 ILAIWACQVVLMGAVEGYRIAGGPLGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKN 219
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL DP NN
Sbjct: 220 GRLAMFSMFGFFVQAIVTGKGPLENLADHLFDPVNNN 256
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 42 SSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 98
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A
Sbjct: 99 HSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 157
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 158 IWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRL 217
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+ P NN
Sbjct: 218 AMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 32 SSGVEFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 89
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G + PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 90 HARWAMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 148
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNG L
Sbjct: 149 TLAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGAL 208
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 209 AMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
T SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 22 TVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 78
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G I +
Sbjct: 79 VIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSI 137
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA LKVKEIKNG
Sbjct: 138 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNG 197
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 198 RLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 132/192 (68%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 77 VKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 135
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 136 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 195
Query: 244 LAKHLSDPFANN 255
L H++DP ANN
Sbjct: 196 LFDHVADPVANN 207
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L +IP YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G PE + G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
LTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 135 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE--DK 189
+VWF+ GA + L+Y G I+ + VI++++L+G E YR+ G E D
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++
Sbjct: 121 LYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVA 180
Query: 250 DPFANNLLT 258
DPF N +
Sbjct: 181 DPFTANAFS 189
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 130/192 (67%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 44 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 103
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 104 VKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 162
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 163 GEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 222
Query: 244 LAKHLSDPFANN 255
L HL+DP ANN
Sbjct: 223 LYDHLADPVANN 234
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YL GE GDYG+D GLS + F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRL
Sbjct: 161 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G E+VWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA +TG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 140/214 (65%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L G E P YLTGE PGDYG+D GLS P+ F++ + E+I
Sbjct: 42 SSGSPWYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 98
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A
Sbjct: 99 HSRWAMLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA 157
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D +PGG FDPLGLA DP+ FA LKVKE+KNGRL
Sbjct: 158 IWATQVILMGAVEGYRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAELKVKELKNGRL 217
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF++ GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 218 AMFSVFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 141/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF++ GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 148/250 (59%), Gaps = 24/250 (9%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG 64
LLG+ VH ++ R+ S+S S SP PDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSP---------WYGPDRVLYLGP- 66
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 67 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 124
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 181
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI
Sbjct: 125 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 183
Query: 182 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 184 GGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 240 PVENLAKHLS 249
P+ENLA HL+
Sbjct: 244 PIENLADHLA 253
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 138/218 (63%), Gaps = 9/218 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SPS PDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 37 TMRKSATKKFASESPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 93
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F++ + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 94 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 152
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 153 NPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 212
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H
Sbjct: 213 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 90
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 91 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 149
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 150 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 209
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 210 LADHLADPVNNN 221
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 143/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDY +D GLS P+ F++ +
Sbjct: 29 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRE 84
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 85 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 143
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 144 SILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 203
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 204 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPL 182
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 EFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPL 182
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 154/253 (60%), Gaps = 15/253 (5%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLSPSPSPPLTKS-----SPSGMVSPDRRIFLPEGLLD 67
T+ LSSP L+ K P L + + K+ S S PDR +L
Sbjct: 4 STMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G + + ++ A +++L+G E YR+ G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP 179
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D L+PGG FDPLGLA+DP++ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 135/221 (61%), Gaps = 8/221 (3%)
Query: 46 KSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 105
KS+ PDR +L + P YLTGE PGDYG+D GLS P+ F KY+ E+
Sbjct: 33 KSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEV 89
Query: 106 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLV 162
IHARWA+LGA G + PE + + E VWFK GA + L+Y G I N+V
Sbjct: 90 IHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIV 149
Query: 163 FAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
+ ++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGR
Sbjct: 150 ATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGR 209
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
LAMF+ GFF+QA VTG+GP++NLA HL+DP NN +
Sbjct: 210 LAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAAT 250
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPL 182
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 142/224 (63%), Gaps = 11/224 (4%)
Query: 37 SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
+ + + P++ SP PDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 TAAKAKPVSSGSP--WYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGWDTAGLSADPET 92
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 156
F+K + E+IH RWA+L G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 93 FAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIFSEGGLDYLGNP 151
Query: 157 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 211
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPL 182
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 38 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 94
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 95 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 153
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KN
Sbjct: 154 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKN 213
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 123 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPL 181
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 182 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 242 LADHLADPVNNN 253
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++ L+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVGLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 244 FDHLADPTANN 254
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 124 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 182
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 244 LAKHLSDPFANN 255
L+ HL+DP NN
Sbjct: 243 LSDHLADPVNNN 254
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 138/229 (60%), Gaps = 8/229 (3%)
Query: 33 LPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK 92
+ ++ P+ + + + PDR FL P YL GE PGDYG+D GLS
Sbjct: 9 IAAVRPTRATRQVTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSA 65
Query: 93 KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNY 152
P+ FS+Y+ E+IHARWAMLGA G + PE K GA EAVWFK GA + L+Y
Sbjct: 66 DPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDY 125
Query: 153 FGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQ 207
G ++ +V ++ +IVL+G E YR+ G ++ D ++PG FDPLGLA DPD
Sbjct: 126 LGNANLVHAQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPIYPGEAFDPLGLADDPDT 185
Query: 208 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 256
A LKVKEIKNGRLAM +M GFF+QA VTG+GP+ENL HL+ P N
Sbjct: 186 LAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNF 234
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 43 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 102
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 103 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 161
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 162 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 221
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 222 LADHLADPVNNN 233
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 97 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 155
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 156 ILAIWACQVVLMGFIEGYRVGGGPLGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKN 215
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL+D ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGPLG 182
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 245 AKHLSDPFANN 255
++DP ANN
Sbjct: 243 FDQINDPVANN 253
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 139/218 (63%), Gaps = 11/218 (5%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ SP PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 PVSSGSP--WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAM GA G + PE ++ G G EAVWFK G+ + L+Y G I
Sbjct: 96 LEVIHCRWAMPGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPSLIHAQ 154
Query: 161 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA P+ FA LKVKEIK
Sbjct: 155 SILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADVPEAFAELKVKEIK 214
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE K G G E+VWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L R E P YLTG+ PGDYG+D GLS P+ FSK + E+I
Sbjct: 45 SSSSPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+ P F LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGRFDPLGLAERPQAFDALKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GF +QA VTG+GP+ENLA H++DP NN
Sbjct: 221 AMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 133/214 (62%), Gaps = 8/214 (3%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELI
Sbjct: 31 SSGVEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 88
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 163
HARWAMLGA G PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 89 HARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 147
Query: 164 AVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRL
Sbjct: 148 TSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRL 207
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
A F+M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 208 ASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G
Sbjct: 59 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV 118
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 119 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 177
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 178 EGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 237
Query: 245 AKHLSDPFANN 255
H++DP ANN
Sbjct: 238 FDHVADPVANN 248
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LGVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRIGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G
Sbjct: 59 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV 118
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 119 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 177
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 178 EGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 237
Query: 245 AKHLSDPFANN 255
H++DP ANN
Sbjct: 238 FDHVADPVANN 248
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 144/217 (66%), Gaps = 11/217 (5%)
Query: 46 KSSPSGMVSPDRRIFLPEGLLDRS-EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
K++P+ M + R P+ L S P YL+GE PGDYG+D GLS P+ F+KY+ E
Sbjct: 12 KTTPTSMWYGEDR---PKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIE 68
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IHARWAMLGA G + PE K G + G EAVW+K GA + L+Y G + +
Sbjct: 69 VIHARWAMLGALGCLTPELLAKNGVSFG-EAVWWKAGAQIFAPGGLDYLGNPSLVHAQSI 127
Query: 163 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKN 218
A++A +++L+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 128 IAILASQVLLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLADDPDTFAELKVKEIKN 187
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 188 GRLAMFSMFGFFVQAIVTGKGPLENLESHLADPSVNN 224
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VT +GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADPVANN 253
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 54 PDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 110
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE K G G EAVWFK G+ + L+Y G + + A+ A +++L
Sbjct: 111 ALGCVTPELLAKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVIL 169
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GF
Sbjct: 170 MGAVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGF 229
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F QA VTG+GP+ENL HL +P NN
Sbjct: 230 FTQAIVTGKGPIENLLDHLDNPTVNN 255
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 151/263 (57%), Gaps = 32/263 (12%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDR----- 68
T+ LSSP + K LSP+ S L SG V+ + + P+G
Sbjct: 4 STMALSSPAFAGKAVK------LSPAASEVLG----SGRVTMRKTVAKPKGPSGSPWYGS 53
Query: 69 ----------SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 118
E P YLTGE PGDYG+D GLS P+ F++ + ++IH RWAMLGA G
Sbjct: 54 ERVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGC 113
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 175
+ PE + G G EAVWFK G+ + L+Y G + + A+ A +++L+G
Sbjct: 114 VFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV 172
Query: 176 EYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
E YR+ L ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF Q
Sbjct: 173 EGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFAQ 232
Query: 233 AYVTGEGPVENLAKHLSDPFANN 255
A VTG+GP+ENLA HL+DP NN
Sbjct: 233 AIVTGKGPLENLADHLADPVNNN 255
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 132/192 (68%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE K G
Sbjct: 49 TKSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNG 108
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLD 185
+ G EAVW+K G+ + L+Y G I+ ++ V ++++L+G E YR+ G
Sbjct: 109 VSFG-EAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYRVNGGPA 167
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D L+PG FDPLGLA DPD FA L+VKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 168 GEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 227
Query: 244 LAKHLSDPFANN 255
LA HL++P NN
Sbjct: 228 LADHLANPSVNN 239
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 97 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLG 155
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
+ L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 156 KVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 215
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 216 ADHLADPVNNN 226
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 133/207 (64%), Gaps = 9/207 (4%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+SPS PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 52 FASASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 108
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 109 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 167
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 168 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKN 227
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLA 245
GRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE GDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRE 94
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP NN
Sbjct: 244 FDHLADPANNN 254
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 130/192 (67%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 32 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 91
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 92 VKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 150
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 151 GEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 210
Query: 244 LAKHLSDPFANN 255
L HL+DP ANN
Sbjct: 211 LFDHLADPTANN 222
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 156/254 (61%), Gaps = 18/254 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ S+ KS+P + PDR +L
Sbjct: 6 LHQT---TSFLGTAPRRDD-LVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGP--- 58
Query: 67 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 126
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 183
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 119 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRVGGG 177
Query: 184 LDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GPV
Sbjct: 178 PLGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 237
Query: 242 ENLAKHLSDPFANN 255
ENL H++DP NN
Sbjct: 238 ENLFDHVADPVNNN 251
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 65 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 123
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 124 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 183
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 184 ADHLADPVNNN 194
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 48 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 104
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 105 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 163
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 164 LAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG 223
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
RLAMF+M GFF QA VTG+GP+ENLA HL+
Sbjct: 224 RLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 134/215 (62%), Gaps = 24/215 (11%)
Query: 55 PDRRIFL----PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 110
PDR FL PE +YLTGE PGDYG+D GLS P FS+Y+ E+IHARW
Sbjct: 32 PDRAKFLGPFTPE--------SDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARW 83
Query: 111 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 167
AMLGA G I PE K G G EAVWFK GA + LNY G + + A +A
Sbjct: 84 AMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAV 142
Query: 168 EIVLVGGAEYYRITNGL------DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGR 220
+++L+G AE YR G DL D L+PGG F DPLGLA DPD A LKVKE+KNGR
Sbjct: 143 QVILMGAAEAYRANGGAPGGFGEDL-DSLYPGGKFFDPLGLADDPDTLAELKVKELKNGR 201
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 202 LAMFSMFGFFVQAIVTGQGPIANLDAHLADPSGNN 236
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 135/206 (65%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLG
Sbjct: 52 PDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 109 ALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 167
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M GF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGF 227
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FVQAIVTGKGPLENLADHIADPVNNN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 135/209 (64%), Gaps = 8/209 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +FL GL E P YL GE PGDYG+D GLS P+ F +Y+ ELIHARWA+LG
Sbjct: 43 PNRPLFL-GGL--SGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLG 99
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G ++PE + G + VWFK GA + LNY G ++ +V ++ ++VL
Sbjct: 100 ALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVL 159
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G AE YRI G E D L+PGG FDPLGLA DPD A LKVKE+KNGR+AM AM GF
Sbjct: 160 MGWAEGYRINGGPLGEGLDPLYPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGF 219
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+QA VT +GP+ENLA HL+ P NN+ +
Sbjct: 220 LVQAIVTQKGPLENLADHLAAPGTNNVFS 248
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 12/221 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWASQVVLMGLIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 257
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 156/255 (61%), Gaps = 20/255 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ + S KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGNSGGRITMRRTVKSAPQNIWYGPDR----PKYLG 57
Query: 67 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
SE P YLTG+ PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE +
Sbjct: 58 PFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILS 117
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIAEIVLVGGAEYYRITN 182
K G N G EAVWFK GA + L+Y G P +++ ++VL+G E YR+
Sbjct: 118 KNGVNFG-EAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 183 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G E DK++PGG FD LGLA+DPD FA KVKE NGRLAMF+MLGFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFVQAIVTGKGP 236
Query: 241 VENLAKHLSDPFANN 255
+EN H++DP ANN
Sbjct: 237 IENFFDHVADPVANN 251
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 134/213 (62%), Gaps = 12/213 (5%)
Query: 48 SPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 107
S S PDR FL G +P YLTGE PGDYG+D GLS P+ F +++ E+IH
Sbjct: 32 SDSVWYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIH 89
Query: 108 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFA 164
ARWAMLGA G I PE K+ EAVWFK GA + LNY G ++ +V
Sbjct: 90 ARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVAT 149
Query: 165 VIAEIVLVGGAEYYRITNGL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
++ +++L+G E YR NG + +D L+PGG FDPLGLA DPD A LKVKE+KN
Sbjct: 150 LVVQVLLMGAVEIYR-ANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTLAELKVKELKN 208
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GRLAM +MLGFF+QA VTG+GP++NL HL +P
Sbjct: 209 GRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGEL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAM +M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 217 GRLAMTSMFGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 139/220 (63%), Gaps = 9/220 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSSSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVF 163
H RWAMLGA G + PE + G G EA WFK G+ + L+Y G ++ L+
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLA 160
Query: 164 AVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+ P FA LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
AMF+M GFF+QA VTG+GP+E+LA H++DP NN + +
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIAT 260
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGSPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/206 (52%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 52 PDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE + G G EAV FK G+ + L+Y G I + A+ A ++VL
Sbjct: 109 ALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 167
Query: 172 VGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K GRLAMF+M GF
Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSMFGF 227
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FVQAIVTGKGPLENLADHIADPVNNN 253
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 131/210 (62%), Gaps = 12/210 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P R FL G P YLTGE PGDYG+D GLS P F++Y+ E+IHARWAMLG
Sbjct: 41 PSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLG 98
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G ++PE + G N WF GA + + L Y G IN +V +I +++L
Sbjct: 99 ALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVIL 153
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+ E YR+ G D ++PGG FDPLGLA DPD F+ LKVKEIKNGRLAM +M GF
Sbjct: 154 MSYVEGYRVNGGPAGTGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLSMFGF 213
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
F+QA VTGEGP+ENL KHL+D ANN ++
Sbjct: 214 FIQAIVTGEGPIENLNKHLADASANNFYSL 243
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 138/217 (63%), Gaps = 10/217 (4%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
KS P+ + PDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSVPASIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA V G+GP+ENL+ L+ P ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 132/194 (68%), Gaps = 6/194 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 27 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 86
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 87 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 145
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+ A VTG+GP+ENL
Sbjct: 146 EVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENL 205
Query: 245 AKHLSDPFANNLLT 258
A HL+DP NN +
Sbjct: 206 ADHLADPVNNNAWS 219
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE GDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRE 94
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NG LAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGSLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 140/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
+S+P + PDR P+ L SE P YLTGE PGDYG+D +S P+ F+K +
Sbjct: 2 VRSAPESIWYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRE 57
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 58 LEVIHCRWAMLGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 116
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 117 SILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIK 176
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 177 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDY +D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLG 183
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 EGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
Query: 245 AKHLSDPFANN 255
HL+DP NN
Sbjct: 244 FDHLADPANNN 254
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 53 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 109
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 110 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 168
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 169 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 228
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLA 245
RLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 229 RLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 127/192 (66%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTG+ PGDYG+D GLS P+ F + + E+IH RWAMLGA G + PE + G
Sbjct: 65 EPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 125 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVPGDGPL 183
Query: 187 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
ED L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 184 GEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 244 LAKHLSDPFANN 255
LA HL+DP NN
Sbjct: 244 LADHLADPVNNN 255
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 132/206 (64%), Gaps = 9/206 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 53 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 109
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 110 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 168
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 169 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 228
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLA 245
RLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 229 RLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 17 LLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP-SGMVSPDRRIFLPEGLLDRSEIPEYL 75
L S ++ R+ + + P S+P S P+R +FL E P YL
Sbjct: 5 LAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGA---FTGEPPSYL 61
Query: 76 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 135
TGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE +G G EA
Sbjct: 62 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-EA 120
Query: 136 VWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKL 190
VWFK GA + L+Y G + + A++ +++L+G E YR+ G E DKL
Sbjct: 121 VWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKL 180
Query: 191 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL
Sbjct: 181 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 132/206 (64%), Gaps = 9/206 (4%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+S S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 32 ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 88
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +
Sbjct: 89 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 147
Query: 163 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNG
Sbjct: 148 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG 207
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLA 245
RLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 208 RLAMFSMFGFFVQAIVTGKGPIENLA 233
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ L +P L PR L ++ + + +T S PDR +L ++ P
Sbjct: 11 RVLAAKTPFLGHPRPSNAPLRDIAAAATGRITMSKEL-WYGPDRVKYLGP---FSAQTPS 66
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 133
YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 67 YLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFK 126
Query: 134 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLED 188
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI G+ +
Sbjct: 127 EPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGN 186
Query: 189 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 187 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 246
Query: 248 LSDPFANN 255
L+DP ANN
Sbjct: 247 LADPVANN 254
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 138/218 (63%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
+S+P + PDR P+ L SE P YLTGE PGDYG+D +S P+ F+K +
Sbjct: 42 VRSAPESIWYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRE 97
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 LEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQ 156
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D L PGG FDPLGLA DP+ A LKVKEIK
Sbjct: 157 SILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIK 216
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 6/192 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 77 IKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRVGGGPL 135
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
E D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GPVEN
Sbjct: 136 GEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVEN 195
Query: 244 LAKHLSDPFANN 255
L H++DP NN
Sbjct: 196 LFDHIADPVNNN 207
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ L +P L PR + ++ + + +T S PDR +L ++ P
Sbjct: 11 RVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKEL-WYGPDRVKYLGP---FSAQTPS 66
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 133
YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 67 YLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFK 126
Query: 134 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLED 188
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI G+ +
Sbjct: 127 EPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGN 186
Query: 189 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 187 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 246
Query: 248 LSDPFANN 255
L+DP ANN
Sbjct: 247 LADPVANN 254
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 156/255 (61%), Gaps = 20/255 (7%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPSGM-VSPDRRIFLPEGLL 66
+HQT +S L ++PRR L+ S+ KS+P + PDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDD-LVRSVGDFGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 67 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGG 176
Query: 183 G-LDLE-DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G LD D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLDEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 241 VENLAKHLSDPFANN 255
VENL L DP NN
Sbjct: 237 VENLFDQLRDPGNNN 251
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 126/192 (65%), Gaps = 7/192 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAMLG
Sbjct: 31 PDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLG 88
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVL 171
A G + PE +K+G E+VWFK G+ + L+Y G + I + A++ ++VL
Sbjct: 89 ALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIHAQSILAILGCQVVL 148
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 149 MGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 208
Query: 230 FLQAYVTGEGPV 241
++QA VTG+GP+
Sbjct: 209 YVQAIVTGKGPI 220
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 136/219 (62%), Gaps = 12/219 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+KSS M PDR +FL P YL GE PGDYG+D GLS P+ F++ +A
Sbjct: 40 SKSSSGSMWYGPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRAL 96
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
ELIH RWAMLGA G I PE K+ E VWFK GA + L+Y G I
Sbjct: 97 ELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQS 156
Query: 162 VFAVIA-EIVLVGGAEYYRITNGL---DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEI 216
+ AV A ++VL+G E YR TNGL L+PGG FDPLGLA DP+ A LKVKE+
Sbjct: 157 ILAVWAVQVVLMGAVEAYR-TNGLPGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKEL 215
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KNGRLAMF+M GFF+QA VTG+GP+ENL HL++P +NN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANPVSNN 254
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 128/193 (66%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 65 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWV 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI G
Sbjct: 125 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPG 184
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 185 VGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 244
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 245 NLLDHLDNPVANN 257
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 128/193 (66%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 65 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWV 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI G
Sbjct: 125 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPG 184
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 185 VGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 244
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 245 NLLDHLDNPVANN 257
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 128/200 (64%), Gaps = 15/200 (7%)
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
+S P YLTGE PGDYG+D GLS P F Y+ E+IHARWAMLGA G I PE N
Sbjct: 102 QSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGCIFPELLNSA 161
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA------EIVLVGGAEYYRIT 181
G N VWFK G + + N ++Y G NLV A A ++VL+G +E YR
Sbjct: 162 GFNL---PVWFKAGGTIFE-NGIDYLGNP---NLVHAQSALAVLSVQVVLMGASEAYRFN 214
Query: 182 NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G E D L+PGG FDPLG AKDP + A LKVKEIKNGRLAM AMLG+++QA TG+G
Sbjct: 215 GGPLGEPADVLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQALATGKG 274
Query: 240 PVENLAKHLSDPFANNLLTV 259
P+ENL++HL+DP NN V
Sbjct: 275 PIENLSEHLADPSKNNGFAV 294
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 154/273 (56%), Gaps = 29/273 (10%)
Query: 1 MSAVLLG--LQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSP---------SPPLTKSSP 49
M++ LG L+++ +T +S ++ + ++ P + + S + S
Sbjct: 4 MTSTFLGSALEVKAARTQRKASHVVEAAKKAPVKTVKKAAAKATKAVKKTASKAKSASGA 63
Query: 50 SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 109
S DR +L G RS P YL GE PGDYG+D GLS P+ FS+Y+ E+IHAR
Sbjct: 64 SFWYGADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHAR 119
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFA 164
WAMLGA G ++PE ++ WF GA + + Y G +P N++
Sbjct: 120 WAMLGALGIVVPELLDQTN-----HVAWFDAGATIFGPKGIQYLG--VPGLINAKNIIAT 172
Query: 165 VIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 222
V +++L+G E YR+ G E DK++PG FDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 173 VAVQVILMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLA 232
Query: 223 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
MF+ GFF+QA VTG+GP+ NL HL++P NN
Sbjct: 233 MFSNFGFFVQAIVTGKGPIANLNDHLANPTVNN 265
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 129/194 (66%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 123
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLD 182
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 183 GVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 243 ENLLDHLDDPVANN 256
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 129/194 (66%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 65 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 125 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLD 183
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 184 GVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 244 ENLLDHLDDPVANN 257
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 129/194 (66%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 68 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 127
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 128 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLD 186
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 187 GVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 246
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 247 ENLLDHLDDPVANN 260
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 124/191 (64%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE GDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G I + A+ ++V +G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVFMGAVEGYRVAGGPLG 182
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG DPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA VTG+GP+EN+
Sbjct: 183 EVVDPLYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPLENI 242
Query: 245 AKHLSDPFANN 255
HL+DP NN
Sbjct: 243 TDHLADPVNNN 253
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 63 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWV 122
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ +++L+G E YRI G
Sbjct: 123 RVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPG 182
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 183 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
Query: 243 NLAKHLSDPFANN 255
NL H+ +P ANN
Sbjct: 243 NLLDHIDNPVANN 255
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 125/194 (64%), Gaps = 6/194 (3%)
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NK 126
+ + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR +LGA G + PE ++
Sbjct: 69 QHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADE 128
Query: 127 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 183
G G A+WFK GA + LNY G I N+V + ++VL+G E YR+ G
Sbjct: 129 DGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGG 188
Query: 184 LDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+
Sbjct: 189 PAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPI 248
Query: 242 ENLAKHLSDPFANN 255
ENL HL++P NN
Sbjct: 249 ENLTDHLANPAENN 262
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P Y + PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 43 PNRAKWL--GPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 100
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA------- 167
A G I PE K G G EAVWFK GA + L+Y G +LV A
Sbjct: 101 ALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNP---SLVHAQNIRRHPGRF 156
Query: 168 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 157 KVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 216
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
M GFF+QA VTG+GP++NL HLS+P NN +
Sbjct: 217 MFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFAT 252
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 123/195 (63%), Gaps = 5/195 (2%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE G
Sbjct: 46 PSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVAS 105
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE- 187
EAVWFK GA + L+Y G I+ +V ++ ++ L+G E YR+ G E
Sbjct: 106 FGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYRVNGGPAGEG 165
Query: 188 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D L+PG FDPLGLA DPD F+ LKVKE+KNGRLAM +M GFF+Q VT +GP+ENL
Sbjct: 166 LDALYPGEAFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLND 225
Query: 247 HLSDPFANNLLTVIS 261
HL+ P A N + +
Sbjct: 226 HLASPDATNFWAIYA 240
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 59 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 118
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 119 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 178
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 179 VGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 238
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 239 NLLDHLDNPVANN 251
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/193 (52%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 63 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWL 122
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ +++L+G E YRI G
Sbjct: 123 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPG 182
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 183 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 243 NLLDHLDNPVANN 255
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 147/256 (57%), Gaps = 19/256 (7%)
Query: 16 LLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSG----------MVSPDRRIFLPEGL 65
L+ ++ S+ R P L + S PL P G PDR +L
Sbjct: 2 LMAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP-- 59
Query: 66 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE
Sbjct: 60 -FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
K+ E +WFK GA + L+Y G + + AV+ ++VL+G E +RI
Sbjct: 119 KWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 178
Query: 183 --GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 179 LPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 240 PVENLAKHLSDPFANN 255
P+ENL HL +P ANN
Sbjct: 239 PLENLLDHLDNPVANN 254
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 59 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 118
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 119 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 178
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 179 VGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 238
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 239 NLLDHLDNPVANN 251
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 128/193 (66%), Gaps = 8/193 (4%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVR 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD- 185
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 122 VEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLDG 180
Query: 186 --LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 243 NLAKHLSDPFANN 255
NL H+ DP ANN
Sbjct: 241 NLLDHIDDPVANN 253
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 147/247 (59%), Gaps = 11/247 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEY 74
T++ ++P L + PL ++ S T S+ PDR +L ++ P Y
Sbjct: 12 TVVKATPFLGQTKNANPLRDVVAMG-SARFTMSNDL-WYGPDRVKYLGP---FSAQTPSY 66
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
L GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKE 126
Query: 135 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 189
VWFK G+ + L+Y G + + AV+ ++VL+G E +RI G+ +
Sbjct: 127 PVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 186
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 187 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 246
Query: 249 SDPFANN 255
+P ANN
Sbjct: 247 DNPVANN 253
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 133/206 (64%), Gaps = 12/206 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 156 SILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIK 215
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVEN 243
NGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIEN 241
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 130/194 (67%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL+GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+
Sbjct: 63 AQTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWV 122
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ ++++L+G E +RI NGLD
Sbjct: 123 GVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRI-NGLD 181
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 182 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 242 ENLFDHLDDPVANN 255
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 140/216 (64%), Gaps = 15/216 (6%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAMLG
Sbjct: 128 PDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLG 185
Query: 115 AAGFIIPE--AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEI 169
A G I PE A N +G E VWFK GAL+L+ +++Y G ++ ++ A++
Sbjct: 186 ALGCIFPEILAMN-YGVGL-EEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQV 243
Query: 170 VLVGGAEYYRIT----NGLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
+L+GGAE YR + NG + DK+HPGG F+PL KD A LKVKEIKNGRLAMF
Sbjct: 244 LLMGGAEAYRASGVAPNGEEF-DKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAMF 302
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+MLGF++QA TG GP++NL H +D N+ +
Sbjct: 303 SMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYV 338
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 57 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWV 116
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 117 NVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRI-NGLD 175
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 176 GVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 235
Query: 242 ENLAKHLSDPFANN 255
EN HL +P ANN
Sbjct: 236 ENWLDHLDNPVANN 249
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/194 (53%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 60 AQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 119
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 120 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLD 178
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 179 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQAIVTGKGPL 238
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 239 ENLLDHLDDPVANN 252
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 64 AQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 123
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E YRI NGLD
Sbjct: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI-NGLD 182
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 242 ENLAKHLSDPFANN 255
ENL HL +P ANN
Sbjct: 243 ENLLDHLDNPVANN 256
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 128/193 (66%), Gaps = 8/193 (4%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVR 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD- 185
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 122 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLDG 180
Query: 186 --LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 241 NLLDHLDNPVANN 253
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 128/193 (66%), Gaps = 8/193 (4%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVR 121
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD- 185
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 122 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI-NGLDG 180
Query: 186 --LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 241 NLLDHLDNPVANN 253
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 20 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 79
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 80 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 139
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 140 VGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 199
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 200 NLLDHLDNPVANN 212
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 63 AQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 122
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ +++L+G E YRI NGLD
Sbjct: 123 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI-NGLD 181
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 182 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 242 ENLAKHLSDPFANN 255
ENL HL +P ANN
Sbjct: 242 ENLLDHLDNPVANN 255
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 65 AQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ ++VL+G E +RI NGLD
Sbjct: 125 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLD 183
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 184 GVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
Query: 242 ENLAKHLSDPFANN 255
ENL HL +P ANN
Sbjct: 244 ENLLDHLDNPVANN 257
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 147/247 (59%), Gaps = 11/247 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEY 74
T++ +P L + PL ++ +P T + PDR +L ++ P Y
Sbjct: 12 TVVKQTPFLGQRKSANPLRDVVAMG-TPKFTMGNDL-WYGPDRVKYLGP---FSAQTPSY 66
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 67 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKE 126
Query: 135 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLED--K 189
VWFK G+ + L+Y G + + AV+ +IVL+G E +RI D+ +
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGND 186
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 187 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 246
Query: 249 SDPFANN 255
+P ANN
Sbjct: 247 DNPVANN 253
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 140/242 (57%), Gaps = 21/242 (8%)
Query: 31 PLLPSLSPSPSPPLTKSSPSG----------MVSPDRRIFLPEGLLDRSEIPEYLTGEVP 80
P L SP PL G PDR +L ++ P YL GE P
Sbjct: 15 PFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGP---FSAQTPSYLNGEFP 71
Query: 81 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 140
GDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK
Sbjct: 72 GDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKA 131
Query: 141 GALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGG 194
G+ + L+Y G + + AV+ ++VL+G E +RI NGLD + L+PGG
Sbjct: 132 GSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLDGVGEGNDLYPGG 190
Query: 195 P-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 253
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL DP A
Sbjct: 191 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVA 250
Query: 254 NN 255
NN
Sbjct: 251 NN 252
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 130/194 (67%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL- 184
E VWFK G+ + L+Y G + + AV+ +IVL+G E +RI NGL
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRI-NGLP 179
Query: 185 DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
D+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 DVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 242 ENLAKHLSDPFANN 255
ENL HL +P ANN
Sbjct: 240 ENLLDHLDNPVANN 253
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 124/183 (67%), Gaps = 6/183 (3%)
Query: 78 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 137
E PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 138 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 192
FK G+ + L+Y G + + V A +++L+G E YRI G ++ D L+P
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPLYP 119
Query: 193 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 252
GG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 179
Query: 253 ANN 255
NN
Sbjct: 180 NNN 182
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+
Sbjct: 64 AQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWV 123
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 124 GVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLD 182
Query: 186 ---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 183 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 242 ENLAKHLSDPFANN 255
ENL HL DP ANN
Sbjct: 243 ENLFDHLDDPVANN 256
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 AQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 123
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 124 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 184 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 244 NLLDHLDNPVANN 256
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 60 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 119
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 120 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 179
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 VGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NL H+ +P ANN
Sbjct: 240 NLLDHIDNPVANN 252
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 121
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 122 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 181
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 182 VGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
Query: 243 NLAKHLSDPFANN 255
NL H+ +P ANN
Sbjct: 242 NLLDHIDNPVANN 254
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 152/258 (58%), Gaps = 23/258 (8%)
Query: 18 LSSPLLSSPRR----KPPLLPSLSPSPSPPL--TKSSPSGMVS--------PDRRIFLPE 63
++S ++++ R K P L + + PL ++ +G ++ PDR +L
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYLGP 60
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
++ P YLTGE GDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE
Sbjct: 61 ---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 117
Query: 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 180
K+ E VWFK GA + L+Y G + + AV+ +++L+G E YRI
Sbjct: 118 LEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI 177
Query: 181 TN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
G+ + L+PGG FDPLGLA DP FA L+VKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 NGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 EGPVENLAKHLSDPFANN 255
+GP+ENL HL +P ANN
Sbjct: 238 KGPLENLLDHLDNPVANN 255
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 60 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWV 119
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK G+ + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 120 KVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLPG 179
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 VGEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 240 NLLDHLDNPVANN 252
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 146/253 (57%), Gaps = 23/253 (9%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL-----SPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD 67
T+ LSS L+ K P P L S + P T SS S PDR +L
Sbjct: 4 STMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGP---F 60
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
E P YLTGE GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 112
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 183
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 113 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 171
Query: 184 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
++ D ++PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 172 LGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 231
Query: 243 NLAKHLSDPFANN 255
NLA HL+DP NN
Sbjct: 232 NLADHLADPVNNN 244
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 66 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI G
Sbjct: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 186 VGEGNNLYPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
Query: 243 NLAKHLSDPFANN 255
NL HL DP ANN
Sbjct: 246 NLLDHLDDPVANN 258
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 27 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 86
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E +WFK GA + L+Y G + + AV+ ++VL+G E +RI G
Sbjct: 87 RVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 146
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 147 VGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 206
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 207 NLLDHLDNPVANN 219
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 122/181 (67%), Gaps = 6/181 (3%)
Query: 80 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 139
PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 140 TGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGG 194
GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PGG
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGG 122
Query: 195 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 254
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP AN
Sbjct: 123 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTAN 182
Query: 255 N 255
N
Sbjct: 183 N 183
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 121/188 (64%), Gaps = 26/188 (13%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE-- 187
G EAVWFK ++A +++VL+G E YR+ G E
Sbjct: 125 KFG-EAVWFKA---------------------IWA--SQVVLMGLIEGYRVGGGPLGEGL 160
Query: 188 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 161 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 220
Query: 248 LSDPFANN 255
L+DP ANN
Sbjct: 221 LADPTANN 228
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 140/218 (64%), Gaps = 12/218 (5%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS P + PDR P+ L SE P YLTGE PGDYG++ G+S P+ F++ +
Sbjct: 5 VKSVPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRE 60
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 160
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 61 LEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 119
Query: 161 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ A+ A ++VL+G E Y + G E DK++PGG F+PLGLA DPD A LKVKE+K
Sbjct: 120 SILAIWACQVVLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELKVKELK 179
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 180 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 125/193 (64%), Gaps = 6/193 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 63 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWV 122
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--G 183
E VWFK GA + L+Y G + + AV+ +++L+G E YRI G
Sbjct: 123 RVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPG 182
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M FF+QA VTG+G +E
Sbjct: 183 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFRFFVQAIVTGKGSLE 242
Query: 243 NLAKHLSDPFANN 255
NL H+ +P ANN
Sbjct: 243 NLLDHIDNPVANN 255
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 125/191 (65%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE P G P P+ F+K + E+IHARWAMLGA G + PE ++ G
Sbjct: 65 EPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELLSRNGV 124
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 183
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+ENL
Sbjct: 184 EITDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENL 243
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 244 ADHLADPVNNN 254
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 125/182 (68%), Gaps = 7/182 (3%)
Query: 80 PGDYGYDPF-GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 138
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 139 KTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPG 193
K GA + L+Y G + + A+ A +++L+G E YRI G ++ D L+PG
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 119
Query: 194 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 253
G FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 179
Query: 254 NN 255
NN
Sbjct: 180 NN 181
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 153/271 (56%), Gaps = 40/271 (14%)
Query: 24 SSPRRKPPLLPSLSP---SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVP 80
++P +KP +P + P K++ + P+R+++LP GLL ++++P YL G +
Sbjct: 62 TTPVKKPTPATKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLA 121
Query: 81 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 140
GDYG+DP GL Y+ E++HARWAML G +IPEA N P VW +T
Sbjct: 122 GDYGFDPLGLGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNI------PGGVWTET 174
Query: 141 GALLLDGNTLNYFGKNIPINL--VFAVIAEIVLVGGAEYYRIT----------------- 181
G + LDG T G++ + ++A I ++VL+GGAE +R
Sbjct: 175 GKVFLDGET----GRDSILEFWPIYAAI-QVVLMGGAEKFRQDGVGPAGFVPFKGKFEES 229
Query: 182 --NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
NGLD ++PGGP D +AK+P +LKVKEIKNGRLAM AMLG F+Q VTGEG
Sbjct: 230 AFNGLD---PVNPGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEG 286
Query: 240 PVENLAKHLSDPFANNLLTVISGNAERAPTL 270
P N KH+++PF N +T+ SG +R P L
Sbjct: 287 PAANWGKHVANPFGYNFVTITSG-IDRTPVL 316
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 116/173 (67%), Gaps = 5/173 (2%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE K+G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGG 111
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDL 186
E+VWFK G+ + L+Y G + + + A++ +++L+G E YR+ G
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRVNGGPLG 171
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
E D L+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF++QA VTG
Sbjct: 172 EGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 138/226 (61%), Gaps = 9/226 (3%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P S S DR ++L G L S P YLTGE PGDYG+D GLS P
Sbjct: 31 TMRKTAAKPKPARSGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWA+ G + PE + G G E VWFK G+ + L++ G
Sbjct: 88 ETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E Y + G ++ D L+ GG FDPLGL DP++FA
Sbjct: 147 NPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFA 206
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 68 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127
R + PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + F
Sbjct: 103 RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLF 162
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRI 180
G E VW+K G L G+TL+Y G IP ++ I +++L+ G EY R
Sbjct: 163 GIVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGIIVIAICQVLLMVGPEYARY 220
Query: 181 TNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE D +PGG FDPLGL+KDP F KVKEIKNGRLAM A +GF++
Sbjct: 221 CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYI 280
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLT 258
QA VTG+GPV+NLA+HLSDP NN+L+
Sbjct: 281 QAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ PEYLTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 110 DYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGL 169
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+ L+Y G IP +V I + +L+ G EY R
Sbjct: 170 VHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVIAICQALLMVGPEYARYCG 227
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGGP FDPLGL+KDP F LKVKEIKNGRLAM A GF++QA
Sbjct: 228 IEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQA 287
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 288 AVTGKGPVQNLVEHLSDPLNNNILS 312
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWAMLG
Sbjct: 48 PDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLG 104
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE +K+ E VWFK G+ + L+Y G + + A+ A +++L
Sbjct: 105 ALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVIL 164
Query: 172 VGGAEYYRITNGL-DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
+G E YRI NGL D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+M
Sbjct: 165 MGLVEGYRI-NGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMF 223
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 224 GFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWAMLG
Sbjct: 48 PDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLG 104
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL 171
A G + PE +K+ E VWFK G+ + L+Y G + + A+ A +++L
Sbjct: 105 ALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVIL 164
Query: 172 VGGAEYYRITNGL-DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
+G E YRI NGL D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+M
Sbjct: 165 MGLVEGYRI-NGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMF 223
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 224 GFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 131/211 (62%), Gaps = 9/211 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ S + SS S PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 TMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 62
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 63 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 121
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 122 NPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 181
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 127/193 (65%), Gaps = 8/193 (4%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PG+YG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 18 QTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVR 77
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD- 185
E VWFK G+ + L+Y G + + AV+ +++L+G E RI NGLD
Sbjct: 78 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRI-NGLDG 136
Query: 186 --LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 137 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 196
Query: 243 NLAKHLSDPFANN 255
NL HL +P ANN
Sbjct: 197 NLLDHLDNPVANN 209
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 135 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 189
VWFK GA + L+Y G + + AV+ ++VL+G E +RI G+ +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 121 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 180
Query: 249 SDPFANN 255
+P ANN
Sbjct: 181 DNPVANN 187
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ PE+LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 109 DYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGVVIPELLDLFGL 168
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 169 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 226
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 227 IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 286
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 287 AVTGKGPVQNLVEHLSDPLHNNILS 311
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 122/180 (67%), Gaps = 6/180 (3%)
Query: 81 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 140
GDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 141 GALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP 195
GA + L+Y G + + A+ A ++VL+G E YR+ G E DK++PGG
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 196 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 179
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 175
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 233
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 234 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 293
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GP++NL +HLSDP NN+L+
Sbjct: 294 AVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 127/203 (62%), Gaps = 14/203 (6%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGL 184
E VW+K G L G+TL+Y G + I ++ I + +L+ G EY R
Sbjct: 173 VHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYCGIE 232
Query: 185 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF+LQA V
Sbjct: 233 ALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAV 292
Query: 236 TGEGPVENLAKHLSDPFANNLLT 258
TG+GPV+NL +HLSDP NN+L+
Sbjct: 293 TGKGPVQNLVEHLSDPLHNNILS 315
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 137/246 (55%), Gaps = 28/246 (11%)
Query: 41 SPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
SP K + + PDR+++LP GLL ++++P YL G + GDYG+DP GL +Y
Sbjct: 91 SPTAAKEALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQY 149
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
+ E+IHARWAML G +IPEA P VW +TG + LDG T F PI
Sbjct: 150 RVAEVIHARWAMLAIPGVVIPEALGL------PGGVWTETGKVFLDGETGRPFFLENPI- 202
Query: 161 LVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKD 204
VFA + ++ L+ G E +R + + D ++PGGP D +A +
Sbjct: 203 -VFAAV-QVALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFNVASN 260
Query: 205 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
P ALLKVKEIKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ +
Sbjct: 261 PQDLALLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTLQA--V 318
Query: 265 ERAPTL 270
+R P L
Sbjct: 319 DRTPVL 324
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 126/201 (62%), Gaps = 9/201 (4%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+I
Sbjct: 45 SSGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A
Sbjct: 102 HCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILA 160
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRL
Sbjct: 161 IWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL 220
Query: 222 AMFAMLGFFLQAYVTGEGPVE 242
AMF+M GFF+QA VTG P
Sbjct: 221 AMFSMFGFFVQAIVTGGEPCR 241
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 116/173 (67%), Gaps = 5/173 (2%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLDL 186
E+VWFK G+ + L+Y G + + + A++ +++L+G E YR+ G
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLG 171
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG
Sbjct: 172 EGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 18/213 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P+YLTGE+PGDYG+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E +W++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPL L+KD + F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 246 IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQA 305
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVISGNAER 266
+TG+GPV+NL H++DPF NN L++++ + R
Sbjct: 306 ALTGKGPVQNLLNHIADPFHNNFLSLLNSSFSR 338
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 100 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 157
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 158 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 217
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GP++NL +HLSDP NN+L+
Sbjct: 218 AVTGKGPIQNLVEHLSDPLHNNILS 242
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGLRIAGGQGIIVIAICQALLMVGPEYARYCG 118
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 119 IEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQA 178
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 179 AVTGKGPVQNLIEHLSDPLHNNILS 203
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 18/213 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P+YLTGE+PGDYG+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E +W++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPL L+KD F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 246 IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQA 305
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVISGNAER 266
+TG+GPV+NL H++DPF NN L++++ + R
Sbjct: 306 ALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 338
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 126/205 (61%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + F
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFEV 175
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 233
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 234 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 293
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VTG+GP++NL +HLSDP NN+L+
Sbjct: 294 AVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 114/176 (64%), Gaps = 11/176 (6%)
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GLS P F++Y+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 149 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL------DLEDKLHPGGPFDPL 199
LNY G + + A +A +++L+G AE YR G DL D L+PGG FDPL
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPL 119
Query: 200 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 120 GLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNN 175
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE+PGDYG+D GL + P KY +E++HARWAML + G +IPE + GA
Sbjct: 120 EYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGA 179
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVFAVIAEIVLVGGAEYYRITNGL 184
E VW++ G L G+TL+Y G +V I + +L+ G EY R
Sbjct: 180 FHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIE 239
Query: 185 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
LE D +PGG FDPL L+ DP+ F LKVKEIKNGRLAM A LGF++QA +
Sbjct: 240 ALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAAL 299
Query: 236 TGEGPVENLAKHLSDPFANNLL 257
TG+GPV+NL H+SDPF NNLL
Sbjct: 300 TGKGPVQNLIDHISDPFHNNLL 321
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 122/189 (64%), Gaps = 10/189 (5%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
PDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 48 GPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAML 104
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 170
GA G + PE K G E VWFK GA + L+Y G I + A +A +++
Sbjct: 105 GALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVI 163
Query: 171 LVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L+G E YR+ G E DKLHPGG FDPLGLA+DPD FA LKVKEIKNGRLAMF+M
Sbjct: 164 LMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMF 223
Query: 228 GFFLQAYVT 236
GFF+QA VT
Sbjct: 224 GFFVQAIVT 232
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 146/267 (54%), Gaps = 32/267 (11%)
Query: 25 SPRRKPPLLPSLSPSPSPPLTKSSPSGMVS----PDRRIFLPEGLLDRSEIPEYLTGEVP 80
+P +K P+ + + P+ + + +S P R+++LP GLL ++IP YL G++
Sbjct: 36 TPAKKAPVTVKKTVKKAAPVKTTVKTADLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLA 95
Query: 81 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 140
GDYG+DP GL +Y+ E+IHARWAML G +IPEA N G + W +T
Sbjct: 96 GDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGD------WRET 148
Query: 141 GALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------------NGLD 185
G + L+G+T FG + L AV IVL+GGAE +R G D
Sbjct: 149 GKVFLEGST-GRFGP-AELWLGIAVAPLIVLMGGAEKFRSDPASAPSGFVPFKGSFTGKD 206
Query: 186 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
D ++PGGP D +A P +LKVKEIKNGRLAM AMLG F+Q TGEGP N
Sbjct: 207 FAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEGPAAN 266
Query: 244 LAKHLSDPFANNLLTVISGNAERAPTL 270
KH++DPF N +T+ + +R P L
Sbjct: 267 WGKHVADPFGYNFVTLNA--VDRTPVL 291
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 125/207 (60%), Gaps = 18/207 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE KF
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E+VW++ G L+G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 174 VNFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGIIVIAICQFLLMVGPEYARYCG 231
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 232 IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQA 291
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVI 260
VT +GP+ENL HL DP NN +T I
Sbjct: 292 LVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/191 (52%), Positives = 120/191 (62%), Gaps = 19/191 (9%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F AMLGA G + PE K G
Sbjct: 65 QTPSYLTGEFPGDYGWDTAGLSADPETF-------------AMLGALGCVFPELLAKTGV 111
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 186
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 112 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLG 170
Query: 187 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 171 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 230
Query: 245 AKHLSDPFANN 255
HL+DP ANN
Sbjct: 231 FDHLADPTANN 241
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 132/209 (63%), Gaps = 20/209 (9%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YL+GE+PGDYG+D GL++ P F +Y +E++HARWAML A G +IPE + GA
Sbjct: 131 QYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGA 190
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA------VIA--EIVLVGGAEYYRIT 181
E VW++ G L G+TL+Y G IP L FA VIA + +L+ G EY R
Sbjct: 191 FHFIEPVWWRVGYSKLKGDTLDYLG--IP-GLHFAGGQGVLVIAFCQAILMVGPEYARYC 247
Query: 182 NGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++Q
Sbjct: 248 GIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQ 307
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVIS 261
A +TG+GPVENL +H+SDP NNL + +
Sbjct: 308 AALTGKGPVENLVEHISDPLHNNLFSTLK 336
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE KF
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-INLVFA------VIAEIVLVGGAEYYRITN 182
E+VW++ G L+G+TL+Y G IP +++V A I + +L+ G EY R
Sbjct: 174 VKFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGILVIAICQFLLMVGPEYARYCG 231
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 232 IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQA 291
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVI 260
VT +GP+ENL HL DP NN +T I
Sbjct: 292 LVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 4 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 62
Query: 149 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAK 203
L+Y G + + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA
Sbjct: 63 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLAD 122
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 18/212 (8%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+E P +LTGE PGD G+DPFGL+K P DF+K++ E+ H RWAMLG G ++PE F G
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLG 217
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLD 185
P W+ A + + + L+Y G + N+ F ++ ++L+G E +R L
Sbjct: 218 IAQLP--AWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWRWNGALA 274
Query: 186 LEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
E K +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVTGEGP
Sbjct: 275 SEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVTGEGP 330
Query: 241 VENLAKHLSDPFANNLLTVI---SGNAERAPT 269
+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 331 LANLAAHLADPAHNNLLNTVAMFAASGEKRPT 362
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 123/205 (60%), Gaps = 23/205 (11%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+E P +LTGE PGD G+DP GL+K P+DF+K + E+ H RWAMLG G ++PE F G
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLVGGAEYYRIT 181
P W++ GA+ G +L+Y G N+P L+F ++L E +R
Sbjct: 427 IAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF--FTTLLLFLPIEAWRWN 479
Query: 182 NGLDLEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
+ E K +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVT
Sbjct: 480 GQIAPEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVT 535
Query: 237 GEGPVENLAKHLSDPFANNLLTVIS 261
GEGP+ NLA HL+DP NNLL ++
Sbjct: 536 GEGPLANLAAHLADPAHNNLLNTVA 560
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 91/164 (55%), Gaps = 26/164 (15%)
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLVG 173
PE F G P W++ GA+ G +L+Y G N+P L+F ++L
Sbjct: 1 PEVFGNLGIAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF--FTTLLLFL 53
Query: 174 GAEYYRITNGL--DLEDK---LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
E +R + D + K +PGGPFDPL L P+ LK+KEIKNGRLAM M G
Sbjct: 54 PIEAWRWNGQIAPDAKSKEWTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFG 109
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI---SGNAERAPT 269
F+ Q+YVTGEGP+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 110 FWAQSYVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPT 153
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/182 (52%), Positives = 115/182 (63%), Gaps = 26/182 (14%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P R +FLP GLL+RS++P YLTG++ GDYGYDP GL K P+ KY+A+ELIHARWAML
Sbjct: 67 PSRVLFLPSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLA 126
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA- 167
AAG IIPE GA+ A WF+TGA +L+G TLNYF +P +V FA++A
Sbjct: 127 AAGMIIPEGLAANGADI-KGATWFETGAEMLNGGTLNYFA--VPWAIVSNPLPLFAIVAV 183
Query: 168 EIVLVGGAEYYRITNG----------------LDLEDKLHPGGPFDPLGLAKDPDQFALL 211
E+ L+G AE YR T D D LHPGGPFDPLGLA DP+ F L
Sbjct: 184 EVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGPFDPLGLADDPEVFQEL 243
Query: 212 KV 213
KV
Sbjct: 244 KV 245
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Query: 86 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 145
D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIF 59
Query: 146 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 200
L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 119
Query: 201 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LA DPD FA LKVKEIKNG LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 LADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 114/172 (66%), Gaps = 6/172 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 184
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLG 182
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 183 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 129/224 (57%), Gaps = 28/224 (12%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + P +S S DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 31 TMRKTAGKPKPAASGSPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALL 211
I + A+ A ++VL+G E YRI A DP+ FA L
Sbjct: 147 NPSLIHAQSILAIWACQVVLMGAVEGYRI---------------------ADDPEAFAEL 185
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KVKEIKNGRLAMF+M GFF+QA VTG+GPVENLA HL+DP NN
Sbjct: 186 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 229
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 116/183 (63%), Gaps = 9/183 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAMLG
Sbjct: 155 PDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLG 211
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE G G AVW+K GA + + LNY G I+ +V ++ + +
Sbjct: 212 ALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAI 271
Query: 172 VGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+KNGRLAM AMLG
Sbjct: 272 MGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGRLAMVAMLG 331
Query: 229 FFL 231
F++
Sbjct: 332 FYV 334
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G +IPE + GA
Sbjct: 124 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGA 183
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW++ G L G TL+Y G IP ++ I +++L+ G EY R
Sbjct: 184 FHFAEPVWWRVGYSKLQGETLDYLG--IPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 241
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPL L++DP F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 242 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 301
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVIS 261
TG+GPV+NL H+SDP NNLL ++
Sbjct: 302 AFTGKGPVQNLVDHVSDPLHNNLLAMLQ 329
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 18/208 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G +IPE F+ G
Sbjct: 121 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGT 180
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW++ G L G TL Y G IP ++ I +++L+ G EY R
Sbjct: 181 FHFAEPVWWRVGYSKLQGETLEYLG--IPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 238
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPL L++DP F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 239 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 298
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVIS 261
TG+GPV+NL H+SDP NNL+ ++
Sbjct: 299 AFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/184 (50%), Positives = 118/184 (64%), Gaps = 10/184 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 40 PNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 97
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI----NLVFAVIAEIV 170
A G + P+ +K G EA+WFK GA + L+Y G N+ + N+V + +++
Sbjct: 98 ALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLACQVI 155
Query: 171 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLVEGYRVNGGPAGEGLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 229 FFLQ 232
FF+Q
Sbjct: 216 FFVQ 219
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 119/181 (65%), Gaps = 8/181 (4%)
Query: 82 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 141
DYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 142 ALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 195
A + L+Y G + + AV+ ++V++G E +RI NGLD + L+PGG
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 196 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 254
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P AN
Sbjct: 120 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 179
Query: 255 N 255
N
Sbjct: 180 N 180
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 112/170 (65%), Gaps = 6/170 (3%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 7 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 66
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 183
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 67 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 125
Query: 184 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 126 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
SS S PDR +L E P YLTGE PGDYG++ GLS P+ F+K + E+I
Sbjct: 28 SSGSPWYGPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVI 84
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFA 164
H+RWAM F++ WFK + + L+Y G + + A
Sbjct: 85 HSRWAM-----------FDR----------WFKARSQIFSEGGLDYLGNPSLVHAQSILA 123
Query: 165 VIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 221
+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKEIKNGRL
Sbjct: 124 IWACQVILMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFVELKVKEIKNGRL 183
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
AMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 184 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 18/205 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P++L GE PGDYG+D GLS+ P F +Y +E++HARWAML A G +IPE ++FG
Sbjct: 141 DYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGG 200
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW+K G L G+TL+Y G IP ++ +++L+ G EY R
Sbjct: 201 VQFSEPVWWKVGYAKLQGDTLDYLG--IPGLHIAGAQGILVIAFCQVILMLGPEYARYCG 258
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPLGL KD F LKVKE+KNGRLAM A LGF++QA
Sbjct: 259 IEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQA 318
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
VT +GP++NL L DP NL
Sbjct: 319 LVTQKGPIDNLFDFLEDPLHQNLFA 343
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 61
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPLYPGGSFDPLGLADDPEAFA 121
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 122 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 115/183 (62%), Gaps = 10/183 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G L E P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWAMLG
Sbjct: 45 PDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLG 101
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G I PE G E VWFK GA + LNY G ++ ++ ++ +++L
Sbjct: 102 ALGCITPELLANNGTPIA-EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVIL 160
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+G E YR+ G E DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 161 MGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 220
Query: 229 FFL 231
FF+
Sbjct: 221 FFV 223
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 148/264 (56%), Gaps = 15/264 (5%)
Query: 6 LGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSP---DRRIFLP 62
L + + +H L+ ++ P + P+ +L + + K + VS DRR+
Sbjct: 6 LSVSICLHPLLIYK---IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYL 62
Query: 63 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE
Sbjct: 63 GPF--SGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPE 120
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYR 179
+ G G EAVWFK GA + L+Y G + + A+ +++L+G E YR
Sbjct: 121 LLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYR 179
Query: 180 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
I G ++ D L+PG FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+
Sbjct: 180 IARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSR 238
Query: 238 EGPVENLAKHLSDPFANNLLTVIS 261
+ +ENLA HL NN L+ ++
Sbjct: 239 KDRLENLADHLGWTVNNNALSNVT 262
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 132/243 (54%), Gaps = 31/243 (12%)
Query: 47 SSPSGMVSPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 105
S S P+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++Y+ E+
Sbjct: 103 SDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEV 161
Query: 106 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 165
HARWAML G +IPEA G N W +TG + LDG I N
Sbjct: 162 QHARWAMLAVPGVVIPEALGVPGGN------WTETGKVFLDGEAGR---PEILGNPYLFT 212
Query: 166 IAEIVLVGGAEYYRITN---------------GLDLE--DKLHPGGPFDPLGLAKDPDQF 208
E+ L+ G E YR G D + D ++PGGP D L +A P+
Sbjct: 213 AIEVALLAGVEGYRSGKLEAPAGFAPIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDL 272
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVISGNAERA 267
A+LKVKEIKNGRLAM AMLG F+Q T GEGP N AKH++DPFA N +T+ + +R
Sbjct: 273 AILKVKEIKNGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYNFVTISA--IDRT 330
Query: 268 PTL 270
P L
Sbjct: 331 PVL 333
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 119/197 (60%), Gaps = 15/197 (7%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY-----YRIT--- 181
G EAVW + L + G + +G + Y R T
Sbjct: 124 KFG-EAVWVQGWFTDLQRRRI---GPTWATPSLVHAQEHFSHLGYSSYPHGSLLRATRVP 179
Query: 182 -NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 180 GNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 239
Query: 239 GPVENLAKHLSDPFANN 255
GP+ENLA HL+DP NN
Sbjct: 240 GPLENLADHLADPVNNN 256
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 131/240 (54%), Gaps = 32/240 (13%)
Query: 50 SGMVSPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 108
S P+RR++LP GLLD +++P YL G + GDYG+DP L K +Y+A E+IHA
Sbjct: 82 SKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHA 140
Query: 109 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-LVFAVIA 167
RWAML G +IPEA P VW +TG + LDG I N +FA I
Sbjct: 141 RWAMLAIPGIVIPEALGI------PGGVWTETGKVFLDGEAGR---PEILQNPYLFAAI- 190
Query: 168 EIVLVGGAEYYRIT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFAL 210
+I L E YR +G D D ++PGGP D +A PD A+
Sbjct: 191 QIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGPLDFFNVAATPDDLAV 250
Query: 211 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + ER P L
Sbjct: 251 LKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTISA--IERTPVL 308
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 120/202 (59%), Gaps = 20/202 (9%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 132
E+L G + GD G+DP GLSK+ F+KYQ EL+HARWAMLG G ++PE G + G
Sbjct: 193 EHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLG 252
Query: 133 PEAVWFKTGALLLDGN-TLNYFG-------KNIPINLVFAVIAEIVLVGGAEYYRITNGL 184
E VW+K GA L+ + TLN+ G I L+ A A VL+GG EY R
Sbjct: 253 -EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQA--VLMGGPEYARYVGIR 309
Query: 185 DLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
LE D+ +PGG PFDPL A D D F VKE+KNGRLAM AMLGFF+QA V
Sbjct: 310 SLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAV 369
Query: 236 TGEGPVENLAKHLSDPFANNLL 257
T GPV+N+ ++DP NN+
Sbjct: 370 TRVGPVQNVLDFVADPAHNNIF 391
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 123/215 (57%), Gaps = 32/215 (14%)
Query: 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 103
+ SS S PDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 54 VAASSDSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 110
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 161
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 111 EVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQS 169
Query: 162 VFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
+ A++A +++L+G E YR+ G PLG +VKE+KNGR
Sbjct: 170 ILAILACQVILMGAIEGYRVAGG--------------PLG-----------EVKELKNGR 204
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 205 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 239
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 127/233 (54%), Gaps = 30/233 (12%)
Query: 56 DRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
+RR +LP GLLD +++P Y+ G + GDYG+DP L + Y+A E+IHARWAML
Sbjct: 86 NRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDPLKLGAD-GKINDYRAAEVIHARWAMLA 144
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G +IPEA P VW +TG + LDG PI +FA I +I L
Sbjct: 145 IPGIVIPEALGI------PGGVWTETGKVFLDGEAGRPEILQNPI--IFAGI-QIALFAA 195
Query: 175 AEYYRIT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
E YR +G D D ++PGGP D +A P+ A+LKVKEIK
Sbjct: 196 VEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDPINPGGPLDFFNVASTPEDLAILKVKEIK 255
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
NGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + ER P L
Sbjct: 256 NGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTISA--IERTPVL 306
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHAR+AMLG
Sbjct: 34 PNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAMLG 91
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE K+G E+VWF+ GA + L+Y G I+ + VI+++VL
Sbjct: 92 ALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVVL 151
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M
Sbjct: 152 MGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSM 208
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Query: 84 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 143
G+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G G EAVWFK G+
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 144 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDP 198
+ L+Y G I + A+ A ++VL+G E YR+ G E DK++PGG FDP
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDP 119
Query: 199 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
LGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 120 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 166
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/208 (49%), Positives = 127/208 (61%), Gaps = 20/208 (9%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE+PGDYG+D GLSK F +Y +E++HARWAML A G + PE + GA
Sbjct: 122 DYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGA 181
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--------VIAEIVLVGGAEYYRIT 181
E VW++ G L G+TL+Y G IP L FA I + +L+ G EY R
Sbjct: 182 FHFIEPVWWRVGYSKLKGDTLDYLG--IP-GLHFAGSQGVLVIAICQALLMVGPEYARYC 238
Query: 182 NGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
LE D +PGGP FDPL L+ D LKVKEIKNGRLAM A LGF+ Q
Sbjct: 239 GIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQ 298
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVI 260
A +TG+GPV+NL +H+SDPF NNLL V+
Sbjct: 299 AALTGKGPVQNLVEHISDPFHNNLLCVL 326
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 5/183 (2%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
++PEYL GE PGDYG D F L + P++++K ++ EL++ RWAMLG G ++PE N
Sbjct: 30 DVPEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRWAMLGITGCLVPELINS-NP 88
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDL 186
G E VWFKTGA + ++Y G IN LV ++ + +L+G AEY RI +
Sbjct: 89 TPGFEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVVQALLMGVAEYARIKLSPEG 148
Query: 187 EDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
D +PGG FDPLG + DP+ FA LKVKEIKNGRLAM AM G F Q VTG P++NL
Sbjct: 149 NDAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLH 208
Query: 246 KHL 248
L
Sbjct: 209 DFL 211
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 116/204 (56%), Gaps = 13/204 (6%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YL G PGDY YDP L++ D F +Y +EL+HARWAMLGA G IPE G
Sbjct: 83 DYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGV 142
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGL 184
+ EA W+ G L G LNY G + I + I +++L+ G EY R
Sbjct: 143 SDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIE 202
Query: 185 DLE--------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
LE DK +PGG FDPLGL+KDP FA L+VKEIKNGRLA+ A +GF QA VT
Sbjct: 203 ALEPLGLYLPGDKNYPGGLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVT 262
Query: 237 GEGPVENLAKHLSDPFANNLLTVI 260
+GP+ +L +DP NN+ +
Sbjct: 263 RKGPIADLLDFAADPVHNNIFAYL 286
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE+PGDYG+D GL K P F KY +E++HARWAML A G ++PE + GA
Sbjct: 124 DYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGA 183
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 182
E VW++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 184 FHFVEPVWWRVGYSKLKGDTLDYLG--IPGFHFAGSQGVIVIAICQALLMVGPEYARYCG 241
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 242 IEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 301
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVI 260
TG+GPV+NL HL+DPF NNLL++
Sbjct: 302 AATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 10/210 (4%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
VS R+ + + P YL G PGD+G+DP GL++ P++F++Y+ ELIH RWAM
Sbjct: 36 VSNGSRVSMSSEWMPGQPRPAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAM 95
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVL 171
L G +IPEA N W T G Y G +P + ++A E +
Sbjct: 96 LAVPGVLIPEALGL--GNWVSAQQWAAT-----PGGQATYLGNPVPWGTLPIILAIEFLA 148
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
V E R D E + +PGGPFDPLG AKDP + K+KE+KNGRLA+ A LGF +
Sbjct: 149 VAFVEAKRGEEP-DHEKRKYPGGPFDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSV 207
Query: 232 QAYVT-GEGPVENLAKHLSDPFANNLLTVI 260
QA G GP+ENLA HLS+P+ANN+ +I
Sbjct: 208 QAIAYPGTGPLENLASHLSNPWANNIANII 237
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 105/156 (67%), Gaps = 6/156 (3%)
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I +
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 59
Query: 163 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 60 LAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNG 119
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
RLAMF+M GFF+QA VTG+GPV+NL HL+DP ANN
Sbjct: 120 RLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 113/190 (59%), Gaps = 28/190 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 65 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWV 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NGL
Sbjct: 125 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL- 182
Query: 186 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
PG LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 ------PG-----------------LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 219
Query: 246 KHLSDPFANN 255
HL +P ANN
Sbjct: 220 DHLDNPVANN 229
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 113/190 (59%), Gaps = 28/190 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 60 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWV 119
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 185
E VWFK GA + L+Y G + + AV+ ++VL+G E YRI NGL
Sbjct: 120 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI-NGL- 177
Query: 186 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
PG LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 178 ------PG-----------------LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 214
Query: 246 KHLSDPFANN 255
HL +P ANN
Sbjct: 215 DHLDNPVANN 224
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 118/217 (54%), Gaps = 12/217 (5%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
++P S R+ + L P YL G PGD+G+DP GL + PD+ +++ ELI
Sbjct: 33 TTPGAAFSNGSRVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELI 92
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
H RWAML G +IPEA N W T G Y G +P + +I
Sbjct: 93 HCRWAMLAVPGCLIPEALGL--GNWVEAQQWAAT-----PGGQATYLGTPVPWGTLPVII 145
Query: 167 A-EIVLVGGAEYYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
A E V + E RI G+ E + +PGG FDPLG +KDP +F K+KE+KNGRLA+
Sbjct: 146 AIEFVAIAFVESRRI--GVPSAEKRKYPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLALL 203
Query: 225 AMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVI 260
A LGF QA G GP++NLA HL+DP+ NN+ +I
Sbjct: 204 AFLGFCAQAAAYPGTGPLQNLATHLADPWHNNIANII 240
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 12/213 (5%)
Query: 51 GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 110
G VS + R + + P YL G PGD+G+DP GL + P + +Y+ ELIH RW
Sbjct: 35 GAVSGNSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRW 94
Query: 111 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-E 168
AML G ++PEA W K + G Y G+ +P + ++A E
Sbjct: 95 AMLAVPGILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIE 146
Query: 169 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+ + E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +G
Sbjct: 147 FLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVG 205
Query: 229 FFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
F + Q+ G GP+ENLA HL+DP+ NN+ VI
Sbjct: 206 FCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 105/171 (61%), Gaps = 9/171 (5%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAMLG
Sbjct: 155 PDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLG 211
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 171
A G + PE G G AVW+K GA + + LNY G I+ +V ++ + +
Sbjct: 212 ALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAI 271
Query: 172 VGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 219
+G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+KNG
Sbjct: 272 MGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNG 322
>gi|330318814|gb|AEC11067.1| chlorophyll a/b binding protein [Camellia sinensis]
Length = 107
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 82/100 (82%)
Query: 171 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
VGGAEY NGL+LEDKLHP GPFDPLGLAKDPDQ A+LKVKEIKNGRL MF +LGFF
Sbjct: 8 FVGGAEYSSFLNGLNLEDKLHPSGPFDPLGLAKDPDQGAILKVKEIKNGRLTMFPILGFF 67
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 270
+QA VTGEGPVE LAKH+ DPFAN LT ++G ERA TL
Sbjct: 68 IQASVTGEGPVEKLAKHVRDPFANKDLTKLAGFEERASTL 107
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Query: 91 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 150
++ P F++ +A E+IH RWAMLGA G I PE K+ E +WFK GA + L
Sbjct: 62 AQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGL 121
Query: 151 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKD 204
+Y G + + AV+ ++VL+G E +RI G+ + L+PGG FDPLGLA D
Sbjct: 122 DYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADD 181
Query: 205 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
P FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 182 PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 232
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 120/206 (58%), Gaps = 20/206 (9%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 132
++L GE GD G+DP L K P F++++ EL+HARWAMLG G ++PE G G
Sbjct: 71 QHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGVELG 130
Query: 133 PEAVWFKTGALLLDGN-TLNYFG-------KNIPINLVFAVIAEIVLVGGAEYYRITNGL 184
E VW+K GA L+ + TLN+ G I L+ A A VL+GG EY R
Sbjct: 131 -EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQA--VLMGGPEYARYVGIR 187
Query: 185 DLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
LE D+ +PGG PFDPL A D D F V+EIKNGRLAM AMLG F+QA V
Sbjct: 188 SLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLGLFVQAAV 247
Query: 236 TGEGPVENLAKHLSDPFANNLLTVIS 261
T +GPV+N+ + +SDP N+ T ++
Sbjct: 248 TKKGPVQNVMEFVSDPAGENIFTNVA 273
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+D GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKH 247
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q AY+ G GP+ENLA H
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATH 225
Query: 248 LSDPFANNLLTVI 260
L+DP+ NN+ VI
Sbjct: 226 LADPWHNNIGDVI 238
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 127/224 (56%), Gaps = 23/224 (10%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL- 105
SS S PDR +L G E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 45 SSGSPWYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSS 101
Query: 106 -----IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
W + + F N CG FK G+ + L+Y G N +
Sbjct: 102 TPDGPCWVPWD-VSSQSFCPVTVLNSVKL-CG-----FKAGSQIFSEGGLDYLG-NPSLG 153
Query: 161 LVFAVIA----EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
+++A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVK
Sbjct: 154 SRQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 213
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
E+KNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 121/210 (57%), Gaps = 21/210 (10%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWAML 113
P RR FLP+G PE+L G + GD G+DP GL S P D +Y+ EL+H RWAML
Sbjct: 178 PTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAML 235
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG-----NTLNYFGKNIPINLVFAVIA- 167
G G +PEA +FG E VW+K GA L+ + L G +I + AVIA
Sbjct: 236 GVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAA 295
Query: 168 -EIVLVGGAEYYRITNGLDL---------EDKLHPGG-PFDPLGLAKDPDQFALLKVKEI 216
++VL+GG EY R G+D D+ +PGG PFDP G++ D F KV E+
Sbjct: 296 CQLVLMGGPEYARKV-GIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEM 354
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
K+GRLAM AMLG F QA+ TG GPVENL +
Sbjct: 355 KHGRLAMVAMLGCFAQAWATGVGPVENLTE 384
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 19/227 (8%)
Query: 44 LTKSSPSGMVSP-------DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
L SS SG ++P R+ + + P +L G PGD+G+DP GL+ P++
Sbjct: 21 LAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPEN 80
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 155
F +++ E+ H RWAML G ++PEA W K + G Y G
Sbjct: 81 FERFKESEVYHCRWAMLAVPGILVPEALGL--------GNWVKAQEWAAVPGGQATYLGA 132
Query: 156 NIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
+P L ++ E V + AE+ R T D E K +PGG FDPLG +KDP +F K+K
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLK 191
Query: 215 EIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
EIKNGRLAM A +GF + Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 192 EIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDII 238
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 19/227 (8%)
Query: 44 LTKSSPSGMVSP-------DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 96
L SS SG ++P R+ + + P +L G PGD+G+DP GL+ P++
Sbjct: 21 LAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPEN 80
Query: 97 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 155
F +++ E+ H RWAML G ++PEA W K + G Y G
Sbjct: 81 FERFKESEVYHCRWAMLAVPGILVPEALGL--------GNWVKAQEWAAVPGGQATYLGA 132
Query: 156 NIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
+P L ++ E V + AE+ R T D E K +PGG FDPLG +KDP +F K+K
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLK 191
Query: 215 EIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
EIKNGRLAM A +GF + Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 192 EIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDII 238
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 115/211 (54%), Gaps = 12/211 (5%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
V+ R+ + L P YL G PGD+G+DP L + P++ +Y+ ELIH RWAM
Sbjct: 36 VNGTSRVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 95
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIA-EIV 170
L G +IPEA W K G Y G+ +P + V+A E V
Sbjct: 96 LAVPGILIPEALGL--------GNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFV 147
Query: 171 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
+ E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF
Sbjct: 148 AIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFC 206
Query: 231 L-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+ Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 207 VQQSAYPGTGPLENLATHLADPWHNNIGDII 237
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 111/193 (57%), Gaps = 18/193 (9%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
S P +LTG + GD G+DP L K P+ ++ EL+HARWAML G +PEA + G
Sbjct: 185 SSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAG 244
Query: 129 A----NCGPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIA--EIVLVGGAEYYR 179
A E VW+K GA L+G +LNY G I AVIA + VL+GG EY R
Sbjct: 245 ALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYAR 304
Query: 180 ITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
LE D +PGG PFDP GL+ D D+FA KV EI++GRLAM AMLG F
Sbjct: 305 YVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCF 364
Query: 231 LQAYVTGEGPVEN 243
QA VTGEGPV N
Sbjct: 365 AQAIVTGEGPVAN 377
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G +P +L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++PEYL GE PGDYG D F L++ P ++++ + EL++ RWAMLG G + PE N
Sbjct: 41 KDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGITGCLTPELINS-N 99
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLD 185
+ G E VWF TGA + ++Y G IN +FAVI + +L+G AEY RI +
Sbjct: 100 STPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQALLMGLAEYARIKFVPE 159
Query: 186 LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D +PGG FDPLG + DP+ A LKVKEIKNGRLAM AM G F Q VTG P++NL
Sbjct: 160 GADPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNL 219
Query: 245 AKHL 248
L
Sbjct: 220 HDWL 223
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 175
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ N+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHKNIGDIV 237
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 125/232 (53%), Gaps = 18/232 (7%)
Query: 32 LLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 91
L PS + S P ++ SG R+ + + P +L G PGD+G+DP GL+
Sbjct: 18 LAPSSNRSRLPVCAYATTSG------RVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLA 71
Query: 92 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTL 150
P++F +++ E+ H RWAML G ++PEA W + + G
Sbjct: 72 TVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL--------GNWVQAQEWAAEPGGQA 123
Query: 151 NYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFA 209
Y G +P L ++ E V + AE+ R T D E K +PGG FDPLG +KDP +F
Sbjct: 124 TYLGNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKKKYPGGAFDPLGFSKDPVKFE 182
Query: 210 LLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HLSDP+ NN+ +I
Sbjct: 183 EYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDII 234
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 102/155 (65%), Gaps = 6/155 (3%)
Query: 82 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 141
DYG+D GLS P+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 142 ALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 196
+ + L+Y G I+ + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 11/190 (5%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S+ + S ++ SP PDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 33 SMRKTGSKSVSSGSP--WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 146
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP FA
Sbjct: 147 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPKAFA 206
Query: 210 LLKVKEIKNG 219
LKVKEIKNG
Sbjct: 207 ELKVKEIKNG 216
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 115/195 (58%), Gaps = 17/195 (8%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P +L G + GD G+DP GL K DD + + EL+HARWAMLG G +PE ++G
Sbjct: 172 EYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHARWAMLGIVGVAVPELLERYGV 229
Query: 130 NCGPEAVWFKTGALLLDGN-TLNYFGK---NIPINLVFAVIA--EIVLVGGAEYYRITNG 183
E VW+K GA ++ + +L+YFG +I A+IA ++VL+GG EY R
Sbjct: 230 ADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARYVGI 289
Query: 184 LDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
LE DK +PGG PFDP ++ D D+F KV EIK+GRLAM AMLG QA+
Sbjct: 290 DSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMIAMLGVAAQAF 349
Query: 235 VTGEGPVENLAKHLS 249
VT GP+ENLA S
Sbjct: 350 VTRAGPIENLASVFS 364
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 6/159 (3%)
Query: 82 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 141
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 142 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 196
+ + L+Y G + + A+ A +++L+G E YR+ G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSF 119
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
DPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA V
Sbjct: 120 DPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIV 158
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 175
++PEA +G W K + G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 116/192 (60%), Gaps = 7/192 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDD-FSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ P Y TGE PGDYG+D GLS P+ F+K A E+I+ RWAMLGA G I PE K+
Sbjct: 62 QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWV 121
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRIT--NG 183
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI +G
Sbjct: 122 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRFDG 181
Query: 184 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
+ + L+PGG FD L L D F LKVKEIKNG LAMF+M GFF+QA VTG+ P+E
Sbjct: 182 VGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPLE 241
Query: 243 NLAKHLSDPFAN 254
+L HL + AN
Sbjct: 242 SLLDHLDNFVAN 253
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Query: 82 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 141
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 142 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 196
+ + L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 103/157 (65%), Gaps = 6/157 (3%)
Query: 77 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 136
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 137 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLH 191
WFK GA + L+Y G I + A+ A ++VL+G E YRI G E D L+
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLY 119
Query: 192 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
PGG FDPLGLA PDQFA LKVKE+KNGRLAMF+M G
Sbjct: 120 PGGAFDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 109
Query: 132 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 110 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 164
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 247
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 165 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 224
Query: 248 LSDPFANNLLTVI 260
L+DP+ NN+ ++
Sbjct: 225 LADPWHNNIGDIV 237
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-DLEDKL 190
W + G Y G +P F +I I + A NG DLE +
Sbjct: 115 VEAQKW-----AAIPGGQATYLGVPVPWGY-FPIILSIFFLKMAFAESQRNGEPDLEKRK 168
Query: 191 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 249
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLS
Sbjct: 169 YPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLS 228
Query: 250 DPFANNLLTVI 260
DP+ N+ +I
Sbjct: 229 DPWHKNIAEII 239
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 132 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W K A L DG YFG +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYFGVPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 247
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENL H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAH 226
Query: 248 LSDPFANNLLTVI 260
L+DP+ NN+ ++
Sbjct: 227 LADPWHNNIGDIV 239
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 114/210 (54%), Gaps = 10/210 (4%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
V+ R+ + + P YL G PGD+G+DP L + P++ +Y+ ELIH RWAM
Sbjct: 35 VNGTSRVTMSANWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 94
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVL 171
L G ++PEA N W T G Y G+ +P + ++A E V
Sbjct: 95 LAVPGILVPEALGL--GNWVKAQEWAAT-----PGGQATYLGQPVPWGTLPIILAIEFVA 147
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +
Sbjct: 148 IAFVEHQRSMEK-DTEKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICV 206
Query: 232 QAYVT-GEGPVENLAKHLSDPFANNLLTVI 260
Q G GP+ENLA HL+DP+ NN+ V+
Sbjct: 207 QQTAYPGTGPLENLATHLADPWHNNIGDVL 236
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 111/194 (57%), Gaps = 14/194 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 134
Query: 132 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 135 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 189
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 247
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 190 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 249
Query: 248 LSDPFANNLLTVIS 261
L+DP+ N T S
Sbjct: 250 LADPWHNTSATSSS 263
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIKMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 175
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 175
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 61
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 62 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 117
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 177
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ +I
Sbjct: 178 ADPWHNNIGDII 189
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W + + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 162
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F K+KEIKNGRLAM A + F + Q+ G GP+ENLA HL
Sbjct: 163 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHL 222
Query: 249 SDPFANNLLTVI 260
SDP+ NN+ +I
Sbjct: 223 SDPWHNNIGDII 234
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 54 SPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
S R+ + G L S+ P YL G +PG +G+DPFGL P + ++Q EL+H+RWAM
Sbjct: 25 SNGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAM 83
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
G AG + GA + W++ ++G Y G +P NL + E V +
Sbjct: 84 AGVAGAL--------GAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAI 135
Query: 173 GGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
GAE R D E + +PGG FDPLG +KD K+KE+KNGRLAM A +GF Q
Sbjct: 136 AGAEAQRNAE-PDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQ 194
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLT 258
TG+GP+E L HL+DP+ N T
Sbjct: 195 HAATGKGPLEALKLHLADPWGANFAT 220
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G+ +P L ++ E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKK 167
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 227
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ +I
Sbjct: 228 ADPWHNNIGDII 239
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 115/215 (53%), Gaps = 51/215 (23%)
Query: 41 SPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 100
SP + K S S PDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 8 SPFVGKPSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 64
Query: 101 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 160
+ E+IH RWAMLGA G + PE ++ G G EAVWFK
Sbjct: 65 RELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAA------------------- 104
Query: 161 LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 220
++A +++L+G E YRI G PLG +VKEIKNGR
Sbjct: 105 -IWAC--QVILMGAVEGYRIGGG--------------PLG-----------EVKEIKNGR 136
Query: 221 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 137 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 171
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K L G Y G +P + ++A E + + E+ R D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 117
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 177
Query: 249 SDPFANNL 256
+DP+ NN+
Sbjct: 178 ADPWHNNI 185
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 114
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G +P + ++A E V + AE+ R T D E K
Sbjct: 115 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQR-TMEKDPEKK 170
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG ++DP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 171 KYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHL 230
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ +I
Sbjct: 231 ADPWHNNIGDII 242
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+D GLS P+ + + EL+HARWAMLGA G ++PE +
Sbjct: 37 PSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGSLLPELLATYAGTP 96
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 186
E VWFK GA + L+Y G + + A++ +++L+G +E YR+ G ++
Sbjct: 97 LLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGLSEGYRLAGGPLGEV 156
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
D L+PG FDPLG ++DP+ L+ KEIKNGRLAM AMLG + QA VTG+GPV N
Sbjct: 157 GDALYPGASFDPLGFSEDPESLLELQTKEIKNGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 113
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 189
W + G+ YFG +P + V+A E + + E R NG D E +
Sbjct: 114 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR--NGEPDPEKR 166
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 226
Query: 249 SDPFANNLLTVI 260
SDP+ N+ +I
Sbjct: 227 SDPWHRNIAEII 238
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 112
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 113 VQAQEW-----AAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 166
Query: 191 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 249
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 226
Query: 250 DPFANNLLTVI 260
DP+ NN+ VI
Sbjct: 227 DPWHNNIGDVI 237
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 115/211 (54%), Gaps = 12/211 (5%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
V R+ + + + P +L G PGD+G+DP L P++ +Y+ ELIH RWAM
Sbjct: 38 VCNGSRVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAM 97
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVL 171
L G +IPEA N W + GN Y G +P + ++A E +
Sbjct: 98 LAVPGVLIPEALGL--GNWVEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLS 150
Query: 172 VGGAEYYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
+ E R NG D E + +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF
Sbjct: 151 IAFVESQR--NGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFC 208
Query: 231 LQAYVT-GEGPVENLAKHLSDPFANNLLTVI 260
+QA G GP+ENLA HLSDP+ N+ +I
Sbjct: 209 VQASANPGTGPLENLATHLSDPWHKNIAEII 239
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 79
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G YFG +P NL + E V + AE+ R T D E K
Sbjct: 80 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQR-TMEKDPEKK 135
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 136 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 195
Query: 249 SDPFANNL 256
+DP+ NN+
Sbjct: 196 ADPWHNNI 203
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 108/192 (56%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G +P + ++A E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEK-DPEKK 167
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 227
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ VI
Sbjct: 228 ADPWHNNIGNVI 239
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 189
W + GN Y G +P + ++A E + + E R NG D E +
Sbjct: 115 VEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR 167
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 249 SDPFANNLLTVI 260
SDP+ N+ +I
Sbjct: 228 SDPWHKNIAEII 239
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 111
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 167
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 227
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ V+
Sbjct: 228 ADPWHNNIGDVV 239
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 74
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 189
W + G+ YFG +P + V+A E + + E R NG D E +
Sbjct: 75 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR--NGEPDPEKR 127
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 128 KYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 187
Query: 249 SDPFANNLLTVI 260
SDP+ N+ +I
Sbjct: 188 SDPWHRNIAEII 199
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 69
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 70 VQAQEW-----AAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 123
Query: 191 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 249
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 124 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 183
Query: 250 DPFANNLLTVI 260
DP+ NN+ VI
Sbjct: 184 DPWHNNIGDVI 194
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
++ P++L+GE+PGDYG+DP GL + P +Y EL+HARWAMLGA G ++PE G
Sbjct: 137 TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAG 196
Query: 129 ANCGPEAVWFKTG-ALLLDGNTLNYFGK---NIPINLVFAVIA--EIVLVGGAEYYRITN 182
+ E W+ G A L G L Y G + A+IA +++L+ G EY R
Sbjct: 197 SATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAFCQVLLMFGPEYARACG 256
Query: 183 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
LE DK +PGG FDPL L+ D +++ ++V+EIKNGRLAM A LGF QA
Sbjct: 257 ISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGRLAMVAWLGFAAQA 316
Query: 234 YVTGEGPVENL 244
VT +GPV+NL
Sbjct: 317 AVTRQGPVQNL 327
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 168
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ ++ +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQ 59
Query: 169 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 168
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 59
Query: 169 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 168
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 59
Query: 169 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 124/219 (56%), Gaps = 33/219 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 68 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 126
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R +
Sbjct: 127 AGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRFQDWYN 180
Query: 184 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 181 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 240
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 265
LG+F+QA VTG GP +NL HL+DP NN+LT + GN E
Sbjct: 241 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKGNKE 279
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 348 SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGK 406
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R+ +
Sbjct: 407 AGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRLQDWYN 460
Query: 184 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 461 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 520
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 521 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +++ ELIH WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGL----- 105
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K + G Y G +P + ++A E + + E+ R + G D E K
Sbjct: 106 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR-SMGKDPEKK 161
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP F KVKE+KNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 162 KYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 221
Query: 249 SDPFANNLLTVI 260
+DP+ NN+ +I
Sbjct: 222 ADPWHNNIGNII 233
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP L + P++ +++ ELIH RWAML G
Sbjct: 41 RITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGA 175
++PEA W K + G Y G+ +P L ++ E + +
Sbjct: 101 ILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ NN+ +I
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDII 237
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 168
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 59
Query: 169 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 60 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 119
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 125/249 (50%), Gaps = 29/249 (11%)
Query: 10 LQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRS 69
+QV Q +SP+ + + PS+ ++ +G +P S
Sbjct: 1 MQVMQRTFGASPVAKQAVNRSVVRPSIR-------VQAQRAGNFAPG------------S 41
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E EYL ++PG++ +DP L K+ +Y+ ELIH RWAMLGAAG + E
Sbjct: 42 EPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL--- 97
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W+ + G+ +FG +P ++ + E+V + AE R N D+E +
Sbjct: 98 -----GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDN-QDMEKR 151
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
L+PGG FDPLG +KDP F K+KE+KNGRLAM A LGF Q TG+ +E L HLS
Sbjct: 152 LYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGDHLS 211
Query: 250 DPFANNLLT 258
PF NN T
Sbjct: 212 SPFFNNFAT 220
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 140/274 (51%), Gaps = 40/274 (14%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
Q LL LL P + S +P SSP DR+++ +
Sbjct: 4 QALLSGRQLLGRPVQSAVSRSSARKAPFVVRASSSPPAKQGADRQLWFAS-----KQSLS 58
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE F K
Sbjct: 59 YLDGTLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKM 117
Query: 128 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G PE WFKTG + G T NY+ + + + + L+G AE+ R+ +
Sbjct: 118 GI-IPPETALPWFKTGVIPPAG-TYNYWADSYTL-----FVFNMALMGFAEHRRLQDWYN 170
Query: 184 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+
Sbjct: 171 PGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAI 230
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 231 LGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 14/191 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 132 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 247
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+EN H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTH 226
Query: 248 LSDPFANNLLT 258
L+DP+ N T
Sbjct: 227 LADPWHNTSAT 237
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 104/188 (55%), Gaps = 12/188 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K L G Y G +P L ++ E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKK 166
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDPLG +KDP +F K+KE+KNGRLA+ A +G +Q G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHL 226
Query: 249 SDPFANNL 256
+DP+ NN+
Sbjct: 227 ADPWHNNI 234
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 123
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 124 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 182
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 183 G-----------LDLE-------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
L E D +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 YYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 126/235 (53%), Gaps = 20/235 (8%)
Query: 27 RRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 86
R +P L + S +R FL G L+ E P +L G + GD G+D
Sbjct: 6 RERPALDAEKARKEMERAEARGRSAFYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFD 62
Query: 87 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLL 145
P L+ K +D +Y+ EL+H RWAMLG G +PE ++FG AN G E VW+K GA +
Sbjct: 63 PLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLG-EPVWWKVGAAKM 121
Query: 146 DGNT----LNYFGKNIPINLVFAVIA--EIVLVGGAEYYRITNGLDLE--------DKLH 191
+ + L + G +I AVIA ++VL+GG EY R LE DK +
Sbjct: 122 NSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDY 181
Query: 192 PGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
PGG PFDP + D ++F KV EIK+ RLAM A LG +QA VT +GP+ENLA
Sbjct: 182 PGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQGPIENLA 236
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 123
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 124 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 182
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQETAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 183 G-----------LDLE-------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
L E D +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 FYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 53 VSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
VS R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWA
Sbjct: 26 VSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWA 85
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLG AG + E W+ ++G +FG +P +L + E V
Sbjct: 86 MLGVAGSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVA 137
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ AE R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF
Sbjct: 138 MAAAEGQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVA 193
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLT 258
Q TG+GP+ L +HL++P+ N T
Sbjct: 194 QHAATGKGPIAALGEHLANPWGANFAT 220
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 53 VSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
VS R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWA
Sbjct: 22 VSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWA 81
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLG AG + E W+ ++G +FG +P +L + E V
Sbjct: 82 MLGVAGSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVA 133
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ AE R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF
Sbjct: 134 MAAAEGQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVA 189
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLT 258
Q TG+GP+ L +HL++P+ N T
Sbjct: 190 QHAATGKGPIAALGEHLANPWGANFAT 216
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 127/246 (51%), Gaps = 22/246 (8%)
Query: 35 SLSPSPSPPLTKSSPSGM-----VSPDRRIFLPEGLLDRS------EIPEYLTGEVPGDY 83
+LS P P + S M SP R F + +R+ + P YL G +PGDY
Sbjct: 13 TLSSRPPAPFSSRSTVAMPGHHAESPRAR-FAVRAIAERATWLPGLDPPAYLDGTLPGDY 71
Query: 84 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 143
G+DP GL ++P+D Y EL+H R+AM G AG + + G P VWF+ GA
Sbjct: 72 GFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGNLP--VWFEAGAT 129
Query: 144 LLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL------HPGGP- 195
D NT F + + + V + L +E L +PGGP
Sbjct: 130 KFDFANTTALFFVQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPGYPGGPL 189
Query: 196 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
F+P+GLAKD + +K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N
Sbjct: 190 FNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDNLLTHLSDPFNKN 249
Query: 256 LLTVIS 261
++ ++
Sbjct: 250 IIHALT 255
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 171
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 2614 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 2672
Query: 172 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 229
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 2673 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 2732
Query: 230 FLQAYVTGEGPVENLAKHLSDPFANN 255
F+QA VTG+GP+ENL HL++P NN
Sbjct: 2733 FVQAIVTGKGPIENLNDHLANPAVNN 2758
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 137/264 (51%), Gaps = 54/264 (20%)
Query: 35 SLSPSPSPPLTKS-----------SPSGMV----SPDRRIFLPEGLLDRSEIPEYLTGEV 79
+LSP P L++S SP + S +R +LP GL + P +L G +
Sbjct: 17 TLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLP-GL----DPPPHLDGTL 71
Query: 80 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 139
PGD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 72 PGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFE 129
Query: 140 TGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------------L 186
GA D NT F +++L+G AE R + ++ +
Sbjct: 130 AGATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEEGTFLGI 177
Query: 187 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
E L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT G
Sbjct: 178 EAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVG 237
Query: 240 PVENLAKHLSDPFANNLLTVISGN 263
P++NL HLSDPF N++ +S +
Sbjct: 238 PIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 117/220 (53%), Gaps = 16/220 (7%)
Query: 41 SPPLTKSSPSGMVSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 99
+P T + + P R + G L S+ P YL +P YG+DP GL+K+ +
Sbjct: 6 APSATVRATFNVQRPRARTVMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQR 64
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
++ E+IH RWAMLGAAG + E +G W+ L+ G + YFG +IP
Sbjct: 65 FKESEVIHGRWAMLGAAGVLGVEVLG-YGN-------WYDAPLPLVQGGSATYFGASIPF 116
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAK-DPDQFALLKVKEIKN 218
+L E + GAE +R + E +++PGGPFDP G++K + D+ L+ KEIKN
Sbjct: 117 DLGTLAAIEFAAMAGAESFR--GAAEPEKRVYPGGPFDPAGMSKGNQDE---LRTKEIKN 171
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
GRLAM A LGF Q TG P+E L HL++P N T
Sbjct: 172 GRLAMIACLGFVAQHAATGASPLEALGAHLANPMVANFAT 211
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 111/213 (52%), Gaps = 59/213 (27%)
Query: 45 TKSSPSGM-VSPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
KS+P + PDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 5 VKSTPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
E+IH RWAMLGA G + PE +K G FG+ + I +
Sbjct: 61 LEVIHCRWAMLGALGCVFPEILSKNGVK----------------------FGEAVCILAI 98
Query: 163 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 222
+A ++VL+G E YR+ LKVKEIKNGRLA
Sbjct: 99 WA--CQVVLMGFVEGYRVE-----------------------------LKVKEIKNGRLA 127
Query: 223 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
MF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 128 MFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 160
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 137/264 (51%), Gaps = 54/264 (20%)
Query: 35 SLSPSPSPPLTKS-----------SPSGMV----SPDRRIFLPEGLLDRSEIPEYLTGEV 79
+LSP P L++S SP + S +R +LP GL + P +L G +
Sbjct: 17 TLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLP-GL----DPPPHLDGTL 71
Query: 80 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 139
PGD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 72 PGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP--VWFE 129
Query: 140 TGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------------L 186
GA D NT F +++L+G AE R + ++ +
Sbjct: 130 AGATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEEGTFLGI 177
Query: 187 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
E L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT G
Sbjct: 178 EAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVG 237
Query: 240 PVENLAKHLSDPFANNLLTVISGN 263
P++NL HLSDPF N++ +S +
Sbjct: 238 PIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 53 VSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
VS R+ + G L S+ P +L ++PG+YG+DP L K P ++ E+IH RWA
Sbjct: 26 VSNGCRVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWA 85
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLG AG + E W+ + G +FG +P +L + E V
Sbjct: 86 MLGVAGALAVELLGY--------GNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVA 137
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ AE R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF
Sbjct: 138 MAAAEGQRN----DAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIA 193
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLT 258
Q TG+GP+ L +HL++P+ N T
Sbjct: 194 QHAATGKGPLAALGEHLANPWGANFAT 220
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 110 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 167
WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 46 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 104
Query: 168 -EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 105 VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 164
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP + L+DP NN
Sbjct: 165 SMFGFFVQAIVTGKGPPREPRRPLADPVNNN 195
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGY--GNW 68
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNG-LDLEDK 189
W T G Y G +P NL + E + + E R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR--NGESDPEKR 121
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGGPFDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGPFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHL 180
Query: 249 SDPFANNLLTVI 260
+DP+ N + V+
Sbjct: 181 ADPWHNTIAHVL 192
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
++ + + P T SS S PDR +L G E P YLTGE PGDYG+D GLS P
Sbjct: 19 TMRKTVAKPKTVSSGSPWYGPDRVKYL--GPFS-GEAPSYLTGEFPGDYGWDTAGLSADP 75
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 76 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 134
Query: 155 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 209
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP FA
Sbjct: 135 NPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPKAFA 194
Query: 210 LLKVKE 215
LKV E
Sbjct: 195 ELKVNE 200
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 115/210 (54%), Gaps = 34/210 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGDYG+DP GL ++P D Y EL+H R+AM G AG + + G +
Sbjct: 62 PPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGISN 121
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITNG---- 183
P VWF+ GA D NT F +++L+G E Y I N
Sbjct: 122 LP--VWFEAGATKFDFANTTALF------------FVQLLLMGFVETKRYMDIVNPGSQA 167
Query: 184 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
L +E L +PGGP F+P+GLAKD +K+KEIKNGRLAM AMLGFF+
Sbjct: 168 EEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFV 227
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
QA VT GP++NL HLSDPF NN++ +
Sbjct: 228 QASVTHVGPIDNLLIHLSDPFNNNIIHAFT 257
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 111
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGL-DLEDK 189
W T G Y G +P NL + E + + AE R NG D E +
Sbjct: 112 VSAQKWAAT-----PGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR--NGEPDPEKR 164
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 165 KYPGGAFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFAVQAIAYPGTGPLENLKTHL 223
Query: 249 SDPFANNLLTVI 260
+DP+ N + VI
Sbjct: 224 ADPWHNTIAHVI 235
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 122/213 (57%), Gaps = 33/213 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKP 177
Query: 184 --------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 122/213 (57%), Gaps = 33/213 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKP 177
Query: 184 --------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 12/188 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G PGD+G+DP GL+ P++ +++ E+ H RWAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGL----- 80
Query: 132 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 81 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 136
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY-VTGEGPVENLAKHL 248
+PGG FDPLG +KDP + K+KEI+NGRLAM A +GF +Q G GP+ENLA HL
Sbjct: 137 KYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHL 196
Query: 249 SDPFANNL 256
+DP+ NN+
Sbjct: 197 ADPWHNNI 204
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 33/213 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 365 YLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGKA 423
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R+ +
Sbjct: 424 GLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRLQDWYNP 477
Query: 184 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+L
Sbjct: 478 GSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 537
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 538 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 33/214 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 69 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 127
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R +
Sbjct: 128 GLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRFQDWYNP 181
Query: 184 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+L
Sbjct: 182 GSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 241
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
G+F+QA VTG GP +NL HL+DP NN+LT ++
Sbjct: 242 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSLN 275
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 39/227 (17%)
Query: 52 MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
+V +R +LP SEIP YL GE+PGD+G+DP L + P YQ EL + RWA
Sbjct: 33 VVRAERASWLPG-----SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWA 87
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 169
ML AAG + + GA GP A WFK + YF P + +F I E+
Sbjct: 88 MLAAAGILFVDLLGHLGAG-GPAAATPWFKA-------SDFTYFA---PTSTLF--IVEL 134
Query: 170 VLVGGAEYYRITN----GLDLEDKL-------------HPGGPFDPLGLAKDPDQFALLK 212
+L E R + G +D + +PGG FDPLG +K A LK
Sbjct: 135 LLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYSK--GNMAELK 192
Query: 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
+KEIKN RLAM A+LGFF+QA TG+ P+++L+ HL+DP++NN+ +
Sbjct: 193 LKEIKNARLAMLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNVFGI 239
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 121/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 68 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGK 126
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R +
Sbjct: 127 AGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRFQDWYN 180
Query: 184 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 181 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 240
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 241 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 103/190 (54%), Gaps = 12/190 (6%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG AG + E
Sbjct: 7 SDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 64
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W+ ++G +FG ++P +L + E V + AE R D
Sbjct: 65 ------GNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQRG----DAGG 114
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
++PGG FDPLG AKD + LK+KE+KNGRLAM A LGF Q TG+GP+ L +HL
Sbjct: 115 VVYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGPIAALGEHL 174
Query: 249 SDPFANNLLT 258
S+P+ N T
Sbjct: 175 SNPWGANFAT 184
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 47/273 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + S P+ S+ ++K + + + +PP+ + + +R +++ S+
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAAAPPVKQGA-------NRPLWVAS-----SQSLS 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GLIPAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNP 177
Query: 184 --------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 120/232 (51%), Gaps = 33/232 (14%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQA 102
S S + R+ +LP S+IP +L + G++G+DP GL K P + YQ
Sbjct: 11 SRKSVVTCVARQSWLPG-----SQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQ 65
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
ELIH R AM G AG +IP K GA PE W+ G + ++ N+ +G + + L
Sbjct: 66 AELIHCRTAMTGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGTLLAVQLF 122
Query: 163 FAVIAEIVLVGGAEYYRI----TNG-----LDLEDKL-------HPGGPFDPLGLAKDPD 206
E+ + I + G L E L +PGGPFDPLGL+K+ D
Sbjct: 123 LCGFVEV-----KRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEAD 177
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
++A K+KE+KNGRLAM A LGF Q Y TG GPV+NL HL DP+ N T
Sbjct: 178 KWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNYAT 229
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 146/273 (53%), Gaps = 47/273 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + S P+ S+ ++K + + + +PP+ + + +R ++ S+
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQGA-------NRPLWFAS-----SQSLS 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GLIPAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNP 177
Query: 184 --------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 146/273 (53%), Gaps = 47/273 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + + P +S+ RRK + + + +PP+ + + +R ++ S+
Sbjct: 19 RQIFGTKPAVSTSRRKSSFV--VKATSTPPVKQGA-------NRPLWFAS-----SQSLT 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T +Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GLIPAETALPWFQTGVIPPAG-TYSYWADNYTL-----FVLEMALMGFAEHRRLQDWYNP 177
Query: 184 --------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE +PGGPF +PLG K+ LK+KEIKNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 13/192 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 68
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNG-LDLEDK 189
W T G Y G +P + ++A E + + AE R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR--NGESDPEKR 121
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 248
+PGG FDP+G +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGAFDPMGFSKGAN-LEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHL 180
Query: 249 SDPFANNLLTVI 260
+DP+ N + ++
Sbjct: 181 ADPWHNTIANIL 192
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 168
MLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 59
Query: 169 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 119
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 120/227 (52%), Gaps = 23/227 (10%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQA 102
S S + R+ +LP S+IP +L + G++G+DP GL K P YQ
Sbjct: 17 SRKSVVTCVARQSWLPG-----SQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQ 71
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
ELIH R AM G AG +IP K GA PE W+ G + ++ N+ +G + + L
Sbjct: 72 AELIHCRTAMAGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGSLLAVQLF 128
Query: 163 FAVIAEI-----VLVGGAE-----YYRITNGLDLEDKL-HPGGPFDPLGLAKDPDQFALL 211
E + G++ + L +L +PGGPFDPLGL+K+ D++A
Sbjct: 129 LCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKWADW 188
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
K+KE+KNGRLAM A LGF Q Y TG GPV+NLA HL DP+ N T
Sbjct: 189 KLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYAT 235
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 21/202 (10%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++Y+ E+++ RWAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG + PE + W + G Y G +P + E +
Sbjct: 93 AGMLAPELVG--------QGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCL--- 141
Query: 176 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
+ I+ GL+ + +++PGG FDPLG KD + KVKE++NGRLAM A +G + Q
Sbjct: 142 SWVEISRGLEKDPMKRIYPGGAFDPLGFGKDE----VNKVKELRNGRLAMVAFVGMWCQG 197
Query: 234 YVTGEGPVENLAKHLSDPFANN 255
G GPV NL HL+DP NN
Sbjct: 198 IHVGGGPVSNLMDHLADPLHNN 219
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 121/215 (56%), Gaps = 35/215 (16%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE F
Sbjct: 64 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGS 122
Query: 127 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 183
G PE WFKTG + G T NY+ P L + E+ L+G AE+ R +
Sbjct: 123 LGL-IPPETALPWFKTGVIPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWA 175
Query: 184 ----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A
Sbjct: 176 KPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLA 235
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+LG+F+Q VTG GP +NL HLSDP NN+LT +
Sbjct: 236 ILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSL 270
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+HARWAMLG
Sbjct: 52 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLG 106
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
+G +IPE K G W++ G T YF P L +A + V G
Sbjct: 107 VSGILIPELLEKMGYV--ENYSWYEAG-------TQEYFAD--PTTLFIVQLALMGWVEG 155
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ + N +D+E KL +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 156 RRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG 215
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
RLAM A +GF+ QA TG+GP+ENL HL+DP N+ + +
Sbjct: 216 RLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFT 257
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 146/274 (53%), Gaps = 49/274 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + S P+ S+ ++K + + + +PP+ + + +R ++ S+
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKATATPPVKQGA-------NRPLWFAS-----SQSLS 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G PE WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GL-IPPETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYN 176
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 177 PGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 236
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 LGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG + T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 111/227 (48%), Gaps = 37/227 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+PDR I+ P S P +L G +PGD+G+DPFGL P+ EL+H RWAM
Sbjct: 53 AAPDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAM 107
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 108 LGAAGIFIPEFLTKIGILSTPS--WYTAGEQQYFTDTTTLF------------IIELILI 153
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 154 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTK 213
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
EIKNGRLAM A++G + QA TG GP++NL HL+DP N+ +
Sbjct: 214 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAFT 260
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 109
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 75 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 128
Query: 110 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + + + V+
Sbjct: 129 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVL 185
Query: 167 AEIVLVGGAEYYRITNG------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLK 212
+ + + YR L LE D +PGG F+ LG KD LK
Sbjct: 186 MQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLK 245
Query: 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 246 LKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 114/224 (50%), Gaps = 37/224 (16%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 13 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 113
Query: 176 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 217
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 114 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 173
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L +S
Sbjct: 174 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 173
G + PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 2 GCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMG 60
Query: 174 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+
Sbjct: 61 AVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV 120
Query: 232 QAYVTGEGPVENLAKHLSDPFANN 255
QA VTG+GP+ENLA HL+DP NN
Sbjct: 121 QAIVTGKGPLENLADHLADPVNNN 144
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 109
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 53 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 106
Query: 110 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + + + V+
Sbjct: 107 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVL 163
Query: 167 AEIVLVGGAEYYRITNG------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLK 212
+ + + YR L LE D +PGG F+ LG KD LK
Sbjct: 164 MQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLK 223
Query: 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 224 LKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 100/157 (63%), Gaps = 8/157 (5%)
Query: 82 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 141
DYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 142 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 195
A + L+Y G + + AV+ ++VL+G E +RI NGLD + L+PGG
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 196 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 YFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + + G +
Sbjct: 118 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSD 177
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 183
P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 178 LP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMDFKNPGSQA 223
Query: 184 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +
Sbjct: 224 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMV 283
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
QA VT GP++NL HLSDPF N++ S +
Sbjct: 284 QASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 315
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 92/135 (68%), Gaps = 10/135 (7%)
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
KFG EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 3 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 57
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 58 GPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 117
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 118 LENLADHLADPVNNN 132
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 114/226 (50%), Gaps = 37/226 (16%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 164
Query: 176 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 217
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 165 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 224
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L + G
Sbjct: 225 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSLFGK 270
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 12/178 (6%)
Query: 81 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 140
GD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA FG W K
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-FGN-------WVKA 52
Query: 141 GALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDP 198
+ G Y G +P L ++ E + + E+ R D E + +PGG FDP
Sbjct: 53 QEWAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKRKYPGGAFDP 111
Query: 199 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 255
LG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ N
Sbjct: 112 LGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 37/240 (15%)
Query: 46 KSSPSGMVS------PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 99
K++ SG+ S PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPETLKW 97
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
+ EL+HARWAML AG ++PE F G W+ D + YF P
Sbjct: 98 FAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD--PT 146
Query: 160 NLVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-D 204
L+ A +A + V G + + N +D++ KL +PGG FDP+ +
Sbjct: 147 TLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGS 206
Query: 205 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ + S +
Sbjct: 207 PEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGS 266
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 37/240 (15%)
Query: 46 KSSPSGMVS------PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 99
K++ SG+ S PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPETLKW 97
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 159
+ EL+HARWAML AG ++PE F G W+ D + YF P
Sbjct: 98 FAQAELMHARWAMLAVAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD--PT 146
Query: 160 NLVFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-D 204
L+ A +A + V G + + N +D++ KL +PGG FDP+ +
Sbjct: 147 TLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGS 206
Query: 205 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ + S +
Sbjct: 207 PEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGS 266
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + + G +
Sbjct: 72 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSD 131
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 183
P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 132 LP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMDFKNPGSQA 177
Query: 184 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +
Sbjct: 178 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMV 237
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
QA VT GP++NL HLSDPF N++ S +
Sbjct: 238 QASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 118/246 (47%), Gaps = 39/246 (15%)
Query: 36 LSPSPSPPLTKSSPSGMVS--PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 93
+S + P +S+ + V+ PDR ++ P S P +L G +PGD+G+DP GL+
Sbjct: 42 VSKYSTTPTARSATTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASD 96
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P+ Q EL+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 97 PESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF 154
Query: 154 GKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PF 196
I E+VL+G AE R N L D +PGG F
Sbjct: 155 ------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 202
Query: 197 DPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
DPLG P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 203 DPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 262
Query: 256 LLTVIS 261
+ S
Sbjct: 263 IFAAFS 268
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + + G +
Sbjct: 72 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSD 131
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 183
P VWF+ GA D NT F ++ L+G AE R +
Sbjct: 132 LP--VWFEAGAAKFDFANTTALF------------FVQLFLMGFAETKRYMDFKNPGSQA 177
Query: 184 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +
Sbjct: 178 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMV 237
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
QA VT GP++NL HLSDPF N++ S +
Sbjct: 238 QASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLA 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG +IPE + G F D T YF P L + +++L+G
Sbjct: 109 AAGILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQLILMGW 154
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
E R + +D++ KL +PGG FDP + P+ ++ KEI
Sbjct: 155 IEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLA 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG +IPE + G F D T YF P L + +++L+G
Sbjct: 109 AAGILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQLILMGW 154
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
E R + +D++ KL +PGG FDP + P+ ++ KEI
Sbjct: 155 IEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEI 214
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 215 KNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 145/273 (53%), Gaps = 47/273 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + S P+ S+ ++K + + + +PP+ + + +R ++ S+
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQGA-------NRPLWFAS-----SQSLS 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GLIPAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNP 177
Query: 184 --------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 237
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
G+F+Q VTG GP +NL HL+ P NN+LT +
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSL 270
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 173
G PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G
Sbjct: 1 GASFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 59
Query: 174 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+
Sbjct: 60 AVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 119
Query: 232 QAYVTGEGPVENLAKHLSDPFANN 255
QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 QAIVTGKGPLENLADHLADPVNNN 143
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F++A VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVRALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 32/213 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD+G+DP GL + P+ Y EL+H+R+AMLG G ++ + G N
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNS 127
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P +WF+ GA+ K N V+ +++L+G AE R + +
Sbjct: 128 IP--IWFEAGAV-----------KYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAK 174
Query: 186 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
LE L +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 175 EGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQ 234
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 265
A VT GP++NL +HLS+P+ ++ +++ ++
Sbjct: 235 ASVTHVGPIDNLVEHLSNPWHKTIIQILASSSS 267
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Query: 79 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 138
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W
Sbjct: 2 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WV 53
Query: 139 KTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPF 196
K L G Y G +P + ++A E + + E+ R D E K +PGG F
Sbjct: 54 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAF 112
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 252
DPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 113 DPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 55/238 (23%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKP---------------------------DDFS--- 98
++ P+YL G + GDYG+DP GL K P +D S
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 99 --------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 144
+++ ELIH RWAML G I E F W G +
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--------VTWQDAGKVE 182
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 203
LD +YFG ++P + V E++++G E+ R T LD E +L+PGG FDPLGLA
Sbjct: 183 LDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRLYPGGSYFDPLGLAA 240
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLSDP ++ S
Sbjct: 241 DPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPLHTTIIDTFS 298
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 10/135 (7%)
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
KFG EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI
Sbjct: 12 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 66
Query: 183 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 67 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 126
Query: 241 VENLAKHLSDPFANN 255
+ENLA HL+DP NN
Sbjct: 127 LENLADHLADPVNNN 141
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 55/238 (23%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKP---------------------------DDFS--- 98
++ P+YL G + GDYG+DP GL K P +D S
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 99 --------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 144
+++ ELIH RWAML G I E F W G +
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--------VTWQDAGKVE 182
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 203
LD +YFG ++P + V E++++G E+ R T LD E +L+PGG FDPLGLA
Sbjct: 183 LDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRLYPGGSYFDPLGLAA 240
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLSDP ++ S
Sbjct: 241 DPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPLHTTIIDTFS 298
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P+ SSPS V + +LP GL P YL G +PGD G+DP GL++ P++ +
Sbjct: 38 PMASSSPSFKVEAKKGEWLP-GLPS----PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQ 92
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
EL++ RWAMLG AG ++PE F K G P+ W+ D YF + + ++
Sbjct: 93 AELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ--WY-------DAGKAEYFASSSTLFVI 143
Query: 163 FAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFA 209
++ V + + I N G +D + +PGG F+PL A +
Sbjct: 144 EFILFHYVEI--RRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEA-- 199
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
K KE+ NGRLAM A LGF +Q VTG+GP ENL +H+SDP+ N ++ SGN
Sbjct: 200 --KEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHISDPWHNTIVQTFSGN 251
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 127/263 (48%), Gaps = 37/263 (14%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEY 74
T L ++P + R+ ++ P+P T S S RR++ P E P Y
Sbjct: 6 TALNAAPAFLTGRK---VVSKARAGPAPRSTFQV-SAAASQGRRLWAPG-----VEAPSY 56
Query: 75 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 134
L GE+ GDYG+DP GL KP+ Y+ EL+HARWAML AG + E
Sbjct: 57 LNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVK--------P 108
Query: 135 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL---- 190
V+F L + +N+ G +NL + E +L E R + + +D +
Sbjct: 109 GVFFYNAGLPENLPGINFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQD-IKKKDSVNQDP 167
Query: 191 -------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
+PGG FDP G +K F ++ KEIKNGRLAM A +GF +QA TG
Sbjct: 168 IFKGNKVPNPELGYPGGIFDPFGFSK--GNFKEVQTKEIKNGRLAMVAFVGFIIQAQATG 225
Query: 238 EGPVENLAKHLSDPFANNLLTVI 260
+GP+ NL HL++PF NN+ I
Sbjct: 226 QGPLANLGAHLANPFGNNITKNI 248
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR I+ P S PE+L G +PGD+G+DP GLS PD EL+H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLG 104
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAG-------EQEYFTDKTTLFVV-----ELILIGW 150
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 107/193 (55%), Gaps = 14/193 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G P P GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 85
Query: 132 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 86 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 140
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 247
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 141 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 200
Query: 248 LSDPFANNLLTVI 260
L+DP+ NN+ ++
Sbjct: 201 LADPWHNNIGDIV 213
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 110/210 (52%), Gaps = 34/210 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G + GD+G+DP GL + P D Y EL+H+R+AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 185
P VWF+ GA D +T F + +++L+G E R + +
Sbjct: 72 IP--VWFEAGATKFDFADTTTLF------------VVQLILMGFVETKRWMDIVKPGSQA 117
Query: 186 LEDKL-------------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
ED +PGGP F+PLG A DP + L+ KEIKNGRLAM AM+GF +
Sbjct: 118 AEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMV 177
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
QAYVT GP+ENL HLSDP N ++ I+
Sbjct: 178 QAYVTKTGPIENLLTHLSDPVHNTIIQRIA 207
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 114/235 (48%), Gaps = 37/235 (15%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S + SPS + S+ + PDR ++ P S P +L G +PGD+G+DP GL P
Sbjct: 42 SSTASPSRVRSTSTVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF- 153
Query: 155 KNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFD 197
I E+V +G AE R N L D +PGG FD
Sbjct: 154 -----------IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 202
Query: 198 PLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
PLG + P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 203 PLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 131/251 (52%), Gaps = 39/251 (15%)
Query: 42 PPLTKSSPSGMVSPDRRIFLPEGLLDR------SEIPEYLTGEVPGDYGYDPFGLSKKPD 95
P S G+V + +G +DR + YL G +PGDYG+DP GLS P+
Sbjct: 29 PSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PE 87
Query: 96 DFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGN 148
++ AY E+I+ R+AMLGA G I PE K G A+ WF+TG + G
Sbjct: 88 GTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG- 146
Query: 149 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL------- 190
T NY+ N + + E+ L+G AE+ R + L LE
Sbjct: 147 TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPA 201
Query: 191 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
+PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL H++
Sbjct: 202 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVA 261
Query: 250 DPFANNLLTVI 260
DP NN+LT +
Sbjct: 262 DPVNNNVLTSL 272
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 107/217 (49%), Gaps = 37/217 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAM
Sbjct: 62 ADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAM 116
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G L +T F I E++ +
Sbjct: 117 LGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELIFI 162
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 163 GWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 222
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
EIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 60/255 (23%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------- 95
+ P S DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 1 AQPKSGFSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQ 55
Query: 96 --------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEA 123
+++ ELIH RWAML G + E
Sbjct: 56 NLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEG 115
Query: 124 FNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 182
W G + L++G++ Y G+ +P ++ + E++++G E+ R
Sbjct: 116 LTGI--------TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE 165
Query: 183 GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 242
LD E +L+PGG FDPLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+
Sbjct: 166 -LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN 224
Query: 243 NLAKHLSDPFANNLL 257
N HLSDP +L
Sbjct: 225 NWVTHLSDPLHTTIL 239
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAG-------EQEYFTDKTTLFVV-----ELILIGW 150
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 107/217 (49%), Gaps = 37/217 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+PDR I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAM
Sbjct: 54 AAPDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAM 108
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 109 LGAAGIFIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF------------IIELILI 154
Query: 173 GGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 155 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTK 214
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 215 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAG-------EQEYFTDKTTLFVV-----ELILIGW 150
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G IIPE + G F D + YF + + +A++VL+G
Sbjct: 118 VTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGW 163
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R + +D+E K +PGG FD + + P+ +L+ KEI
Sbjct: 164 AEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEI 223
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
KNGRLAM A LGF QA T + P+ENL HL+DP N+ +V
Sbjct: 224 KNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 142/274 (51%), Gaps = 49/274 (17%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ +L S PL S R+ + + + +PP+ + + DR ++ +
Sbjct: 19 RQILGSRPLQSPSRKSSSFV--VRAASTPPVKQGA-------DRPLWFAS-----KQSLT 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKL 123
Query: 128 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G PE WFKTG G T NY+ P L + E+ L+G AE+ R +
Sbjct: 124 GL-IPPETALPWFKTGVFPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWAN 176
Query: 184 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 177 PGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 236
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F Q VTG GP++NL HL+DP NN++T +
Sbjct: 237 LGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 61/252 (24%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 95
PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 96 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
+++ ELIH RWAML G + E
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG----- 156
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W G + L++G++ Y G+ +P ++ ++ E++++G E+ R LD E +L
Sbjct: 157 ---VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRL 210
Query: 191 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLS
Sbjct: 211 YPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLS 270
Query: 250 DPFANNLLTVIS 261
DP ++ +S
Sbjct: 271 DPLHTTIIDTLS 282
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 61/252 (24%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 95
PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 96 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
+++ ELIH RWAML G + E
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG----- 156
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W G + L++G++ Y G+ +P ++ ++ E++++G E+ R LD E +L
Sbjct: 157 ---VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRL 210
Query: 191 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLS
Sbjct: 211 YPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLS 270
Query: 250 DPFANNLLTVIS 261
DP ++ +S
Sbjct: 271 DPLHTTIIDTLS 282
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 116/239 (48%), Gaps = 38/239 (15%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S + SPS + S+ + PDR ++ P S P +L G +PGD+G+DP GL P
Sbjct: 42 SSTASPSRVRSTSTVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF- 153
Query: 155 KNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFD 197
I E+V +G AE R N L D +PGG FD
Sbjct: 154 -----------IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 202
Query: 198 PLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 254
PLG + P + L+ KEIKNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 203 PLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 111/229 (48%), Gaps = 37/229 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 49 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 103
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 104 LGAAGIFIPELLTKIGILNTPS--WYTAGEQTYFADTTTLF------------IVELILI 149
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 150 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTK 209
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
EIKNGRLAM A++G + QA TG GP++NL HL+DP + + N
Sbjct: 210 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R I+ P S PE+L G +PGD+G+DP GLS PD EL+H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLG 103
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAG-------EQEYFTDKTTLFVV-----ELILIGW 149
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 108/225 (48%), Gaps = 37/225 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 117
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G +T F + E+VL+G
Sbjct: 118 AAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGW 163
Query: 175 AEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
KNGRLAM A++G + Q TG GP++NL HL+DP + S
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 140/275 (50%), Gaps = 44/275 (16%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDR 68
QL + L+ P S R+ S + P+ + DR+++ D+
Sbjct: 26 QLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQG--------DRQLWFAS---DQ 74
Query: 69 SEIPEYLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEA 123
S YL G +PGDYG+DP GL + P F + + Y E+I+ R+AMLGA G I PE
Sbjct: 75 SL--SYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEI 132
Query: 124 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 182
K G A+ WF+TG + G T NY+ P L + E+ L+G AE+ R+ +
Sbjct: 133 LGKLGLIPQETALPWFQTGVIPPAG-TYNYWAD--PFTLF---VLEMALMGFAEHRRLQD 186
Query: 183 G-----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 223
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM
Sbjct: 187 YRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAM 246
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
A+LG+F+Q VTG GP +NL HL+DP NN LT
Sbjct: 247 LAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLT 281
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 122/234 (52%), Gaps = 33/234 (14%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P+ SSPS V + +LP GL P YL G +PGD G+DP GL++ P++ +
Sbjct: 38 PMASSSPSFKVEAKKGEWLP-GLPS----PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQ 92
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
EL++ RWAMLG AG ++PE F K G P+ W+ D YF + + ++
Sbjct: 93 AELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ--WY-------DAGKAEYFASSSTLFVI 143
Query: 163 FAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFA 209
++ V + + I N G +D + +PGG F+PL A +
Sbjct: 144 EFILFHYVEI--RRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEA-- 199
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
K KE+ NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ SGN
Sbjct: 200 --KEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHISDPWHNTIVQTFSGN 251
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 38/228 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
V+ +R +LP GL + P YL G++ GDYG+DP GL + P+ Y EL+H+R+AM
Sbjct: 42 VAVERATWLP-GL----DPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAM 96
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LG AG + + G P VW++ GA+ D + ++ + +L+
Sbjct: 97 LGVAGILFTDLLRTTGIRNLP--VWYEAGAVKFDFASTKTL-----------IVVQFLLM 143
Query: 173 GGAE-------------------YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLK 212
G AE ++ I L+ + +PGGP +PLGLAKD K
Sbjct: 144 GFAETKRYVDYVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWK 203
Query: 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+KEIKNGRLAM AMLGFF+QA VT GP++NL +HLS+P+ ++ +
Sbjct: 204 LKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 130/243 (53%), Gaps = 40/243 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----K 99
+++P DR+++ + YL G +PGDYG+DP GLS P+
Sbjct: 42 AEATPPAKQGADRQLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPS 95
Query: 100 YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKN 156
+ AY E+I+ R+AMLGA G I PE K G PE WFKTG + G T +Y+
Sbjct: 96 WLAYGEIINGRYAMLGAVGAIAPEILGKAGL-IPPETALPWFKTGVIPPAG-TYDYWAD- 152
Query: 157 IPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FD 197
P L + E+ L+G AE+ R + L E + ++PGGP F+
Sbjct: 153 -PYTLF---VFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGGPLFN 208
Query: 198 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HLSDP NN+L
Sbjct: 209 PLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNNIL 268
Query: 258 TVI 260
T +
Sbjct: 269 TSL 271
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 113/227 (49%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G IIPE + G F D + YF + + +A++VL+G
Sbjct: 118 VTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGW 163
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R + +D+E K +PGG FD + + P+ +L+ KEI
Sbjct: 164 AEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEI 223
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 224 KNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 61/253 (24%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 48 TPDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLA 102
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 103 GDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG---- 158
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L++G++ Y G+ +P ++ + E V++G E+ R LD E +
Sbjct: 159 ----VTWQDAGKVELVEGSS--YLGQPLPFSITALIWIEAVIIGYIEFQRNAE-LDPEKR 211
Query: 190 LHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HL
Sbjct: 212 LYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHL 271
Query: 249 SDPFANNLLTVIS 261
SDP ++ +S
Sbjct: 272 SDPLHTTIIDNLS 284
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 113/227 (49%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G IIPE + G F D + YF + + +A++VL+G
Sbjct: 118 VTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGW 163
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R + +D+E K +PGG FD + + P+ +L+ KEI
Sbjct: 164 AEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEI 223
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 224 KNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 35/215 (16%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K
Sbjct: 66 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGK 124
Query: 127 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 183
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 125 LGL-IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWA 177
Query: 184 ----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
L E D +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 178 KPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLA 237
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+LGFF+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 ILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+E P +L G++P DYG+DP L +KPD+ ++Y+ EL+HARWAM+G AG + G
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAV--------G 89
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
+ W D T Y G L + VLV AE R E
Sbjct: 90 VEIAGQGDWASAQPTTWDA-TAKYLGNETHAPLFAVIGVNGVLVAFAESQR--QAATGEA 146
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV--TGEGPVENLAK 246
+L+PGG FDP GL+K D F LK KE+ NGR+AM A G Q +G GPV+ LA
Sbjct: 147 RLYPGGSFDPAGLSKGKD-FETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLAN 205
Query: 247 HLSDPFANNLLT 258
HL+DP+ N+ T
Sbjct: 206 HLADPWHVNVCT 217
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 35/215 (16%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K
Sbjct: 66 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGK 124
Query: 127 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 183
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 125 LGL-IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWA 177
Query: 184 ----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
L E D +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 178 KPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLA 237
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+LGFF+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 ILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 186 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 119/211 (56%), Gaps = 31/211 (14%)
Query: 73 EYLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GL + P F + + AY E+I+ R+AMLGA G I PE K
Sbjct: 79 SYLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKL 138
Query: 128 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 183
G A+ WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 139 GLIPQETALPWFRTGVIPPAG-TYDYWAD--PFTLF---VLEMALMGFAEHRRLQDYRYP 192
Query: 184 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 227
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A++
Sbjct: 193 GSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIV 252
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
G+F+Q VTG GP +NL HL+DP NNLLT
Sbjct: 253 GYFIQGLVTGVGPFQNLLDHLADPVNNNLLT 283
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 108 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 154
Query: 186 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 155 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 214
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 215 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 116/222 (52%), Gaps = 39/222 (17%)
Query: 57 RRIFLPEGLLDRSEIPEYLTG----EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
R+ +LP SEIP++L + G++G+DP GL K + YQ EL+HAR AM
Sbjct: 27 RQSWLPG-----SEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAM 81
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
AG +IP K GA PE W+ G + ++ + P + AV ++ L
Sbjct: 82 TAVAGILIPGLLTKAGALNVPE--WYDAGKVAIESSF-------APFGALLAV--QLFLT 130
Query: 173 GGAEYYRITN----GLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKV 213
G E R + G E D +PGG FDPLGL+KD D+ A K+
Sbjct: 131 GFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWKL 190
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KEIKNGRLAM A LGF Q + TG+GP++NLA HL+DP+ N
Sbjct: 191 KEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVN 232
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R ++ P S P +L G +PGD+G+DP GL P+ E++H RWAMLG
Sbjct: 64 PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLG 118
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G L YF + +V E++ +G
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAG-------ELEYFTDKTTLFIV-----EMIFIGW 164
Query: 175 AEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG PD+ L+ KEI
Sbjct: 165 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEI 224
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 225 KNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 259
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 128/264 (48%), Gaps = 65/264 (24%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD--------- 95
++SSPS DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 46 SRSSPS----TDRPLWFPG-----AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSL 96
Query: 96 ----------------------------------DFSKYQAYELIHARWAMLGAAGFIIP 121
+++ ELIH RWAML G +
Sbjct: 97 DQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTV 156
Query: 122 EAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
E W G + L++G+T Y G+ +P ++ + E++++G E+ R
Sbjct: 157 EWLTG--------VTWQDAGKVELVEGST--YLGQPLPFSITTLIWIEVLVIGYIEFQRN 206
Query: 181 TNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+G
Sbjct: 207 AE-LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265
Query: 240 PVENLAKHLSDPFANNLLTVISGN 263
P+ N A HLSDP ++ S +
Sbjct: 266 PLNNWATHLSDPLHTTIIDTFSSS 289
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 108/217 (49%), Gaps = 37/217 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 51 ADPNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 105
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 106 LGAAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILI 151
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R +N L D +PGG FDPLG P++ L+ K
Sbjct: 152 GWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTK 211
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 212 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 248
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 108/205 (52%), Gaps = 13/205 (6%)
Query: 53 VSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
VS R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWA
Sbjct: 26 VSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWA 85
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLG AG + E +G W+ ++G +FG +P +L + E V
Sbjct: 86 MLGVAGSLAVELLG-YGN-------WYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVA 137
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ AE + PGG FDPLG AKD + LK+KEIKNGRLAM A LGF
Sbjct: 138 MAAAE----GQRRRCRRRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVA 193
Query: 232 QAYVTGEGPVENLAKHLSDPFANNL 256
Q TG+ P+ L +HL++P+A L
Sbjct: 194 QHAATGKAPLAALGEHLANPWAPTL 218
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 128/264 (48%), Gaps = 65/264 (24%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD--------- 95
++SSPS DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 104 SRSSPS----TDRPLWFPG-----AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSL 154
Query: 96 ----------------------------------DFSKYQAYELIHARWAMLGAAGFIIP 121
+++ ELIH RWAML G +
Sbjct: 155 DQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTV 214
Query: 122 EAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
E W G + L++G+T Y G+ +P ++ + E++++G E+ R
Sbjct: 215 EWLTG--------VTWQDAGKVELVEGST--YLGQPLPFSITTLIWIEVLVIGYIEFQRN 264
Query: 181 TNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+G
Sbjct: 265 AE-LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 323
Query: 240 PVENLAKHLSDPFANNLLTVISGN 263
P+ N A HLSDP ++ S +
Sbjct: 324 PLNNWATHLSDPLHTTIIDTFSSS 347
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 90 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 144
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AG +IPE G F D YF P L I ++VL+G
Sbjct: 145 VAGILIPEWLESLG---------FIENYNWFDAGAREYFAD--PTTL---FIVQLVLMGW 190
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
E R + +D+E L +PGG FDPL + P+ +L+ KEI
Sbjct: 191 VEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKEI 250
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 251 KNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +PGD+G+DP GL + P Y EL+H R+AM G AG + + G +
Sbjct: 69 PPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSD 128
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 183
P VWF+ GA + NT F +++L+G AE R +
Sbjct: 129 LP--VWFEAGAAKFEFANTTALF------------FVQLLLMGFAETKRYMDFKNPGSQA 174
Query: 184 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +
Sbjct: 175 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMV 234
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
QA VT GP++NL HLSDPF N++ S +
Sbjct: 235 QASVTHAGPIDNLLTHLSDPFNKNIIHAFSSS 266
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 114/207 (55%), Gaps = 23/207 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSL----------SPSPSPPLTKSSPSGMVSPDRRIFLPE 63
T+ +SSP L+ K L PS+ + + S P++ SP PDR +L
Sbjct: 4 STMAVSSPSLAGQAIK--LAPSVQDTGRITMRKTTTKSKPVSSGSP--WYGPDRVKYLGP 59
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 60 ---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 116
Query: 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 180
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 117 LARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 175
Query: 181 TNG--LDLEDKLHPGGPFDPLGLAKDP 205
G ++ D L+PGG FDPLGLA DP
Sbjct: 176 AGGPLGEVTDPLYPGGSFDPLGLADDP 202
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 112/222 (50%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G ++PE + G + D T YF P L + + V G
Sbjct: 109 VFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTLFVVQMGLMGWVEG 157
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ I N +D+E K+ +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 158 RRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG 217
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
RLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 218 RLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 33/209 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P VW++ GA+ D ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFACTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 186 -------LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE--------------- 176
P VW++ GA+ D + ++ + +L+G AE
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 177 ----YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
++ I L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 108/217 (49%), Gaps = 37/217 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 46 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 100
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 101 LGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELILI 146
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTK 206
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 207 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 243
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 141/272 (51%), Gaps = 45/272 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPE 73
+ + S P+ S+ ++K + + + +PP+ + + +R ++ S+
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQGA-------NRPLWFAS-----SQSLS 64
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 183
G A+ ++ T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 124 GLIPAETALPXXQTGVIPPAGTYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPG 178
Query: 184 -------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 108/217 (49%), Gaps = 37/217 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 44 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 98
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F + E++L+
Sbjct: 99 LGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------VVELILI 144
Query: 173 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 145 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTK 204
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 205 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 241
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 134/250 (53%), Gaps = 47/250 (18%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
S +PP+ + + DR+++ + YL G +PGD+G+DP GLS P+
Sbjct: 42 SSTPPVKQGA-------DRQLWFAS-----KQSLTYLDGSLPGDFGFDPLGLSD-PEGTG 88
Query: 99 -----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTL 150
K+ AY E+I+ R+AMLGAAG I PE K G PE WF+TG + G T
Sbjct: 89 GFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGL-IPPETALPWFQTGVIPPAG-TY 146
Query: 151 NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHP 192
+Y+ P L + E+ L+G AE+ R + L LE D +P
Sbjct: 147 DYWAD--PYTLF---VFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYP 201
Query: 193 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
GGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP
Sbjct: 202 GGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 261
Query: 252 FANNLLTVIS 261
NN+LT +
Sbjct: 262 VNNNVLTSLK 271
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
+ DR ++LP + P +L G +PGDYGYDP GL+ PD + + E + RWAM
Sbjct: 36 AADRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMA 90
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 173
G AG + +A + A WF GA L PI L E V+ G
Sbjct: 91 GVAGILFTDALHI------GSAPWFSIGAEL-----------ESPIPLWGLATIEFVIFG 133
Query: 174 GAEYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
E R+ ++ L PFDPLG+ + VKE+KNGRLAMFA GF +Q
Sbjct: 134 FLEMKRLEGWKKTGQNGLLNWFPFDPLGMNSKE-----MMVKEVKNGRLAMFAWCGFMVQ 188
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVIS 261
A VT EGPV NL KH++DPF NN +T I+
Sbjct: 189 ALVTREGPVTNLEKHIADPFNNNFITSIA 217
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 123/268 (45%), Gaps = 46/268 (17%)
Query: 2 SAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFL 61
S+ + G + + LS L+ + P++ S S + + PDR ++
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRS---------VTVCAVADPDRPLWF 69
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
P S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IP
Sbjct: 70 PG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIP 124
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI- 180
E K G P W+ G L +T F I E++ +G AE R
Sbjct: 125 EFLTKIGILNTPS--WYDAGKLEYFTDTTTLF------------IIELIFIGWAEGRRWA 170
Query: 181 ---------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAM 223
N L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 171 DILKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAM 230
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDP 251
A++G + Q TG GP++NL HL+DP
Sbjct: 231 LAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLGA
Sbjct: 64 DRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGA 118
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG IPE K G P W+ G +T F I E++L+G A
Sbjct: 119 AGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF------------IIELILIGWA 164
Query: 176 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 217
E R +N L D +PGG FDPLG P++ L+ KEIK
Sbjct: 165 EGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 224
Query: 218 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
NGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 225 NGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 258
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 117/214 (54%), Gaps = 26/214 (12%)
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-----YQAY-ELIHARWAMLGAAG 117
G+ D+S YL G +PGDYG+DP GLS P+ + AY E+IH RWAMLG AG
Sbjct: 69 GVSDQSL--SYLDGTLPGDYGFDPLGLSD-PEGAGGFINPGWLAYAEVIHGRWAMLGVAG 125
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG-AE 176
PE F + VWFK G + G + +++ + V + V + E
Sbjct: 126 ATAPETMKGFIPDS-TAVVWFKNGIIPAQG-SYDFWAPPTALFWVMVCMMNFVEINRLTE 183
Query: 177 Y----YRITNGL-DLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
Y +R L LE + +PGG F+P+G+ K+ +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN--DMDAMKVKEIKNGRLAMM 241
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
A G +QA +TGEGPV+NL H++DPFA+NLLT
Sbjct: 242 AFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLT 275
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 106/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R ++ P S P +L G +PGD+G+DP GL P+ E++H RWAMLG
Sbjct: 65 PNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLG 119
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G L YF + I E++ +G
Sbjct: 120 AAGIFIPEFLTKIGILNTPS--WYTAGE-------LEYFTDKTTL-----FIVEMIFIGW 165
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG PD+ L+ KEI
Sbjct: 166 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEI 225
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 226 KNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 260
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 109/225 (48%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ + PDR ++ P S P +L G +PGD+G+DP GL+ P+ E
Sbjct: 53 SSTTVCAVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 108 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----------- 154
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
I E+ +G AE R N L D +PGG FDPLG P+
Sbjct: 155 -IVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 213
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 214 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 96/164 (58%), Gaps = 16/164 (9%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YLTGE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G I PE A
Sbjct: 47 DTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCITPELIGGDIA 106
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN---- 182
E VWFK GA + L+Y G ++ ++ + +++L+G AE +R
Sbjct: 107 ----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAVQVILMGQAEAFRAAGYVVP 162
Query: 183 ---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 223
G DL D L+PG FDPL PD FA LKVKEIKNGRLA
Sbjct: 163 GGFGEDL-DNLYPGDAFDPLAWLI-PDTFAELKVKEIKNGRLAC 204
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+HARWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLA 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G ++PE K G W+ GA YF P L + + V G
Sbjct: 109 VFGILVPELLEKIGYI--ENFSWYDAGA-------REYFVD--PTTLFVVQMGLMGWVEG 157
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ + N +D+E K+ +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 158 RRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG 217
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
RLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 218 RLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 107/200 (53%), Gaps = 20/200 (10%)
Query: 57 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 116
R +++P S P +LTG +P DYG+DP GL K+P + +++Q E+IH+RWAMLG A
Sbjct: 37 RAVWMPG-----STPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVA 91
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 176
G EA W + A + D T Y G P L V E+ ++ E
Sbjct: 92 GAAGQEAITGV--------TWIE--APVQDSQT--YLGAESPFPLPVVVAIEVFVMAFVE 139
Query: 177 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
R +N D +L+PGG FDP G +K D F LK KEI NGR+AM A G QA T
Sbjct: 140 QQR-SNEKDPAKRLYPGGAFDPAGFSKGAD-FETLKKKEIANGRVAMLAFAGLIGQAQAT 197
Query: 237 G-EGPVENLAKHLSDPFANN 255
EGP+ L +H++DP+ N
Sbjct: 198 NLEGPLSALGRHVADPWHVN 217
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 107/225 (47%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ PDR ++ P S P +L G +PGD+G+DP GLS P+ E
Sbjct: 52 STTTVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAE 106
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 107 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----------- 153
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
I E++ +G AE R N L D +PGG FDPLG P
Sbjct: 154 -IVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQ 212
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 213 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 129/263 (49%), Gaps = 63/263 (23%)
Query: 46 KSSPSGMVSP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 95
KS+P P DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 38 KSAPKRSAKPTSDRPLWYPG-----AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDS 92
Query: 96 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 120
+++ ELIH RWAML G +
Sbjct: 93 LDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT 152
Query: 121 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 179
E W G + L++G++ Y G+ +P ++ + E++++G E+ R
Sbjct: 153 VEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR 202
Query: 180 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+ LD E +L+PGG F DPLGLA+DP++ A L++ EIK+ RLAM A LGF +QA VTG+
Sbjct: 203 NSE-LDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGK 261
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP+ N A HLSDP ++ S
Sbjct: 262 GPLNNWATHLSDPLHTTIIDNFS 284
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 109/225 (48%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ + PDR ++ P S P +L G +PGD+G+DP GL+ P+ E
Sbjct: 64 SSTTVCAVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAE 118
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 119 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----------- 165
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
I E+ +G AE R N L D +PGG FDPLG P+
Sbjct: 166 -IVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 224
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 225 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 115/213 (53%), Gaps = 34/213 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD+G+DP GL + P++ Y EL+HAR+AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITN----- 182
P VW++ GA+ + +T F I +++L+G E Y TN
Sbjct: 126 LP--VWYEAGAVKFEFASTEALF------------IVQLILMGFVETKRYMDFTNPGSQA 171
Query: 183 ----GLDLEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE L +PGGP +PLGLA+D K+KEIKNGRLAM AMLG F+
Sbjct: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFV 231
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
QA VT GP+ENL +HLS+P+ ++ IS +
Sbjct: 232 QASVTHAGPIENLVEHLSNPWHKTIIQTISSTS 264
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 120/215 (55%), Gaps = 35/215 (16%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 127 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 183
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRLQDWA 176
Query: 184 ----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 177 KPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 236
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 ILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 14/187 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD +DP LS + + EL+H RWAML G +PE ++ GA
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 132 GPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGLDL 186
E +W+K G +L+G +NY G + I ++ + VL+GG EY R L
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 187 E--------DKLHP-GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
E D +P GGPFDP L+ D ++ L+V E+K+GRLAM AMLG F QA+VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 238 EGPVENL 244
EGPV N+
Sbjct: 405 EGPVANV 411
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 122/256 (47%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 48 VISDRPLWFP-----GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNL 102
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G I E
Sbjct: 103 AGDVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--- 159
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E+++VG E+ R LD E
Sbjct: 160 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAE-LDSEK 211
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A H
Sbjct: 212 RLYPGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATH 271
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 272 LSDPLHTTIIDTFSSS 287
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 107/225 (47%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ PDR ++ P S P +L G +PGD+G+DP GLS P+ E
Sbjct: 51 STTTVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAE 105
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 106 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----------- 152
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
I E++ +G AE R N L D +PGG FDPLG P
Sbjct: 153 -IVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQ 211
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 212 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 107/225 (47%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ PDR ++ P S P +L G +PGD+G+DP GLS P+ E
Sbjct: 51 STTTVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAE 105
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 106 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----------- 152
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
I E++ +G AE R N L D +PGG FDPLG P
Sbjct: 153 -IVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQ 211
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 212 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 123/228 (53%), Gaps = 39/228 (17%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
S +R I+LP GL P++L G + GD+G+DP L K P+ Y EL+H+R+AM
Sbjct: 40 SDERPIWLP-GL----SPPQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMA 94
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV 172
G AG ++ + G P VW++ GA + +T F + +++L+
Sbjct: 95 GIAGILVTDLLRTVGGRDLP--VWYEAGATEFEFADTRTLF------------VVQLILM 140
Query: 173 GGAEYYR----ITNG--------LDLEDKL------HPGGPF-DPLGLAKDPDQFALLKV 213
G AE R I+ G L ED L +PGGPF DP GL +D + LK
Sbjct: 141 GYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNARTLKE 200
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
KE+KNGRLAM A+LG F+QA+ T GP++NL H+SDP+ N ++ +S
Sbjct: 201 KELKNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 37/241 (15%)
Query: 42 PPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
P T+ +P + + R +LP GL + P YL G + GD+G+DP GL + P Y
Sbjct: 42 PSSTRCTPVVVHAQQRPTWLP-GL----DPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYV 96
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 161
EL+HAR+AM G AG + + G P VW++ GA+ + +
Sbjct: 97 QAELVHARFAMAGVAGILFTDLLRVTGIRKLP--VWYEAGAVKFEFASTRTL-------- 146
Query: 162 VFAVIAEIVLVGGAEYYRITNGLD------------LEDKL------HPGGPF-DPLGLA 202
++ +++L+G AE R + + LE L +PGGP +PLGLA
Sbjct: 147 ---IVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGLEPGYPGGPLLNPLGLA 203
Query: 203 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262
+D + + K+KEIKNGRLAM AM+G F+QA VT GP++NL +HLS+P+ ++ ++
Sbjct: 204 RDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTLAN 263
Query: 263 N 263
+
Sbjct: 264 S 264
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Query: 46 KSSPSGM-VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
KS+P + PDR +L + P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 41 KSAPESIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 162
+IH RWAMLGA G + PE K G G EAVWFK G+ + L+Y G + +
Sbjct: 98 VIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSI 156
Query: 163 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 208
A+ A ++VL+G E YR+ G E D+L+PGG FDPLGLA+DP+ F
Sbjct: 157 LAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 37/229 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+ PDR ++ P S P +L G +PGD+G+DP GL P+ + EL+H+RWAM
Sbjct: 55 LGPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAM 109
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
L AAG ++PE K+G F +D +YF P L ++++ L+
Sbjct: 110 LAAAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQMALM 155
Query: 173 GGAEYYRITNGLD----------------LEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R + L+ + D +PGG FD + P+ +L+ K
Sbjct: 156 GWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 215
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
EIKNGRLAM A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 216 EIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 116/223 (52%), Gaps = 23/223 (10%)
Query: 10 LQVHQTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGMVSPDRR 58
L + T+ LSSP L+ K L PS S + P T SS S P+R
Sbjct: 11 LSMASTMALSSPSLAGTAVK--LTPSSSVVSGDGRFTMRKTAGKPKTVSSGSPWYGPERV 68
Query: 59 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 118
+L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G
Sbjct: 69 KYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 125
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 175
+ PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 126 VFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAV 184
Query: 176 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQ-FALLKVKE 215
E YR+ G ++ D L+PGG FDPLGLA+ FA V E
Sbjct: 185 EGYRVAGGPLGEVVDPLYPGGSFDPLGLARRSKTPFASSNVNE 227
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 46/280 (16%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLP---SLSPSPSPPLTKSSPSGMVS-------PDRRIFL 61
V +L S + +PR P L P + S + +P ++ G VS PDR I+
Sbjct: 10 VACSLRPSGASIHAPRSPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPLGPDRPIWF 69
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
P S P +L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P
Sbjct: 70 PG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVP 124
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 181
+ ++G + G D + YF P L ++++ L+G AE R
Sbjct: 125 DLLARWG--------FIDAGFSWFDAGSREYFAD--PWTL---FVSQMALMGWAEGRRWA 171
Query: 182 NGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAM 223
+ L D+E + +PGG FD + P+ +L+ KEIKNGRLAM
Sbjct: 172 DYLRPGCVDIEPRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAM 231
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 232 LAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 106/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRL M A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 90/142 (63%), Gaps = 6/142 (4%)
Query: 119 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGA 175
+ PE G + G E VWFK GA + LNY G I N+V + +++L+G
Sbjct: 1 VTPELLAANGVSFG-EPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLV 59
Query: 176 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA
Sbjct: 60 EGYRMNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 119
Query: 234 YVTGEGPVENLAKHLSDPFANN 255
VTG+GP++NL HL++P NN
Sbjct: 120 IVTGKGPIQNLTDHLANPAENN 141
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILN 142
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 181
P W+ G L YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------ELEYFTDKTTLFVV-----EMIFLGWAEGRRWADILEPGSVNT 188
Query: 182 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 234 YVTGEGPVENLAKHLSDPFANNLLTVIS 261
TG GP++NL HL+DP + S
Sbjct: 249 EYTGTGPIDNLLAHLADPGHATIFAAFS 276
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
P+R I+ P S PE+L G +PGD+G+DP GLS P+ E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 119/215 (55%), Gaps = 35/215 (16%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 127 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 183
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRFQDWA 176
Query: 184 ----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 177 KPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 236
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 ILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 108/225 (48%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ + PDR ++ P S P +L G +PGD+G+DP GL P+ E
Sbjct: 53 SSTTVCAVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAE 107
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 108 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----------- 154
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
+ E+ +G AE R N L D +PGG FDPLG P+
Sbjct: 155 -VVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 213
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 214 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 46/280 (16%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLP---SLSPSPSPPLTKSSPSGMVS-------PDRRIFL 61
V +L S + +PR P L P + S + +P ++ G VS PDR I+
Sbjct: 10 VACSLRPSGASIHAPRSPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPLGPDRPIWF 69
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
P S P +L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P
Sbjct: 70 PG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVP 124
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 181
+ ++G + G D + YF P L ++++ L+G AE R
Sbjct: 125 DLLARWG--------FIDAGFSWFDAGSREYFAD--PWTL---FVSQMALMGWAEGRRWA 171
Query: 182 NGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAM 223
+ L D+E + +PGG FD + P+ +L+ KEIKNGRLAM
Sbjct: 172 DYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAM 231
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 232 LAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 101/194 (52%), Gaps = 13/194 (6%)
Query: 53 VSPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
VS R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWA
Sbjct: 26 VSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWA 85
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLG AG + E W+ ++G +FG +P +L + E V
Sbjct: 86 MLGVAGSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVA 137
Query: 172 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ AE R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF
Sbjct: 138 MAAAEGQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVA 193
Query: 232 QAYVTGEGPVENLA 245
Q TG+GP+ A
Sbjct: 194 QHAATGKGPIAAWA 207
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 65 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 119
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 120 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 165
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 166 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 225
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 226 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P + PE+L G + GDYG+DPFGL K +
Sbjct: 52 VTTDRPLWYPGAI-----SPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 106
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 107 AGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 163
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E+++VG E+ R LD E
Sbjct: 164 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAE-LDSEK 215
Query: 189 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG FDPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 216 RLYPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 275
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 276 LSDPLHTTIIDTFSSS 291
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 28/200 (14%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P+YL G + GDYG+DP GL P+ + Y+ EL +ARWAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 132 GPEAVWFKTGA----LLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE 187
PE W+ G DGN +N G I ++ V V + R + ++ +
Sbjct: 100 -PEQWWYSAGMPENLPSFDGNKVNMGG----ILAWEFLLMHFVEVRRWQDIRKKDSVNAD 154
Query: 188 -----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
+ +PGGPFDPLG +K F ++ KEIKNGRLAM A + F +QA T
Sbjct: 155 PFNPNLKVPNPEMGYPGGPFDPLGFSK--GNFKEVQTKEIKNGRLAMVAFVAFTIQAQAT 212
Query: 237 GEGPVENLAKHLSDPFANNL 256
G+GP+ NL HL+ PF+NN+
Sbjct: 213 GKGPLANLTDHLASPFSNNV 232
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 31/224 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 52 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLA 106
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AG +IPE + G F D +F P L +A + V G
Sbjct: 107 VAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTLFVVQLALMGWVEG 155
Query: 175 AEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ + N +D++ D +PGG FDP + P+ +L+ KEIKNG
Sbjct: 156 RRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNG 215
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
RLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 216 RLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 259
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 8/151 (5%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 168
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 169 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 61 VILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 119
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 120 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 108/225 (48%), Gaps = 37/225 (16%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 104
+ ++ + PDR ++ P S P +L G +PGD+G+DP GL P+ E
Sbjct: 64 SSTTVCAVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAE 118
Query: 105 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 164
L+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 119 LVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----------- 165
Query: 165 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 206
+ E+ +G AE R N L D +PGG FDPLG P+
Sbjct: 166 -VVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 224
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 225 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 116/209 (55%), Gaps = 31/209 (14%)
Query: 78 EVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 132
+PGDYG+DP GLS ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 14 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPA 73
Query: 133 PEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-------- 183
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 74 ETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGK 127
Query: 184 ---LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q
Sbjct: 128 QYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVIS 261
VTG GP +NL HL+DP NN+LT +
Sbjct: 188 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 216
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 61/257 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P ++ P++L G + GDYG+DPFGL K +
Sbjct: 48 VTSDRPLWFPG-----AKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 102
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 103 AGDVIGTRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 159
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 160 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEK 211
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 212 RLYPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 271
Query: 248 LSDPFANNLLTVISGNA 264
LSDP ++ S ++
Sbjct: 272 LSDPLHTTIIDTFSSSS 288
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 126/265 (47%), Gaps = 63/265 (23%)
Query: 46 KSSP--SGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 95
K+SP + V DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 39 KASPKKAKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDS 93
Query: 96 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 120
+++ ELIH RWAML G I
Sbjct: 94 LDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAIT 153
Query: 121 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 179
E W G + L+DG++ Y G+ +P ++ + E++++G E+ R
Sbjct: 154 VEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQR 203
Query: 180 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM LGF +QA TG+
Sbjct: 204 NAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP+ N A HLSDP ++ S +
Sbjct: 263 GPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 162
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 37/227 (16%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 62 PDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 116
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G +IPE + G F + + YF + + +A++VL+G
Sbjct: 117 VTGILIPECLERLG---------FIENFSWYEAGSREYFADSTTL-----FVAQMVLMGW 162
Query: 175 AEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R + +D+E K +PGG FD + + P+ +L+ KEI
Sbjct: 163 AEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEI 222
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
KNGRLAM A +GF QA T + P+ENL HL+DP N+ + + +
Sbjct: 223 KNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 269
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 78 EVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 132
+PGDYG+DP GLS K+ AY E+I+ R+AMLGA G I PE F K G
Sbjct: 5 RLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGI-IP 63
Query: 133 PEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 183
PE WFKTG + G T NY+ + + + + L+G AE+ R+ +
Sbjct: 64 PETALPWFKTGVIPPAG-TYNYWADSYTL-----FVFNMALMGFAEHRRLQDWYNPGSMG 117
Query: 184 ----LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+LG+F+
Sbjct: 118 KQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFI 177
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
Q VTG GP +NL HL+DP NN+LT +
Sbjct: 178 QGLVTGVGPFQNLLDHLADPVNNNVLTSLK 207
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 112/222 (50%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PG++G+DP GL P+ EL+HARWAMLG
Sbjct: 60 PDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLG 114
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
+G +IPE K G W+ G ++ YF P L +A + V G
Sbjct: 115 VSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTTLFIVQLALMGWVEG 163
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ I N +D+E KL +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 164 RRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG 223
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
RLAM A LGF QA G P++NL HL+DP N+ + +
Sbjct: 224 RLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFT 265
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 37/229 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+ PDR ++ P + P +L G +PGD+G+DP GL +P+ + EL+H+RWAM
Sbjct: 63 LGPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAM 117
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
L AG +IPE K+G E W+ G YF P L IA++ L+
Sbjct: 118 LAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL---FIAQMALM 163
Query: 173 GGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R + +D+E + +PGG FD + P+ +L+ K
Sbjct: 164 GWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 223
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
EIKNGRLAM A +GF+ QA TG+GPV+NL HL+DP N+ + + +
Sbjct: 224 EIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 61/254 (24%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 46 VISDRPLWFP-----GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV 100
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 101 AGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--- 157
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 158 -----VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEK 209
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA+DP++ A+L++ EIK+ RLAM A LGF +QA VTG+GP+ N A H
Sbjct: 210 RLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATH 269
Query: 248 LSDPFANNLLTVIS 261
LSDP ++ S
Sbjct: 270 LSDPLHTTIIDNFS 283
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 180
P W+ G +T F I E+V +G AE R
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRRWADILNPGCVNT 106
Query: 181 -----TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q
Sbjct: 107 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 166
Query: 234 YVTGEGPVENLAKHLSDP 251
TG GP++NL HL+DP
Sbjct: 167 IYTGTGPIDNLFAHLADP 184
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 111/222 (50%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 108
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G ++PE + G + D T YF P L + + V G
Sbjct: 109 VFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTLFVVQMGLMGWVEG 157
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ I N +D+E K+ +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 158 RRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG 217
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
LAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 218 GLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 108/212 (50%), Gaps = 31/212 (14%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+HARWAMLG
Sbjct: 60 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLG 114
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
+G +IPE K G W+ G ++ YF P L +A + V G
Sbjct: 115 VSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTTLFIVQLALMGWVEG 163
Query: 175 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ I N +D+E KL +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 164 RRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG 223
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
RLAM A LGF QA G P++NL HL+DP
Sbjct: 224 RLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 31/222 (13%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 22 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLA 76
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AG +IPE + G F D +F P L +A + V G
Sbjct: 77 VAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTLFVVQLALMGWVEG 125
Query: 175 AEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 219
+ + N +D++ D +PGG FDP + P+ +L+ KEIKNG
Sbjct: 126 RRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNG 185
Query: 220 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
RLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 186 RLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFT 227
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 134/253 (52%), Gaps = 35/253 (13%)
Query: 35 SLSPSPSPPLTKSSPSGMV---SPDRRIFLPEGLLDRSEIP-EYLTGEVPGDYGYDPFGL 90
+L S +P T ++ S +V S D+ + L+ SE YL G +PGDYG+DP GL
Sbjct: 28 ALRVSFAPIGTSNARSSIVVRASSDKPVKANRQLIFASEQSLSYLDGSLPGDYGFDPLGL 87
Query: 91 SKKPD-----DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALL 144
S D + + E+I+ R+AMLGAAG I PE F K G A+ WF+TG +
Sbjct: 88 SDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIP 147
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE------ 187
G +Y+ P L + E+ L+G AE+ R + L E
Sbjct: 148 PLGQ-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKVLGGS 201
Query: 188 -DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
D +PGGP F+ LG +D LKVKE+KNGRLAM A+LG+F+QA TG GP +NL
Sbjct: 202 GDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQAIFTGVGPFQNLL 261
Query: 246 KHLSDPFANNLLT 258
HLSDP NN+LT
Sbjct: 262 DHLSDPANNNVLT 274
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 37/229 (16%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+ PDR ++ P S P +L G +PGD+G+DP GL P+ + EL+H+RWAM
Sbjct: 55 LGPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAM 109
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
L AG ++PE K+G F +D +YF P L ++++ L+
Sbjct: 110 LAVAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQMALM 155
Query: 173 GGAEYYRITNGLD----------------LEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R + L+ + D +PGG FD + P+ +L+ K
Sbjct: 156 GWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 215
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
EIKNGRLAM A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 216 EIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 46/226 (20%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR+++ P G++ PEYL GE+ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 170
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 74 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 115
Query: 171 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 214
L+ E R + G ED + +PGG FDP G +K F L+ K
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--GDFKELQTK 173
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 174 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 219
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 102/201 (50%), Gaps = 32/201 (15%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
S PE+L G +PGD+G+DP GL +P+ + E++H RWAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT------- 181
P W+ G YF + +V E++ +G AE R
Sbjct: 128 ILNTPS--WYTAG-------EQTYFADQTTLFIV-----ELLFMGWAEGRRWADILKPGS 173
Query: 182 ---------NGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
N L D +PGG FDPLG A + L+ KEIKNGRLAM A++G +
Sbjct: 174 VNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAW 233
Query: 231 LQAYVTGEGPVENLAKHLSDP 251
QA TG GP++NL HL+DP
Sbjct: 234 FQAVYTGTGPIDNLFAHLADP 254
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G + +T F I E+ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------------IVELFFIGW 162
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 127/263 (48%), Gaps = 63/263 (23%)
Query: 46 KSSPSGMVSP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 95
K++P P DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 39 KAAPKKFSKPSADRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDS 93
Query: 96 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 120
+++ ELIH RWAML G +
Sbjct: 94 LDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALS 153
Query: 121 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 179
E W G + L++G++ Y G+ +P ++ + E++L+G E+ R
Sbjct: 154 VEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSISTLIWIEVLLIGYIEFQR 203
Query: 180 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM LGF +QA VTG+
Sbjct: 204 NAE-LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGK 262
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP+ N A HLSDP ++ ++
Sbjct: 263 GPLNNWATHLSDPLHTTIIDTLT 285
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 51 VTTDRPVWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 105
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 106 AGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 162
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 163 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEK 214
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 215 RLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 274
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 275 LSDPLHTTIIDTFSSS 290
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 97/163 (59%), Gaps = 18/163 (11%)
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 164
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 58
Query: 165 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 215
I + +L+ G EY R LE D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 59 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 118
Query: 216 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 119 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 39 SPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 98
S +P +++ P+ VS + +LP GL P+YL G +PGD G+DP GL++ P++
Sbjct: 34 SRNPSASRAVPAFRVSAKKGEWLP-GLAS----PDYLNGSLPGDNGFDPLGLAEDPENLK 88
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 158
+ EL + RWAMLG AG ++PE F K G P+ W+ D YF +
Sbjct: 89 WFVQAELQNGRWAMLGVAGMLLPEVFTKIGIINAPQ--WY-------DAGKQEYFASSST 139
Query: 159 INLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDP 205
+ ++ ++ V + + I N G +D + +PGG F+PL A
Sbjct: 140 LFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKSYRLPPNEVGYPGGIFNPLNFAPSL 197
Query: 206 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
+ K KEI NGRLAM A LGF +Q +TG+GP +NL +HLSDP+ N ++ +S
Sbjct: 198 EA----KEKEIANGRLAMLAFLGFLIQHNLTGKGPFDNLLQHLSDPWHNTIIQTLS 249
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
AAG IPE K G P W+ G + +T F I E+ +G
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------------IVELFFIGW 162
Query: 175 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 216
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 222
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD+G+DP GL + P+ Y EL+H+R+AM G AG + + G +
Sbjct: 74 PPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSN 133
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV--------GGAEYYRITN 182
P VW++ GA NT F I L+ + + G A ++ +
Sbjct: 134 LP--VWYEAGATKFQFANTTTLF---IVQMLLMGFVETKRYMDFKNPGSQGEASFFGLEA 188
Query: 183 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
L+ + +PGGP +PLG+AKD K+KEIKNGRLAM A+LG F+QA VT GP+
Sbjct: 189 ALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVGPL 248
Query: 242 ENLAKHLSDPFANNLLTVISGN 263
ENL +HLSDP+ ++ ++S +
Sbjct: 249 ENLVEHLSDPWHTTIIQILSAS 270
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNECGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +H+SDP+ N ++ GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTFGGN 252
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 112/208 (53%), Gaps = 25/208 (12%)
Query: 57 RRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
RR FLP+ LL + +P YLTGE+PGD G+DP + + D +K + ELIH RWAM
Sbjct: 1320 RRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQ-RDLTKLRERELIHGRWAM 1378
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-----LDGNTLNYFGKNIP--------I 159
L A G + PE K G P + W+ T L G L Y G+ IP I
Sbjct: 1379 LAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFGLFWLPII 1438
Query: 160 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFAL--LKVKEI 216
+L +AE++ G E R GL D+++PGG FDPLG+ +D D+ L LK EI
Sbjct: 1439 HLPVFFVAEMLRTGKYEVERF-RGL---DRMYPGGSLFDPLGIGRDIDETELKVLKTIEI 1494
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENL 244
+ RLAM A GF ++A + G GP++ L
Sbjct: 1495 NHCRLAMTASFGFIVEAALWGAGPLDWL 1522
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 109/210 (51%), Gaps = 41/210 (19%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P+YL GE+ GDYG+DP GL P Y+ EL+HARWAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVK------ 95
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN---- 182
P+ +++ G +N+P +N+ + E +L+ E R +
Sbjct: 96 -PDVYFYEAG-----------LPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNF 143
Query: 183 GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
G ED + +PGG FDPLG +K L+ KEIKNGRLAM A +GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSK--GNLKELQTKEIKNGRLAMVAYMGFV 201
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 202 LQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 106/223 (47%), Gaps = 38/223 (17%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 64 DRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 118
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG IPEA K G P D TL + EI+L A
Sbjct: 119 AGIFIPEALTKAGILNTPSWTVAGDQQYFTDATTL--------------FVIEIILFAWA 164
Query: 176 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAKDPDQFAL--LKVKEI 216
E R N L D +PGG FDPLG + D L L+ +EI
Sbjct: 165 EGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREI 224
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
KNGRLAM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 225 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 267
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 32/209 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG AG + + G
Sbjct: 70 PPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGIRK 129
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P VW++ GA+ + + ++ +++ +G AE R + +
Sbjct: 130 LP--VWYEAGAVKYEFASTRTL-----------LVVQLLWMGYAETRRYMDYVSPGSQNK 176
Query: 186 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
+E L +PGGP +P GLAKD K+KEIKNGRLAM AMLG F+Q
Sbjct: 177 EGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQ 236
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVIS 261
A VT GP++NL +HLSDP+ ++ +S
Sbjct: 237 AAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 32/212 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 185
P VWF+ GA+ K N +I +++L+G AE R + +
Sbjct: 74 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAK 120
Query: 186 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
LE +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 121 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 180
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 181 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASSG 212
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 32/208 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 133
+L G +PGD+G+DPFGL PD + ELIH+RWAML G IIPE + G
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG----- 132
Query: 134 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-----GLDLE- 187
F D + YF + + +A++VL+G AE R + +D+E
Sbjct: 133 ----FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGWAEGRRWADLIKPGSVDIEP 183
Query: 188 ----------DKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D +PGG FD + + P+ +L+ KEIKNGRLAM A LGF QA
Sbjct: 184 KYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATY 243
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISGN 263
T + P+ENL HL+DP N+ + + +
Sbjct: 244 TSQDPIENLMAHLADPGHCNVFSAFTSH 271
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 56/241 (23%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 95
++ PEYL G + GDYG+DPFGL K +
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 96 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 144
+++ ELIH RWAML G + E W G + L
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVEL 172
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 203
++G++ Y G+ +P ++ + E +++G E+ R LD E +L+PGG FDPLGLA
Sbjct: 173 VEGSS--YLGQPLPFSITTLIWIEALVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAS 229
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
DP++ A L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSDP ++ S +
Sbjct: 230 DPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Query: 264 A 264
+
Sbjct: 290 S 290
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 51 VTTDRPLWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 105
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 106 AGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 162
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 163 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEK 214
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 215 RLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 274
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 275 LSDPLHTTIIDTFSSS 290
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +P DYG+DP GL K+PD+ +++Q ELIHARWAMLG +G
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG------------AA 93
Query: 132 GPEAVWFKTGALLLDG---NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
G E + TG ++ + Y G IP L E+ ++ E R + D
Sbjct: 94 GAEII---TGINWVEAPVQSQQTYLGNTIPFPLPAIAAIEVFVMAYVESKRGSE-TDRSK 149
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG-EGPVENLAKH 247
+++PGG FDP G +K D F LK KE+ NGR+AM A G +A EGPV LA+H
Sbjct: 150 RMYPGGAFDPAGFSKGAD-FEKLKRKELANGRVAMLAFAGIIGEAQANNLEGPVAALARH 208
Query: 248 LSDPFANNLLTVIS 261
L+DP+ N T ++
Sbjct: 209 LADPWHVNAATNVA 222
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 32/211 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 182
P VWF+ GA+ K N +I +++L+G AE R +
Sbjct: 127 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAK 173
Query: 183 -----GLDLE----DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
GL+ + +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 174 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 233
Query: 233 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 234 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASS 264
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 182
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 183 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPQHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 56/241 (23%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 95
++ PEYL G + GDYG+DPFGL K +
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 96 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 144
+++ ELIH RWAML G + E W G + L
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVEL 172
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 203
++G++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLGLA
Sbjct: 173 VEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAS 229
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 230 DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Query: 264 A 264
+
Sbjct: 290 S 290
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 56/241 (23%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 95
++ PEYL G + GDYG+DPFGL K +
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 96 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 144
+++ ELIH RWAML G + E W G + L
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVEL 172
Query: 145 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 203
++G++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLGLA
Sbjct: 173 VEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAS 229
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 230 DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Query: 264 A 264
+
Sbjct: 290 S 290
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +H+SDP+ N ++ + G
Sbjct: 228 GPFDNLLQHISDPWHNTIIQTLRG 251
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 105/223 (47%), Gaps = 37/223 (16%)
Query: 47 SSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
++ + PDR ++ P S P +L G +PGD+G+DP GL P+ EL+
Sbjct: 52 TTVCAVAEPDRPLWFPG-----STPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELV 106
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
H RWAMLGAAG IPE K G P W+ G L +T F I
Sbjct: 107 HCRWAMLGAAGIFIPEFLTKIGVLNTPS--WYSAGELEYFTDTTTLF------------I 152
Query: 167 AEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQF 208
E+ +G AE R N L D +PGG FDPLG P +
Sbjct: 153 VELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKI 212
Query: 209 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
L+ KEIKNGRLAM A++G + Q T GP++NL HL+DP
Sbjct: 213 KDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADP 255
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 125/272 (45%), Gaps = 71/272 (26%)
Query: 34 PSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK- 92
P+ S +PP T DR ++ P ++ PEYL G + GDYG+DPFGL K
Sbjct: 41 PAKKASRAPPTT----------DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKP 85
Query: 93 ------KPDDF------------------------------------SKYQAYELIHARW 110
PD +++ ELIH RW
Sbjct: 86 AEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRW 145
Query: 111 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEI 169
AML G + E W G + L+DG++ Y G+ +P + + E+
Sbjct: 146 AMLATLGALTVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEV 195
Query: 170 VLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
+++G E+ R LD E +L+PGG FDPLGLA DP++ L++ EIK+ RLAM LG
Sbjct: 196 LVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLG 254
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
F +QA TG+GP+ N A HLSDP + +
Sbjct: 255 FAVQAAATGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 116/217 (53%), Gaps = 34/217 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 129 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 184 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
LG+ QA +TG+GP +NL +HL+DP NN+LT +G
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNFAGR 265
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 168
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 169 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 224
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +H+SDP+ N ++ + G
Sbjct: 225 GPFDNLLQHISDPWHNTIIQTLRG 248
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 111/224 (49%), Gaps = 35/224 (15%)
Query: 51 GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 110
G V+ R +LP S P +L G +P DYG+DP L P++ + EL+H RW
Sbjct: 36 GAVAAARPTWLPG-----SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRW 90
Query: 111 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 170
AMLG AG + PE K G P W G DG Y+ P+ V ++
Sbjct: 91 AMLGLAGMVGPELLTKIGMADLPN--WIDAGKW--DG----YWLGAGPLFFV-----QMA 137
Query: 171 LVGGAEYYRITN----GLDLEDKL-------------HPGGPFDPLGLAKDPDQFALLKV 213
++ AE R + G ED L +P G FDP+G AKDP + LK
Sbjct: 138 MMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKR 197
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
KEI NGRLAM A++G F QA TG GPV+NL HL+DP NN+
Sbjct: 198 KEIANGRLAMVAIVGCFAQAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 34/214 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G + GD+G+DP GL++ P Y EL+H R+AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 132 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 185
P VWF+ GA+ D NT F + ++VL+G E R + +
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLF------------LVQLVLMGFVETKRYMDFVSPGSQA 169
Query: 186 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
LE L +PGGP +PLGLAKD + K+KEIKNGRLAM AMLG F+
Sbjct: 170 KEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFV 229
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 265
QA VT GP++NL +HLS+P+ ++ ++ ++
Sbjct: 230 QASVTHVGPIDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 33/225 (14%)
Query: 54 SPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
S R+ + G L S+ P YL ++PG YG+DP L + P Y EL+H+R+AM
Sbjct: 26 SNGSRVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAM 84
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
AG +IPE FGA P VW++ G + + IP N + A+ EI
Sbjct: 85 AAVAGILIPEVLKAFGAVNLP--VWYEAGKYAQESSP-------IPFNTLIAL--EIFAF 133
Query: 173 GGAEYYRITN--------------GLD-----LEDKLHPGGPFDPLGLAKDPDQFALLKV 213
E R + GL+ + +PGG FDPLGL+K P + +K+
Sbjct: 134 NFVEIKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGPG-YEAMKL 192
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+EIKNGRLAM A +GF Q TG+GP+ENL HLS+P ANN T
Sbjct: 193 REIKNGRLAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTT 237
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 61/256 (23%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
S DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 51 STDRPLWYP-----GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEA 105
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 106 GIIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG---- 161
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +
Sbjct: 162 ----VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKR 214
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HL
Sbjct: 215 LYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHL 274
Query: 249 SDPFANNLLTVISGNA 264
SDP ++ S ++
Sbjct: 275 SDPLHTTIIDTFSSSS 290
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 124/269 (46%), Gaps = 61/269 (22%)
Query: 41 SPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----- 95
+ P K S DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 39 AKPAPKKVAKTSTSSDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQFE 93
Query: 96 --------------------------------------DFSKYQAYELIHARWAMLGAAG 117
+++ ELIH RWAML G
Sbjct: 94 LDSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLG 153
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 176
+ E W G + L+DG++ Y G+ +P ++ + E++++G E
Sbjct: 154 ALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIE 203
Query: 177 YYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
+ R LD E +L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA
Sbjct: 204 FQRNAE-LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA 262
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISGNA 264
TG+GP+ N A HLSDP + G++
Sbjct: 263 TGKGPLNNWATHLSDPLHTTIFDTFGGSS 291
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 107/205 (52%), Gaps = 31/205 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGAN 130
P++L G +PGDYG+DP GL + Y+ EL HARWAMLG G PE N F
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 131 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDL 186
P W + A L DG Y N +F V ++ ++ AE R + G
Sbjct: 112 AMPN--WAE--APLWDG----YMASP---NTLFVV--QMFMMNWAEVRRWQDMKNPGTMN 158
Query: 187 EDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
ED L +P G FDP+G+AKDP++ +LKVKEI NGRLAM A++G +Q
Sbjct: 159 EDPLTGANKGDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCIIQN 218
Query: 234 YVTGEGPVENLAKHLSDPFANNLLT 258
TG GP+ NL HL+DP N + T
Sbjct: 219 EATGVGPIANLKAHLADPAHNTIFT 243
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 36/229 (15%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+ PDR I+ P S P +L G +PGD+G+DP GL +P+ + EL+H RWAM
Sbjct: 22 LGPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAM 76
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
L AAG ++P+ ++G G D + YF P L ++++ L+
Sbjct: 77 LAAAGILVPDLLARWGF--------IDAGFSWFDAGSREYFAD--PWTL---FVSQMALM 123
Query: 173 GGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 214
G AE R + L D+E + +PGG FD + P+ +L+ K
Sbjct: 124 GWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTK 183
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
EIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 184 EIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 232
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 125 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 173
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 174 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFVVQHNVTGK 229
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP ENL +HLSDP+ N ++ +S
Sbjct: 230 GPFENLLQHLSDPWHNTIVQTLS 252
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 123/270 (45%), Gaps = 61/270 (22%)
Query: 40 PSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD---- 95
P + K +S DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 38 PKAAVPKKVAKTSISSDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQF 92
Query: 96 ---------------------------------------DFSKYQAYELIHARWAMLGAA 116
+++ ELIH RWAML
Sbjct: 93 ELDSLDQNLAKNEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATL 152
Query: 117 GFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
G + E W G + L+DG++ Y G+ +P + + E++++G
Sbjct: 153 GALTVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFTISTLIWIEVLVIGYI 202
Query: 176 EYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234
E+ R LD E +L+PGG FDPL LA DP++ L++ EIK+ RLAM A LGF +QA
Sbjct: 203 EFQRNAE-LDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAA 261
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVISGNA 264
TG+GP+ N A HLSDP + G++
Sbjct: 262 ATGKGPLNNWATHLSDPLHTTIFDTFGGSS 291
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 99/198 (50%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +P D+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 180
P W+ G L YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------ELEYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNT 188
Query: 181 -----TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 234 YVTGEGPVENLAKHLSDP 251
TG GP++NL HL+DP
Sbjct: 249 EYTGTGPIDNLLAHLADP 266
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P++ S S V + +LP GL P YL G +PGD G+DP GL++ P++ +
Sbjct: 38 PMSSSPASFKVEAKKGEWLP-GLPS----PAYLNGSLPGDNGFDPLGLAEDPENLKWFVQ 92
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
EL++ RWAMLG AG ++PE F K G P+ W+ D YF + + ++
Sbjct: 93 AELVNGRWAMLGVAGMLLPEVFTKIGIINVPK--WY-------DAGKEEYFASSSTLFVI 143
Query: 163 FAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFA 209
++ V + + I N G +D + +PGG F+PL A +
Sbjct: 144 EFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA-- 199
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
K KE+ NGRLAM A LGF +Q VTG+GP +NL +HLSDP+ N ++ SGN
Sbjct: 200 --KEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFSGN 251
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 89/135 (65%), Gaps = 10/135 (7%)
Query: 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 182
KFG EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG 63
Query: 183 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240
G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 64 GPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 123
Query: 241 VENLAKHLSDPFANN 255
+ENL HL+DP ANN
Sbjct: 124 IENLYDHLADPVANN 138
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 120/256 (46%), Gaps = 61/256 (23%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+ DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 48 TSDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDA 102
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 103 GDIIGTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG---- 158
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L+DG++ Y G+ +P ++ + E++L+G E+ R LD E +
Sbjct: 159 ----VTWQDAGKVELVDGSS--YLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE-LDSEKR 211
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HL
Sbjct: 212 LYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHL 271
Query: 249 SDPFANNLLTVISGNA 264
SDP + S ++
Sbjct: 272 SDPLHTTIFDTFSSSS 287
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 61/247 (24%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 95
DR ++ P + PE+L G + GDYG+DPFGL K +
Sbjct: 52 DRPLWFPGAV-----APEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGD 106
Query: 96 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 132
+++ ELIH RWAML G + E+
Sbjct: 107 VIGTRFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTG------ 160
Query: 133 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 191
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 161 --VTWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDPEKRLY 215
Query: 192 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 250
PGG F DPLGLA DP++ A+L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSD
Sbjct: 216 PGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPLNNWATHLSD 275
Query: 251 PFANNLL 257
P ++
Sbjct: 276 PLHTTII 282
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 60/248 (24%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 95
PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 46 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAG 100
Query: 96 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
+++ ELIH RWAML G + E
Sbjct: 101 DVIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI---- 156
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W G + L++G++ Y G+ +P ++ + E++++G ++ LD E +L
Sbjct: 157 ----TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIVEFQRNAELDPEKRL 210
Query: 191 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLS
Sbjct: 211 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 270
Query: 250 DPFANNLL 257
DP +
Sbjct: 271 DPLHTTIF 278
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 109/223 (48%), Gaps = 38/223 (17%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 1 DRPLWFPG-----SKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 175
AG IPEA K G P W G YF P L + E++L A
Sbjct: 56 AGIFIPEALTKAGILNTPS--WNVAG-------DQQYFAD--PTTL---FVIELILFAWA 101
Query: 176 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA--KDPDQFALLKVKEI 216
E R N L D +PGG FDPLG KD + L+ KEI
Sbjct: 102 EGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEI 161
Query: 217 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
KNGRLAM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 162 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 204
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 102/205 (49%), Gaps = 30/205 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---- 184
+ W G D YF P + +F V +++L AE R + +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQDFVKPGS 173
Query: 185 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
D + +PGG FDP G +K LK KEIKNGRLAM A GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 232 QAYVTGEGPVENLAKHLSDPFANNL 256
QAY TG P++NLA HL+DP+A +
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTV 256
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGK 228
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP ENL +HLSDP+ N ++ +
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTFN 251
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 61/256 (23%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+ DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 51 TTDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNA 105
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 106 GEIIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG---- 161
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +
Sbjct: 162 ----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKR 214
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HL
Sbjct: 215 LYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 274
Query: 249 SDPFANNLLTVISGNA 264
SDP + S ++
Sbjct: 275 SDPLHTTIFDTFSSSS 290
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 51 VTTDRPLWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 105
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 106 AGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 162
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 163 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEK 214
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPL LA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 215 RLYPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 274
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 275 LSDPLHTTIIDTFSSS 290
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 115/226 (50%), Gaps = 46/226 (20%)
Query: 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 115
DR+++ P G++ PEYL G++ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 116 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 170
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 86 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 127
Query: 171 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 214
L+ E R + G ED + +PGG FDP G +K L+ K
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--GNLKELQTK 185
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 186 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 181
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAG-------EQEYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 182 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 234 YVTGEGPVENLAKHLSDP 251
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 39/231 (16%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
S R+ +LP GL + P +L G + GD+G+DP GL + P Y EL+H R+AML
Sbjct: 47 SEHRQTWLP-GL----DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAML 101
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV 172
G +G ++ + G + P VW+ GA+ N F I +++L+
Sbjct: 102 GVSGVLLTDLLRVTGISELP--VWYNAGAVEYGFANKRTLF------------IVQLLLM 147
Query: 173 GGAEYYRITN--------------GLDLEDK----LHPGGP-FDPLGLAKDPDQFALLKV 213
G E R + GL+ K +PGGP +PLG+AKD K+
Sbjct: 148 GFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKL 207
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 264
KEIKNGRLAM AMLG F+QAYVT GP++NL +HLS+P+ ++ +S ++
Sbjct: 208 KEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 258
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 65 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124
LL + P+YL G + GDYG+DP GL P+ YQ EL++ARWAM+ AG EA
Sbjct: 49 LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEAL 108
Query: 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 184
G ++ W+ G +Y PIN AV+ +G E RIT L
Sbjct: 109 -------GIQSKWYMAG-------QEDY---GFPINAQLAVL--FPTMGFLETKRITGWL 149
Query: 185 DL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
+ ++ PFDPLG+ D D +K+KEIKNGR AM A +G +QA V EGP+
Sbjct: 150 ATGKSGINETFPFDPLGMGADSDS---MKLKEIKNGRAAMIAFVGICVQALVLREGPLAA 206
Query: 244 LAKHLSDPFANNLLTVI 260
L H+++PF NNL T +
Sbjct: 207 LQDHVANPFGNNLATNV 223
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 102/206 (49%), Gaps = 30/206 (14%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---- 184
+ W G D YF P + +F V +++L AE R + +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQDFVKPGS 173
Query: 185 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
D + +PGG FDP G +K LK KEIKNGRLAM A GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 232 QAYVTGEGPVENLAKHLSDPFANNLL 257
QAY TG P++NLA HL+DP+A +
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTVW 257
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 181
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAG-------EQEYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 182 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 234 YVTGEGPVENLAKHLSDP 251
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 136/285 (47%), Gaps = 38/285 (13%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDR 68
+ Q Q L +P S RR+ + P P ++ + + DR + D
Sbjct: 7 KTQALQGLTTKAP--KSLRRQVVVRAEGEQQPPAPAAEAKQTSVAKVDRSKDVLYVGSDA 64
Query: 69 SEIPEYLTGEVPGDYGYDPFGL-------SKKPDDFSK---YQAYELIHARWAMLGAAGF 118
+ + +YL G +PGDYG+DP GL + F Q E+IHARWAMLGAAG
Sbjct: 65 AAL-KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGC 123
Query: 119 IIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 177
I PE K G AV WF+TG + G +++ P L F E+V + AE
Sbjct: 124 IAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWAD--PFTLFFI---EVVAIQFAEL 178
Query: 178 YRITN-------------GLD-----LEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKN 218
R+ + GL+ ++ +PGGPF + K + LK+ EIKN
Sbjct: 179 KRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKN 238
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
GRLAM AM G+ QA +TG+GP +NL HL+DP NL+T + G
Sbjct: 239 GRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNLGGK 283
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +HLSDP+ N ++ +SG+
Sbjct: 228 GPFDNLLQHLSDPWHNTIVQTLSGS 252
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +H+SDP+ N ++ + GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTLGGN 252
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 34/212 (16%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 129 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 184 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 121 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 169
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 170 FKNYSLPPNECGYPGGIFNPLNFAATEEA----KEKELANGRLAMLAFLGFIVQHNVTGK 225
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +HLSDP+ N ++ +S N
Sbjct: 226 GPFDNLLQHLSDPWHNTIIQTLSSN 250
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ PD Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 61/257 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
+S DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 48 ISSDRPLWFPGAV-----APDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNE 102
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 103 PGVVIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--- 159
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 160 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEK 211
Query: 189 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A H
Sbjct: 212 RLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 271
Query: 248 LSDPFANNLLTVISGNA 264
LSDP + ++
Sbjct: 272 LSDPLHTTIFDTFGASS 288
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +PGDYG+DP L + D Y EL HARWAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 181
P W A +G YF + + V ++ ++ AE R
Sbjct: 106 LPN--WHD--APFYNG----YFASSTTLFTV-----QMFMMNWAEIRRWQDIKNPGSVSE 152
Query: 182 ------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
N L D +PGG F+P+ K D+ LK KEI NGRLAM A LG F+Q
Sbjct: 153 DPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDH 212
Query: 236 TGEGPVENLAKHLSDPFANNLL 257
TG GPVENL HLS+P NN+
Sbjct: 213 TGVGPVENLTSHLSNPGVNNVF 234
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 105/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G++PGD G+DP GL++ P++ Y EL++ RWAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
PE W+ D YF + + + E +L E R + G +
Sbjct: 116 APE--WY-------DAGKSTYFASSSTL-----FVVEFILFHYVEIRRWQDIKEPGCVNQ 161
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PG F+PL A + K KEI NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKEIANGRLAMLAYLGFSVQHAV 217
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP++NL +HLSDP+ N ++ SG
Sbjct: 218 TGKGPLDNLFQHLSDPWHNTIIQTFSG 244
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 135 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DK 189
AVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP 60
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA VTG+GP+ENL HL+
Sbjct: 61 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHLA 120
Query: 250 DPFANN 255
DP NN
Sbjct: 121 DPSTNN 126
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 122/270 (45%), Gaps = 63/270 (23%)
Query: 27 RRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLD----RSEIPEYLTGEVPGD 82
++ P +++P P+ KS P+ + ++ P G D +E P +L G +PGD
Sbjct: 14 KKAAPAKKTVTPVKKAPIKKSPPAKKPATQKKFTPPSGERDLWYPNAEAPAWLDGSMPGD 73
Query: 83 YGYDPFGLSK---------------------------------KPD-----------DFS 98
G+DPFGLSK KP D +
Sbjct: 74 RGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTDNKPTERTIVPFNEAFDIN 133
Query: 99 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI- 157
+++ EL+H+RWAMLG G I EA G W G + L+ Y G N+
Sbjct: 134 RFRECELLHSRWAMLGLVGVIFGEA--------GTGVAWQDAGKVELE--QTQYLGFNLW 183
Query: 158 --PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA-KDPDQFALLKVK 214
NL E++LVG E+YR LD E + +PGG FDPLG A K P++ LK
Sbjct: 184 GEGSNLAALTAIEVLLVGTLEFYRSAE-LDQEKRCYPGGAFDPLGFASKSPEETFRLKTA 242
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
E+K+GRLAM AM G QA GEG +E L
Sbjct: 243 ELKHGRLAMVAMFGVAQQALNNGEGALEAL 272
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 117/255 (45%), Gaps = 59/255 (23%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+ DR ++ P + PEYL G + GDYG+DP GL K +
Sbjct: 48 TSDRPLWFPGAV-----APEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVA 102
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 103 GDIIGTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG---- 158
Query: 131 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 190
W G + L+ N +Y G+ +P ++ + E++L+G E+ R LD E +L
Sbjct: 159 ----VTWQDAGKVELE-NGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE-LDPEKRL 212
Query: 191 HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
+PGG FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HLS
Sbjct: 213 YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLS 272
Query: 250 DPFANNLLTVISGNA 264
DP + S ++
Sbjct: 273 DPLHTTIFDTFSSSS 287
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
Query: 169 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
+VL+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 144 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 203
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 204 FGFFVQAIVTGKGPLENLNDHLADPVANN 232
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 30/199 (15%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +P DYG+DP L PD + + EL+H RWAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 179
P VWF+ G + D ++ +P + + V E + +G E R
Sbjct: 69 VP--VWFEAGKVANDNSS-------VPFSALLMV--EFLAMGFVETKRWYDIKSPGSQGD 117
Query: 180 -----ITNGLDLEDKLHPGGP-FDPLGLAKDPDQ-FALLKVKEIKNGRLAMFAMLGFFLQ 232
IT+ + +PGG FDP G +K ++ + L+VKEI NGRLAM AM+GF+ Q
Sbjct: 118 GSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQ 177
Query: 233 AYVTGEGPVENLAKHLSDP 251
TG+GPV+NL H++DP
Sbjct: 178 YAATGKGPVDNLFDHIADP 196
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 61/253 (24%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+ DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 48 TSDRPLWYPGAV-----APDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMA 102
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 103 GEIIGTRTEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG---- 158
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +
Sbjct: 159 ----VTWQDAGKVELVEGSS--YLGQPLPFSMTTLIWIEVLVIGFIEFQRNAE-LDPEKR 211
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HL
Sbjct: 212 LYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 271
Query: 249 SDPFANNLLTVIS 261
SDP ++ +
Sbjct: 272 SDPLHTTIIDTFT 284
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 34/212 (16%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 43 YLDGTLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 100
Query: 129 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 155
Query: 184 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 156 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 215
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 216 LGYGAQAVLTGKGPFQNLVEHLADPVNNNILT 247
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 98/198 (49%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G +P D+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 180
P W+ G YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------EQEYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNT 188
Query: 181 -----TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 234 YVTGEGPVENLAKHLSDP 251
TG GP++NL HL+DP
Sbjct: 249 EYTGTGPIDNLLAHLADP 266
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 168 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 168 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 33/234 (14%)
Query: 43 PLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 102
P T S+ S V + +LP GL P YL G +PGD G+DP L++ P++ +
Sbjct: 39 PSTSSTNSLKVEAKKGEWLP-GLAS----PAYLNGSLPGDNGFDPLALAEDPENLKWFVQ 93
Query: 103 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162
EL++ RWAMLG AG ++PE F + G P+ W+ D YF + + ++
Sbjct: 94 AELVNGRWAMLGVAGMLLPEVFTQIGIINVPK--WY-------DAGKQEYFASSSTLFVI 144
Query: 163 FAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFA 209
++ V + + I N G +D + +PGG F+PL A A
Sbjct: 145 EFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----A 198
Query: 210 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
K KE+ NGRLAM A LGF +Q VTG+GP +NL +HLSDP+ N ++ GN
Sbjct: 199 EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTFGGN 252
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P +W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 AP--LWY-------DAGKSTYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL +P A K KE+ NGRLAM A L F +Q +TG+
Sbjct: 165 FKNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLAFMVQHGITGK 220
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP ENL +HLSDP+ N ++ +SG
Sbjct: 221 GPFENLLQHLSDPWHNTIIQTLSG 244
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 61/256 (23%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 95
V+ DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 51 VTTDRPLWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNL 105
Query: 96 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+++ ELIH RWAML G + E
Sbjct: 106 AGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--- 162
Query: 130 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E
Sbjct: 163 -----VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEK 214
Query: 189 KLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247
+L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP A H
Sbjct: 215 RLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPRNYWATH 274
Query: 248 LSDPFANNLLTVISGN 263
LSDP ++ S +
Sbjct: 275 LSDPLHTTIIDTFSSS 290
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 104/216 (48%), Gaps = 39/216 (18%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGL------SKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 122
S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGAAG IPE
Sbjct: 71 SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIFIPE 130
Query: 123 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI-- 180
A K G P W G +YF + ++ E++L AE R
Sbjct: 131 ALTKMGILNTPS--WTVAG-------DADYFTDKTTLFVI-----ELILFAWAEGRRWAD 176
Query: 181 --------------TNGLDLEDKLHPGG-PFDPLGLAKDPDQFAL--LKVKEIKNGRLAM 223
N L D +PGG FDPLG + D L L+ +EIKNGRLAM
Sbjct: 177 IVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAM 236
Query: 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259
A+LG +QA T GP++NL HL DP N + +
Sbjct: 237 LAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 119/248 (47%), Gaps = 31/248 (12%)
Query: 32 LLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEG---LLDRSEIPEYLTGEVPGDYGYDPF 88
L P+ S S L S G+ RR + L + P YL G + GD G+DP
Sbjct: 13 LRPAASASSPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGFDPL 72
Query: 89 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 148
L++ P+D + EL++ RWAMLG AG +IPE K G PE W+ D
Sbjct: 73 ALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPE--WY-------DAG 123
Query: 149 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGP 195
YF + + ++ ++ V + + I N G +D + +PG
Sbjct: 124 KETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSV 181
Query: 196 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP ENL +HL+DP+ N
Sbjct: 182 FNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNT 237
Query: 256 LLTVISGN 263
++ ISG
Sbjct: 238 IIQTISGQ 245
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 114/238 (47%), Gaps = 59/238 (24%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDF------------------------------- 97
+E P +L G +PGD G+DP GLS P D+
Sbjct: 85 TERPAWLDGSLPGDRGFDPLGLSS-PQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPKTKI 143
Query: 98 --------------SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 143
+++ ELIH RWAMLGA G ++ EA W G +
Sbjct: 144 SDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEASTGVS--------WVDAGKV 195
Query: 144 LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAK 203
LDG Y G ++P ++ V E +LVGGAE YR L+ + +++PGG FDPLGLA
Sbjct: 196 ELDGA--QYLGFSLPFSISQLVWIEAILVGGAEIYR-NRELEPQARIYPGGYFDPLGLAT 252
Query: 204 DPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
D A LK E+K+GRLAM A LGF +QA TG+G + +LAK S FA L+ I
Sbjct: 253 GDDARAFKLKEAELKHGRLAMIAFLGFGVQALATGQGALGSLAKFASS-FAPELVEDI 309
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 31/229 (13%)
Query: 50 SGMVSPDRRIFLPEG---LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
+ SP RR E L P YL G +PGD G+DP GL++ P++ Y EL+
Sbjct: 31 TATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELV 90
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
+ RWAMLG AG +IPE K G P+ W+ D YF + + ++ ++
Sbjct: 91 NGRWAMLGVAGMLIPEVLTKAGLINAPQ--WY-------DAGKSEYFASSSTLFVIEFIL 141
Query: 167 AEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKV 213
V + + I N G +D + +PG F+PL A + K
Sbjct: 142 FHYVEI--RRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KE 195
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262
KE+ NGRLAM A L F +Q VTG+GP +NL +HLSDP+ N ++ +SG
Sbjct: 196 KELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 45 TKSSPSGMVSP---DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
TKSS S + P DR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 53 TKSSLSTVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFA 107
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 161
EL+H RWAML AG +IPE K+G E W+ G YF P L
Sbjct: 108 QAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL 156
Query: 162 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 206
+A + V G + N +D+E + +PGG FD + P+
Sbjct: 157 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPE 216
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
+L+ KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 217 PVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 273
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPPNEVGYPGGIFNPLNFAPTVEA----KEKELANGRLAMLAFLGFVIQHNVTGK 228
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP ENL +HLSDP+ N ++ +S
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTLS 251
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQG 250
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 45 TKSSPSGMVSP---DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
TKSS S + P DR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 50 TKSSLSTVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFA 104
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 161
EL+H RWAML AG +IPE K+G E W+ G YF P L
Sbjct: 105 QAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL 153
Query: 162 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 206
+A + V G + N +D+E + +PGG FD + P+
Sbjct: 154 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPE 213
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
+L+ KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 214 PVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 270
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 102/204 (50%), Gaps = 31/204 (15%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P++L GE+PGDYG+DP L K+P D Y EL H RWAMLG AG PE K G
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLD 185
+ P W + NY G +F V +++++ AE R + G
Sbjct: 101 SDLPN--WH---------DAPNYQGYFTDATTLFWV--QMLMMNWAEVRRWQDMRKPGSV 147
Query: 186 LED------KL------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
ED KL +PGG FDPLG AK LK KEI NGRLAM A G +Q
Sbjct: 148 NEDPAFSGNKLPSGIVGYPGGIFDPLGYAK--GDLNKLKAKEIANGRLAMVAFAGIMVQY 205
Query: 234 YVTGEGPVENLAKHLSDPFANNLL 257
TG GPV NL H+SDP NN+
Sbjct: 206 DHTGVGPVANLVAHMSDPAHNNVF 229
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 31/229 (13%)
Query: 50 SGMVSPDRRIFLPEG---LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 106
+ SP RR E L P YL G +PGD G+DP GL++ P++ Y EL+
Sbjct: 39 TATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELV 98
Query: 107 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 166
+ RWAMLG AG +IPE K G P+ W+ D YF + + ++ ++
Sbjct: 99 NGRWAMLGVAGMLIPEVLTKAGLINAPQ--WY-------DAGKSEYFASSSTLFVIEFIL 149
Query: 167 AEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKV 213
V + + I N G +D + +PG F+PL A + K
Sbjct: 150 FHYVEI--RRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KE 203
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262
KE+ NGRLAM A L F +Q VTG+GP +NL +HLSDP+ N ++ +SG
Sbjct: 204 KELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSG 252
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 168 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
+++L+G E YRI G ++ D L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPXAFAELKVKEIKNGRLAMFS 74
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 61/249 (24%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
+ DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 48 TTDRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLA 102
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 103 GEIIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG---- 158
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L+DG++ Y G+ +P + + E++++G E+ R LD E +
Sbjct: 159 ----VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPERR 211
Query: 190 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+G + N A HL
Sbjct: 212 LYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLNNWATHL 271
Query: 249 SDPFANNLL 257
SDP +
Sbjct: 272 SDPLHTTIF 280
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 105/192 (54%), Gaps = 35/192 (18%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P++LTGE PGD G+DP GLS P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT-----NGLDL 186
WF L G L G + VIA + EY+R NG D
Sbjct: 225 -----WFD-----LSGFNLTRLGL-----VALQVIAPL------EYWRGNRGFSWNGDDG 263
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D+ +PG FDPL L D K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++
Sbjct: 264 PDQSYPG--FDPLRLTDDE-----TKLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSE 316
Query: 247 HLSDPFANNLLT 258
HLS+P + N+LT
Sbjct: 317 HLSNPASVNILT 328
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 95/195 (48%), Gaps = 35/195 (17%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----DL 186
WF+ + D N FAV+A + +V EY+R G +
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 VDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 247 HLSDPFANNLLTVIS 261
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 45/264 (17%)
Query: 4 VLLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLP 62
LLG ++Q H ++ SPL + + + PL +++ S + P M +
Sbjct: 483 ALLGFEVQRH--VVGGSPLANLAEHLQQPLQRNIADS----IMHQWPVAMFASSGH---K 533
Query: 63 EGL-LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
+GL +E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+P
Sbjct: 534 DGLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVP 593
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 181
E K WF+ G +DG L + + + EY+R
Sbjct: 594 ELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQ 630
Query: 182 NGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
G + + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TG
Sbjct: 631 GGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATG 683
Query: 238 EGPVENLAKHLSDPFANNLLTVIS 261
E P+ NL+ HL++P N+ T ++
Sbjct: 684 ESPLANLSAHLANPIGANITTNLA 707
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 115/263 (43%), Gaps = 45/263 (17%)
Query: 4 VLLGLQLQVHQTLLLSSPL--LSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRR-IF 60
+LGL++Q H T SPL LS P + L+ S + +S D R ++
Sbjct: 295 AMLGLEVQSHITG--KSPLVNLSEHLSNPASVNILTGGGSVAMFAASGRKSQKSDERPLW 352
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
P L P +L GE GD G+DP GL+ PD F + + E+ H R AML G ++
Sbjct: 353 FPNTL-----APSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALV 407
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
P+ K +W++ +N I L I + +
Sbjct: 408 PDYLGK--------GIWYEA-------------AQNAGIGLKEVAI----FTAAYGVFEV 442
Query: 181 TNGLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +Q +V G
Sbjct: 443 ARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVG 495
Query: 238 EGPVENLAKHLSDPFANNLLTVI 260
P+ NLA+HL P N+ I
Sbjct: 496 GSPLANLAEHLQQPLQRNIADSI 518
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 49/211 (23%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRI--FLP 62
+ GL++Q H T K P+ +L S PLT + + + P ++ F
Sbjct: 857 MFGLEVQSHVT------------GKSPIT-NLIDHLSHPLTANIGTNLSQPWPQVAMFAS 903
Query: 63 EGLLD-----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
G D +E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G
Sbjct: 904 SGHKDGLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVG 963
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY 177
I+PE K WF+ G +DG L + + + EY
Sbjct: 964 CIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEY 1000
Query: 178 YRITNGLDLE----DKLHPGGPFDPLGLAKD 204
+R G + + D+ +PG FDPL L D
Sbjct: 1001 WRGQGGFNWQKGELDRSYPG--FDPLNLTTD 1029
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 196 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
FDPL LA DPD +A ++V E+ +GRLAM M+G +
Sbjct: 931 FDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 105/218 (48%), Gaps = 38/218 (17%)
Query: 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 112
+PDR I+ P S P +L G +PGD+G+DP GL P+ +L+H RWAM
Sbjct: 55 AAPDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAM 109
Query: 113 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 172
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 110 LGAAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLF------------IIELILI 155
Query: 173 GGAEYYR-----ITNGLDLEDKLHP---------GGP----FDPLGLAK-DPDQFALLKV 213
G AE R I G D + P G P DPLG P++ L+
Sbjct: 156 GWAEGRRWADIIINPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRT 215
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
KEIKNGR+AM A++G + QA TG GP++N H++DP
Sbjct: 216 KEIKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADP 253
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
PDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ Y+ EL+HARWAMLG
Sbjct: 123 PDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAMLG 180
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-AEIVL 171
A G + PE N + E VW+K GAL+L+G +++Y G K I + + A+ A++VL
Sbjct: 181 ALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGAQVVL 240
Query: 172 VGGAE 176
+GGAE
Sbjct: 241 MGGAE 245
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 88/162 (54%), Gaps = 47/162 (29%)
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGA----------- 69
Query: 154 GKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213
+ +E++L+G E YRI G PLG +V
Sbjct: 70 ----------QIFSEVILMGAVEGYRIAGG--------------PLG-----------EV 94
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 95 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 136
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 115 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 160
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 161 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 216
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 217 TGKGPFDNLLQHLSDPWHNTIIQTLQG 243
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 104/192 (54%), Gaps = 35/192 (18%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P++LTGE PGD G+DP GLSK P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT-----NGLDL 186
WF + NL + + ++ EY+R NG D
Sbjct: 225 -----WFDLSSF----------------NLTRLGLVALQVIAPLEYWRGNRGFSWNGDDG 263
Query: 187 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D+ +PG FDPL L + K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++
Sbjct: 264 PDQSYPG--FDPLRLTDEE-----TKLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSE 316
Query: 247 HLSDPFANNLLT 258
HLS+P + N+LT
Sbjct: 317 HLSNPASVNILT 328
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 96/195 (49%), Gaps = 35/195 (17%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---DLE- 187
WF+ + D N FAV+A + +V EY+R G D E
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 188 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 IDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 247 HLSDPFANNLLTVIS 261
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 124/265 (46%), Gaps = 48/265 (18%)
Query: 5 LLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPS---PSPPLTKSSPSGMVSPDRRIF 60
+ GL++Q H T SP+ + PL ++ + P PP+ + SG ++
Sbjct: 857 MFGLEVQSHVTG--KSPITNLIDHLSHPLTANIGTNLSQPWPPVAMFASSGH---KDGLW 911
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
P +E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+
Sbjct: 912 FPN-----AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
PE K WF+ G +DG L + + A+ A EY+R
Sbjct: 967 PELLGK--------GAWFEAGD-SVDGLKLGF--------ITMAIAAPT------EYWRG 1003
Query: 181 TNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
G + + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q T
Sbjct: 1004 QGGFNWQKGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLAT 1056
Query: 237 GEGPVENLAKHLSDPFANNLLTVIS 261
GE P+ NL HL++P N+ T ++
Sbjct: 1057 GESPLANLTAHLANPLGANITTNLA 1081
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 34/197 (17%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE- 187
WF+ G +DG L + + A+ A EY+R G + +
Sbjct: 599 ------GAWFEAGD-SVDGLKLGF--------ITMAIAAPT------EYWRGQGGFNWQK 637
Query: 188 ---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL
Sbjct: 638 GDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANL 690
Query: 245 AKHLSDPFANNLLTVIS 261
+ HL++P N+ T ++
Sbjct: 691 SAHLANPIGANIATNLA 707
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 45/263 (17%)
Query: 4 VLLGLQLQVHQTLLLSSPL--LSSPRRKPPLLPSLSPSPSPPL-TKSSPSGMVSPDRRIF 60
+LGL++Q H T SPL LS P + L+ S + S S +R ++
Sbjct: 295 AMLGLEVQSHITG--KSPLVNLSEHLSNPASVNILTGGGSVAMFAGSGRKSQKSDERPLW 352
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
P L P +LTGE GD G+DP GL+ PD F + + E+ H R AML G ++
Sbjct: 353 FPNTL-----APSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALV 407
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
P+ K +W++ +N I L I + +
Sbjct: 408 PDYLGK--------GIWYEA-------------AQNAGIGLKEVAI----FTAAYGVFEV 442
Query: 181 TNGLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +Q +V G
Sbjct: 443 ARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVG 495
Query: 238 EGPVENLAKHLSDPFANNLLTVI 260
P+ NLA HL P +N+ I
Sbjct: 496 GSPLANLADHLQQPLQHNIADSI 518
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 104
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 28/207 (13%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 37 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 96
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLED 188
PE W+ D YF + + ++ ++ V + + I N G +D
Sbjct: 97 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQD 145
Query: 189 KL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
+ +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 146 PIFKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 201
Query: 237 GEGPVENLAKHLSDPFANNLLTVISGN 263
G+GP ENL +HL+DP+ N ++ ISG
Sbjct: 202 GKGPFENLQQHLADPWHNTIIQTISGQ 228
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 27 CQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 86
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 87 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 117
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 123/266 (46%), Gaps = 46/266 (17%)
Query: 23 LSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRS------------- 69
+SS + P+ +L PS S P SP + R++ L + L R
Sbjct: 1 MSSGSARAPV-AALRPSASSP----SPRFLGDSGRQLGLAKSLARRDVAVQAKGQWLPGL 55
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
P YL G + GD G+DP L++ P D + EL++ RWAMLG AG +IPE K G
Sbjct: 56 ASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGL 115
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN------- 182
PE W+ D YF + + +V ++ V + + I N
Sbjct: 116 LSAPE--WY-------DAGKETYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQD 164
Query: 183 ------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
L D +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 165 PIFKSYSLPDHDCGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 220
Query: 237 GEGPVENLAKHLSDPFANNLLTVISG 262
G+GP ENL +HL+DP+ N ++ SG
Sbjct: 221 GKGPFENLMQHLADPWHNTIIQTFSG 246
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 45 TKSSPSGMVSP---DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 101
TKSS S + P DR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 53 TKSSLSTVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFA 107
Query: 102 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 161
EL+H RWAML AG +IPE K+G E W+ G YF P L
Sbjct: 108 QAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL 156
Query: 162 VFAVIAEIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPD 206
+A + V G + N +D+E + +PGG FD + P+
Sbjct: 157 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPE 216
Query: 207 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 263
+L+ KEIKNGRLAM A +GF+ Q TG+GP+ NL HL+DP N+ + + +
Sbjct: 217 PVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTSH 273
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----K 99
+++P DR+++ + YL G +PGD+G+DP GLS P+ +
Sbjct: 36 AEATPPAKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPR 89
Query: 100 YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNI 157
+ AY E+ + R AM+G G + PE K G A+ WF+TG + G T Y+
Sbjct: 90 WLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWAD-- 146
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGP-FDP 198
P L + E+ LVG AE+ R + L LE L +PGGP F+P
Sbjct: 147 PYTLF---VFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNP 203
Query: 199 LGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
LG K + LK+KEIKNGRLAM A LGF +QA TG GPV+NL HL+DP NN+L
Sbjct: 204 LGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNIL 263
Query: 258 TVIS 261
T +
Sbjct: 264 TSLK 267
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 23 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 82
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 83 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 113/214 (52%), Gaps = 32/214 (14%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP GLS ++ AY E+ + R AM+G G I PEA K G
Sbjct: 59 YLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVG 118
Query: 129 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 183
A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 119 LVPSETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNPG 172
Query: 184 -------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAML 227
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A L
Sbjct: 173 SMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAFL 232
Query: 228 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
G LQA TG GP +NL HLSDP NN+LT +
Sbjct: 233 GMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLK 266
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 29 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 88
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 89 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 119
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 20/188 (10%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGDYGYDP + P+ YQ E+ + RWAM+G AG + +A +FG +
Sbjct: 56 PAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISD 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 191
P+ W++ GA+ + P +L + EI + E +RI+ K
Sbjct: 116 LPD--WYEAGAVAQASS---------PFDLQTLIAIEIFVFATVEGFRIST----WKKTG 160
Query: 192 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
G D +G+ PD +++KEIKNGRLAMFA +GF Q +V G GPVE L HL +P
Sbjct: 161 KPGFLDIMGM-DSPD----MRLKEIKNGRLAMFAFVGFVAQYFVNGMGPVEGLLNHLENP 215
Query: 252 FANNLLTV 259
NN+ +
Sbjct: 216 QQNNVFST 223
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P++L G +PGDYG+DP GL + + YQ EL+HARWAMLG AG PE F +
Sbjct: 51 PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIFGNPLVD- 109
Query: 132 GPEAVW----FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG--------AEYYR 179
GP W F G + D NTL + + AE+ A+ Y
Sbjct: 110 GPLPNWADAPFYDG-YIADANTL------FVVQMFLMNWAEVRRWQDMKNPGSVHADPYD 162
Query: 180 ITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+ D +PGG F+P+G+AK ++ L+ KEI NGRLAM A +G F+Q VTG
Sbjct: 163 ESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAMVAAMGCFIQHDVTGT 222
Query: 239 GPVENLAKHLSDP 251
GPV NL HL+DP
Sbjct: 223 GPVANLKAHLADP 235
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 137 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 191
W + + L+Y G I + AV A ++VL+G E YR+ G ++ D L
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGPLGEVIDPLC 60
Query: 192 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP ENLA HL+DP
Sbjct: 61 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFENLADHLADP 120
Query: 252 FANN 255
NN
Sbjct: 121 VNNN 124
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D YF + + + E +L E R + G +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTL-----FVIEFILFHSVEIRRWQDIKNPGCVNQ 161
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PG F+PL +P A K KE+ NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNV 217
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
T +GP +NL +HLSDP+ N ++ +SG
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 113/203 (55%), Gaps = 31/203 (15%)
Query: 84 GYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-W 137
G+DP GLS K+ AY E+I+ R+AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 138 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 186
F+TG + G + Y+ P L + E+ L+G AE+ R+ + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 114
Query: 187 E-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
E D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP +NL HL+DP +NN+LT +
Sbjct: 175 GPFQNLLDHLADPVSNNVLTSLK 197
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 29/227 (12%)
Query: 35 SLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 94
S + P++ + + + +R ++L D + P +L G +PGD+G+DP GL P
Sbjct: 28 SFAAPAKAPVSARASLKVQAANRELWLK----DSTVAPAHLDGTLPGDFGFDPLGLGADP 83
Query: 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 154
+ YQ EL++ARWAM+ AG E G W++ GA D
Sbjct: 84 ERLKYYQEAELMNARWAMMAVAGICTTEILGIGGP-------WYEAGAAEYD-------- 128
Query: 155 KNIPINLVFAVIAEIVLVGGAEYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKV 213
+PIN + AV + ++G E RI L + ++ P+DP+G+ + DQ AL
Sbjct: 129 --LPINALLAV--QFPVMGILELRRIRGWLATGKSGVNETFPWDPMGM--NGDQMAL--- 179
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
KE+KNGRLAM A +G +QA V GPV L H++DPF N+ T I
Sbjct: 180 KEVKNGRLAMIAFVGIVVQAIVYRTGPVAALKDHITDPFGCNMATNI 226
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 35/211 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P +L G + GDYG+DP L ++P Y EL+H R+AMLGAAG I+ K G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITN------ 182
PE W+ G ++++ N +++ P L I ++ L+G AE +Y N
Sbjct: 100 -PE--WYDAGKVVVEKNNIDF-----PTLL----ITQLYLMGWAETKRWYDFKNPGSQGD 147
Query: 183 --GLDLEDKL------HPGGPF-DPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQ 232
L D+ +PGG F DP+GL++ D D++ K KEIKNGRLAM A LGF Q
Sbjct: 148 GSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQ 207
Query: 233 AYVTGEGPVENLAKHLSDP----FANNLLTV 259
TG+GP++NLA HL+DP FA N +++
Sbjct: 208 YAATGKGPLDNLADHLADPNHVNFATNGVSI 238
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 107/211 (50%), Gaps = 28/211 (13%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY ELIH RWAMLG AG + PE
Sbjct: 60 SYLDGSLPGDYGFDPLGLSD-PEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 127 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 183
G P+ VWFK G + G T +Y+ I + A + I + A+ Y
Sbjct: 119 MGII--PQETGLVWFKAGMIPAQG-TYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGS 175
Query: 184 LDLED-------------KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
+ +D +PGG F+ + + A +K KEIKNGRLAM A G
Sbjct: 176 MGKQDFAGLEKMLGGSGDPAYPGGFFNFM--KQGEKDMAAMKTKEIKNGRLAMMACFGCG 233
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261
QA +TGEGPV+NL H+ DPF +NLL S
Sbjct: 234 AQACMTGEGPVKNLVDHVIDPFGHNLLVNFS 264
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----K 99
SSP + +R+++ + YL G +PGD+G+DP GLS P+ +
Sbjct: 36 ASSSPPAKQNDNRQLWFAS-----KQSLTYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPR 89
Query: 100 YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNI 157
+ AY E+ + R AM+G G I PEA K G A+ WF+ GA+ G T Y+
Sbjct: 90 WLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAG-TYQYWAD-- 146
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDP 198
P L + E+ L+G AE+ R+ + L LE D +PGGP F+P
Sbjct: 147 PYTLF---VFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNP 203
Query: 199 LGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
LG K + LK+KEIKNGRLAM A LG LQA TG GP +NL HLSDP NN+L
Sbjct: 204 LGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNIL 263
Query: 258 TVIS 261
T +
Sbjct: 264 TSLK 267
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D + YF + + +V ++ V + + I N G +D +
Sbjct: 119 APQ--WY-------DASKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + ++ I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSNTLFVIEFILFHYVEI--RQWQDIKNPGCVNQDPI 164
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYRLPSDECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 57/221 (25%)
Query: 72 PEYLTGEVPGDYGYDPFGLSK------------------------------KPDDFS--- 98
PE+L G +PGD G+DP GL+K PD+ S
Sbjct: 97 PEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEAVVTATPDEVSAEN 156
Query: 99 ------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 146
+++ ELIH RWAML G ++ EA W G + LD
Sbjct: 157 RLAPYSEVFGLARFRECELIHGRWAMLACLGCLVAEATTGVS--------WVDAGKVELD 208
Query: 147 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPD 206
G + Y G ++P ++ + E++LVGGAE YR T + E + +PGG FDPL LA + +
Sbjct: 209 GAS--YAGLSLPFSITQLIWIEVILVGGAEIYRNTE-TNPEKRCYPGGFFDPLKLASEDE 265
Query: 207 QFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
+ A LK EIK+ RLAM + G+ +QA+ TGEG + +LAK
Sbjct: 266 ERAFRLKTAEIKHARLAMVSFFGYSVQAFTTGEGALGSLAK 306
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 81 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 128 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYY--- 178
G PE+ VWF +GA+ G T +Y+ + I N+ AEI G +Y+
Sbjct: 140 GVI--PESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKR--GQDYWFPG 194
Query: 179 --RITNGLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
T L E +PGG F+P L KD A ++ KE+KNGRLAM A LG
Sbjct: 195 SQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLG 252
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+QA VTGEGP +N+ H++DPF N+L
Sbjct: 253 CMVQAAVTGEGPWKNICDHVADPFGANMLA 282
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 113/210 (53%), Gaps = 31/210 (14%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPD-----DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGDYG+DP GL D E+I+ R+AMLGAAG I PE + G
Sbjct: 34 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 93
Query: 129 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 183
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 94 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 147
Query: 184 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 148 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 207
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 208 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 237
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 25/203 (12%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL- 190
P+ W+ D YF + + ++ ++ V + + G +D +
Sbjct: 116 APQ--WY-------DAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIF 166
Query: 191 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
+PG F+PL +P A K KE+ NGRLAM A LGF +Q +TG+G
Sbjct: 167 KNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFMVQHGITGKG 222
Query: 240 PVENLAKHLSDPFANNLLTVISG 262
P ENL +HL DP+ N ++ +SG
Sbjct: 223 PFENLLQHLFDPWHNTIIQTLSG 245
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + +V ++ V + + I N G +D +
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 239 GPVENLAKHLSDPFANNLLTVISG 262
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 28/208 (13%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 69 SYLDGSLPGDYGFDPLGLSD-PEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 127 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 183
G P+ VW+K G + G T +Y+ I + A + + A+ Y
Sbjct: 128 LGII--PQETGLVWYKAGMIPAQG-TYDYWANPFTIFWINAALMNFAELRRAQDYWNPGS 184
Query: 184 LDLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
+ ++ + +PGG F+ +G K A ++VKEIKNGRLAM A
Sbjct: 185 MGKQELIGWEKMLGGSGEPAYPGGFFNIMGQGKS--DMAKMRVKEIKNGRLAMMACFACG 242
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLLT 258
QA +TGEGPV+NL H+SDPF +NLL
Sbjct: 243 AQAVMTGEGPVKNLIDHVSDPFGHNLLV 270
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 111/207 (53%), Gaps = 29/207 (14%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP G+S ++ AY E+IH RWAMLG AG + PE G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 129 ---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 182
A+ G VWFK+GA+ G T +Y+ I N+V AE V G +Y +
Sbjct: 157 IIPADTG--LVWFKSGAIPPQG-TFDYWADPTTIFWVNMVLMNFAE-VKRGQDYWYPGSQ 212
Query: 183 G----LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 230
G + E +PGG F+ L K A ++ KEIKNGRLAM A LG
Sbjct: 213 GETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKT--DMAKMQKKEIKNGRLAMMAFLGIA 270
Query: 231 LQAYVTGEGPVENLAKHLSDPFANNLL 257
+QA TGEGP +N+ H+SDPFANN+L
Sbjct: 271 VQAVATGEGPFKNIVDHISDPFANNML 297
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 75/97 (77%), Gaps = 3/97 (3%)
Query: 162 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 218
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 17 ILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKN 76
Query: 219 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 77 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 57/221 (25%)
Query: 72 PEYLTGEVPGDYGYDPFGLSK------------------------------KPDDFS--- 98
PE+L G +PGD G+DP GLSK PD+ S
Sbjct: 60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSEN 119
Query: 99 ------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 146
+++ ELIH RWAML G ++ EA W + G + LD
Sbjct: 120 RLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELD 171
Query: 147 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPD 206
G +Y G ++P ++ + E++LVGGAE+YR + + E + +PGG FDPL LA + +
Sbjct: 172 G--ASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRCYPGGVFDPLKLASEDE 228
Query: 207 QFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
+ A LK EIK+ RLAM + G+ +QA TGEG + +LAK
Sbjct: 229 ERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 31/210 (14%)
Query: 74 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 129 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 183
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 184 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 109/201 (54%), Gaps = 17/201 (8%)
Query: 57 RRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
R+ FLP LL+ + +P YLTGE+PGD G+DP + + D K + ELIH RWAML
Sbjct: 1244 RKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQ-RDIMKLRERELIHGRWAML 1302
Query: 114 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVFAVIAEI 169
A G ++PE+ + P W+ T N+ L Y G+NIP + + I +
Sbjct: 1303 AAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIPWGVFWLPIIHL 1362
Query: 170 VLVGGAEYYRITNGLDLE-----DKLHPGGP-FDPLGLAK--DPDQFALLKVKEIKNGRL 221
L AE R T L++E D+L+PGG FDPLG+ ++ +LK EI++ RL
Sbjct: 1363 PLFFVAEMLR-TGRLEVEAFKDLDRLYPGGKLFDPLGIGGGVSDEELKILKTIEIQHCRL 1421
Query: 222 AMFAMLGFFLQAYVTGEGPVE 242
AM A GF ++A G GP++
Sbjct: 1422 AMIASFGFIVEALAWGAGPLD 1442
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G DP GL++ P+ Y EL++ RWAMLG AG IPE G
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSXTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPIXKSYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQG 250
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 31/210 (14%)
Query: 74 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 129 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 183
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 184 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 228
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 229 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P+YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKSYSLPPNKCGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP +NL +HL DP+ N ++ +S
Sbjct: 228 GPFDNLLQHLFDPWHNTIIQTLS 250
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 187
P+ W+ D YF + + + E +L E R + G +
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTL-----FVVEFILFXYVEIRRWQDIKNPGSVNQ 164
Query: 188 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
D + +PG F+PL A + K KE+ NGRLAM A LGF +Q V
Sbjct: 165 DPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNV 220
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
TG+GP +NL +HLSDP+ N ++ SG
Sbjct: 221 TGKGPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 134 EAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--D 188
EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 5 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 64
Query: 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 248
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 65 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHF 124
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 110/211 (52%), Gaps = 23/211 (10%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPE 122
S+ YL G +PGD+G+DP GL P+ ++ AY E+IH RWAMLG AGF+ PE
Sbjct: 58 SQALGYLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPE 116
Query: 123 AFNKFGA--NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
GA EAVWF++G + G Y+ + V A++ + + Y+
Sbjct: 117 VLATIGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQS 176
Query: 181 TNG------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE + +PGG F + L L K P+ L+ EI+NGRLAM A
Sbjct: 177 PGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIAC 236
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
LG F QA +T +GP NL HL+DP +NN+L
Sbjct: 237 LGCFGQAVMTTKGPFANLLDHLADPISNNVL 267
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 115/219 (52%), Gaps = 38/219 (17%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFSK-------YQAYELIHARWAMLGAAGFIIPEAFN 125
YL G +PGD+G+DP GL S EL+HARWAMLGAAG + PE
Sbjct: 12 SYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYLA 71
Query: 126 KFGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG------GAE 176
P+A +WFKTG L +Y +P+ ++FAV ++V++G GAE
Sbjct: 72 H--EKVIPKATGLLWFKTGFLPQASAGFDY---GLPLGVLFAV--QMVMMGVAEGLRGAE 124
Query: 177 YY-----RITNGLDLEDKL---------HPGG-PFDPLGLAKDPDQFALLKVKEIKNGRL 221
Y R L LE + +PGG F+PLGL + P ++ EI++GRL
Sbjct: 125 YIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGRL 184
Query: 222 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
AM A LG+ QA VTG GP +N +HL +P NN+L+++
Sbjct: 185 AMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLL 223
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 29/205 (14%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRL M A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGK 226
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +H+SDP+ N ++ + GN
Sbjct: 227 GPFDNLLQHISDPWHNTIVQTLGGN 251
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----K 99
SSP + +R+++ + YL G +PGD+G++P GLS P+ +
Sbjct: 36 ASSSPPAKQNDNRQLWFAS-----KQSLTYLDGTLPGDFGFNPLGLSD-PEGTGGFIEPR 89
Query: 100 YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNI 157
+ AY E+ + R AM+G G I PEA K G A+ WF+ GA+ G T Y+
Sbjct: 90 WLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAG-TYQYWAD-- 146
Query: 158 PINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDP 198
P L + E+ L+G AE+ R+ + L LE D +PGGP F+P
Sbjct: 147 PYTLF---VFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNP 203
Query: 199 LGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257
LG K + LK+KEIKNGRLAM A LG LQA TG GP +NL HLSDP NN+L
Sbjct: 204 LGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNIL 263
Query: 258 TVIS 261
T +
Sbjct: 264 TSLK 267
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 111/203 (54%), Gaps = 31/203 (15%)
Query: 84 GYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-W 137
G+DP GLS K+ AY E+I+ R+AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 138 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 186
F+TG + G + Y+ P L + E+ L+G AE+ R + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRFQDWYNPGSMGKQYFLGL 114
Query: 187 EDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
E L +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 239 GPVENLAKHLSDPFANNLLTVIS 261
GP +NL HL+DP NN+LT +
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSLK 197
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 104/197 (52%), Gaps = 14/197 (7%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+++P YL G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G
Sbjct: 65 ADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIG 124
Query: 129 ANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-----AEIVLVGGAEYYRITN 182
+ G W+ G + FG + L+FA + + V G A I
Sbjct: 125 FSWPGAGVAWYDAGKFEYFAPASSLFGVQM---LLFAWVEIRRYQDFVKPGSANQDPIFT 181
Query: 183 GLDLEDKL---HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
L D +PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG
Sbjct: 182 NNKLPDGNEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTT 239
Query: 240 PVENLAKHLSDPFANNL 256
P++NL+ HL+DP++ +
Sbjct: 240 PLKNLSTHLADPWSTTV 256
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP L++ P++ + EL++ RWA LG AG ++PE G
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A P + A K +E+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNEVGYPGGIFNPLNFA--PTEEA--KERELANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +HLSDP+ N ++ +SGN
Sbjct: 228 GPFDNLLQHLSDPWHNTIVQTLSGN 252
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 14/198 (7%)
Query: 69 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128
+++P YL G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G
Sbjct: 65 ADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIG 124
Query: 129 ANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-----AEIVLVGGAEYYRITN 182
+ G W+ G + FG + L+FA + + V G A I
Sbjct: 125 FSWPGAGVAWYDAGKFEYFAPASSLFGVQM---LLFAWVEIRRYQDFVKPGSANQDPIFT 181
Query: 183 GLDLEDKL---HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239
L D +PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG
Sbjct: 182 NNKLPDGNEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTT 239
Query: 240 PVENLAKHLSDPFANNLL 257
P++NL+ HL+DP++ +
Sbjct: 240 PLKNLSTHLADPWSTTVW 257
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 28/202 (13%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE +G
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 182
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 183 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
L D +PGG F+PL +P A + KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNDVGYPGGIFNPLNF--EPTLEA--REKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 239 GPVENLAKHLSDPFANNLLTVI 260
GP +N +H+SDP+ N ++ +
Sbjct: 228 GPFDNFMQHISDPWHNTIVQTL 249
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 121/274 (44%), Gaps = 72/274 (26%)
Query: 18 LSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTG 77
+S P ++ R L+ + +P PP P ++LP +E P +L G
Sbjct: 41 VSRPAMTRIARNT-LVNAARKAPPPPKNNEDP---------LWLPN-----TERPGWLDG 85
Query: 78 EVPGDYGYDPFGLSKKPD------------------------------------------ 95
+PGD G+DP GLSK +
Sbjct: 86 SLPGDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQYDGGIDEVNTENSLSPYS 145
Query: 96 ---DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNY 152
+++ ELIH RWAML G I+ E W + G + LDG Y
Sbjct: 146 DIFGLRRFRECELIHGRWAMLATLGAIVAE--------LSTGVPWDQAGKVELDG--ARY 195
Query: 153 FGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA-KDPDQFALL 211
++P + + E++LVGGAE YR T DL+ +L+PGG FDPLG K +Q L
Sbjct: 196 LNFDLPFTVSQLTLLEVLLVGGAEIYRNTE-TDLDKRLYPGGTFDPLGFTTKSDEQTMRL 254
Query: 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245
+ EIK+GRLAM A G +QA+ TGEG +ENL+
Sbjct: 255 REAEIKHGRLAMVAAFGCGVQAFTTGEGLIENLS 288
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 128
YL G +PGD+G+DP GL + K+ Y E+IH RWAMLGAAG I PE
Sbjct: 57 YLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILG--A 114
Query: 129 ANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
A PE VW+++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWAD--PYTIFFI---EIVAMQFAELRRLQDFRY 169
Query: 184 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 170 PGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 229
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LG+ QA +T EGP +NL HL+DP NN+LT
Sbjct: 230 LGYGAQATLTREGPFQNLLDHLADPVNNNILT 261
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 128/272 (47%), Gaps = 51/272 (18%)
Query: 18 LSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTG 77
LS P+L SP L + S + P+ ++ +V +R ++LP G + P +L G
Sbjct: 10 LSRPILGSP------LAARQVSRARPVRQT----VVRAERALWLPGG-----DAPAHLDG 54
Query: 78 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 137
+PGD+G+DP GL P+ + + E +HARWAML AG + E P+ W
Sbjct: 55 SLPGDFGFDPLGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVVR-------PDVFW 107
Query: 138 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------------T 181
++ + FG N P ++ V E+ + E R
Sbjct: 108 YEAAL-----KSPMPFG-NSPAAILGLVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSN 161
Query: 182 NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241
N L + +PGG F P+ P A LK+KEIKNGRLAM A GF +QA VTG+GP+
Sbjct: 162 NKLPKHEVGYPGGIFAPV----IPGDLAELKLKEIKNGRLAMLAFAGFVMQAQVTGKGPL 217
Query: 242 ENLAKHLSDPFANNLLT---VISGNAERAPTL 270
+L HLS+P + + VI G A P +
Sbjct: 218 ASLGDHLSNPIGTTIFSKAVVIPGQAIVPPCM 249
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 162 VFAVIA-EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 214
+ A++A +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVK
Sbjct: 11 LLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVK 69
Query: 215 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269
EIKNGRLAM MLGF+ QA VTGEGPVEN HL DP A+N LT + + APT
Sbjct: 70 EIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALV--TQFAPT 122
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 114/212 (53%), Gaps = 37/212 (17%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 127
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE +
Sbjct: 74 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ- 131
Query: 128 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRIT 181
A PE+ VWF +GA+ G T +Y+ + I N+ AEI G +Y+
Sbjct: 132 -AGLIPESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKR--GQDYWY-- 185
Query: 182 NGLDLEDKL--------------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
G E L +PGG F+ GL KD A ++ KEIKNGRLAM A
Sbjct: 186 PGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGKD--DMAKMQKKEIKNGRLAMMAF 243
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
LG +QA VTGEGP +N+ H++DPF N+L
Sbjct: 244 LGCMVQAVVTGEGPWKNICDHVADPFGANMLA 275
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 179
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 180 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 100 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 158
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 1 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 52
Query: 159 INLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 217
+ ++A E + + E+ R D E K +PGG FDPLG +KDP + LKVKEIK
Sbjct: 53 WGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIK 111
Query: 218 NGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 260
NGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 112 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 155
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 167 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 23 CQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 82
Query: 225 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 255
+M GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 83 SMFGFFVQAIVTGKGPLENLADGLADPVNNN 113
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 179
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 180 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 235
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 236 TGEGPVENLAKHLSDPFANNLLTVISG 262
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 114/213 (53%), Gaps = 46/213 (21%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 113
S +R +++P + P +LTGE PGD G+DP GLSK P F++ + E+ H R AML
Sbjct: 5 SGERLLWIPN-----ATPPAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAML 59
Query: 114 GAAGFIIPEA-FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-INLV-FAVIAEIV 170
G G + E FNK WF +Y ++P + L+ VIA +
Sbjct: 60 GIVGCVGQEWLFNK--------GAWF------------DYSDFDLPRLGLIALQVIAPL- 98
Query: 171 LVGGAEYYRIT-----NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 225
EY+R NG D D+ +PG FDPLGL + K++EIKNGRLAM A
Sbjct: 99 -----EYWRGNGGFSWNGNDGPDRSYPG--FDPLGLTTEDT-----KLREIKNGRLAMSA 146
Query: 226 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 258
MLG +Q+++TG+ P+ NL HLS PF N+LT
Sbjct: 147 MLGLEVQSHITGKSPLTNLGDHLSSPFTANILT 179
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 128/265 (48%), Gaps = 49/265 (18%)
Query: 5 LLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPSPSPPLTKSSPSGMVSPDRR---IF 60
+LGL++Q H T + SPL++ K PL +++ S + P M + ++
Sbjct: 330 MLGLEVQRHVTGV--SPLVNLVEHVKHPLNHNIAES----VMHQWPVAMFAATGHKDGVW 383
Query: 61 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 120
P ++ P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+
Sbjct: 384 FPG-----AQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIV 438
Query: 121 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 180
PE K WF+ G +DG I L F ++A + EY+R
Sbjct: 439 PELLGK--------GAWFEVGN-SVDG-----------IKLGFILMA---IAAPTEYWRG 475
Query: 181 TNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
G + + D+ +PG FDPL L D K EIKNGRLAM +LG Q T
Sbjct: 476 NGGFNWDKGTADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLAT 528
Query: 237 GEGPVENLAKHLSDPFANNLLTVIS 261
GE P+ NLA HL++P N+ T ++
Sbjct: 529 GESPLANLAAHLANPVGANITTTLA 553
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 46/264 (17%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPS---PSPPLTKSSPSGMVSPDRRIFL 61
+ GL++Q H T L R P L ++ S P PP+ + +G ++
Sbjct: 702 MFGLEVQNHVTAQGPVANLIEHLRHP-LAANIGASLAHPWPPVAMFATTGH---KDGVWF 757
Query: 62 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 121
P ++ P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+P
Sbjct: 758 PG-----AQPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILP 812
Query: 122 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 181
E K WF+ G + DG I L F ++A + EY+R
Sbjct: 813 ELLGK--------GAWFEVGNSV-DG-----------IKLGFILMA---IAAPTEYWRGN 849
Query: 182 NGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237
G + + D+ +PG FDPL L D K EIKNGRLAM +LG Q TG
Sbjct: 850 GGFNWDKGTADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLATG 902
Query: 238 EGPVENLAKHLSDPFANNLLTVIS 261
E P+ NLA HL++P N+ T ++
Sbjct: 903 ESPLANLAAHLANPVGANITTTLA 926
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 35/190 (18%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTGE P D G+DP GL+ P + + + E+ + R AML G + PE
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELLGN----- 627
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE---- 187
VWF+ N ++++ FA+I+ + +V EY+R G +
Sbjct: 628 ---GVWFEVW------NKVDFY--------RFALIS-LQVVAPLEYWRGNGGFGWDGEEK 669
Query: 188 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246
D+ +PG FDP L + K EIKNGRLAM M G +Q +VT +GPV NL +
Sbjct: 670 YDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIE 722
Query: 247 HLSDPFANNL 256
HL P A N+
Sbjct: 723 HLRHPLAANI 732
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 117/265 (44%), Gaps = 57/265 (21%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPL------LSSPRRKPPLLPSLSPSPSPPLTKSSPSGMVS 54
MSA +LGL++Q H T SPL LSSP L S + S SG V
Sbjct: 144 MSA-MLGLEVQSHITG--KSPLTNLGDHLSSPFTANILTGGGS------VAMFSTSGKV- 193
Query: 55 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 114
DR ++ P G P YLTG+ GD G+DP GL+ P F + + E+ H R AML
Sbjct: 194 -DRPLWFPGGY-----APSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLA 247
Query: 115 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 174
G ++P+ K W++ I +N V A +V
Sbjct: 248 IVGAVVPDILGK--------GAWYEAAQ-----------NAGIGVNEVAVFTAAYGVV-- 286
Query: 175 AEYYRITNGLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 231
+ GL K +PG FDPL L D K EIKNGRLA+ MLG +
Sbjct: 287 ----EVARGLKANSDPTKNYPG--FDPLKLTTD-----YTKEAEIKNGRLALTGMLGLEV 335
Query: 232 QAYVTGEGPVENLAKHLSDPFANNL 256
Q +VTG P+ NL +H+ P +N+
Sbjct: 336 QRHVTGVSPLVNLVEHVKHPLNHNI 360
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 94/195 (48%), Gaps = 31/195 (15%)
Query: 74 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 133
+L G +PGD+G+DP LS P+ EL HARWAMLG AG + PE K G P
Sbjct: 51 HLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLP 110
Query: 134 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT------------ 181
V D T Y+ P+ + ++ + AE R
Sbjct: 111 NWV---------DAGTYQYWAPAGPLFFI-----QMAMFNWAEVRRWQDMKNPGSMNTDP 156
Query: 182 ----NGLDLE-DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236
N D D +PGG FD LG AKDP + LK+KEIKNGRLAM A LG Q T
Sbjct: 157 LFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQT 216
Query: 237 GEGPVENLAKHLSDP 251
G+GPVENL H++ P
Sbjct: 217 GQGPVENLFSHIASP 231
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,047,892,992
Number of Sequences: 23463169
Number of extensions: 248880433
Number of successful extensions: 852046
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 844719
Number of HSP's gapped (non-prelim): 2924
length of query: 270
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 130
effective length of database: 9,074,351,707
effective search space: 1179665721910
effective search space used: 1179665721910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)