BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024235
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 133/194 (68%), Gaps = 6/194 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 90
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL-- 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 91 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 149
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 150 EVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 209
Query: 245 AKHLSDPFANNLLT 258
A HL+DP NN +
Sbjct: 210 ADHLADPVNNNAWS 223
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 133/194 (68%), Gaps = 6/194 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGV 90
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL-- 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 91 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 149
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 150 EVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 209
Query: 245 AKHLSDPFANNLLT 258
A HL+DP NN +
Sbjct: 210 ADHLADPVNNNAWS 223
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 70 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 129
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 90
Query: 130 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL-- 184
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 91 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLG 149
Query: 185 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 150 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 209
Query: 245 AKHLSDPFANN 255
A HL+DP NN
Sbjct: 210 ADHLADPVNNN 220
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 58 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 117
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 118 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 175
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 176 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 234
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 235 VTGEGPVENLAKHLSDPFANNLLTVI 260
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 132 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 189
W K L G Y G +P + ++A E + + E+ R D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 117
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 248
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 177
Query: 249 SDPFANNL 256
+DP+ NN+
Sbjct: 178 ADPWHNNI 185
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Query: 79 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 138
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W
Sbjct: 2 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WV 53
Query: 139 KTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPF 196
K L G Y G +P + ++A E + + E+ R D E K +PGG F
Sbjct: 54 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAF 112
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 252
DPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 113 DPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 73 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 126
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 127 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 183
G A+ WF+TG + T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 184 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 227 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 60/248 (24%)
Query: 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------ 95
S DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 8 STDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLA 62
Query: 96 -------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130
+++ ELIH RWAML G + E
Sbjct: 63 GDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI--- 119
Query: 131 CGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 189
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +
Sbjct: 120 -----TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDTEKR 171
Query: 190 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
L+PGG FDPLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N HLS
Sbjct: 172 LYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231
Query: 250 DPFANNLL 257
DP +L
Sbjct: 232 DPLHTTIL 239
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 52 MVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 111
+ PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWA
Sbjct: 59 VAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWA 113
Query: 112 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 171
MLGAAG IPE K G P W+ G +T F I E+V
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVF 159
Query: 172 VGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKV 213
+G AE R N L D +PGG FDPLG + P + L+
Sbjct: 160 IGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRT 219
Query: 214 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 254
KEIKNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 220 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 180
P W+ G +T F I E+V +G AE R
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRRWADILNPGCVNT 106
Query: 181 -----TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 233
N L D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q
Sbjct: 107 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 166
Query: 234 YVTGEGPVENLAKHLSDP 251
TG GP++NL HL+DP
Sbjct: 167 IYTGTGPIDNLFAHLADP 184
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 29/205 (14%)
Query: 72 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 131
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 132 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 190
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 191 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238
+PGG F+PL A + K KEI NGRL M A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGK 226
Query: 239 GPVENLAKHLSDPFANNLLTVISGN 263
GP +NL +H+SDP+ N ++ + GN
Sbjct: 227 GPFDNLLQHISDPWHNTIVQTLGGN 251
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 92/166 (55%), Gaps = 26/166 (15%)
Query: 104 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 162
E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T Y+ N +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTL--- 61
Query: 163 FAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-DPLGLAK 203
+ E+ L+G AE+ R+ + L LE L +PGGPF +PLG K
Sbjct: 62 --FVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK 119
Query: 204 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 249
D LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+
Sbjct: 120 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 83/176 (47%), Gaps = 32/176 (18%)
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P+ EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF 60
Query: 154 GKNIPINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PF 196
I E+V +G AE R N L D +PGG F
Sbjct: 61 ------------IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWF 108
Query: 197 DPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 251
DPLG + P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 109 DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 90/166 (54%), Gaps = 27/166 (16%)
Query: 99 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKN 156
++ AY E+I+ R+AMLGA G I PE K G A+ WF+TG + G T NY+ N
Sbjct: 13 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADN 71
Query: 157 IPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGPF-D 197
+ + E+ L+G AE+ R + L LE +PGGPF +
Sbjct: 72 YTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFN 126
Query: 198 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 243
PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +N
Sbjct: 127 PLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 28/180 (15%)
Query: 94 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 153
P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYF 51
Query: 154 GKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLG 200
+ + ++ +++ V + + I N G +D + +PGG F+PL
Sbjct: 52 ASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLN 109
Query: 201 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 260
A + K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ +
Sbjct: 110 FAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 29/181 (16%)
Query: 90 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 149
L++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------K 51
Query: 150 LNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPF 196
YF + + ++ +++ V + + I N G +D + +PGG F
Sbjct: 52 EEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF 109
Query: 197 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 256
+PL A + K KEI NGRL M A LGF +Q VTG+GP +NL +H+SDP+ N +
Sbjct: 110 NPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 164
Query: 257 L 257
+
Sbjct: 165 V 165
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 124 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 169
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHTQS--ADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 147 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 198
Query: 124 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 169
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 199 VNRRGHT--QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 244
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 124 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 169
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHTQS--ADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 64 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 150 GIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEK-KAY-------SFCGTVEYMAPEV 201
Query: 124 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 169
N+ G + A W+ G L+ + +L + GK+ + + A++
Sbjct: 202 VNRQGHSHS--ADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKL 247
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 27/140 (19%)
Query: 84 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE-AVWFKTGA 142
G P G +K FS +AY+++ A A +G + F++ N+F N V F+
Sbjct: 13 GLVPRGSAK---SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT 69
Query: 143 LLLDGNTL------------------NYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 184
L++DG +YF K + L++ V E + E+ +
Sbjct: 70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM---- 125
Query: 185 DLEDKLHPGGPFDPLGLAKD 204
+ED H P +G D
Sbjct: 126 -IEDAAHETVPIMLVGNKAD 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,233,882
Number of Sequences: 62578
Number of extensions: 375052
Number of successful extensions: 650
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 28
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)