Query 024235
Match_columns 270
No_of_seqs 228 out of 1164
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 3.3E-64 7.1E-69 459.1 18.6 210 48-261 42-256 (262)
2 PLN00187 photosystem II light- 100.0 1.4E-62 3.1E-67 452.4 17.2 199 49-262 44-286 (286)
3 PLN00171 photosystem light-ha 100.0 5E-62 1.1E-66 453.8 17.2 214 45-261 96-323 (324)
4 PLN00098 light-harvesting comp 100.0 1.4E-60 3.1E-65 436.2 17.6 198 46-262 51-266 (267)
5 PLN00048 photosystem I light h 100.0 1.7E-60 3.6E-65 435.3 15.6 230 11-262 5-261 (262)
6 PLN00101 Photosystem I light-h 100.0 2.3E-60 4.9E-65 431.4 16.3 190 49-261 45-250 (250)
7 PLN00097 photosystem I light h 100.0 2.8E-59 6E-64 422.8 15.9 191 49-257 36-243 (244)
8 PLN00147 light-harvesting comp 100.0 1.3E-58 2.7E-63 420.7 15.6 199 46-262 34-251 (252)
9 PLN00099 light-harvesting comp 100.0 1.5E-58 3.4E-63 418.4 14.8 195 54-262 41-238 (243)
10 PLN00100 light-harvesting comp 100.0 3.4E-56 7.4E-61 402.5 13.9 186 44-259 22-208 (246)
11 PLN00170 photosystem II light- 100.0 9.3E-49 2E-53 356.0 13.5 176 52-245 46-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 1.8E-40 3.9E-45 281.1 11.4 147 71-234 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 4.4E-39 9.6E-44 286.3 12.6 155 69-241 44-207 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.4E-33 3.1E-38 250.0 12.7 145 85-241 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 2E-15 4.3E-20 139.0 6.9 72 188-259 76-155 (267)
16 PLN00101 Photosystem I light-h 99.6 4E-15 8.7E-20 135.9 5.9 54 188-241 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 1.9E-14 4.2E-19 131.6 5.6 52 188-239 59-111 (252)
18 PLN00170 photosystem II light- 99.5 7.3E-14 1.6E-18 127.9 5.7 54 188-241 71-125 (255)
19 PLN00097 photosystem I light h 99.4 1.1E-13 2.4E-18 126.1 5.6 53 188-240 58-111 (244)
20 PLN00171 photosystem light-ha 99.4 1E-13 2.3E-18 130.2 5.4 53 188-240 124-177 (324)
21 PLN00025 photosystem II light 99.4 1.8E-13 3.9E-18 125.9 5.5 52 188-239 67-119 (262)
22 PLN00048 photosystem I light h 99.4 1.3E-13 2.9E-18 126.8 3.4 53 76-128 186-238 (262)
23 PLN00100 light-harvesting comp 99.4 2.9E-13 6.3E-18 123.3 5.3 49 188-236 49-98 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 3.1E-13 6.8E-18 120.8 4.1 52 77-128 153-205 (209)
25 PLN00187 photosystem II light- 99.3 4.8E-13 1E-17 124.3 3.7 53 76-128 211-263 (286)
26 PLN00099 light-harvesting comp 99.3 7.8E-13 1.7E-17 120.6 4.9 50 188-237 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 5.1E-12 1.1E-16 107.1 5.4 50 188-238 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 3.5E-11 7.5E-16 107.2 3.3 45 190-234 41-87 (202)
29 PHA02337 putative high light i 98.1 1.7E-06 3.8E-11 56.7 2.8 28 213-240 4-31 (35)
30 PLN00084 photosystem II subuni 98.0 4.1E-06 9E-11 72.9 3.0 49 206-254 130-179 (214)
31 PLN00014 light-harvesting-like 97.4 9.7E-05 2.1E-09 67.1 3.0 35 212-246 160-194 (250)
32 PHA02337 putative high light i 97.0 0.00027 5.9E-09 46.4 1.3 28 101-128 3-30 (35)
33 PLN00014 light-harvesting-like 95.6 0.0035 7.5E-08 57.2 0.2 29 100-128 159-187 (250)
34 PLN00084 photosystem II subuni 90.9 0.084 1.8E-06 46.5 0.6 34 95-128 130-164 (214)
35 PLN02449 ferrochelatase 48.0 13 0.00028 37.8 2.3 21 221-241 463-483 (485)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=3.3e-64 Score=459.11 Aligned_cols=210 Identities=54% Similarity=0.925 Sum_probs=185.2
Q ss_pred CCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccC
Q 024235 48 SPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127 (270)
Q Consensus 48 ~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~ 127 (270)
+.+.|||++|++|| |+++ .+.|+||||++|||+||||+||++|+++++|||++|||||||||||++||++||+++..
T Consensus 42 ~~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~ 118 (262)
T PLN00025 42 SGSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKN 118 (262)
T ss_pred ccccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcC
Confidence 46789999999999 4565 58999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCchhhhccccccCCCcccccCCCchh--H-HHHHHHHHHHHHhhhhhhhhhcCC--CCCCCCCCCCCCCCCCCC
Q 024235 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--N-LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLA 202 (270)
Q Consensus 128 G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~--~-~~~a~~~qv~l~G~~E~~r~~~g~--~~~d~~~PGg~FDPLgl~ 202 (270)
|..+. +.+||++|..+++.+.++|++++..+ + +...+++|+++||++|.+|+.++. ...|+.||||+||||||.
T Consensus 119 g~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~ 197 (262)
T PLN00025 119 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLA 197 (262)
T ss_pred CcCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccC
Confidence 66443 56899999887877788999987543 2 233457799999999999987632 113568999999999999
Q ss_pred CChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhh
Q 024235 203 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261 (270)
Q Consensus 203 ~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 261 (270)
+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+|||+++++.
T Consensus 198 ~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 198 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999753
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.4e-62 Score=452.43 Aligned_cols=199 Identities=42% Similarity=0.793 Sum_probs=175.8
Q ss_pred CCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhh--------------------------------
Q 024235 49 PSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------- 96 (270)
Q Consensus 49 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~-------------------------------- 96 (270)
.+.+|+++|++|+|+ .++|+||||++|||||||||||+++|+.
T Consensus 44 ~~~~~~~~r~~w~p~-----~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T PLN00187 44 KSSKVGADRPLWFPG-----AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKS 118 (286)
T ss_pred CccCCCCCccccCCC-----CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccc
Confidence 567899999999996 7899999999999999999999998885
Q ss_pred -----------hhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHH
Q 024235 97 -----------FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 165 (270)
Q Consensus 97 -----------~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~ 165 (270)
++||||+|||||||||||++||++||+++ ...|+++|...+..+ .+|++.+.++.+..++
T Consensus 119 ~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~ 189 (286)
T PLN00187 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLI 189 (286)
T ss_pred cccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHH
Confidence 69999999999999999999999999974 225999997654332 3588877666555667
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhh
Q 024235 166 IAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 244 (270)
Q Consensus 166 ~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL 244 (270)
++|+++||++|.+|+.+ .+..+..||||. ||||||.+|+++++++|++|||||||||+||+||++|+++||+||++||
T Consensus 190 ~iqvllmG~~E~~R~~~-~~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL 268 (286)
T PLN00187 190 WIEVLVIGYIEFQRNAE-LDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 268 (286)
T ss_pred HHHHHHHHHHHhhhccC-CCCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 89999999999999864 233466799997 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcchhHHHHhhc
Q 024235 245 AKHLSDPFANNLLTVISG 262 (270)
Q Consensus 245 ~~~ladP~~~n~~~~~~~ 262 (270)
.+|++||+||||+++|++
T Consensus 269 ~~Hladp~~~n~~~~~~~ 286 (286)
T PLN00187 269 ATHLSDPLHTTIIDTFSS 286 (286)
T ss_pred HHHhcCcccccHHHhccC
Confidence 999999999999999863
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=5e-62 Score=453.78 Aligned_cols=214 Identities=48% Similarity=0.788 Sum_probs=184.2
Q ss_pred CCCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhh
Q 024235 45 TKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124 (270)
Q Consensus 45 ~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~ 124 (270)
..++.+.|||++|++|||. ++ .++|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 3445688999999999963 32 47999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchhhhccccccCCCcccccCCCch-----hHHHHHHHHHHHHHhhhhhhhhhcCC--------CCCCCCC
Q 024235 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITNGL--------DLEDKLH 191 (270)
Q Consensus 125 ~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p-----~~~~~a~~~qv~l~G~~E~~r~~~g~--------~~~d~~~ 191 (270)
++.|....++++||++|...+++..++|++.+.. ..+..++++|+++|+++|++|+.+-. ..+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8876543346789999987777777778776531 12344568899999999998876411 1235568
Q ss_pred CCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhh
Q 024235 192 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261 (270)
Q Consensus 192 PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 261 (270)
|||. |||||+.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||+++|.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999974
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.4e-60 Score=436.19 Aligned_cols=198 Identities=42% Similarity=0.767 Sum_probs=171.8
Q ss_pred CCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhc
Q 024235 46 KSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125 (270)
Q Consensus 46 ~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~ 125 (270)
++..+.+|+++|++|+|+ .+.|+||||++|||+||||+||++++++++|||++|||||||||||++|+++||+++
T Consensus 51 ~~~~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~ 125 (267)
T PLN00098 51 VSSVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLE 125 (267)
T ss_pred cccccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 444677899999999996 789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhcC----C-C-----------CCCC
Q 024235 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L-D-----------LEDK 189 (270)
Q Consensus 126 ~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~g----~-~-----------~~d~ 189 (270)
+.|... ...|+++|.. +|++.+. .++++|+++||++|.+|+++- . . ..|.
T Consensus 126 ~~g~~~--~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~ 191 (267)
T PLN00098 126 RLGFIE--NFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDV 191 (267)
T ss_pred CCCccc--ccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCC
Confidence 776532 3479998853 3554432 235779999999999997641 1 0 0145
Q ss_pred CCCCCC-CCCCCCCC-ChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 190 LHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 190 ~~PGg~-FDPLgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
.||||+ ||||||.+ |+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||+++|++
T Consensus 192 ~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 799999 99999975 89999999999999999999999999999999999999999999999999999999875
No 5
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.7e-60 Score=435.26 Aligned_cols=230 Identities=40% Similarity=0.669 Sum_probs=185.4
Q ss_pred hhhhhhhcCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 024235 11 QVHQTLLLSSPLLSSPR-RKPPLLPSLSPSPSPPLTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 89 (270)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLG 89 (270)
|..+..+++++..|.+. |++++||++. .....++++|++|+|+ .+.|+||||++||||||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlG 69 (262)
T PLN00048 5 QTARRALSSSAARSSSAKKARFVVRAEA----------TPPAKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLG 69 (262)
T ss_pred HHHHHHhcccccccccccccceeEeccc----------CCCCCCCCCCceecCC-----CCCccccCCCCCCccCCCccc
Confidence 34445555666666655 5556666553 1234567799999995 789999999999999999999
Q ss_pred CCCChh------hhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCC-CCchhhhccccccCCCcccccCCCchhHHH
Q 024235 90 LSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG-PEAVWFKTGALLLDGNTLNYFGKNIPINLV 162 (270)
Q Consensus 90 ls~~~~------~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~-p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~ 162 (270)
|++ ++ +.+|+|++|||||||||||++|+++||++++.|.... ....|+++|+.. ..+..+|++.+.
T Consensus 70 L~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~-~~~~~~y~~~p~----- 142 (262)
T PLN00048 70 LSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIP-PAGTYDYWADPY----- 142 (262)
T ss_pred cCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccc-cccccccccchh-----
Confidence 984 33 5799999999999999999999999999988775422 123699998632 233456777642
Q ss_pred HHHHHHHHHHhhhhhhhhhc----CC--------------CCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHH
Q 024235 163 FAVIAEIVLVGGAEYYRITN----GL--------------DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 223 (270)
Q Consensus 163 ~a~~~qv~l~G~~E~~r~~~----g~--------------~~~d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAM 223 (270)
..+++|+++||++|.+|+++ |. ..+|..||||+ ||||||.+|+|+++++|++|||||||||
T Consensus 143 ~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM 222 (262)
T PLN00048 143 TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAM 222 (262)
T ss_pred HHHHHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHH
Confidence 33578899999999998875 10 01256799998 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 224 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 224 lA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
+|++||++|+++||++|++||.+|++||+||||++++++
T Consensus 223 ~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 223 LAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred HHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 999999999999999999999999999999999999854
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.3e-60 Score=431.41 Aligned_cols=190 Identities=41% Similarity=0.746 Sum_probs=164.2
Q ss_pred CCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 49 PSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 49 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
.+.+++++|++|+|+ .+.|+||||++|||+||||+||++|+++++|||++|||||||||||++|+++||++++.|
T Consensus 45 ~~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g 119 (250)
T PLN00101 45 RSFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119 (250)
T ss_pred ccccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 456778899999996 789999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhc----CC------------CCCCCCCC
Q 024235 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLHP 192 (270)
Q Consensus 129 ~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~----g~------------~~~d~~~P 192 (270)
... .+.|+++|+. +|++... ..+++|+++|+++|.+|+++ |. ..+|..||
T Consensus 120 ~~~--~p~w~~ag~~-------~~~~~~~-----~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 120 IIN--APQWYDAGKA-------EYFASSS-----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred CcC--CCccccccch-------hhcccch-----HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 543 3479998853 3554332 23567889999999999864 11 01355699
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhh
Q 024235 193 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 261 (270)
Q Consensus 193 Gg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 261 (270)
||.||||||+++ +++|+||||||||||+||+||++|+++||++|++||.+|++||+||||+++|+
T Consensus 186 GG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 186 GGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999999999865 48899999999999999999999999999999999999999999999999974
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=2.8e-59 Score=422.76 Aligned_cols=191 Identities=38% Similarity=0.595 Sum_probs=164.1
Q ss_pred CCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 49 PSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 49 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
.+.-.+++|++|+|+ .+.|+||||++|||+||||+||++++++++|||++|||||||||||++|+++||++++.|
T Consensus 36 ~~~~~~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g 110 (244)
T PLN00097 36 GAVAAAADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIG 110 (244)
T ss_pred eecccCCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCC
Confidence 344566899999996 689999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhcCC-----------------CCCCCCC
Q 024235 129 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----------------DLEDKLH 191 (270)
Q Consensus 129 ~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~g~-----------------~~~d~~~ 191 (270)
... .+.||++|+.. .|+... ...+.+|+++|+++|.+|+++-. ..+|..|
T Consensus 111 ~~~--~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gY 177 (244)
T PLN00097 111 MAD--LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGY 177 (244)
T ss_pred ccc--CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCC
Confidence 632 34799998641 133321 12346788899999999986410 0124469
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHH
Q 024235 192 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 257 (270)
Q Consensus 192 PGg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~ 257 (270)
|||.||||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+|++||+|||++
T Consensus 178 Pgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 178 PKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.3e-58 Score=420.67 Aligned_cols=199 Identities=40% Similarity=0.709 Sum_probs=168.9
Q ss_pred CCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhc
Q 024235 46 KSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 125 (270)
Q Consensus 46 ~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~ 125 (270)
....+..++++|++|+|+ .+.|+||||++|||+||||+||++++++++|||++|||||||||||++|++++|+++
T Consensus 34 ~~~~~~~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~ 108 (252)
T PLN00147 34 SGGINPVVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLR 108 (252)
T ss_pred cccCcccCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhc
Confidence 334456788999999995 689999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhcC----C--------------CCC
Q 024235 126 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L--------------DLE 187 (270)
Q Consensus 126 ~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~g----~--------------~~~ 187 (270)
..|... .+.|+++|...++ +... ...+++|+++||++|.+|+.+- . ...
T Consensus 109 ~~g~~~--~p~w~~ag~~~~~------~~~~-----~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~ 175 (252)
T PLN00147 109 VTGIRN--LPVWYEAGAVKFE------FAST-----RTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGL 175 (252)
T ss_pred cCCCcC--Ccchhhcccchhc------cccc-----hHHHHHHHHHHHHHHHHhhccccCCCcccccccccccccccccc
Confidence 766533 3469988753321 1111 2345778999999999886431 0 011
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
++.||||+ ||||||.+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||++++++
T Consensus 176 ~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 176 EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 35699999 9999999999999999999999999999999999999999999999999999999999999999875
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.5e-58 Score=418.38 Aligned_cols=195 Identities=42% Similarity=0.773 Sum_probs=165.4
Q ss_pred CcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCCC
Q 024235 54 SPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 133 (270)
Q Consensus 54 ~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~p 133 (270)
..+|..|+|+ .+.|+||||++|||+||||+||++++++++|||++|||||||||||++||++||+++.
T Consensus 41 ~~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~------- 108 (243)
T PLN00099 41 VTMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL------- 108 (243)
T ss_pred ccccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-------
Confidence 3567789995 7899999999999999999999999999999999999999999999999999998752
Q ss_pred Cchhhhcccc-ccCCCcccccCCCchhH-HHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 024235 134 EAVWFKTGAL-LLDGNTLNYFGKNIPIN-LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALL 211 (270)
Q Consensus 134 ~~~W~~aG~~-~~~~~~l~~~g~~~p~~-~~~a~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~ 211 (270)
..|+++++. .+.++..+|++++.++. +..++++|+++||++|.+|+... +.++..||||.||||||.+|+++++++
T Consensus 109 -~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~~~~~yPGd~FDPlGl~kd~~~~~~~ 186 (243)
T PLN00099 109 -GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEEY 186 (243)
T ss_pred -CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCCCCcCCcccccCCHHHHHHH
Confidence 147776642 23344456777665542 34455889999999999886532 223567999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHh-hccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 212 KVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 212 k~kELkNGRLAMlA~~G~~~Q~-~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
|+|||||||||||||+||++|+ .+||++|++||.+|++||+|||+++.+..
T Consensus 187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 9999999999999999999999 57999999999999999999999998753
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3.4e-56 Score=402.49 Aligned_cols=186 Identities=33% Similarity=0.557 Sum_probs=156.5
Q ss_pred CCCCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhh
Q 024235 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123 (270)
Q Consensus 44 ~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~ 123 (270)
.+++..+.-...+|++|+|+ .+.|+||||++|||+||||+||++++++++|||++|||||||||||++|+++||+
T Consensus 22 ~~~~~~~~~~~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~ 96 (246)
T PLN00100 22 TTRRPRVRVAARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDA 96 (246)
T ss_pred cccccccccccCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHH
Confidence 34444455667799999995 7899999999999999999999999999999999999999999999999999998
Q ss_pred hccCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCC-CCCCCCC
Q 024235 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLA 202 (270)
Q Consensus 124 ~~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~-FDPLgl~ 202 (270)
++. +.|+++|... |..+ ...++++|+++||++|.+|+.+-...++..+||++ ||||||.
T Consensus 97 ~~~--------P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 97 VGL--------PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMD 156 (246)
T ss_pred hcc--------cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCccccc
Confidence 652 2588877532 2111 12345789999999999988653222344578988 9999996
Q ss_pred CChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHH
Q 024235 203 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 259 (270)
Q Consensus 203 ~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~ 259 (270)
+ +++|+||||||||||+||+||++|+++||++|++||.+|++||+|||++++
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~ 208 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccC
Confidence 3 689999999999999999999999999999999999999999999999987
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=9.3e-49 Score=355.96 Aligned_cols=176 Identities=36% Similarity=0.628 Sum_probs=143.1
Q ss_pred CCCcccccccccCc-CCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCC
Q 024235 52 MVSPDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 130 (270)
Q Consensus 52 ~~~~~r~~~lp~g~-~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~ 130 (270)
-...+|++|+|+-. -.....|+||||++|||+||||+||++|+++++|||++||+||||||||++||++||+++.
T Consensus 46 ~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g---- 121 (255)
T PLN00170 46 AAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG---- 121 (255)
T ss_pred eccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC----
Confidence 34568889998410 0113579999999999999999999999999999999999999999999999999998752
Q ss_pred CCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhcCC----------------------CCCC
Q 024235 131 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL----------------------DLED 188 (270)
Q Consensus 131 ~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~g~----------------------~~~d 188 (270)
..|+++|... .+.. +..+..++++|+++||++|.+|+++.. ..++
T Consensus 122 ----~~w~~aG~~~------~~~~---p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~ 188 (255)
T PLN00170 122 ----IPWFEAGADP------GAIA---PFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGL 188 (255)
T ss_pred ----CChhhCCccc------cccC---ccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCC
Confidence 3599998642 1111 112234457899999999999986521 0124
Q ss_pred CCCCCCC-CCCCCCCC---------ChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhh
Q 024235 189 KLHPGGP-FDPLGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 245 (270)
Q Consensus 189 ~~~PGg~-FDPLgl~~---------d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~ 245 (270)
..||||. ||||||.+ |+++++++|+||||||||||+|++||++|+ .||++|+++|.
T Consensus 189 ~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 189 QGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 5699997 99999985 789999999999999999999999999999 79999999874
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=1.8e-40 Score=281.15 Aligned_cols=147 Identities=41% Similarity=0.692 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCC--CCCchhhhccccccCCC
Q 024235 71 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 148 (270)
Q Consensus 71 ~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~--~p~~~W~~aG~~~~~~~ 148 (270)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|++++++... .....|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999986 999999999999999999999999999998765321 11123544320
Q ss_pred cccccCCCchhHHHHHHH-HHHHHHhhhhhhhhhcCCC-----CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchh
Q 024235 149 TLNYFGKNIPINLVFAVI-AEIVLVGGAEYYRITNGLD-----LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 221 (270)
Q Consensus 149 ~l~~~g~~~p~~~~~a~~-~qv~l~G~~E~~r~~~g~~-----~~d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRL 221 (270)
+ .. ...++ ..++++|.+|.++...... ..+..+||++ |||+|+.+|+++++++|++|||||||
T Consensus 74 -~-----~~----~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 74 -I-----PV----PAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp -S-----SS----HSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHH
T ss_pred -h-----hh----hhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 0 01 12233 4456789999988765311 2356899998 99999998999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024235 222 AMFAMLGFFLQAY 234 (270)
Q Consensus 222 AMlA~~G~~~Q~~ 234 (270)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=286.35 Aligned_cols=155 Identities=30% Similarity=0.392 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-ChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCC--CCCchhhhcccccc
Q 024235 69 SEIPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLL 145 (270)
Q Consensus 69 ~~~P~~l~G~~pGd~gfDPLGls~-~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~--~p~~~W~~aG~~~~ 145 (270)
...|..|+|. .||++|||+||++ ++++++|||++||||||+||||++|+++||+++.+|... ...+.|+.+.
T Consensus 44 ~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~---- 118 (209)
T PLN00089 44 AAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAH---- 118 (209)
T ss_pred ccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHH----
Confidence 3456689999 9999999999986 567899999999999999999999999999876554210 0000111110
Q ss_pred CCCcccccCCCchhHHHHH-HHHHHH-HHhhhhhhhhhcC--CCCCCCCCCCCC-CCCCCCC-CChHHHHHHHHHHHhhc
Q 024235 146 DGNTLNYFGKNIPINLVFA-VIAEIV-LVGGAEYYRITNG--LDLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNG 219 (270)
Q Consensus 146 ~~~~l~~~g~~~p~~~~~a-~~~qv~-l~G~~E~~r~~~g--~~~~d~~~PGg~-FDPLgl~-~d~e~~~~~k~kELkNG 219 (270)
+ .+... .++|++ +||++|....... ...+++++|||+ ||||||. +|+++++++|++|||||
T Consensus 119 -----~--------~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NG 185 (209)
T PLN00089 119 -----D--------ALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNG 185 (209)
T ss_pred -----H--------hhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhh
Confidence 0 00111 245776 4899995422211 112345799999 9999995 68999999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCcch
Q 024235 220 RLAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 220 RLAMlA~~G~~~Q~~vtG~gPl 241 (270)
|||||||+||++|+++||++.+
T Consensus 186 RlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 186 RLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999875
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=249.96 Aligned_cols=145 Identities=19% Similarity=0.322 Sum_probs=102.5
Q ss_pred CCCCCCCC--ChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchhHHH
Q 024235 85 YDPFGLSK--KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 162 (270)
Q Consensus 85 fDPLGls~--~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~ 162 (270)
|||+||++ ++++++|||++|||||||||||++||+++|+..+++.........+.. ..+ .+..+ -.+.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~---~p~--~~~a~-----~~vp 116 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSD---IPN--GFAAL-----DAIP 116 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccc---ccc--chhhh-----hhcc
Confidence 99999974 689999999999999999999999999999754443211100011110 000 00000 0122
Q ss_pred HHHHHHHH-HHhhhhhhhhhcCCCCCCCCCCCCC-CC--CCCCCC-ChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccC
Q 024235 163 FAVIAEIV-LVGGAEYYRITNGLDLEDKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237 (270)
Q Consensus 163 ~a~~~qv~-l~G~~E~~r~~~g~~~~d~~~PGg~-FD--PLgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 237 (270)
.+.++|++ ++|++|.++..+-. +++++|||+ ++ +|||.. |+++++++|+|||||||||||||+||++|+.++|
T Consensus 117 ~~g~~qi~~~ig~~E~~~~~~~~--~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 117 TAGLLQILAFIGFLELAVMKDIT--GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred hhHHHHHHHHHHHHHHHhhcccc--cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34577866 58999987654311 135789975 33 566654 7899999999999999999999999999999999
Q ss_pred Ccch
Q 024235 238 EGPV 241 (270)
Q Consensus 238 ~gPl 241 (270)
+.|+
T Consensus 195 ~~~~ 198 (202)
T PLN00120 195 ELPI 198 (202)
T ss_pred CCcC
Confidence 9886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.58 E-value=2e-15 Score=139.02 Aligned_cols=72 Identities=31% Similarity=0.542 Sum_probs=60.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhh-------hhhhcCCcchhHHHH
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-------AKHLSDPFANNLLTV 259 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL-------~~~ladP~~~n~~~~ 259 (270)
|+.+|||+ ||||||.+|+++++++|.+||||||+||+|++||++|+++++.++++++ .+++.+|....+++.
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~ 155 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQM 155 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHH
Confidence 56789999 9999999999999999999999999999999999999999988776633 234667765544443
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.55 E-value=4e-15 Score=135.88 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.4
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcch
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 241 (270)
|+.+|||+ ||||||.+|+++++++|++||+||||||+|++||++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 56789999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.50 E-value=1.9e-14 Score=131.60 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=49.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~g 239 (270)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 67899999 99999999999999999999999999999999999999998755
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.45 E-value=7.3e-14 Score=127.87 Aligned_cols=54 Identities=39% Similarity=0.585 Sum_probs=50.0
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcch
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 241 (270)
++.+|||+ ||||+|.+|++.++++|.+||+|||+||+|++||++|++++|...+
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 46789999 9999999999999999999999999999999999999999986433
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.44 E-value=1.1e-13 Score=126.08 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.8
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gP 240 (270)
|+..|||+ ||||||++|+++++++|.+||+|||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 56789999 999999999999999999999999999999999999999998654
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.43 E-value=1e-13 Score=130.22 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.2
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 240 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gP 240 (270)
|+..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 56789999 999999999999999999999999999999999999999876543
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.41 E-value=1.8e-13 Score=125.87 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.4
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 239 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~g 239 (270)
|+..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 45789999 99999999999999999999999999999999999999998653
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.39 E-value=1.3e-13 Score=126.76 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 76 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 76 ~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
|..+|||++|||+||++|+++++++|.+||||||+||+|++||++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 44699999999999999999999999999999999999999999999987654
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.39 E-value=2.9e-13 Score=123.31 Aligned_cols=49 Identities=37% Similarity=0.579 Sum_probs=46.6
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhcc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 236 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vt 236 (270)
|+.+|||+ ||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 56799999 99999999999999999999999999999999999999975
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.37 E-value=3.1e-13 Score=120.80 Aligned_cols=52 Identities=31% Similarity=0.535 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCCC-CChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 77 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 77 G~~pGd~gfDPLGls-~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
+..|||++|||+||. +|+++++++|.+||||||+||+|++|+++++++++.|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 478999999999994 6899999999999999999999999999999987654
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.34 E-value=4.8e-13 Score=124.25 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 76 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 76 ~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
+..+|||++|||+||++++++++++|.+||||||+||+|++||++|++++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44689999999999999999999999999999999999999999999987654
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.34 E-value=7.8e-13 Score=120.57 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=47.0
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccC
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 237 (270)
|+..|||+ ||||+|++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 66789999 999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.26 E-value=5.1e-12 Score=107.09 Aligned_cols=50 Identities=48% Similarity=0.780 Sum_probs=45.5
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCC
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 238 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~ 238 (270)
++..+|++ |||+||++++ .+.++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 34578888 9999999887 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.11 E-value=3.5e-11 Score=107.21 Aligned_cols=45 Identities=42% Similarity=0.786 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCC--CChHHHHHHHHHHHhhchhHHHHHHHHHHHhh
Q 024235 190 LHPGGPFDPLGLA--KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 234 (270)
Q Consensus 190 ~~PGg~FDPLgl~--~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~ 234 (270)
..|.|+|||+||. +|+++++++|.+||||||+||+|++||++|++
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4678889999997 47899999999999999999999999999997
No 29
>PHA02337 putative high light inducible protein
Probab=98.15 E-value=1.7e-06 Score=56.66 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHhhchhHHHHHHHHHHHhhccCCcc
Q 024235 213 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 240 (270)
Q Consensus 213 ~kELkNGRLAMlA~~G~~~Q~~vtG~gP 240 (270)
..|+-||||||+||...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4899999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.99 E-value=4.1e-06 Score=72.94 Aligned_cols=49 Identities=35% Similarity=0.406 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhhcc-CCcchhhhhhhhcCCcch
Q 024235 206 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFAN 254 (270)
Q Consensus 206 e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vt-G~gPl~nL~~~ladP~~~ 254 (270)
....+.|..|+.||||||+||+--++-+++| |+|++.|+.....-|...
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e 179 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVID 179 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchh
Confidence 4567888999999999999999999999999 999999998776655543
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.42 E-value=9.7e-05 Score=67.10 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=32.1
Q ss_pred HHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhh
Q 024235 212 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 246 (270)
Q Consensus 212 k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~ 246 (270)
...|+-|||+|||||+..++-+++||++.+.|+..
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 45999999999999999999999999999988854
No 32
>PHA02337 putative high light inducible protein
Probab=97.05 E-value=0.00027 Score=46.41 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.6
Q ss_pred HHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 101 QAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 101 reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
..+|..|||+||+|++-.+..|+++..+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999887544
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.59 E-value=0.0035 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred HHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 100 YQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 100 ~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
+.++|+.|||+||+|++-.++.|+++..|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 35789999999999999999999987654
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=90.93 E-value=0.084 Score=46.47 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHhhcchhhhhccchhhhhhhc-cCC
Q 024235 95 DDFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFG 128 (270)
Q Consensus 95 ~~~~~~reaElkHGR~AMLA~~G~l~~e~~~-~~G 128 (270)
...+..+..|+.+||+||+|++-.++.|+++ ..|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqG 164 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMG 164 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 4556667779999999999999999999988 555
No 35
>PLN02449 ferrochelatase
Probab=47.99 E-value=13 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhccCCcch
Q 024235 221 LAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 221 LAMlA~~G~~~Q~~vtG~gPl 241 (270)
+||+||+.+++-++++|+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999986
Done!