Query 024235
Match_columns 270
No_of_seqs 228 out of 1164
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.9E-64 9.8E-69 452.9 18.5 219 44-269 8-231 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 3.5E-63 1.2E-67 446.6 7.1 195 51-260 5-242 (243)
3 2wsc_3 LHCA3, type II chloroph 100.0 3.5E-58 1.2E-62 421.7 5.9 198 53-262 52-275 (276)
4 2wsc_4 Chlorophyll A-B binding 100.0 7.9E-58 2.7E-62 415.0 0.1 193 46-262 41-250 (251)
5 2wsc_2 LHCA2, type II chloroph 100.0 1.5E-57 5.2E-62 416.2 -2.0 195 48-262 55-268 (269)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1E-54 3.5E-59 392.3 6.3 192 56-261 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 1.8E-13 6.2E-18 122.8 6.2 50 188-237 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 2.5E-14 8.6E-19 129.7 -1.2 54 188-241 67-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.4 2.2E-13 7.7E-18 122.7 3.6 50 78-128 172-221 (243)
10 2wsc_2 LHCA2, type II chloroph 99.3 6.5E-14 2.2E-18 128.0 -0.6 54 188-241 78-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.3 3.4E-13 1.2E-17 123.7 1.0 53 76-128 200-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 7.5E-13 2.6E-17 119.3 -0.5 50 188-237 59-109 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.9e-64 Score=452.88 Aligned_cols=219 Identities=50% Similarity=0.885 Sum_probs=188.0
Q ss_pred CCCCCCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhh
Q 024235 44 LTKSSPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 123 (270)
Q Consensus 44 ~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~ 123 (270)
.+.++.++||+++|++|+| +++ .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+
T Consensus 8 ~~~~~~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~ 84 (232)
T 2bhw_A 8 KVASSGSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPEL 84 (232)
T ss_dssp --CCTTCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHH
Confidence 3445578999999999994 454 5899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCchhhhccccccCCCcccccCCCchh--H-HHHHHHHHHHHHhhhhhhhhhcCC--CCCCCCCCCCCCCC
Q 024235 124 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--N-LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDP 198 (270)
Q Consensus 124 ~~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~--~-~~~a~~~qv~l~G~~E~~r~~~g~--~~~d~~~PGg~FDP 198 (270)
+++.|..+. +..|+++|...++..+++|++++... + +...+++|+++||++|.+|+.++. ...|+.||||+|||
T Consensus 85 l~~~G~~~~-~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdP 163 (232)
T 2bhw_A 85 LSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDP 163 (232)
T ss_dssp HHTTTCCCS-CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCT
T ss_pred hccCCcCCc-ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCccccc
Confidence 988776543 56899999877776667888765321 2 233457899999999999987632 12466899999999
Q ss_pred CCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhcccccCCC
Q 024235 199 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 269 (270)
Q Consensus 199 Lgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~~~~~~~~ 269 (270)
|||.+|+++++++|++|||||||||+||+|+++|+++||++|++||.+|++||+|||+++++. ..+|+
T Consensus 164 lgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~---~~~~~ 231 (232)
T 2bhw_A 164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT---NFVPG 231 (232)
T ss_dssp TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT---TTCSC
T ss_pred chhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH---hhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999844 46665
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=3.5e-63 Score=446.60 Aligned_cols=195 Identities=42% Similarity=0.803 Sum_probs=136.7
Q ss_pred CCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChh-----------------------------------
Q 024235 51 GMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------------------------- 95 (270)
Q Consensus 51 ~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~----------------------------------- 95 (270)
.+++++|++|+|+ .++|+||||++|||||||||||+++||
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 4566799999996 789999999999999999999999987
Q ss_pred --------hhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHH
Q 024235 96 --------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 167 (270)
Q Consensus 96 --------~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~ 167 (270)
+++||||+|||||||||||++||++||+++. ..|+++|+..+++ .++|++++.++.+..++++
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~ 150 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWI 150 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHH
Confidence 3899999999999999999999999999852 3699998765543 3678887776666666789
Q ss_pred HHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhh
Q 024235 168 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 247 (270)
Q Consensus 168 qv~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ 247 (270)
|+++||++|.+|+++ .+.++..||||+||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+|
T Consensus 151 qv~lmG~~E~~R~~~-~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~H 229 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTH 229 (243)
T ss_dssp HHHHHHHHHHHHHSC-CCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999999999999875 2233567999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHh
Q 024235 248 LSDPFANNLLTVI 260 (270)
Q Consensus 248 ladP~~~n~~~~~ 260 (270)
++||+||||+++|
T Consensus 230 ladP~~~ni~~~~ 242 (243)
T 3pl9_A 230 LSDPLHTTILDRF 242 (243)
T ss_dssp HHCSGGGSTTTTT
T ss_pred hcCcchhhhhhhc
Confidence 9999999999875
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=3.5e-58 Score=421.75 Aligned_cols=198 Identities=43% Similarity=0.747 Sum_probs=112.7
Q ss_pred CCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhh------hHHHHHHHhhcchhhhhccchhhhhhhcc
Q 024235 53 VSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 126 (270)
Q Consensus 53 ~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~------~~~reaElkHGR~AMLA~~G~l~~e~~~~ 126 (270)
||++|++|+|+ .+.|+||||++|||+||||||| +|++++ +|+|++|||||||||||++|++++|++++
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 6899999999999999999999 678888 99999999999999999999999999988
Q ss_pred CCCCCCCC-chhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhc----CC--------------CCC
Q 024235 127 FGANCGPE-AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL--------------DLE 187 (270)
Q Consensus 127 ~G~~~~p~-~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~----g~--------------~~~ 187 (270)
.|...... ..|++++.... .+..+|++++.. .+++|+++||++|.+|+++ |. ...
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~-aG~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPP-AGTYNYWADSYT-----LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred cccccccCcchhhhhhcccc-hhHHHHhccchH-----HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 77653212 25988765332 233567766533 2467888999999998764 11 112
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
|..||||+ ||||||.+|+++++++|++|||||||||+||+|+++|+++||++|++||.+|++||||||+++++++
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 45799998 9999999988889999999999999999999999999999999999999999999999999999864
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=7.9e-58 Score=414.97 Aligned_cols=193 Identities=38% Similarity=0.733 Sum_probs=126.3
Q ss_pred CCCCCCCCCc-ccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhh
Q 024235 46 KSSPSGMVSP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 124 (270)
Q Consensus 46 ~~~~~~~~~~-~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~ 124 (270)
++....+|++ +|++|+|+ .+.|+||||++|||+|||||||++|+++++|+|++|||||||||||++|++++|++
T Consensus 41 ~~~~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~ 115 (251)
T 2wsc_4 41 CSPSASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115 (251)
T ss_dssp ---------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSS
T ss_pred ccccccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 3445679999 89999985 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhc----CC-C-----------CCC
Q 024235 125 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL-D-----------LED 188 (270)
Q Consensus 125 ~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~----g~-~-----------~~d 188 (270)
+..|... .+.|+++|.. +|++++.. .+++|+++||++|.+|+++ |. + ..+
T Consensus 116 ~~~g~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d 181 (251)
T 2wsc_4 116 TSIGIIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGE 181 (251)
T ss_dssp CCSCSSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHH
T ss_pred cCCCccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccc
Confidence 8877653 3468887642 45554422 2356888999999998764 21 0 012
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhhhhhcCCcchhHHHHhhc
Q 024235 189 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 262 (270)
Q Consensus 189 ~~~PGg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 262 (270)
..||||+||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||+++++++
T Consensus 182 ~~yPGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 182 VGYPGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp HHSSCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred ccCCCCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 368999999999975 67899999999999 9999999999999999999999999999999999999865
No 5
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.5e-57 Score=416.20 Aligned_cols=195 Identities=41% Similarity=0.784 Sum_probs=131.6
Q ss_pred CCCCCCCcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccC
Q 024235 48 SPSGMVSPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 127 (270)
Q Consensus 48 ~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~ 127 (270)
....+|+++|++|+|+ .+.|+||+|++|||+||||+||++|+++++|||++|||||||||||++|+++||++++.
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 3456899999999995 68999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhhhhhhc----CC------------CCCCCCC
Q 024235 128 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLH 191 (270)
Q Consensus 128 G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p~~~~~a~~~qv~l~G~~E~~r~~~----g~------------~~~d~~~ 191 (270)
|... .+.|+++|.. +|+..... .+++|+++||++|.+|+++ |. ..+|..|
T Consensus 130 G~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 130 GILN--TPSWYTAGEQ-------EYFTDTTT-----LFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp TSSS--CCCCCSTTSS-------SSCCCTTS-----HHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred Cccc--Cccccccchh-------hhhcchHH-----HHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 7653 3458887642 34443321 2467888999999998754 11 0124579
Q ss_pred CCCC-CCCCCCCC-ChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcchhhhh-hhhcCCcchhHHHHhhc
Q 024235 192 PGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 262 (270)
Q Consensus 192 PGg~-FDPLgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~-~~ladP~~~n~~~~~~~ 262 (270)
|||+ ||||||.+ |+++++++|.+||||||||||||+|+++|+++||++|++||. +|++|| |||+++++++
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 9999 99999985 788899999999999999999999999999999999999999 999999 9999998754
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1e-54 Score=392.29 Aligned_cols=192 Identities=43% Similarity=0.798 Sum_probs=138.3
Q ss_pred ccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCCCCCCCCc
Q 024235 56 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 135 (270)
Q Consensus 56 ~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G~~~~p~~ 135 (270)
.|..|+|+ .+.|+||+|++|||+||||+||++++++++|||++|||||||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 35679995 7899999999999999999999999999999999999999999999999999998753 1
Q ss_pred hhhhccc-cccCCCcccccCCCchhH-HHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 024235 136 VWFKTGA-LLLDGNTLNYFGKNIPIN-LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 213 (270)
Q Consensus 136 ~W~~aG~-~~~~~~~l~~~g~~~p~~-~~~a~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~k~ 213 (270)
.|++++. ..+.++..+|++.+.+++ +..++++|+++||++|.+|+.+. +.+++.||||.|||||+.+|+++++++|.
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~~~~~~yPgg~fDPlgl~~~~~~~~~~r~ 189 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKV 189 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-SSCCSSSCSCCSCSSSCSCSSSSCCCSCT
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccccccchhHHHHHHH
Confidence 3555442 123344456766655432 33445788999999999987643 23456899999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHh-hccCCcchhhhhhhhcCCcchhHHHHhh
Q 024235 214 KEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVIS 261 (270)
Q Consensus 214 kELkNGRLAMlA~~G~~~Q~-~vtG~gPl~nL~~~ladP~~~n~~~~~~ 261 (270)
+|||||||||+||+|+++|+ .+||++|++||.+|++||||||+++++.
T Consensus 190 ~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 190 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp THHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred hhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 99999999999999999999 5899999999999999999999999864
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.41 E-value=1.8e-13 Score=122.78 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=46.9
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccC
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 237 (270)
++..|||+ ||||||++|++.++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 55789999 999999999999999999999999999999999999999764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.38 E-value=2.5e-14 Score=129.68 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcch
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 241 (270)
++.+|||+ ||||||++|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 44689999 9999999999999999999999999999999999999999998766
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.36 E-value=2.2e-13 Score=122.68 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 78 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 78 ~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
.+|||+ |||+||++++++++++|.+||||||+||+|++|++++++++..|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999988654
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.34 E-value=6.5e-14 Score=128.02 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccCCcch
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 241 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl 241 (270)
++..|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 45689999 9999999999999999999999999999999999999999876544
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.29 E-value=3.4e-13 Score=123.67 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCCCCChhhhhHHHHHHHhhcchhhhhccchhhhhhhccCC
Q 024235 76 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 128 (270)
Q Consensus 76 ~G~~pGd~gfDPLGls~~~~~~~~~reaElkHGR~AMLA~~G~l~~e~~~~~G 128 (270)
|..+|||++|||+||++++++++++|++||||||+||+|++|++++|+++..|
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 45689999999999999888899999999999999999999999999987654
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.23 E-value=7.5e-13 Score=119.33 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=45.5
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhchhHHHHHHHHHHHhhccC
Q 024235 188 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 237 (270)
Q Consensus 188 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG 237 (270)
++..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 45689999 999999999999999999999999999999999999999753
Done!