Query 024236
Match_columns 270
No_of_seqs 273 out of 1155
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2.6E-74 5.6E-79 549.7 26.1 269 1-269 1-280 (408)
2 KOG2288 Galactosyltransferases 100.0 8.4E-42 1.8E-46 307.7 13.7 145 125-270 8-153 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 9.3E-33 2E-37 277.1 16.9 138 124-268 381-520 (636)
4 KOG2287 Galactosyltransferases 100.0 7.1E-31 1.5E-35 249.0 16.2 136 127-268 94-233 (349)
5 PF13334 DUF4094: Domain of un 100.0 1.2E-30 2.6E-35 205.8 6.9 85 17-102 1-94 (95)
6 PF01762 Galactosyl_T: Galacto 100.0 9E-30 1.9E-34 221.3 11.2 122 142-268 1-126 (195)
7 PTZ00210 UDP-GlcNAc-dependent 99.9 1.2E-24 2.7E-29 206.4 13.0 146 122-268 74-243 (382)
8 PF02434 Fringe: Fringe-like; 99.2 2.9E-11 6.2E-16 110.4 8.3 120 128-266 6-128 (252)
9 KOG2246 Galactosyltransferases 99.2 4.8E-11 1E-15 114.5 8.3 112 125-262 88-205 (364)
10 PLN03153 hypothetical protein; 97.8 5.3E-05 1.1E-09 75.7 7.9 115 125-262 119-247 (537)
11 KOG3708 Uncharacterized conser 93.8 0.11 2.5E-06 52.3 5.6 103 129-260 27-132 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 87.0 3.5 7.6E-05 35.2 8.0 116 130-261 3-123 (228)
13 cd04192 GT_2_like_e Subfamily 85.1 22 0.00047 29.9 12.1 87 167-260 29-118 (229)
14 PF00535 Glycos_transf_2: Glyc 83.2 20 0.00043 27.9 11.3 88 167-262 28-116 (169)
15 PRK11204 N-glycosyltransferase 81.4 36 0.00079 32.5 13.0 65 182-251 96-160 (420)
16 TIGR03472 HpnI hopanoid biosyn 79.9 57 0.0012 31.0 14.5 110 128-251 41-152 (373)
17 TIGR03469 HonB hopene-associat 79.5 49 0.0011 31.6 13.2 82 167-251 71-159 (384)
18 cd02525 Succinoglycan_BP_ExoA 78.9 40 0.00086 28.7 12.5 88 166-262 31-119 (249)
19 cd04187 DPM1_like_bac Bacteria 77.6 36 0.00079 27.9 10.3 89 166-262 29-117 (181)
20 cd06423 CESA_like CESA_like is 74.5 37 0.00081 26.2 11.1 36 216-251 69-104 (180)
21 cd04186 GT_2_like_c Subfamily 74.5 40 0.00086 26.5 10.2 28 224-251 73-100 (166)
22 cd04185 GT_2_like_b Subfamily 74.0 51 0.0011 27.4 11.2 46 213-259 68-114 (202)
23 cd04179 DPM_DPG-synthase_like 73.5 43 0.00093 27.2 9.7 88 167-262 29-117 (185)
24 cd06434 GT2_HAS Hyaluronan syn 73.3 33 0.00071 29.2 9.3 75 167-251 29-103 (235)
25 cd04188 DPG_synthase DPG_synth 65.7 82 0.0018 26.6 10.2 89 166-262 30-120 (211)
26 COG4092 Predicted glycosyltran 63.6 31 0.00066 32.8 7.3 81 163-248 35-117 (346)
27 PRK05454 glucosyltransferase M 60.7 1.5E+02 0.0033 31.4 12.6 135 125-266 121-259 (691)
28 cd06442 DPM1_like DPM1_like re 60.4 98 0.0021 26.0 9.6 38 224-261 77-115 (224)
29 cd02510 pp-GalNAc-T pp-GalNAc- 57.3 1.5E+02 0.0032 26.8 11.3 35 217-251 75-109 (299)
30 TIGR01556 rhamnosyltran L-rham 57.1 80 0.0017 28.2 8.8 56 193-250 43-98 (281)
31 cd06421 CESA_CelA_like CESA_Ce 56.5 1.2E+02 0.0026 25.5 12.1 38 217-254 76-113 (234)
32 cd04195 GT2_AmsE_like GT2_AmsE 55.8 1.2E+02 0.0025 25.1 11.4 75 181-261 42-118 (201)
33 PRK14583 hmsR N-glycosyltransf 54.6 2.1E+02 0.0047 27.8 15.2 106 128-250 75-180 (444)
34 PF13506 Glyco_transf_21: Glyc 53.8 41 0.00088 28.8 6.1 42 210-251 16-57 (175)
35 cd02526 GT2_RfbF_like RfbF is 51.7 1.4E+02 0.003 25.4 9.1 52 194-247 46-97 (237)
36 cd06427 CESA_like_2 CESA_like_ 49.3 1.8E+02 0.0038 25.2 12.6 36 216-251 75-110 (241)
37 PF03452 Anp1: Anp1; InterPro 47.9 1.4E+02 0.003 28.0 9.0 96 165-261 55-181 (269)
38 cd06439 CESA_like_1 CESA_like_ 45.8 2E+02 0.0042 24.8 14.5 108 127-251 28-135 (251)
39 TIGR03111 glyc2_xrt_Gpos1 puta 45.2 3E+02 0.0066 26.8 14.0 40 216-255 122-161 (439)
40 PF10111 Glyco_tranf_2_2: Glyc 44.4 2.4E+02 0.0053 25.5 10.9 77 165-248 33-111 (281)
41 PRK10714 undecaprenyl phosphat 43.9 2.1E+02 0.0045 26.9 9.7 88 166-261 38-126 (325)
42 cd06438 EpsO_like EpsO protein 43.9 1.8E+02 0.004 23.9 12.3 48 215-262 70-118 (183)
43 cd04191 Glucan_BSP_ModH Glucan 42.7 2.6E+02 0.0056 25.3 10.5 113 132-251 3-121 (254)
44 PF06305 DUF1049: Protein of u 42.3 32 0.0007 24.5 3.1 18 20-37 19-36 (68)
45 cd02520 Glucosylceramide_synth 41.6 2.1E+02 0.0045 23.9 13.7 80 166-250 30-111 (196)
46 cd06913 beta3GnTL1_like Beta 1 41.4 2.2E+02 0.0047 24.1 11.5 43 218-260 77-119 (219)
47 cd06435 CESA_NdvC_like NdvC_li 40.9 2.3E+02 0.0049 24.1 10.7 36 216-251 73-110 (236)
48 cd02514 GT13_GLCNAC-TI GT13_GL 40.4 48 0.001 31.9 4.8 44 215-258 87-133 (334)
49 cd06420 GT2_Chondriotin_Pol_N 40.4 57 0.0012 26.4 4.8 35 217-251 71-105 (182)
50 smart00786 SHR3_chaperone ER m 39.9 22 0.00048 31.8 2.3 29 17-45 6-40 (196)
51 cd04184 GT2_RfbC_Mx_like Myxoc 39.4 2.1E+02 0.0046 23.4 13.0 34 217-250 75-108 (202)
52 cd06433 GT_2_WfgS_like WfgS an 38.8 72 0.0016 25.8 5.1 46 216-261 66-113 (202)
53 PF08229 SHR3_chaperone: ER me 38.7 15 0.00033 32.8 1.1 32 17-48 6-43 (196)
54 PF06072 Herpes_US9: Alphaherp 38.3 30 0.00064 25.3 2.3 17 21-37 42-58 (60)
55 PF04666 Glyco_transf_54: N-Ac 36.1 1.9E+02 0.0042 27.3 8.1 132 125-259 49-206 (297)
56 PF06306 CgtA: Beta-1,4-N-acet 34.3 1.4E+02 0.0031 29.0 6.8 67 183-249 127-199 (347)
57 COG1215 Glycosyltransferases, 33.4 4.1E+02 0.009 25.0 11.8 113 128-255 54-167 (439)
58 cd02522 GT_2_like_a GT_2_like_ 30.2 1E+02 0.0023 25.7 4.9 36 218-253 65-100 (221)
59 PF03742 PetN: PetN ; InterPr 28.3 59 0.0013 20.5 2.1 23 16-38 4-26 (29)
60 PF13704 Glyco_tranf_2_4: Glyc 28.3 2.5E+02 0.0054 20.8 7.5 48 194-242 40-88 (97)
61 PF09964 DUF2198: Uncharacteri 28.1 37 0.0008 25.9 1.5 22 18-39 46-67 (74)
62 PF11772 EpuA: DNA-directed RN 27.1 53 0.0012 22.8 2.0 16 21-36 4-19 (47)
63 cd00761 Glyco_tranf_GTA_type G 26.7 2.7E+02 0.0058 20.6 9.3 33 217-249 69-101 (156)
64 PLN03181 glycosyltransferase; 26.2 4.3E+02 0.0092 26.7 8.8 92 144-238 108-211 (453)
65 PF09258 Glyco_transf_64: Glyc 26.1 80 0.0017 28.8 3.6 38 224-261 74-111 (247)
66 cd04196 GT_2_like_d Subfamily 25.4 3.8E+02 0.0082 21.9 12.7 87 166-260 27-116 (214)
67 PLN02726 dolichyl-phosphate be 25.4 4.5E+02 0.0097 22.8 13.3 88 166-261 40-130 (243)
68 PF03490 Varsurf_PPLC: Variant 23.2 51 0.0011 23.3 1.4 27 149-178 9-35 (51)
69 cd04190 Chitin_synth_C C-termi 22.5 1.2E+02 0.0027 26.6 4.1 33 223-255 71-103 (244)
70 PF04846 Herpes_pp38: Herpesvi 22.1 64 0.0014 23.8 1.7 21 16-36 15-35 (63)
71 PHA03289 envelope glycoprotein 21.3 1.9E+02 0.0041 28.1 5.1 68 21-96 275-352 (352)
72 PF03071 GNT-I: GNT-I family; 20.6 3.7E+02 0.008 27.0 7.2 44 215-258 177-227 (434)
73 PF13712 Glyco_tranf_2_5: Glyc 20.4 1E+02 0.0023 27.3 3.2 30 215-244 44-73 (217)
74 PF04508 Pox_A_type_inc: Viral 20.2 84 0.0018 18.7 1.6 18 84-101 4-21 (23)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.6e-74 Score=549.74 Aligned_cols=269 Identities=64% Similarity=1.040 Sum_probs=243.9
Q ss_pred CCccccCCCcccCCCcchhHHHHHHHHHHHhHhhhcccCCCCCccchhhhcccc--------ccCcchhh---hhccccc
Q 024236 1 MSFKSTGGEFASRNLIPRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT--------EEIENPEL---KAVKHES 69 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~ 69 (270)
||.|+||+++++++.||+||+++||++|||+|++||||||..||+++..+++.+ .+||++|+ |..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 899999999999999999999999999999999999999999998887765442 27899876 5556799
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCccCCCCCCCCCeeEEEEEECCCCCHHHHHHHHH
Q 024236 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRA 149 (270)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~k~i~~lemela~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvI~I~Sap~~~~rR~aIR~ 149 (270)
+|||+||++||+|||+|||+|++||||||+|++.+..+.++.|.+++....+...+++++|||+|+|+|++++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977767776665443333344567889999999999999999999999
Q ss_pred hhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEE
Q 024236 150 TWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFY 229 (270)
Q Consensus 150 TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~ 229 (270)
|||+.++.+.+++.+.+|+++||||+++++++.++++|++|+++|||||++||+|+|+|||.||+++|+||.++|+++||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998877777777889999999999987667899999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEeHHHHHHHHhccCCCCceEEEEeeccccccC
Q 024236 230 IKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLAR 269 (270)
Q Consensus 230 lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~sgPV~~~ 269 (270)
+|+|||+|||+++|+.+|+.++.++++|+|||+++||+.+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~ 280 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQ 280 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccC
Confidence 9999999999999999999988888999999999999865
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-42 Score=307.72 Aligned_cols=145 Identities=67% Similarity=1.075 Sum_probs=140.3
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEee-cc
Q 024236 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 203 (270)
Q Consensus 125 ~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld-~~ 203 (270)
++++++||+|.|+|++.+||+++|+|||+.++.+++++++++|.++||||+ ++.++.++++|++|+++|+|+|++| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 678999999999999999999999999999999999999999999999999 4457899999999999999999999 99
Q ss_pred ccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEeeccccccCC
Q 024236 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARK 270 (270)
Q Consensus 204 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~sgPV~~~k 270 (270)
|+|++|+.||+.+|.||+.+|+++||+|+|||+|||++.|...|++++.+|++|||||++|||+++|
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~ 153 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQP 153 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999883
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.3e-33 Score=277.10 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=124.6
Q ss_pred CCCCeeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeecc
Q 024236 124 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 203 (270)
Q Consensus 124 ~~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~ 203 (270)
++++++|||+|+|+|+|++||++||+|||+... ..+..++++|++|.+.+ +.++..|++|+++|||||++||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999998642 12456999999999864 57899999999999999999999
Q ss_pred ccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee--cccccc
Q 024236 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK--SGPVLA 268 (270)
Q Consensus 204 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~--sgPV~~ 268 (270)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+.+|......+++|+|++. +.|+|.
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd 520 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccC
Confidence 99999999999999999999999999999999999999999999887777789999998 567774
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=249.02 Aligned_cols=136 Identities=25% Similarity=0.404 Sum_probs=123.9
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 024236 127 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (270)
Q Consensus 127 ~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY 206 (270)
.++++++|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .+++.+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 2356799999999998644 6689999999999999999999999
Q ss_pred ccccHHHHHHHHHHHh-CCCccEEEEeCCceEEeHHHHHHHHhcc-CCCCceEEEEee--cccccc
Q 024236 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK--SGPVLA 268 (270)
Q Consensus 207 ~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~~lY~G~~~--sgPV~~ 268 (270)
+|||+|+++++.|+.. |++++|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. +.|+|.
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~ 233 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRD 233 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCC
Confidence 9999999999999986 7899999999999999999999999999 889999999998 356654
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.96 E-value=1.2e-30 Score=205.79 Aligned_cols=85 Identities=42% Similarity=0.736 Sum_probs=74.7
Q ss_pred chhHHHHHHHHHHHhHhhhcccCCCCCccchhhhccc---------cccCcchhhhhcccccchhhHHHHHHHHHHHHHH
Q 024236 17 PRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISK---------TEEIENPELKAVKHESNNNTEKLAMVEQAIQSQD 87 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 87 (270)
|+||+++||+||||+|+|||||||..||+++...... ..+||++++ ..+.+++++|+||+|||+|||+||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~Ld 79 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLD 79 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999887764322 127999765 335689999999999999999999
Q ss_pred Hhhhhhhhhhhhhhh
Q 024236 88 KRLDGLKTKITAVRA 102 (270)
Q Consensus 88 k~i~~lemela~~~~ 102 (270)
|+||+||||||+||+
T Consensus 80 KtIS~LEMELAaARa 94 (95)
T PF13334_consen 80 KTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999997
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.96 E-value=9e-30 Score=221.33 Aligned_cols=122 Identities=33% Similarity=0.509 Sum_probs=104.9
Q ss_pred HHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHH
Q 024236 142 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 221 (270)
Q Consensus 142 ~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~ 221 (270)
+||++||+||++... ....+++++||+|.+.+.+..++..|.+|+++|+|||++||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999753 235789999999999865677888899999999999999999999999999999999998
Q ss_pred hC-CCccEEEEeCCceEEeHHHHHHHHhcc--C-CCCceEEEEeecccccc
Q 024236 222 SM-WDAEFYIKVDDDVHVNLATLGMTLAAH--R-TKPRVYVGCMKSGPVLA 268 (270)
Q Consensus 222 ~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~--~-~~~~lY~G~~~sgPV~~ 268 (270)
++ ++++|++|+|||+|||+++|..+|... . ....+|.|++..+|+.+
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r 126 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIR 126 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCcccc
Confidence 65 569999999999999999999999998 2 34556667777555443
No 7
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.92 E-value=1.2e-24 Score=206.38 Aligned_cols=146 Identities=17% Similarity=0.277 Sum_probs=123.4
Q ss_pred CCCCCCeeEEEEEECCCCC--HHHHHHHHHhhcCCcccchhhhc-CCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEE
Q 024236 122 SMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEKRKMLEE-AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFL 198 (270)
Q Consensus 122 ~~~~~~~~lvI~I~Sap~~--~~rR~aIR~TW~~~~~~l~kLe~-~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL 198 (270)
....++.++++||.|..++ +.||++.|+||.+.....++-++ ...+.++|++|.+++.+-.++.++.+|+++|||||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4557889999999999998 89999999999987653322222 23477999999999877789999999999999999
Q ss_pred Eeec------------------cccCccccHHHHHHHHHHHh-CCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEE
Q 024236 199 RLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG 259 (270)
Q Consensus 199 ~ld~------------------~DsY~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G 259 (270)
++|| .|+|.++|.||+++|+||.. |++++|++|+|||+|||++.++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 67778899999999999986 5799999999999999999999999765 56669999
Q ss_pred Eee--cccccc
Q 024236 260 CMK--SGPVLA 268 (270)
Q Consensus 260 ~~~--sgPV~~ 268 (270)
.+. ..|.+.
T Consensus 233 ~v~~~~~p~Rd 243 (382)
T PTZ00210 233 RYNYYNRIWRR 243 (382)
T ss_pred eeCCCCccccC
Confidence 887 345553
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.22 E-value=2.9e-11 Score=110.36 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=66.0
Q ss_pred eeEEEEEECCCCCHH-HHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 024236 128 YFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (270)
Q Consensus 128 ~~lvI~I~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY 206 (270)
-.++|+|+|++.+.+ |-.+|.+||++.... +.|+..... +..+..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc------ccccccc--cccccccCCCcchh
Confidence 358999999998665 559999999997631 234322211 2333333 23355555555555
Q ss_pred ccccHHHHHHHHHHHh-CCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee-cccc
Q 024236 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPV 266 (270)
Q Consensus 207 ~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~-sgPV 266 (270)
....++.++.+.+... ..+++||+++|||+||++++|..+|..+++.+++|+|+.. .+|.
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~ 128 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPI 128 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccc
Confidence 4445555555555332 3688999999999999999999999999999999999876 4443
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.19 E-value=4.8e-11 Score=114.46 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=91.7
Q ss_pred CCCeeEEEEEECCCCCHHHH-HHHHHhhcCCcccchhhhcCCCeEEEEEe---ecCCCCCCchHHHHHHHHhhcCCEEEe
Q 024236 125 KRKYFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFLRL 200 (270)
Q Consensus 125 ~~~~~lvI~I~Sap~~~~rR-~aIR~TW~~~~~~l~kLe~~~~i~v~FVi---G~s~~~~~~ld~~I~~E~~~y~DIL~l 200 (270)
.++..+++.|.|++.+..-| +.+-+||++.++ +..|+- ..... .+. .|..
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-----------~~~f~s~~~s~~~~--------------~f~-~v~~ 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-----------KGIFFSPTLSKDDS--------------RFP-TVYY 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC-----------cceecCccCCCCCC--------------cCc-eeec
Confidence 56789999999999877655 799999999874 134443 22211 111 3467
Q ss_pred eccccCccccHHHHHHHHHHHhC--CCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee
Q 024236 201 EHIEGYLELSAKTKTYFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK 262 (270)
Q Consensus 201 d~~DsY~nLt~Ktl~~f~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~ 262 (270)
+..|+|+++..||..+|++...+ .+++||+|+|||+|+.++||..+|..++|.+.+|+|+..
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~ 205 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS 205 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc
Confidence 88999999999999999999743 799999999999999999999999999999999999965
No 10
>PLN03153 hypothetical protein; Provisional
Probab=97.82 E-value=5.3e-05 Score=75.69 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCeeEEEEEECCCCCH-HHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCC--CCchHHHHHHHHhhcCCEEEee
Q 024236 125 KRKYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS--GGILDKAIDAEEKMHGDFLRLE 201 (270)
Q Consensus 125 ~~~~~lvI~I~Sap~~~-~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~--~~~ld~~I~~E~~~y~DIL~ld 201 (270)
..--.++++|.++.... +|+..|+.+|.+... . ..+|+.....+. +..+- - +.+.
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~~~~~~~P-----------~-i~is 176 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPEEGDDSLP-----------P-IMVS 176 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCCCCcCCCC-----------C-EEeC
Confidence 34456899999888876 566999999997421 1 134443332110 00000 0 1110
Q ss_pred cccc----Ccc---ccHH--HHHHHHHHHh--CCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee
Q 024236 202 HIEG----YLE---LSAK--TKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK 262 (270)
Q Consensus 202 ~~Ds----Y~n---Lt~K--tl~~f~wa~~--~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~ 262 (270)
.|+ |.| .... +.-+...+.. .++++||+++|||+|+.+++|+.+|..+++++..|+|...
T Consensus 177 -~d~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~S 247 (537)
T PLN03153 177 -EDTSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPS 247 (537)
T ss_pred -CCcccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccc
Confidence 111 222 2221 1112333322 5899999999999999999999999999999999999543
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.11 Score=52.28 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=68.4
Q ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCcc
Q 024236 129 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLE 208 (270)
Q Consensus 129 ~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~n 208 (270)
.|+++|+|. ..---+|-.|-+..- -++.|+++.+.-. +|.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhv-----------prv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHV-----------PRVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhc-----------ceeEEeecccccc---------------ccHhhccccCcccc
Confidence 345666662 144456666665432 2577888776431 13333344555555
Q ss_pred ccHHHHHH-HHHHHhC--CCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEE
Q 024236 209 LSAKTKTY-FATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 260 (270)
Q Consensus 209 Lt~Ktl~~-f~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 260 (270)
-..|+..+ +.+..++ -++||++-+-|++|||...|+.++........+|+|-
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 55565543 4555443 6899999999999999999999999988889999983
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=87.05 E-value=3.5 Score=35.24 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=55.1
Q ss_pred EEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCE--EEeeccccCc
Q 024236 130 MVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGYL 207 (270)
Q Consensus 130 lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DI--L~ld~~DsY~ 207 (270)
+.|+|.+.-....-++.++.--... . ..+.++++...+. +.....+++-.+.|... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~--------~-~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD--------Y-PRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH--------H-HTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC--------C-CCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 4555665544444455555544321 1 2355666664433 23334455555566543 222221 2
Q ss_pred ccc--HHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc-CCCCceEEEEe
Q 024236 208 ELS--AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCM 261 (270)
Q Consensus 208 nLt--~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~~lY~G~~ 261 (270)
|.- .|.- .+.++....+.+|++.+|||+.+..+.|..++... .+.-.+..|.+
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 221 2332 34555555679999999999999999998888876 34444444443
No 13
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.08 E-value=22 Score=29.92 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=49.6
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhc--CCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHH
Q 024236 167 IIIRFVIGHSATSGGILDKAIDAEEKMH--GDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y--~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (270)
+.++.|-..+. +.....+. +...+ ..+..++..+. .+. .|. ..+.++......+|++.+|+|..+..+.|.
T Consensus 29 ~eiivvdd~s~---d~t~~~~~-~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST---DGTVQILE-FAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC---cChHHHHH-HHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 55666655443 22333344 23233 34555554432 232 222 334555556688999999999999988888
Q ss_pred HHHhccC-CCCceEEEE
Q 024236 245 MTLAAHR-TKPRVYVGC 260 (270)
Q Consensus 245 ~~L~~~~-~~~~lY~G~ 260 (270)
..+.... +...++.|.
T Consensus 102 ~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 102 TFVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHHHhhcCCCcEEeee
Confidence 8887543 333344443
No 14
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=83.16 E-value=20 Score=27.93 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=47.7
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHH
Q 024236 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (270)
+.+++|-..+. +.....+++-.+....+..+...+.. .+..-. ..+.+....+|++.+|||.++..+.|..+
T Consensus 28 ~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~----n~~~~~a~~~~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 28 FEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAAR----NRGIKHAKGEYILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp EEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHH----HHHHHH--SSEEEEEETTEEE-TTHHHHH
T ss_pred EEEEEeccccc---cccccccccccccccccccccccccc-cccccc----cccccccceeEEEEeCCCceEcHHHHHHH
Confidence 55655554442 23444444443334556666655544 333323 33333345569999999999999877777
Q ss_pred HhccCC-CCceEEEEee
Q 024236 247 LAAHRT-KPRVYVGCMK 262 (270)
Q Consensus 247 L~~~~~-~~~lY~G~~~ 262 (270)
+..... ...+.+|...
T Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 100 VEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHCTTEEEEEEEE
T ss_pred HHHHHhCCCcEEEEEEE
Confidence 776543 4445555544
No 15
>PRK11204 N-glycosyltransferase; Provisional
Probab=81.36 E-value=36 Score=32.48 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=43.7
Q ss_pred chHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 182 ILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 182 ~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.....+++..++|..+...+..+ |. .|. .++..+.+..+.+|++..|+|..+..+.|...++...
T Consensus 96 ~t~~~l~~~~~~~~~v~~i~~~~---n~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 96 NTGEILDRLAAQIPRLRVIHLAE---NQ-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred cHHHHHHHHHHhCCcEEEEEcCC---CC-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 34455555566666666555433 32 233 3455666667899999999999999998888887653
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=79.87 E-value=57 Score=31.03 Aligned_cols=110 Identities=9% Similarity=-0.014 Sum_probs=60.9
Q ss_pred eeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCC--EEEeecccc
Q 024236 128 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEG 205 (270)
Q Consensus 128 ~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~D--IL~ld~~Ds 205 (270)
+.+-|+|.+.-....-.+.++ +...+. -..+.++|+...+. +.....+++=.+.|.+ +..+. ...
T Consensus 41 p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~-~~~ 107 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVI-DAR 107 (373)
T ss_pred CCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEE-CCC
Confidence 445666665544443445554 233221 12367777765543 2222333333456665 32221 111
Q ss_pred CccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 206 YLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 206 Y~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
-.....|.-...+ +.+..+.+|++.+|+|+.+..+.|...+....
T Consensus 108 ~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 108 RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 1223356655443 34456889999999999999999988887753
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=79.47 E-value=49 Score=31.62 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=45.8
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcC---CEEEeeccccCccccHHHH---HHHHHHHh-CCCccEEEEeCCceEEe
Q 024236 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHVN 239 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~---DIL~ld~~DsY~nLt~Ktl---~~f~wa~~-~~~a~F~lKvDDDvfVn 239 (270)
+.+++|-..|.+ + ....+++-.++|. .+..+...+.-.+-..|.. .+++.|.. ..+.+|++.+|+|+.+.
T Consensus 71 ~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~ 147 (384)
T TIGR03469 71 LHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHG 147 (384)
T ss_pred eEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCC
Confidence 567766655542 2 2222332233343 3444443222222234533 34555543 23489999999999999
Q ss_pred HHHHHHHHhccC
Q 024236 240 LATLGMTLAAHR 251 (270)
Q Consensus 240 l~~L~~~L~~~~ 251 (270)
.+.|...++...
T Consensus 148 p~~l~~lv~~~~ 159 (384)
T TIGR03469 148 PDNLARLVARAR 159 (384)
T ss_pred hhHHHHHHHHHH
Confidence 988888877643
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=78.92 E-value=40 Score=28.71 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=49.7
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (270)
.+.++.|-+.+. +.....++...+++..+....-.+. ... .++..+.+....+|++.+|||..+..+.|..
T Consensus 31 ~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~ 101 (249)
T cd02525 31 LIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYILE 101 (249)
T ss_pred ccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHHH
Confidence 456666655543 2334444444444433444432211 111 3455555555889999999999999888888
Q ss_pred HHhccCC-CCceEEEEee
Q 024236 246 TLAAHRT-KPRVYVGCMK 262 (270)
Q Consensus 246 ~L~~~~~-~~~lY~G~~~ 262 (270)
.++.... ...+..|+..
T Consensus 102 ~~~~~~~~~~~~v~~~~~ 119 (249)
T cd02525 102 LVEALKRTGADNVGGPME 119 (249)
T ss_pred HHHHHhcCCCCEEeccee
Confidence 8865433 3334445543
No 19
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=77.60 E-value=36 Score=27.86 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=53.9
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (270)
.+.++.|-+.+. + .....++...+++..+..+.+...+. + -.++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~--d-~t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--D-RTLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--c-cHHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 356666655443 2 23334555555666666666544331 1 13334444445669999999999999888888
Q ss_pred HHhccCCCCceEEEEee
Q 024236 246 TLAAHRTKPRVYVGCMK 262 (270)
Q Consensus 246 ~L~~~~~~~~lY~G~~~ 262 (270)
.+....+...+..|...
T Consensus 101 l~~~~~~~~~~v~g~~~ 117 (181)
T cd04187 101 MLAKWEEGYDVVYGVRK 117 (181)
T ss_pred HHHHHhCCCcEEEEEec
Confidence 88765555566666554
No 20
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=74.55 E-value=37 Score=26.20 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=27.0
Q ss_pred HHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.+.++.+..+.+|++.+|+|..+..+.|..++....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 104 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFF 104 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhc
Confidence 344555556899999999999998887777745543
No 21
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.53 E-value=40 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 224 WDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.+.+|++..|||..+..+.+..++....
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHH
Confidence 4889999999999999998888887543
No 22
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.97 E-value=51 Score=27.45 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC-CCCceEEE
Q 024236 213 TKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVG 259 (270)
Q Consensus 213 tl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~~lY~G 259 (270)
.-.++.++. ..+.+|++..|||..+..+.|...+.... +...++.|
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 114 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAP 114 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecc
Confidence 345566666 56889999999999999888777766553 33334443
No 23
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=73.46 E-value=43 Score=27.18 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=53.2
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHH
Q 024236 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (270)
+.++.+-..+. +.....++....++..+..+...+... . -.++..+.+....+|++..|+|..+..+.|..+
T Consensus 29 ~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-~----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-K----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-c----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 44555544433 234455655566666665555554432 1 133444444445599999999999999988888
Q ss_pred Hhc-cCCCCceEEEEee
Q 024236 247 LAA-HRTKPRVYVGCMK 262 (270)
Q Consensus 247 L~~-~~~~~~lY~G~~~ 262 (270)
+.. ......+..|...
T Consensus 101 ~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 101 LEKLLEGGADVVIGSRF 117 (185)
T ss_pred HHHHhccCCcEEEEEee
Confidence 886 4444556556543
No 24
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.29 E-value=33 Score=29.22 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=45.2
Q ss_pred eEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHH
Q 024236 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (270)
Q Consensus 167 i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (270)
..+++|...+. +.....+ .+...+..+.... .+. ..|.. .+..+....+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45666655443 2223223 3455566665554 221 12332 2333334458899999999999999999888
Q ss_pred HhccC
Q 024236 247 LAAHR 251 (270)
Q Consensus 247 L~~~~ 251 (270)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 88775
No 25
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=65.72 E-value=82 Score=26.56 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=52.7
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCCE-EEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DI-L~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (270)
.+.++.|-+.+. +.....+++..+.++.. ..+...... ... .++..+.+....+|++.+|+|..+.++.+.
T Consensus 30 ~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 466666655554 23344555555666654 233333222 112 223333333456999999999999999998
Q ss_pred HHHhc-cCCCCceEEEEee
Q 024236 245 MTLAA-HRTKPRVYVGCMK 262 (270)
Q Consensus 245 ~~L~~-~~~~~~lY~G~~~ 262 (270)
.++.. ......+.+|...
T Consensus 102 ~l~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 102 KLEEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHHHhccCCcEEEEEee
Confidence 88887 3445566777554
No 26
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=63.64 E-value=31 Score=32.84 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=60.8
Q ss_pred cCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeecc--ccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeH
Q 024236 163 EAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (270)
Q Consensus 163 ~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~--DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl 240 (270)
...++-++|+=|.+ ..++.|..=.....-++.+++. +.+...+.--..+..|+.+.++..+++..|-|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 34567777776664 4567777776666777888764 4454444555567788888899999999999999999
Q ss_pred HHHHHHHh
Q 024236 241 ATLGMTLA 248 (270)
Q Consensus 241 ~~L~~~L~ 248 (270)
++..+.|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999884
No 27
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=60.70 E-value=1.5e+02 Score=31.36 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=73.2
Q ss_pred CCCeeEEEEEECCCCCHHH-HHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCch--HHHHHHHHhhcCCEEEee
Q 024236 125 KRKYFMVIGINTAFSSRKR-RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHGDFLRLE 201 (270)
Q Consensus 125 ~~~~~lvI~I~Sap~~~~r-R~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~l--d~~I~~E~~~y~DIL~ld 201 (270)
.....+.|+|.+.-...++ +..|+.++.+-.. ......+.+ ||+..+.+++... ...+.+=.++|++-..+-
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 4456677777777765543 4677777754211 001123555 8887665321110 111222234443211111
Q ss_pred ccccCccccHHHHHHHHHHHhC-CCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEeecccc
Q 024236 202 HIEGYLELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPV 266 (270)
Q Consensus 202 ~~DsY~nLt~Ktl~~f~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~sgPV 266 (270)
+...-.|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|..++......|+ +|.+...|.
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~ 259 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPV 259 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCcc
Confidence 2222334445666544444332 47799999999999999999999986543343 355554443
No 28
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=60.36 E-value=98 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.9
Q ss_pred CCccEEEEeCCceEEeHHHHHHHHhc-cCCCCceEEEEe
Q 024236 224 WDAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCM 261 (270)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~-~~~~~~lY~G~~ 261 (270)
...+|++.+|+|..+.++.|..++.. ..+...+.+|..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 34599999999999999988888886 445556665643
No 29
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=57.35 E-value=1.5e+02 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
...+......+|++..|+|+.+..+-|..++....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 33444445789999999999999888877777643
No 30
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=57.07 E-value=80 Score=28.20 Aligned_cols=56 Identities=7% Similarity=-0.013 Sum_probs=35.4
Q ss_pred hcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc
Q 024236 193 MHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (270)
Q Consensus 193 ~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (270)
.+..|..+...++. ....=.-.++++|.+ .+++|++..|||+.+..+.|...+...
T Consensus 43 ~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 43 RGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred cCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 34556555543322 112222235677654 378999999999999988877777654
No 31
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=56.53 E-value=1.2e+02 Score=25.51 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCC
Q 024236 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP 254 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~ 254 (270)
+..+.+..+.+|++.+|+|+++..+.|..++......+
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 113 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDP 113 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCC
Confidence 34444555889999999999999998888888764433
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=55.80 E-value=1.2e+02 Score=25.08 Aligned_cols=75 Identities=7% Similarity=0.017 Sum_probs=43.9
Q ss_pred CchHHHHHHHHhhcCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC--CCCceEE
Q 024236 181 GILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYV 258 (270)
Q Consensus 181 ~~ld~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~--~~~~lY~ 258 (270)
+.....+++-.+.+. +..+...++. -+ -.++..+....+.+|++..|+|.++..+.|...+.... +.-.++.
T Consensus 42 d~t~~~~~~~~~~~~-i~~i~~~~n~----G~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~ 115 (201)
T cd04195 42 QSLNEVLEEFKRKLP-LKVVPLEKNR----GL-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVG 115 (201)
T ss_pred hhHHHHHHHHHhcCC-eEEEEcCccc----cH-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEc
Confidence 344444444445555 5444443321 11 12344455556889999999999999988888777643 2333444
Q ss_pred EEe
Q 024236 259 GCM 261 (270)
Q Consensus 259 G~~ 261 (270)
|.+
T Consensus 116 ~~~ 118 (201)
T cd04195 116 GGV 118 (201)
T ss_pred ccE
Confidence 544
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=54.63 E-value=2.1e+02 Score=27.82 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred eeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccCc
Q 024236 128 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYL 207 (270)
Q Consensus 128 ~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY~ 207 (270)
+.+-|+|.+.-+...-++.|+.- ..+. -..+.+++|-..+. +...+.+++..++|..+.......
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH--- 139 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---
Confidence 45666666665443333444321 1111 12455555544432 234445555556666554444322
Q ss_pred cccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc
Q 024236 208 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (270)
Q Consensus 208 nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (270)
|. .|. .+++.+....+.+|++..|+|..+..+.|...++..
T Consensus 140 n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~ 180 (444)
T PRK14583 140 NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPL 180 (444)
T ss_pred CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHH
Confidence 22 232 345666666789999999999999999988887765
No 34
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=53.82 E-value=41 Score=28.77 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 210 SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 210 t~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
..|+-...........+++++-.|+|+.|+.+.|...+....
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~ 57 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLA 57 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHh
Confidence 356655554433236889999999999999999999888764
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=51.66 E-value=1.4e+02 Score=25.37 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=33.7
Q ss_pred cCCEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHH
Q 024236 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 247 (270)
Q Consensus 194 y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (270)
...+..+...++. ....=.-.++++|... +++|++..|||+.+..+.|..++
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 3455555443332 1233333456665543 78999999999999988888885
No 36
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=49.35 E-value=1.8e+02 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.+.++.+....+|++.+|+|+.+..+.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 445555556789999999999999999998888754
No 37
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=47.92 E-value=1.4e+02 Score=28.01 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=58.8
Q ss_pred CCeEEEEEeecCCCCCCchHHHHHHHH----------hhcCCEEEe--eccccC------------ccccHHHHHHHH-H
Q 024236 165 KGIIIRFVIGHSATSGGILDKAIDAEE----------KMHGDFLRL--EHIEGY------------LELSAKTKTYFA-T 219 (270)
Q Consensus 165 ~~i~v~FViG~s~~~~~~ld~~I~~E~----------~~y~DIL~l--d~~DsY------------~nLt~Ktl~~f~-w 219 (270)
..|.+-|+++.+.. ++...+.++++. ..|+.|.++ ||.+.- ...-++.++-.+ |
T Consensus 55 ~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 35889999999873 234444455443 345666555 454321 111222222111 3
Q ss_pred HHh---CCCccEEEEeCCceEEeHHHHHHHHhccCC---CCceEEEEe
Q 024236 220 AVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRT---KPRVYVGCM 261 (270)
Q Consensus 220 a~~---~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~---~~~lY~G~~ 261 (270)
+.. .+..+|++-.|-|+.-.++.|++.|..++. -|++|.++.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~~ 181 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRYY 181 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeeccc
Confidence 221 268999999999999999999999998763 356665543
No 38
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=45.79 E-value=2e+02 Score=24.77 Aligned_cols=108 Identities=11% Similarity=-0.008 Sum_probs=56.1
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 024236 127 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (270)
Q Consensus 127 ~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY 206 (270)
.+.+-|+|.+.-....-...++.-..... ....+.++++...+. +.....+.+..+. .+......+..
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~---d~t~~~~~~~~~~--~v~~i~~~~~~ 95 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST---DGTAEIAREYADK--GVKLLRFPERR 95 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC---ccHHHHHHHHhhC--cEEEEEcCCCC
Confidence 34566666665544444555655554321 011245555554332 2223333322222 24333332221
Q ss_pred ccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 207 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 207 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.|. ..+..+......+|++.+|+|+.+..+.|...+....
T Consensus 96 ----g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 96 ----GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred ----ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 232 2334444445669999999999999887888777754
No 39
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=45.19 E-value=3e+02 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCc
Q 024236 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (270)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~ 255 (270)
++.++.+..+.+|++..|+|..+..+.|...+......+.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 4556666678899999999999999999888876543333
No 40
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=44.45 E-value=2.4e+02 Score=25.52 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeec--cccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHH
Q 024236 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEH--IEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLAT 242 (270)
Q Consensus 165 ~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~--~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~ 242 (270)
..+.+++|=+.+. ...+..|.+-.+.++-+..+.. ...+.+.+. +..-++.....+|++..|.|+++..+.
T Consensus 33 ~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 33 PDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 4566666655543 2344667666666665522222 221223222 223344445889999999999999999
Q ss_pred HHHHHh
Q 024236 243 LGMTLA 248 (270)
Q Consensus 243 L~~~L~ 248 (270)
+...+.
T Consensus 106 i~~~~~ 111 (281)
T PF10111_consen 106 IEKLLN 111 (281)
T ss_pred HHHHHH
Confidence 999988
No 41
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=43.94 E-value=2.1e+02 Score=26.87 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=50.5
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCC-EEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~D-IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (270)
.+.+++|-..|.+ . ....+++-.+.+++ ++...+..++. ...=...++ .+.+.+|++-.|+|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D--~-T~~il~~~~~~~~~~v~~i~~~~n~G-~~~A~~~G~----~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD--N-SAEMLVEAAQAPDSHIVAILLNRNYG-QHSAIMAGF----SHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC--c-HHHHHHHHHhhcCCcEEEEEeCCCCC-HHHHHHHHH----HhCCCCEEEEECCCCCCCHHHHH
Confidence 4678888766542 2 22333333344444 44444444331 112122333 34478999999999999999988
Q ss_pred HHHhccCCCCceEEEEe
Q 024236 245 MTLAAHRTKPRVYVGCM 261 (270)
Q Consensus 245 ~~L~~~~~~~~lY~G~~ 261 (270)
.+++.......+..|+.
T Consensus 110 ~l~~~~~~~~DvV~~~r 126 (325)
T PRK10714 110 RLVAKADEGYDVVGTVR 126 (325)
T ss_pred HHHHHHHhhCCEEEEEE
Confidence 88887643334544543
No 42
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=43.86 E-value=1.8e+02 Score=23.88 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=35.5
Q ss_pred HHHHHHHh-CCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEee
Q 024236 215 TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK 262 (270)
Q Consensus 215 ~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~ 262 (270)
.++.++.. ..+.+|++.+|.|+.+.++.|..++......+.+..|+..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~ 118 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN 118 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe
Confidence 34555532 2468999999999999998888888877555566677654
No 43
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=42.74 E-value=2.6e+02 Score=25.33 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=57.6
Q ss_pred EEEECCCCCHH-HHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHH----hhcCCEEEeeccccC
Q 024236 132 IGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEE----KMHGDFLRLEHIEGY 206 (270)
Q Consensus 132 I~I~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~----~~y~DIL~ld~~DsY 206 (270)
|+|.+.-.... -.+.++..+.... .......+.+ ||+..+.+ +.......++. +.+..-+.+-+....
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~----~~~~~~~~eI-~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~ 75 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLA----KTGLADHFDF-FILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYRRRR 75 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH----hcCCcCceEE-EEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEEEcC
Confidence 45566555554 4566666553110 0000124566 88855432 22211111111 223332333333333
Q ss_pred ccccHHHHHHHHHHHhC-CCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 207 LELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 207 ~nLt~Ktl~~f~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
.|.-.|+-..-...... .+.+|++-.|-|+.+..+.|...+....
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~ 121 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRME 121 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34444544433332222 5789999999999999999999888753
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.30 E-value=32 Score=24.46 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHhhhcc
Q 024236 20 WALFLCACSFCAGMSFTN 37 (270)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (270)
+..++.++||++|++++.
T Consensus 19 pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGW 36 (68)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777788888888765
No 45
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=41.64 E-value=2.1e+02 Score=23.89 Aligned_cols=80 Identities=14% Similarity=0.007 Sum_probs=47.0
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcC--CEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~--DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (270)
.+.+++|...+.. .....+++-.+.|. ++......... ....|.- .+..+......+|++..|+|+.+..+.|
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3677777766642 23334544445554 33233221111 1223433 2344555567899999999999998888
Q ss_pred HHHHhcc
Q 024236 244 GMTLAAH 250 (270)
Q Consensus 244 ~~~L~~~ 250 (270)
...+...
T Consensus 105 ~~l~~~~ 111 (196)
T cd02520 105 RRMVAPL 111 (196)
T ss_pred HHHHHHh
Confidence 8877764
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=41.39 E-value=2.2e+02 Score=24.06 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEE
Q 024236 218 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 260 (270)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 260 (270)
..+.+....+|++.+|+|..+..+.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444556789999999999999988877665543333344554
No 47
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=40.94 E-value=2.3e+02 Score=24.11 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=28.2
Q ss_pred HHHHHHhC--CCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 216 YFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 216 ~f~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
++.++... .+++|++..|+|+.+..+.|...+....
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 45555543 3579999999999999999999887754
No 48
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=40.41 E-value=48 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCccEEEEeCCceEEeHH---HHHHHHhccCCCCceEE
Q 024236 215 TYFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYV 258 (270)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~---~L~~~L~~~~~~~~lY~ 258 (270)
.++.|+.+..++++++-++||..+.++ -+.+.|..+...+++++
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ 133 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC 133 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE
Confidence 366666655689999999999999998 55666666655666654
No 49
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=40.36 E-value=57 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccC
Q 024236 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR 251 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (270)
+..+.+....+|++..|+|..+..+-|...++...
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 34445556789999999999999888888887763
No 50
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.92 E-value=22 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHhHhhhcc------cCCCCCcc
Q 024236 17 PRKWALFLCACSFCAGMSFTN------RMWMMPES 45 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------r~w~~~~~ 45 (270)
+-...+++|-.||+.|++|++ =||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 334578999999999999998 46877654
No 51
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=39.37 E-value=2.1e+02 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc
Q 024236 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 250 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (270)
+.++......+|++..|+|..+..+.|...++..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 4444445577999999999999998888888765
No 52
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.78 E-value=72 Score=25.80 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhcc--CCCCceEEEEe
Q 024236 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH--RTKPRVYVGCM 261 (270)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~--~~~~~lY~G~~ 261 (270)
.+..+....+.+|++..|+|..+..+.+...+... .+...+..|..
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 113 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDV 113 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeee
Confidence 34555555678999999999999999888887433 23445555544
No 53
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=38.68 E-value=15 Score=32.79 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHhHhhhcc------cCCCCCccchh
Q 024236 17 PRKWALFLCACSFCAGMSFTN------RMWMMPESKGV 48 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------r~w~~~~~~~~ 48 (270)
|=...+++|-.||+.|++|++ =||+.+.+.+.
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~~~ 43 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTDEA 43 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCCHHH
Confidence 344568999999999999998 46887665333
No 54
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=38.31 E-value=30 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHhhhcc
Q 024236 21 ALFLCACSFCAGMSFTN 37 (270)
Q Consensus 21 ~~~~~~~~~~~~~~~~~ 37 (270)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46889999999998763
No 55
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=36.07 E-value=1.9e+02 Score=27.32 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=61.2
Q ss_pred CCCeeEEEEEECCCCCHHHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCC-CCCchHHHHHHHHhhc---CCEEEe
Q 024236 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSAT-SGGILDKAIDAEEKMH---GDFLRL 200 (270)
Q Consensus 125 ~~~~~lvI~I~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~-~~~~ld~~I~~E~~~y---~DIL~l 200 (270)
+++..++|||.|-... +-..+..|=++--+.+..-| ...+.|+-+++.+.. ....+...|..+-..| |=+..+
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~E-r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEE-RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHH-hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 3445599999997632 23455555554322222222 334555555555432 1122233343322222 333333
Q ss_pred eccccCcc-c--------------cHHHHHHHHHH--Hh-C-CCccEEEEeCCceEEeHHH---HHHHHhccCCCCceEE
Q 024236 201 EHIEGYLE-L--------------SAKTKTYFATA--VS-M-WDAEFYIKVDDDVHVNLAT---LGMTLAAHRTKPRVYV 258 (270)
Q Consensus 201 d~~DsY~n-L--------------t~Ktl~~f~wa--~~-~-~~a~F~lKvDDDvfVnl~~---L~~~L~~~~~~~~lY~ 258 (270)
.-..+|+. + ...++.-+.|+ .. | ..++||+-..|||.....= +...+......+=+|+
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W~~L 205 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDWLYL 205 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhcCCCceEE
Confidence 32222221 1 11222222222 11 1 4678999999999987753 3444444433443444
Q ss_pred E
Q 024236 259 G 259 (270)
Q Consensus 259 G 259 (270)
-
T Consensus 206 e 206 (297)
T PF04666_consen 206 E 206 (297)
T ss_pred E
Confidence 3
No 56
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=34.25 E-value=1.4e+02 Score=28.97 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhcCCEEEeecc--ccC---ccccHHHHHHHHHHHhC-CCccEEEEeCCceEEeHHHHHHHHhc
Q 024236 183 LDKAIDAEEKMHGDFLRLEHI--EGY---LELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAA 249 (270)
Q Consensus 183 ld~~I~~E~~~y~DIL~ld~~--DsY---~nLt~Ktl~~f~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (270)
..+-|.+=.++|-+++.+-+. --. .....+...++.|+... +..+|++|+|.|-..+...|....-.
T Consensus 127 t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 127 TEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 355577778899998877432 111 11223556677888776 78999999999999999998775543
No 57
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.40 E-value=4.1e+02 Score=24.96 Aligned_cols=113 Identities=8% Similarity=-0.033 Sum_probs=70.0
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHhhcCCcccchhhhcCCCeEEEEEeecCCCCCCchHHHHHHHHhhcCCEEEeeccccC
Q 024236 128 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (270)
Q Consensus 128 ~~lvI~I~Sap~~~-~rR~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~~~~~~ld~~I~~E~~~y~DIL~ld~~DsY 206 (270)
+.+-|.|.+.-... --.+.++..-... -..+.+..|...+. +..-+.+++-..++++.+...+. -
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--c
Confidence 56677777776655 3444444443332 12356777776443 34555666666677644444422 0
Q ss_pred ccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCCCc
Q 024236 207 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (270)
Q Consensus 207 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~ 255 (270)
.+. ..-...+.++....+.++++..|-|+.+..+.|.+.+......+.
T Consensus 120 ~~~-~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 120 KKN-GGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred ccC-ccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 111 222345667766667999999999999999999999998754443
No 58
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.21 E-value=1e+02 Score=25.72 Aligned_cols=36 Identities=6% Similarity=0.078 Sum_probs=26.5
Q ss_pred HHHHhCCCccEEEEeCCceEEeHHHHHHHHhccCCC
Q 024236 218 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK 253 (270)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~ 253 (270)
..+......+|++.+|+|.++..+.|...+......
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 334444568999999999999988888876655433
No 59
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=28.33 E-value=59 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHHhHhhhccc
Q 024236 16 IPRKWALFLCACSFCAGMSFTNR 38 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (270)
++--|+.++.+|+|-..+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999998887
No 60
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=28.25 E-value=2.5e+02 Score=20.76 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=30.3
Q ss_pred cCCEEEeeccccCccccHHHHHHHHHHH-hCCCccEEEEeCCceEEeHHH
Q 024236 194 HGDFLRLEHIEGYLELSAKTKTYFATAV-SMWDAEFYIKVDDDVHVNLAT 242 (270)
Q Consensus 194 y~DIL~ld~~DsY~nLt~Ktl~~f~wa~-~~~~a~F~lKvDDDvfVnl~~ 242 (270)
+.++-...+...|..-... ........ ...+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4556666666666543333 22333333 336899999999998887764
No 61
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=28.11 E-value=37 Score=25.87 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhHhhhcccC
Q 024236 18 RKWALFLCACSFCAGMSFTNRM 39 (270)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~r~ 39 (270)
.-|++++-++|..||.+++.+|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4478999999999999999886
No 62
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=27.12 E-value=53 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHhhhc
Q 024236 21 ALFLCACSFCAGMSFT 36 (270)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (270)
+++||+++|.+|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6889999999998764
No 63
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=26.71 E-value=2.7e+02 Score=20.61 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHhCCCccEEEEeCCceEEeHHHHHHHHhc
Q 024236 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA 249 (270)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (270)
+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 334444447999999999999999888886444
No 64
>PLN03181 glycosyltransferase; Provisional
Probab=26.25 E-value=4.3e+02 Score=26.71 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCcccchhhhcCCCeEEEEEeecCC----CC-CCc-hHHHH---HHHHhhcC-CEEEee-ccc-cCccccH
Q 024236 144 RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSA----TS-GGI-LDKAI---DAEEKMHG-DFLRLE-HIE-GYLELSA 211 (270)
Q Consensus 144 R~aIR~TW~~~~~~l~kLe~~~~i~v~FViG~s~----~~-~~~-ld~~I---~~E~~~y~-DIL~ld-~~D-sY~nLt~ 211 (270)
=|.-|+.|...-. ....+..-+|+.|.|..+ +. ++. +.+.+ .+=+++|| ++...+ ..+ .|..-..
T Consensus 108 wD~kR~~Wl~~~p---~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHP---SFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 4566777875321 111223345666666552 11 222 22222 23456777 555444 223 5555667
Q ss_pred HHHHHHHHHHhCCCccEEEEeCCceEE
Q 024236 212 KTKTYFATAVSMWDAEFYIKVDDDVHV 238 (270)
Q Consensus 212 Ktl~~f~wa~~~~~a~F~lKvDDDvfV 238 (270)
|+...-.-...+|+++|+.-+|-|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 776665555678999999999999766
No 65
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=26.05 E-value=80 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCccEEEEeCCceEEeHHHHHHHHhccCCCCceEEEEe
Q 024236 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCM 261 (270)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~ 261 (270)
-..+-++-+|||+.++.+.|.-.+...+..|.-.+|+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 35688999999999999999888887665555566654
No 66
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.43 E-value=3.8e+02 Score=21.93 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=48.1
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcC-CEEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (270)
.+.+++|-..+. + .....+++-...|. .+.......+. .... .+..+......+|++..|+|..+..+.|.
T Consensus 27 ~~eiiVvddgS~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--D-GTVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--C-CcHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466776655443 2 23333444444453 33333333322 2222 22333445688999999999999988888
Q ss_pred HHHhc-c-CCCCceEEEE
Q 024236 245 MTLAA-H-RTKPRVYVGC 260 (270)
Q Consensus 245 ~~L~~-~-~~~~~lY~G~ 260 (270)
..+.. . .+...++.|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHHHHHhcCCCceEEecC
Confidence 88876 2 2333444443
No 67
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=25.43 E-value=4.5e+02 Score=22.78 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=49.6
Q ss_pred CeEEEEEeecCCCCCCchHHHHHHHHhhcCC--EEEeeccccCccccHHHHHHHHHHHhCCCccEEEEeCCceEEeHHHH
Q 024236 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (270)
Q Consensus 166 ~i~v~FViG~s~~~~~~ld~~I~~E~~~y~D--IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (270)
.+.+++|-..|.+ .....+.+-.++|++ +......... ... .++..+......+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 4667777655542 233334444445653 3333332221 111 23344444456899999999999999888
Q ss_pred HHHHhccC-CCCceEEEEe
Q 024236 244 GMTLAAHR-TKPRVYVGCM 261 (270)
Q Consensus 244 ~~~L~~~~-~~~~lY~G~~ 261 (270)
..++.... +...+.+|..
T Consensus 112 ~~l~~~~~~~~~~~v~g~r 130 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTR 130 (243)
T ss_pred HHHHHHHHhcCCcEEEEcc
Confidence 88877643 3445666643
No 68
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=23.22 E-value=51 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=20.0
Q ss_pred HhhcCCcccchhhhcCCCeEEEEEeecCCC
Q 024236 149 ATWMPQGEKRKMLEEAKGIIIRFVIGHSAT 178 (270)
Q Consensus 149 ~TW~~~~~~l~kLe~~~~i~v~FViG~s~~ 178 (270)
++||++. +....+..|.-+|++|....
T Consensus 9 qSWM~DL---rS~I~~~~I~ql~ipGsHns 35 (51)
T PF03490_consen 9 QSWMSDL---RSSIGEMAITQLFIPGSHNS 35 (51)
T ss_pred HHHHHHH---HHHHhcceeeeEEecccccc
Confidence 6898873 33445778999999998753
No 69
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.54 E-value=1.2e+02 Score=26.58 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCCccEEEEeCCceEEeHHHHHHHHhccCCCCc
Q 024236 223 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR 255 (270)
Q Consensus 223 ~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~ 255 (270)
..+.+|++.+|.|+.+..+.|...+......|+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~ 103 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPE 103 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCC
Confidence 358899999999999999998888876533343
No 70
>PF04846 Herpes_pp38: Herpesvirus pp38 phosphoprotein; InterPro: IPR006930 Members of this family contain a conserved region found in most herpesvirus pp38 phosphoproteins.
Probab=22.11 E-value=64 Score=23.81 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHHHhHhhhc
Q 024236 16 IPRKWALFLCACSFCAGMSFT 36 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~ 36 (270)
+|.|..++=.-.||+||+|+-
T Consensus 15 ~S~k~lv~Gscm~f~aG~LiG 35 (63)
T PF04846_consen 15 FSAKSLVLGSCMSFFAGTLIG 35 (63)
T ss_pred eecchhhHHHHHHHHHHHhcc
Confidence 467777777778999999873
No 71
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.27 E-value=1.9e+02 Score=28.09 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHhhhcc------cCCCCCccc--hhhhccc-cc-cCcchhhhhcccccchhhHHHHHHHHHHHHHHHhh
Q 024236 21 ALFLCACSFCAGMSFTN------RMWMMPESK--GVARISK-TE-EIENPELKAVKHESNNNTEKLAMVEQAIQSQDKRL 90 (270)
Q Consensus 21 ~~~~~~~~~~~~~~~~~------r~w~~~~~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~k~i 90 (270)
.++||+.+.+.+....- |+..-.|+. ..++... .+ -+|++..| ..|+||.+ -+-...|+|++
T Consensus 275 ~~~~~~~~l~i~~~~~~~~s~~~~iy~g~~~s~~~~~~~~~~~~~f~~~~~~~---~~ps~i~~-----~e~~e~~~k~~ 346 (352)
T PHA03289 275 YLVLCIIALLIVTVCSACKSPRRRIYIGNEPSDLTSLINSAVNEKFGCNPETK---NVPSDISE-----AELLERLEKKI 346 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceecCCCCcccchhhhhhhhhhhcCCcccc---cCcccccH-----HHHHHHHHHHh
Confidence 46777777776654432 222211111 1122222 11 48987653 46788732 34456789999
Q ss_pred hhhhhh
Q 024236 91 DGLKTK 96 (270)
Q Consensus 91 ~~leme 96 (270)
..||.|
T Consensus 347 ~~~~~~ 352 (352)
T PHA03289 347 EMLETE 352 (352)
T ss_pred hhhhcC
Confidence 999875
No 72
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=20.58 E-value=3.7e+02 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHH----hCCCccEEEEeCCceEEeHHHHHHHHhcc---CCCCceEE
Q 024236 215 TYFATAV----SMWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYV 258 (270)
Q Consensus 215 ~~f~wa~----~~~~a~F~lKvDDDvfVnl~~L~~~L~~~---~~~~~lY~ 258 (270)
.=++||. ...+++.++-+.||.-+-+|=+-=+...+ ...+.+|+
T Consensus 177 ~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~c 227 (434)
T PF03071_consen 177 RHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWC 227 (434)
T ss_dssp HHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEE
Confidence 3445654 33578899999999999776543333322 13455665
No 73
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=20.41 E-value=1e+02 Score=27.31 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccEEEEeCCceEEeHHHHH
Q 024236 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (270)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (270)
.++..+.+..+++|++.++||+++.-.+.+
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l 73 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWL 73 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHH
Confidence 356777777899999999999999744433
No 74
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.23 E-value=84 Score=18.74 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=12.8
Q ss_pred HHHHHhhhhhhhhhhhhh
Q 024236 84 QSQDKRLDGLKTKITAVR 101 (270)
Q Consensus 84 ~~~~k~i~~lemela~~~ 101 (270)
..+..+|+.||-+|+..+
T Consensus 4 ~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456777888888887554
Done!