BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024237
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
 pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
          Length = 341

 Score =  313 bits (801), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 145/234 (61%), Positives = 183/234 (78%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EV
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247


>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex
 pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
           Component Of Human Pyruvate Dehydrogenase Complex With
           The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
           Be Modeled Into The Electron Density
          Length = 329

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 145/234 (61%), Positives = 183/234 (78%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 2   QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 62  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EV
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 235


>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
 pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
          Length = 341

 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/234 (60%), Positives = 178/234 (76%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N   DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXG 73

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EF TFNFS QAID +INSAAK+ Y S G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGAS 133

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EV
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247


>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
           Thermophilus Hb8 In Apo-form
 pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
           Thermophilus Hb8 In Apo-form
 pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 In Holo-Form
 pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 In Holo-Form
 pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methylpentanoate
 pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methylpentanoate
 pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
           Intermediate
 pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
           Intermediate
          Length = 324

 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/233 (45%), Positives = 150/233 (64%), Gaps = 3/233 (1%)

Query: 37  MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96
           M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA  
Sbjct: 4   MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63

Query: 97  TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
            G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G   
Sbjct: 64  VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123

Query: 157 GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV 216
             G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     V
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRS---V 180

Query: 217 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
             EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV
Sbjct: 181 KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233


>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
           To The Peripheral Subunit Binding Domain Of E2
 pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
           To The Peripheral Subunit Binding Domain Of E2
 pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
           To The Peripheral Subunit Binding Domain Of E2
 pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
           To The Peripheral Subunit Binding Domain Of E2
 pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
           E183q) Bound To The Peripheral Subunit Binding Domain Of
           E2
 pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
           E183q) Bound To The Peripheral Subunit Binding Domain Of
           E2
 pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
           E183q) Bound To The Peripheral Subunit Binding Domain Of
           E2
 pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
           E183q) Bound To The Peripheral Subunit Binding Domain Of
           E2
          Length = 324

 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 139/234 (59%), Gaps = 3/234 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 2   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 62  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 179

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV
Sbjct: 180 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEV 232


>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
          Length = 325

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 139/234 (59%), Gaps = 3/234 (1%)

Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G
Sbjct: 3   QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62

Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
             G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G  
Sbjct: 63  IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 122

Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
                 HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF 
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 180

Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV
Sbjct: 181 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEV 233


>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
           Dehydrogenase From The Archeon Pyrobaculum Aerophilum
          Length = 369

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 3/218 (1%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +A+N AL EEM  D +V ++GE+VG+  G + +++GL E++GPERV+DTP+ E G  G  
Sbjct: 55  KAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFA 114

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           +G A  GLKPV E    +F     D ++N  AK  Y S G    P+V R P G+    G 
Sbjct: 115 MGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL 174

Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEV 220
            HS+   A +   PGL V+ P +  +A+GLLKAAIR  DPVVFLE ++LY        EV
Sbjct: 175 YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAP---REEV 231

Query: 221 LDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAE 258
            +  + + IGKA++ REG DVT+  +  +V  +L+AAE
Sbjct: 232 PEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE 269


>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
 pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
           Dehydrogenase (E1)
          Length = 339

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 16/250 (6%)

Query: 33  AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
           A   M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+
Sbjct: 2   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 61

Query: 93  EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
           E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P 
Sbjct: 62  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 121

Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
           G     G  HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY  
Sbjct: 122 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 181

Query: 213 SF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
            F      PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE 
Sbjct: 182 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 240

Query: 260 LAKEGISAEV 269
             + G+ AEV
Sbjct: 241 --ESGVDAEV 248


>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
           Dehydrogenase (Branched-Chain Alpha-Keto Acid
           Dehydrogenase, E1b)
          Length = 338

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 16/242 (6%)

Query: 41  EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
           +AL SA D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+E+G  G  
Sbjct: 9   QALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68

Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
           VG   YGL+PVVE    ++   A D I++  A+  Y S+G+   P+  R P G     G 
Sbjct: 69  VGXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQ 128

Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------ 214
            HS    A +  V GL+ + P +  DA+GLL A+I   DPV+FLE + LY   F      
Sbjct: 129 THSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDR 188

Query: 215 PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISA 267
           PV+       + V D  + +P+ KA I R G DV++  +   V ++  AAE   + G+ A
Sbjct: 189 PVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDA 245

Query: 268 EV 269
           EV
Sbjct: 246 EV 247


>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
 pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
           Acylation Reaction Catalyzed By Human Branched-Chain
           Alpha-Ketoacid Dehydrogenase
 pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
           Acylation Reaction Catalyzed By Human Branched-Chain
           Alpha-Ketoacid Dehydrogenase
 pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
           Loop Conformation In The Bckd Machine
 pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
           Loop Conformation In The Bckd Machine
 pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
           Loop Conformation In The Bckd Machine
 pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
           Loop Conformation In The Bckd Machine
 pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-Chain Alpha- Ketoacid Dehydrogenase
 pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-Chain Alpha- Ketoacid Dehydrogenase
 pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-Chain Alpha- Ketoacid Dehydrogenase
 pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-chain Alpha- Ketoacid Dehydrogenase
 pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-Chain Alpha- Ketoacid Dehydrogenase
 pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
           Branched-chain Alpha- Ketoacid Dehydrogenase
 pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
 pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
           Ketoacid Dehydrogenase By An Internal Molecular Switch
          Length = 342

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 9/245 (3%)

Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70

Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130

Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190

Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246

Query: 265 ISAEV 269
           +S EV
Sbjct: 247 VSCEV 251


>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
           Decarboxylase E1b
 pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
           Decarboxylase E1b
          Length = 350

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 9/245 (3%)

Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70

Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130

Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G        HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190

Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246

Query: 265 ISAEV 269
           +S EV
Sbjct: 247 VSCEV 251


>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
           Acylation Reaction Catalyzed By Human Branched-chain
           Alpha-ketoacid Dehydrogenase
          Length = 342

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 9/245 (3%)

Query: 28  RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
           R Y    ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV 
Sbjct: 13  REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70

Query: 88  DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
           +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +
Sbjct: 71  NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130

Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
             R P G         S    A++A  PG+KV+ P S   A+GLL + I D +P +F E 
Sbjct: 131 TIRSPWGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190

Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
           ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246

Query: 265 ISAEV 269
           +S EV
Sbjct: 247 VSCEV 251


>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
          Length = 629

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 26/228 (11%)

Query: 42  ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101
           A   A+ E    DP+ F++   + E  G  + S+       P R LD  I E        
Sbjct: 327 AFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSR-----VHPHRYLDVGIAEEVAVTTAA 381

Query: 102 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161
           G A  G++PVV   +  F  +A D +++  A  +      ++  I   G  GA    GA 
Sbjct: 382 GMALQGMRPVVAIYS-TFLQRAYDQVLHDVAIEHL----NVTFCIDRAGIVGAD---GAT 433

Query: 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV--SA 218
           H+  +  ++  S+PG+++  P  + + RG+LK A     P         +   +P   +A
Sbjct: 434 HNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP---------FAIRYPRGNTA 484

Query: 219 EVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGI 265
           +V   ++  L  G+ +  + G DV I A  K +  +LKAAE L   G+
Sbjct: 485 QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVGV 532


>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
           Escherichia Coli
 pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
           Escherichia Coli
 pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
           Escherichia Coli
 pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
           Escherichia Coli
          Length = 621

 Score = 36.6 bits (83), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 22/183 (12%)

Query: 83  PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
           P+R  D  I E        G A  G KP+V   +  F  +A D +++  A          
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYS-TFLQRAYDQVLHDVAIQK------- 411

Query: 143 SVPIVFRGPNGAAAGVGAQ-HSHCYAAWY-ASVPGLKVLSPYSSEDARGLLKAAIR---D 197
            +P++F        G   Q H   +   Y   +P   + +P    + R  L         
Sbjct: 412 -LPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDG 470

Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
           P  V +     +  E  P+          LPIGK  ++R G+ + I  F  +   + K A
Sbjct: 471 PSAVRYPRGNAVGVELTPLEK--------LPIGKGIVKRRGEKLAILNFGTLXPEAAKVA 522

Query: 258 EIL 260
           E L
Sbjct: 523 ESL 525


>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
 pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
          Length = 616

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 346 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 404

Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N    G    V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 405 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 456

Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 457 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 509

Query: 253 -SLKAAEILAKEGISAEV 269
            +L AAE+L KE I+  V
Sbjct: 510 EALAAAELLKKEKINIRV 527


>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
          Length = 616

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 77  LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
           + +K  P+R ++  I E     I VG A    + V    TF  F  +A D I  +A ++S
Sbjct: 348 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 406

Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
           N    G    V I   GP        +Q +    A + SVP   V  P         ++ 
Sbjct: 407 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 458

Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
           A  +   + F+        S P +A + +++    +G+AK+  + KD  +T     V L 
Sbjct: 459 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 511

Query: 253 -SLKAAEILAKEGISAEV 269
            +L AAE+L KE I+  V
Sbjct: 512 EALAAAELLKKEKINIRV 529


>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
 pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
           Mycobacterium Marinum In Complex With An Unknown Ligand
          Length = 272

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 174 PGLKVLSPYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPV--SAEVLDSSFCLPIG 230
           PGL  + P    D   +     RDPD  VV +  E   G++F    S E++D +     G
Sbjct: 32  PGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGE---GKAFSSGGSFELIDETIGDYEG 88

Query: 231 KAKIEREGKDVTIT 244
           + +I RE +D+ + 
Sbjct: 89  RIRIMREARDLVLN 102


>pdb|3VSR|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase
 pdb|3VSS|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase Complexed
           With Fructose
          Length = 496

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 202 VFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261
           +F  +   Y  S   + +  D    L +GK K  ++G  VT+T F+K+  L L+A     
Sbjct: 177 LFFTDVAFYRNSDGTNIKPYDPRIALSVGKVKANKKG--VTLTGFNKVTDL-LQADGTYY 233

Query: 262 KEGISAE 268
           + G   E
Sbjct: 234 QTGAQNE 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,823,667
Number of Sequences: 62578
Number of extensions: 324210
Number of successful extensions: 1074
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 20
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)