Query 024237
Match_columns 270
No_of_seqs 131 out of 1053
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02683 pyruvate dehydrogenas 100.0 1.4E-60 3E-65 444.4 27.9 253 17-269 6-259 (356)
2 CHL00144 odpB pyruvate dehydro 100.0 8.9E-61 1.9E-65 441.5 26.4 230 35-269 2-232 (327)
3 PRK09212 pyruvate dehydrogenas 100.0 7.2E-60 1.6E-64 435.7 26.7 232 34-269 1-232 (327)
4 COG0022 AcoB Pyruvate/2-oxoglu 100.0 7.3E-60 1.6E-64 420.1 23.6 231 36-269 1-231 (324)
5 PRK11892 pyruvate dehydrogenas 100.0 5.3E-58 1.1E-62 438.8 26.5 232 34-269 139-371 (464)
6 PTZ00182 3-methyl-2-oxobutanat 100.0 2.6E-57 5.7E-62 422.2 26.2 233 34-269 32-264 (355)
7 COG3958 Transketolase, C-termi 100.0 5E-57 1.1E-61 399.4 23.0 215 35-269 5-223 (312)
8 KOG0524 Pyruvate dehydrogenase 100.0 7.5E-52 1.6E-56 361.7 18.6 235 35-269 33-267 (359)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.9E-50 4E-55 398.8 26.3 216 36-269 380-598 (701)
10 PLN02234 1-deoxy-D-xylulose-5- 100.0 5.7E-49 1.2E-53 387.3 26.3 215 36-269 356-575 (641)
11 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.2E-48 2.6E-53 374.0 25.3 216 35-269 314-532 (627)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 2.7E-48 5.9E-53 385.3 27.1 215 36-269 355-574 (677)
13 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2.6E-48 5.6E-53 384.8 26.4 215 36-269 309-526 (617)
14 PRK12571 1-deoxy-D-xylulose-5- 100.0 3.4E-47 7.3E-52 378.1 26.0 215 36-269 318-535 (641)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.2E-47 7E-52 374.9 25.1 213 36-269 277-492 (581)
16 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 7.9E-46 1.7E-50 311.7 17.4 166 41-207 1-167 (167)
17 PRK05444 1-deoxy-D-xylulose-5- 100.0 4.1E-45 8.9E-50 360.5 23.6 205 37-261 279-486 (580)
18 KOG0525 Branched chain alpha-k 100.0 5.9E-45 1.3E-49 314.7 13.6 231 35-269 39-271 (362)
19 PTZ00089 transketolase; Provis 100.0 5E-43 1.1E-47 349.5 24.4 220 30-269 348-578 (661)
20 PRK12753 transketolase; Review 100.0 9.5E-43 2.1E-47 347.2 24.8 216 34-269 352-580 (663)
21 PRK05899 transketolase; Review 100.0 9.8E-43 2.1E-47 346.3 24.6 211 35-269 317-541 (624)
22 TIGR00232 tktlase_bact transke 100.0 1.3E-42 2.7E-47 346.2 24.7 221 29-269 341-571 (653)
23 PRK12754 transketolase; Review 100.0 3.3E-42 7.1E-47 342.1 24.6 215 35-269 353-580 (663)
24 KOG0523 Transketolase [Carbohy 100.0 1.9E-42 4.1E-47 329.9 18.7 227 17-269 302-536 (632)
25 PLN02790 transketolase 100.0 3.2E-41 7E-46 336.2 24.9 223 28-269 335-571 (654)
26 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.5E-39 3.3E-44 270.8 17.6 153 41-207 1-156 (156)
27 PRK09405 aceE pyruvate dehydro 100.0 7.6E-37 1.6E-41 308.2 25.0 220 35-269 493-759 (891)
28 PF02779 Transket_pyr: Transke 100.0 2.2E-37 4.7E-42 263.0 14.4 166 35-211 1-176 (178)
29 TIGR03186 AKGDH_not_PDH alpha- 100.0 4.8E-36 1E-40 302.3 23.7 221 34-269 487-756 (889)
30 PRK13012 2-oxoacid dehydrogena 100.0 2E-35 4.4E-40 298.7 22.9 220 34-269 500-764 (896)
31 smart00861 Transket_pyr Transk 100.0 6.8E-33 1.5E-37 232.9 17.2 155 38-207 1-166 (168)
32 COG0021 TktA Transketolase [Ca 100.0 1.1E-31 2.4E-36 258.8 20.5 222 29-269 346-579 (663)
33 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5.7E-31 1.2E-35 267.0 19.8 225 36-269 585-841 (929)
34 PRK09404 sucA 2-oxoglutarate d 100.0 2.4E-30 5.2E-35 263.3 22.1 226 35-269 582-835 (924)
35 PRK05261 putative phosphoketol 99.8 2E-19 4.3E-24 180.4 20.1 219 35-269 389-647 (785)
36 TIGR00759 aceE pyruvate dehydr 99.5 1.4E-12 3E-17 131.8 18.7 219 35-269 487-753 (885)
37 cd06586 TPP_enzyme_PYR Pyrimid 99.3 3.2E-11 7E-16 98.8 13.4 117 80-206 32-153 (154)
38 COG2609 AceE Pyruvate dehydrog 99.2 7.7E-10 1.7E-14 108.6 16.3 245 7-269 454-756 (887)
39 COG3957 Phosphoketolase [Carbo 99.0 7.7E-09 1.7E-13 101.8 15.2 224 35-269 399-657 (793)
40 PRK07119 2-ketoisovalerate fer 98.9 1.4E-07 3.1E-12 88.4 18.4 180 78-269 44-277 (352)
41 PRK08659 2-oxoglutarate ferred 98.6 5.2E-06 1.1E-10 78.6 18.6 111 84-206 49-170 (376)
42 PRK12270 kgd alpha-ketoglutara 98.4 3.5E-06 7.6E-11 86.3 14.0 212 35-259 885-1130(1228)
43 PRK09627 oorA 2-oxoglutarate-a 98.3 4.1E-05 8.9E-10 72.4 16.2 108 86-206 50-169 (375)
44 TIGR03336 IOR_alpha indolepyru 98.2 3.8E-05 8.3E-10 76.8 16.1 171 85-269 47-258 (595)
45 PRK09622 porA pyruvate flavodo 98.1 0.00015 3.2E-09 69.4 16.7 171 86-269 59-298 (407)
46 PF03894 XFP: D-xylulose 5-pho 98.0 0.00036 7.9E-09 58.8 14.5 152 41-196 2-178 (179)
47 PRK08366 vorA 2-ketoisovalerat 97.9 0.00083 1.8E-08 63.9 17.0 104 91-206 56-165 (390)
48 TIGR03710 OAFO_sf 2-oxoacid:ac 97.8 0.00079 1.7E-08 67.0 15.9 111 85-206 238-359 (562)
49 KOG0451 Predicted 2-oxoglutara 97.7 0.00018 4E-09 69.9 8.6 218 35-262 562-820 (913)
50 COG0567 SucA 2-oxoglutarate de 97.5 0.00017 3.7E-09 73.8 6.7 171 35-213 564-760 (906)
51 PRK08367 porA pyruvate ferredo 97.5 0.0066 1.4E-07 57.9 16.7 106 90-206 56-168 (394)
52 KOG0450 2-oxoglutarate dehydro 97.4 0.00055 1.2E-08 68.2 8.3 239 15-261 622-916 (1017)
53 cd07034 TPP_PYR_PFOR_IOR-alpha 97.1 0.042 9.2E-07 45.2 15.5 108 84-205 42-158 (160)
54 COG4231 Indolepyruvate ferredo 96.9 0.059 1.3E-06 53.7 16.4 113 84-206 58-174 (640)
55 cd07035 TPP_PYR_POX_like Pyrim 96.8 0.018 4E-07 47.0 10.4 110 85-205 36-153 (155)
56 TIGR03297 Ppyr-DeCO2ase phosph 96.6 0.014 3.1E-07 55.0 9.3 115 85-210 28-155 (361)
57 PF01855 POR_N: Pyruvate flavo 96.5 0.011 2.5E-07 52.3 8.1 110 86-206 38-153 (230)
58 TIGR02176 pyruv_ox_red pyruvat 96.5 0.15 3.2E-06 55.1 17.8 104 90-206 57-168 (1165)
59 TIGR03845 sulfopyru_alph sulfo 96.4 0.052 1.1E-06 45.2 11.1 108 90-208 40-155 (157)
60 PF02776 TPP_enzyme_N: Thiamin 96.3 0.06 1.3E-06 45.0 11.0 126 73-210 30-164 (172)
61 PRK07092 benzoylformate decarb 95.4 0.52 1.1E-05 46.5 14.9 114 85-209 50-172 (530)
62 PRK07524 hypothetical protein; 95.1 0.41 8.9E-06 47.3 13.1 111 89-210 44-166 (535)
63 PRK08322 acetolactate synthase 95.1 0.33 7.2E-06 47.9 12.5 112 89-210 43-162 (547)
64 cd07039 TPP_PYR_POX Pyrimidine 95.0 0.42 9E-06 39.9 11.0 109 89-207 43-158 (164)
65 PRK08611 pyruvate oxidase; Pro 95.0 1.6 3.5E-05 43.6 17.1 115 85-210 45-166 (576)
66 PRK07586 hypothetical protein; 94.9 0.59 1.3E-05 45.9 13.4 112 89-210 44-163 (514)
67 cd02001 TPP_ComE_PpyrDC Thiami 94.8 0.97 2.1E-05 37.4 12.5 144 41-204 2-151 (157)
68 PRK06965 acetolactate synthase 94.6 1.9 4.1E-05 43.2 16.3 113 85-209 61-182 (587)
69 TIGR02418 acolac_catab acetola 94.5 0.49 1.1E-05 46.8 11.9 115 85-210 38-160 (539)
70 PRK07525 sulfoacetaldehyde ace 94.5 0.42 9.2E-06 47.8 11.5 110 89-210 48-166 (588)
71 PRK13030 2-oxoacid ferredoxin 94.5 0.99 2.1E-05 48.7 14.6 163 28-205 9-200 (1159)
72 PRK06457 pyruvate dehydrogenas 94.4 0.6 1.3E-05 46.3 12.1 112 89-210 44-162 (549)
73 PRK07418 acetolactate synthase 94.2 2.6 5.6E-05 42.5 16.4 115 85-210 62-184 (616)
74 COG4032 Predicted thiamine-pyr 94.1 0.11 2.4E-06 42.5 5.1 111 85-207 42-163 (172)
75 PRK11269 glyoxylate carboligas 94.0 2.4 5.2E-05 42.5 15.7 112 85-209 44-166 (591)
76 cd02004 TPP_BZL_OCoD_HPCL Thia 94.0 1.4 3E-05 36.7 11.9 111 83-204 38-168 (172)
77 PRK07064 hypothetical protein; 93.9 1.5 3.3E-05 43.3 13.9 110 89-209 46-167 (544)
78 PRK08199 thiamine pyrophosphat 93.8 0.88 1.9E-05 45.2 12.1 113 89-211 51-171 (557)
79 TIGR02720 pyruv_oxi_spxB pyruv 93.8 1.6 3.4E-05 43.6 13.9 111 89-210 43-161 (575)
80 PRK05858 hypothetical protein; 93.7 0.79 1.7E-05 45.4 11.6 114 85-209 44-165 (542)
81 PLN02470 acetolactate synthase 93.7 1.7 3.8E-05 43.4 14.1 114 85-209 53-174 (585)
82 PRK06466 acetolactate synthase 93.4 1.8 3.8E-05 43.2 13.5 112 85-209 44-165 (574)
83 PRK07710 acetolactate synthase 93.4 2 4.3E-05 42.8 13.8 123 74-209 46-176 (571)
84 PRK09107 acetolactate synthase 93.3 1.8 3.8E-05 43.5 13.3 150 43-209 13-172 (595)
85 PRK06725 acetolactate synthase 93.3 1.5 3.2E-05 43.8 12.7 115 85-210 54-176 (570)
86 cd07037 TPP_PYR_MenD Pyrimidin 93.2 0.91 2E-05 37.9 9.5 108 89-205 40-160 (162)
87 PRK11865 pyruvate ferredoxin o 93.1 3.8 8.2E-05 37.8 14.1 111 86-205 64-208 (299)
88 TIGR02177 PorB_KorB 2-oxoacid: 93.1 3.3 7.1E-05 37.9 13.6 142 39-204 12-182 (287)
89 cd02009 TPP_SHCHC_synthase Thi 92.7 2.4 5.2E-05 35.5 11.5 113 81-204 39-171 (175)
90 PRK06546 pyruvate dehydrogenas 92.7 2.2 4.8E-05 42.7 13.0 110 91-210 48-164 (578)
91 PRK08978 acetolactate synthase 92.7 1.5 3.2E-05 43.5 11.7 114 85-209 40-161 (548)
92 TIGR01504 glyox_carbo_lig glyo 92.6 1.9 4E-05 43.3 12.4 113 85-210 43-166 (588)
93 PRK09124 pyruvate dehydrogenas 92.6 2.9 6.3E-05 41.7 13.7 110 91-210 48-164 (574)
94 cd02010 TPP_ALS Thiamine pyrop 92.5 2 4.3E-05 36.1 10.7 112 83-205 38-167 (177)
95 PRK06048 acetolactate synthase 92.5 3 6.4E-05 41.5 13.6 114 85-209 47-168 (561)
96 TIGR03394 indol_phenyl_DC indo 92.4 3.7 7.9E-05 40.7 14.0 150 44-210 3-167 (535)
97 TIGR03457 sulphoacet_xsc sulfo 92.3 1.7 3.7E-05 43.4 11.6 110 90-210 45-162 (579)
98 PRK11866 2-oxoacid ferredoxin 92.3 5.3 0.00012 36.4 13.8 149 36-204 15-188 (279)
99 cd02015 TPP_AHAS Thiamine pyro 92.1 3.7 7.9E-05 34.6 11.9 111 83-204 40-170 (186)
100 TIGR00118 acolac_lg acetolacta 92.1 1.4 3.1E-05 43.6 10.8 114 85-209 41-162 (558)
101 PRK07979 acetolactate synthase 92.1 1.9 4.1E-05 43.0 11.7 115 85-210 44-166 (574)
102 PRK08617 acetolactate synthase 92.0 2.5 5.4E-05 41.9 12.3 111 89-209 47-165 (552)
103 PRK08266 hypothetical protein; 91.9 2.9 6.4E-05 41.3 12.7 111 89-210 48-170 (542)
104 cd03371 TPP_PpyrDC Thiamine py 91.9 7.2 0.00016 33.2 13.9 111 83-205 41-160 (188)
105 cd02003 TPP_IolD Thiamine pyro 91.8 5.1 0.00011 34.4 12.6 37 167-204 144-180 (205)
106 cd02014 TPP_POX Thiamine pyrop 91.6 4.6 0.0001 33.8 12.0 116 77-204 36-169 (178)
107 PRK12474 hypothetical protein; 91.6 4.3 9.3E-05 39.9 13.5 115 85-210 45-167 (518)
108 PRK08979 acetolactate synthase 91.6 6.4 0.00014 39.3 14.8 114 85-209 44-165 (572)
109 cd07038 TPP_PYR_PDC_IPDC_like 91.5 3.7 7.9E-05 34.0 11.0 108 88-206 39-161 (162)
110 TIGR03846 sulfopy_beta sulfopy 91.4 7.1 0.00015 33.0 12.9 143 40-205 1-153 (181)
111 PRK11867 2-oxoglutarate ferred 91.3 7.3 0.00016 35.6 13.7 146 36-204 25-198 (286)
112 cd02018 TPP_PFOR Thiamine pyro 91.1 10 0.00022 33.5 15.2 111 83-204 52-199 (237)
113 PRK11864 2-ketoisovalerate fer 91.1 2.2 4.7E-05 39.4 10.0 35 171-205 170-204 (300)
114 PRK06456 acetolactate synthase 91.1 2.5 5.3E-05 42.1 11.2 112 89-210 48-167 (572)
115 PF02775 TPP_enzyme_C: Thiamin 90.9 2.6 5.5E-05 34.2 9.4 110 83-203 18-151 (153)
116 cd00568 TPP_enzymes Thiamine p 90.9 3.3 7.2E-05 33.7 10.2 98 96-204 51-165 (168)
117 PRK07282 acetolactate synthase 90.8 2.1 4.6E-05 42.6 10.5 114 85-209 50-171 (566)
118 cd02013 TPP_Xsc_like Thiamine 90.8 4.3 9.3E-05 34.6 11.1 113 80-204 41-175 (196)
119 COG0028 IlvB Thiamine pyrophos 90.8 3.1 6.7E-05 41.5 11.6 115 85-210 41-163 (550)
120 cd02002 TPP_BFDC Thiamine pyro 90.7 4.8 0.0001 33.4 11.1 111 83-204 40-175 (178)
121 PRK08273 thiamine pyrophosphat 90.2 3.1 6.6E-05 41.8 11.1 113 89-210 47-166 (597)
122 PRK08155 acetolactate synthase 89.9 5.3 0.00011 39.7 12.4 112 83-205 409-540 (564)
123 cd03376 TPP_PFOR_porB_like Thi 89.9 13 0.00029 32.8 14.1 36 168-204 158-196 (235)
124 PRK08155 acetolactate synthase 89.7 8.5 0.00018 38.3 13.7 114 85-209 53-174 (564)
125 PRK08327 acetolactate synthase 89.7 3.4 7.4E-05 41.2 10.9 114 85-209 52-182 (569)
126 TIGR03254 oxalate_oxc oxalyl-C 89.5 3.9 8.5E-05 40.5 11.1 112 89-211 45-167 (554)
127 PRK08527 acetolactate synthase 88.8 4.4 9.4E-05 40.3 10.9 110 89-209 46-164 (563)
128 PRK06882 acetolactate synthase 88.8 5.1 0.00011 39.9 11.4 114 85-209 44-165 (574)
129 PRK07789 acetolactate synthase 88.6 4.3 9.4E-05 40.8 10.8 115 85-210 71-193 (612)
130 TIGR03393 indolpyr_decarb indo 88.2 6.9 0.00015 38.7 11.8 114 88-211 43-169 (539)
131 PRK06112 acetolactate synthase 88.1 5 0.00011 40.0 10.8 115 85-210 51-173 (578)
132 PRK09259 putative oxalyl-CoA d 87.5 6.6 0.00014 39.1 11.3 112 89-211 52-174 (569)
133 PRK07449 2-succinyl-5-enolpyru 87.3 15 0.00033 36.4 13.7 111 89-208 52-174 (568)
134 cd02007 TPP_DXS Thiamine pyrop 87.2 6.9 0.00015 33.5 9.8 98 95-205 79-187 (195)
135 cd02008 TPP_IOR_alpha Thiamine 86.2 8 0.00017 32.3 9.5 96 98-204 58-173 (178)
136 CHL00099 ilvB acetohydroxyacid 86.1 7.5 0.00016 38.9 10.8 114 85-209 53-174 (585)
137 PRK06276 acetolactate synthase 85.6 8.1 0.00018 38.7 10.8 115 85-210 40-162 (586)
138 cd03375 TPP_OGFOR Thiamine pyr 85.6 16 0.00034 31.2 11.2 36 168-204 142-180 (193)
139 cd03372 TPP_ComE Thiamine pyro 85.4 21 0.00045 30.0 12.9 142 41-205 2-152 (179)
140 PRK11869 2-oxoacid ferredoxin 85.2 30 0.00065 31.6 13.6 149 35-205 15-190 (280)
141 TIGR03297 Ppyr-DeCO2ase phosph 84.8 36 0.00077 32.2 14.4 111 83-205 214-333 (361)
142 PRK06154 hypothetical protein; 84.6 13 0.00029 37.0 11.8 150 35-210 18-178 (565)
143 PRK09628 oorB 2-oxoglutarate-a 84.0 33 0.00072 31.2 14.2 141 41-204 29-197 (277)
144 TIGR00118 acolac_lg acetolacta 83.8 15 0.00033 36.4 11.7 146 42-204 367-532 (558)
145 PRK06163 hypothetical protein; 83.7 22 0.00048 30.7 11.3 111 83-205 50-170 (202)
146 TIGR03254 oxalate_oxc oxalyl-C 83.1 18 0.00039 35.8 12.0 147 43-204 371-534 (554)
147 cd02012 TPP_TK Thiamine pyroph 82.7 13 0.00029 33.0 9.9 100 96-206 110-225 (255)
148 PRK06276 acetolactate synthase 82.0 17 0.00036 36.4 11.3 111 83-204 409-539 (586)
149 cd02006 TPP_Gcl Thiamine pyrop 81.9 12 0.00026 31.9 9.0 145 43-204 13-190 (202)
150 COG0674 PorA Pyruvate:ferredox 81.4 24 0.00052 33.4 11.5 106 88-204 51-162 (365)
151 PRK08266 hypothetical protein; 81.2 22 0.00048 35.0 11.8 111 83-204 392-521 (542)
152 PRK06457 pyruvate dehydrogenas 81.0 29 0.00064 34.3 12.5 111 83-204 386-515 (549)
153 PRK08617 acetolactate synthase 80.2 27 0.00059 34.5 12.0 111 81-204 402-532 (552)
154 PRK05444 1-deoxy-D-xylulose-5- 80.0 14 0.0003 37.0 10.0 100 96-206 122-240 (580)
155 TIGR00173 menD 2-succinyl-5-en 80.0 16 0.00034 35.1 10.0 111 89-208 43-166 (432)
156 PRK06048 acetolactate synthase 79.8 32 0.0007 34.2 12.4 111 83-204 404-534 (561)
157 PLN02573 pyruvate decarboxylas 79.5 19 0.00042 36.0 10.8 110 90-210 60-184 (578)
158 PRK08527 acetolactate synthase 78.9 24 0.00053 35.0 11.3 111 83-204 404-534 (563)
159 PRK06546 pyruvate dehydrogenas 78.5 24 0.00052 35.3 11.1 110 83-205 398-527 (578)
160 PRK12315 1-deoxy-D-xylulose-5- 78.4 27 0.00058 35.2 11.3 111 85-206 108-241 (581)
161 PRK09193 indolepyruvate ferred 78.0 11 0.00023 41.1 8.7 163 28-205 17-208 (1165)
162 PRK07092 benzoylformate decarb 77.7 38 0.00083 33.3 12.1 111 83-204 398-526 (530)
163 PRK08978 acetolactate synthase 77.7 40 0.00087 33.3 12.3 111 83-204 391-521 (548)
164 PRK06882 acetolactate synthase 77.4 49 0.0011 32.9 12.9 145 43-204 377-542 (574)
165 PRK05858 hypothetical protein; 76.9 29 0.00063 34.3 11.1 112 83-205 397-527 (542)
166 PRK06965 acetolactate synthase 76.2 41 0.00089 33.7 12.0 112 83-205 427-559 (587)
167 TIGR02418 acolac_catab acetola 76.1 55 0.0012 32.3 12.8 112 82-204 397-526 (539)
168 PRK08322 acetolactate synthase 76.0 53 0.0012 32.4 12.7 112 83-205 396-525 (547)
169 PLN02790 transketolase 75.5 17 0.00037 37.1 9.2 75 122-206 153-236 (654)
170 PF10740 DUF2529: Protein of u 74.3 5.9 0.00013 33.5 4.6 84 185-268 25-112 (172)
171 COG1071 AcoA Pyruvate/2-oxoglu 73.2 23 0.0005 33.5 8.7 101 94-205 143-258 (358)
172 PRK09259 putative oxalyl-CoA d 72.5 63 0.0014 32.2 12.2 146 43-204 378-542 (569)
173 PRK05899 transketolase; Review 72.4 27 0.00059 35.3 9.7 74 123-206 167-246 (624)
174 PRK06466 acetolactate synthase 72.3 62 0.0014 32.2 12.2 111 83-204 413-544 (574)
175 PRK08199 thiamine pyrophosphat 71.7 57 0.0012 32.3 11.7 112 83-205 406-535 (557)
176 PRK09107 acetolactate synthase 71.5 63 0.0014 32.4 12.1 112 83-205 420-551 (595)
177 PRK09124 pyruvate dehydrogenas 70.7 88 0.0019 31.1 12.9 111 83-204 398-526 (574)
178 PRK06456 acetolactate synthase 70.2 82 0.0018 31.3 12.5 111 83-204 411-541 (572)
179 PRK08273 thiamine pyrophosphat 68.8 83 0.0018 31.6 12.2 38 167-205 506-543 (597)
180 PRK07524 hypothetical protein; 68.5 96 0.0021 30.5 12.5 112 83-205 396-526 (535)
181 PF09363 XFP_C: XFP C-terminal 68.3 9.4 0.0002 33.2 4.6 31 239-269 35-68 (203)
182 PTZ00089 transketolase; Provis 68.1 47 0.001 34.0 10.4 75 122-206 164-247 (661)
183 PRK07449 2-succinyl-5-enolpyru 67.9 33 0.00071 34.1 9.1 97 96-204 430-545 (568)
184 PRK06154 hypothetical protein; 67.0 1.4E+02 0.0031 29.8 13.9 111 83-204 421-551 (565)
185 PRK06112 acetolactate synthase 67.0 84 0.0018 31.3 11.9 109 85-204 429-556 (578)
186 PLN02470 acetolactate synthase 66.9 93 0.002 31.1 12.1 112 83-205 416-554 (585)
187 PRK07418 acetolactate synthase 65.5 1.3E+02 0.0028 30.3 12.9 112 83-205 424-556 (616)
188 PRK12474 hypothetical protein; 64.6 1.4E+02 0.0031 29.3 12.8 146 42-204 345-515 (518)
189 TIGR01504 glyox_carbo_lig glyo 64.3 64 0.0014 32.3 10.4 111 83-204 408-551 (588)
190 COG0028 IlvB Thiamine pyrophos 64.1 77 0.0017 31.7 10.8 112 82-204 397-527 (550)
191 PF12500 TRSP: TRSP domain C t 63.9 12 0.00026 31.2 4.3 33 237-269 56-88 (155)
192 cd00859 HisRS_anticodon HisRS 63.9 14 0.0003 26.1 4.2 30 240-269 3-33 (91)
193 TIGR03336 IOR_alpha indolepyru 63.9 1.4E+02 0.003 30.1 12.7 113 83-205 395-527 (595)
194 PRK11269 glyoxylate carboligas 63.3 1.2E+02 0.0027 30.2 12.3 111 83-204 409-552 (591)
195 PRK07789 acetolactate synthase 63.2 94 0.002 31.3 11.4 112 83-205 437-573 (612)
196 PRK05778 2-oxoglutarate ferred 63.1 79 0.0017 29.1 10.0 144 36-204 26-199 (301)
197 PRK07710 acetolactate synthase 62.9 1E+02 0.0023 30.6 11.6 111 83-204 414-544 (571)
198 TIGR03393 indolpyr_decarb indo 62.0 1.7E+02 0.0036 28.9 13.8 143 43-204 361-523 (539)
199 PLN02980 2-oxoglutarate decarb 60.9 63 0.0014 36.8 10.5 109 89-206 344-465 (1655)
200 TIGR02720 pyruv_oxi_spxB pyruv 60.6 1.7E+02 0.0038 29.1 12.7 111 83-204 398-528 (575)
201 KOG0225 Pyruvate dehydrogenase 59.7 55 0.0012 30.8 8.1 103 93-206 169-285 (394)
202 PRK13029 2-oxoacid ferredoxin 59.7 35 0.00077 37.3 7.9 164 27-205 19-211 (1186)
203 PRK08979 acetolactate synthase 59.0 1.5E+02 0.0032 29.6 11.9 111 83-204 411-542 (572)
204 TIGR03457 sulphoacet_xsc sulfo 59.0 1.7E+02 0.0037 29.2 12.4 111 83-204 420-553 (579)
205 PRK07064 hypothetical protein; 55.5 89 0.0019 30.8 9.6 111 83-204 396-524 (544)
206 PRK07979 acetolactate synthase 54.7 2.3E+02 0.005 28.2 12.7 111 83-204 411-544 (574)
207 PRK12753 transketolase; Review 54.4 59 0.0013 33.4 8.2 75 122-206 162-244 (663)
208 PF01565 FAD_binding_4: FAD bi 53.7 18 0.00039 28.5 3.6 76 177-257 3-81 (139)
209 cd00858 GlyRS_anticodon GlyRS 53.5 22 0.00047 27.7 4.0 33 238-270 26-61 (121)
210 PRK08611 pyruvate oxidase; Pro 53.2 1.5E+02 0.0033 29.5 10.9 112 83-205 398-527 (576)
211 cd00860 ThrRS_anticodon ThrRS 52.9 23 0.00049 25.4 3.8 30 240-269 3-33 (91)
212 PRK07525 sulfoacetaldehyde ace 51.3 2.6E+02 0.0057 27.9 12.5 111 83-204 425-558 (588)
213 PRK07586 hypothetical protein; 50.8 2.5E+02 0.0054 27.4 13.0 37 167-204 475-511 (514)
214 PF12328 Rpp20: Rpp20 subunit 50.4 25 0.00055 28.8 4.0 34 237-270 60-94 (144)
215 COG2820 Udp Uridine phosphoryl 50.4 26 0.00056 31.3 4.3 68 177-267 19-86 (248)
216 PRK06725 acetolactate synthase 49.6 1.1E+02 0.0025 30.4 9.3 112 83-205 412-542 (570)
217 TIGR01718 Uridine-psphlse urid 49.5 56 0.0012 28.9 6.5 69 176-267 13-81 (245)
218 cd00738 HGTP_anticodon HGTP an 49.2 28 0.00061 25.0 3.9 31 240-270 3-37 (94)
219 PF01918 Alba: Alba; InterPro 48.3 32 0.00069 24.0 3.8 26 239-264 31-56 (70)
220 cd00861 ProRS_anticodon_short 47.7 31 0.00067 25.0 3.9 30 240-269 3-36 (94)
221 cd02005 TPP_PDC_IPDC Thiamine 47.7 1.7E+02 0.0036 24.5 10.7 145 43-204 7-170 (183)
222 TIGR00204 dxs 1-deoxy-D-xylulo 47.6 1.4E+02 0.003 30.3 9.7 36 170-206 234-272 (617)
223 CHL00099 ilvB acetohydroxyacid 47.2 2E+02 0.0043 28.8 10.6 111 83-204 420-551 (585)
224 TIGR03181 PDH_E1_alph_x pyruva 46.2 1.2E+02 0.0026 28.3 8.4 62 142-205 171-243 (341)
225 PF00456 Transketolase_N: Tran 44.8 95 0.0021 29.0 7.4 39 167-206 199-241 (332)
226 COG0674 PorA Pyruvate:ferredox 43.6 29 0.00064 32.8 3.9 33 237-269 255-288 (365)
227 COG4231 Indolepyruvate ferredo 41.0 1E+02 0.0022 31.4 7.2 110 88-206 425-552 (640)
228 PF04430 DUF498: Protein of un 40.5 15 0.00033 28.3 1.2 33 237-269 52-85 (110)
229 cd00248 Mth938-like Mth938-lik 36.5 22 0.00047 27.5 1.5 31 239-269 53-84 (109)
230 KOG1395 Tryptophan synthase be 36.0 3.9E+02 0.0085 25.6 9.8 88 43-131 127-219 (477)
231 TIGR00232 tktlase_bact transke 36.0 3E+02 0.0065 28.2 10.0 75 122-206 158-240 (653)
232 PRK12571 1-deoxy-D-xylulose-5- 35.8 1.9E+02 0.0041 29.6 8.5 38 168-206 240-281 (641)
233 cd05125 Mth938_2P1-like Mth938 35.7 24 0.00052 27.7 1.7 34 236-269 52-86 (114)
234 COG2805 PilT Tfp pilus assembl 34.3 41 0.00089 31.4 3.1 22 41-62 185-206 (353)
235 PLN02573 pyruvate decarboxylas 34.0 4.2E+02 0.0091 26.5 10.6 112 83-204 418-548 (578)
236 PLN02234 1-deoxy-D-xylulose-5- 34.0 2.4E+02 0.0051 29.0 8.8 101 95-206 181-319 (641)
237 PRK08327 acetolactate synthase 34.0 1.7E+02 0.0038 29.1 7.9 143 43-204 390-563 (569)
238 PF00676 E1_dh: Dehydrogenase 33.9 54 0.0012 30.0 3.9 99 97-205 107-222 (300)
239 COG1165 MenD 2-succinyl-6-hydr 33.9 5.1E+02 0.011 26.1 12.5 142 47-205 15-172 (566)
240 COG0124 HisS Histidyl-tRNA syn 33.5 59 0.0013 31.6 4.2 33 237-269 334-367 (429)
241 cd03028 GRX_PICOT_like Glutare 33.4 59 0.0013 23.8 3.4 31 238-268 7-41 (90)
242 PRK11183 D-lactate dehydrogena 33.2 1.7E+02 0.0037 29.5 7.4 86 172-259 37-126 (564)
243 COG3961 Pyruvate decarboxylase 33.0 1.4E+02 0.003 29.8 6.7 149 43-209 6-171 (557)
244 PRK07282 acetolactate synthase 32.9 4.1E+02 0.0089 26.4 10.3 110 83-204 408-537 (566)
245 PF07931 CPT: Chloramphenicol 31.9 3.1E+02 0.0067 23.0 8.2 23 93-115 69-91 (174)
246 PRK11178 uridine phosphorylase 31.2 1.4E+02 0.0031 26.5 6.1 69 177-268 19-87 (251)
247 cd05560 Xcc1710_like Xcc1710_l 31.0 34 0.00074 26.5 1.8 32 238-269 52-84 (109)
248 PLN02980 2-oxoglutarate decarb 30.8 3.5E+02 0.0077 31.0 10.3 38 167-205 849-886 (1655)
249 PF00975 Thioesterase: Thioest 29.6 85 0.0018 26.4 4.3 29 240-268 67-95 (229)
250 KOG1184 Thiamine pyrophosphate 29.3 3.2E+02 0.0069 27.4 8.4 148 43-208 6-170 (561)
251 PRK12754 transketolase; Review 28.4 3.3E+02 0.0071 28.1 8.8 75 122-206 162-244 (663)
252 PLN02374 pyruvate dehydrogenas 28.2 3.2E+02 0.007 26.5 8.4 61 142-205 250-322 (433)
253 COG0277 GlcD FAD/FMN-containin 27.9 2.3E+02 0.005 26.8 7.4 83 169-258 27-113 (459)
254 COG0299 PurN Folate-dependent 27.9 86 0.0019 27.2 3.9 48 36-90 60-108 (200)
255 CHL00149 odpA pyruvate dehydro 27.9 3.8E+02 0.0083 25.0 8.6 62 142-205 184-256 (341)
256 KOG1185 Thiamine pyrophosphate 27.5 4.6E+02 0.01 26.2 9.1 151 37-204 380-556 (571)
257 cd05126 Mth938 Mth938 domain. 27.4 28 0.00061 27.4 0.8 35 235-269 55-91 (117)
258 PLN02269 Pyruvate dehydrogenas 27.0 3.8E+02 0.0083 25.3 8.5 62 142-205 187-256 (362)
259 TIGR00106 uncharacterized prot 26.4 1.2E+02 0.0026 23.0 4.1 21 250-270 18-38 (97)
260 PRK11230 glycolate oxidase sub 26.3 3.1E+02 0.0067 27.0 8.0 36 169-205 51-86 (499)
261 TIGR00596 rad1 DNA repair prot 26.0 2.7E+02 0.0059 29.4 7.9 69 121-197 644-726 (814)
262 PRK10897 phosphohistidinoprote 25.2 99 0.0021 23.1 3.4 31 235-265 57-87 (90)
263 PF03853 YjeF_N: YjeF-related 24.7 1.1E+02 0.0023 25.4 3.9 29 241-269 29-57 (169)
264 TIGR03394 indol_phenyl_DC indo 24.7 6.9E+02 0.015 24.7 10.5 142 43-204 361-517 (535)
265 PF11823 DUF3343: Protein of u 24.6 82 0.0018 22.2 2.8 21 249-269 10-30 (73)
266 COG1010 CobJ Precorrin-3B meth 24.5 86 0.0019 28.0 3.3 35 235-269 69-108 (249)
267 COG1691 NCAIR mutase (PurE)-re 24.2 3.1E+02 0.0067 24.5 6.7 30 239-268 118-148 (254)
268 TIGR00365 monothiol glutaredox 24.0 1E+02 0.0022 23.0 3.3 31 238-268 11-45 (97)
269 TIGR01678 FAD_lactone_ox sugar 23.9 2.8E+02 0.0062 26.8 7.2 86 172-267 13-101 (438)
270 COG4981 Enoyl reductase domain 23.7 1.6E+02 0.0034 29.8 5.2 53 123-182 160-220 (717)
271 TIGR00107 deoD purine-nucleosi 23.6 3.1E+02 0.0067 23.9 6.8 69 177-267 12-81 (232)
272 PF00070 Pyr_redox: Pyridine n 23.1 95 0.0021 21.8 2.9 31 238-268 22-58 (80)
273 PRK13982 bifunctional SbtC-lik 22.7 2.7E+02 0.0058 27.5 6.7 33 237-269 69-102 (475)
274 TIGR00387 glcD glycolate oxida 22.5 2.7E+02 0.0059 26.5 6.7 28 178-205 1-28 (413)
275 PF09954 DUF2188: Uncharacteri 22.2 1.4E+02 0.003 20.3 3.4 33 230-263 9-41 (62)
276 PRK09754 phenylpropionate diox 22.2 90 0.0019 29.3 3.3 32 237-268 166-204 (396)
277 PRK10310 PTS system galactitol 22.1 1.2E+02 0.0025 22.7 3.3 27 243-269 6-36 (94)
278 PRK13984 putative oxidoreducta 22.0 93 0.002 31.1 3.5 31 236-269 281-311 (604)
279 COG1925 FruB Phosphotransferas 21.5 1.3E+02 0.0027 22.6 3.3 29 235-263 55-83 (88)
280 COG5659 FOG: Transposase [DNA 21.5 4E+02 0.0087 25.5 7.3 92 36-133 74-181 (385)
281 PRK12436 UDP-N-acetylenolpyruv 21.1 1.2E+02 0.0027 27.8 3.9 29 177-205 39-67 (305)
282 COG1040 ComFC Predicted amidop 21.1 64 0.0014 28.3 1.9 21 243-266 193-213 (225)
283 TIGR03186 AKGDH_not_PDH alpha- 20.8 1.1E+03 0.023 25.5 11.2 50 122-181 234-289 (889)
284 PF13738 Pyr_redox_3: Pyridine 20.8 1.1E+02 0.0024 25.1 3.3 30 237-269 166-195 (203)
285 PRK13905 murB UDP-N-acetylenol 20.6 4.6E+02 0.01 23.7 7.6 29 177-205 33-61 (298)
286 TIGR01316 gltA glutamate synth 20.5 1.1E+02 0.0025 29.3 3.7 30 237-269 132-161 (449)
287 PRK12810 gltD glutamate syntha 20.4 1.1E+02 0.0024 29.6 3.6 30 237-269 142-171 (471)
No 1
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.4e-60 Score=444.40 Aligned_cols=253 Identities=88% Similarity=1.323 Sum_probs=230.7
Q ss_pred ceeeccCC-CCCcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhH
Q 024237 17 VARIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95 (270)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~ 95 (270)
+.|-||+. .-.+.|+++..+++++++|+++|.+++++|++++++++|++.+++.|+.+++|.++|+|+||||+||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~ 85 (356)
T PLN02683 6 LRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAG 85 (356)
T ss_pred ccCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHH
Confidence 45667754 34588999888899999999999999999999999999998888888888899999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCC
Q 024237 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPG 175 (270)
Q Consensus 96 ~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn 175 (270)
|+|+|+|||++|++||++++++||++|+||||+|++|+++||+||+.++||++++++|...+.|+||++.++++||+|||
T Consensus 86 ~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPn 165 (356)
T PLN02683 86 FTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPG 165 (356)
T ss_pred HHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999998887767899998888999999999
Q ss_pred cEEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHH
Q 024237 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK 255 (270)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~ 255 (270)
|+|++|+|+.|++.+++++++.++|+|||+++.++++++|.....+++++.+++|+++++|+|+|+|||++|+|+++|++
T Consensus 166 l~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~ 245 (356)
T PLN02683 166 LKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALK 245 (356)
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHH
Confidence 99999999999999999999999999999988877665543332233357788999999999999999999999999999
Q ss_pred HHHHHHhcCCCeee
Q 024237 256 AAEILAKEGISAEV 269 (270)
Q Consensus 256 Aa~~L~~~Gi~~~V 269 (270)
|+++|+++||+++|
T Consensus 246 Aa~~L~~~GI~v~V 259 (356)
T PLN02683 246 AAEILAKEGISAEV 259 (356)
T ss_pred HHHHHHhcCCCEEE
Confidence 99999999999997
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=8.9e-61 Score=441.48 Aligned_cols=230 Identities=44% Similarity=0.816 Sum_probs=215.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
.++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||||+|+|+|||++|++||++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~ 80 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999999987777778889999999 88 99999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++++||++|+||||+|++|+++||+|++.++||+++++++.+.++|+||||++|++||+||||+|++|+|+.|++.++++
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988665567999999999999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+|||+|+.+|+.+ +.++++++.+++||+.++|+|+|+|||+||.|+++|++|++.|+++||+++|
T Consensus 161 a~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~V 232 (327)
T CHL00144 161 AIRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEI 232 (327)
T ss_pred HHhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999987642 3455667789999999999999999999999999999999999999999998
No 3
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=7.2e-60 Score=435.73 Aligned_cols=232 Identities=69% Similarity=1.140 Sum_probs=217.5
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
|.+++++++|+++|.+++++|++++++++|++.++|+|+++++|+++|||+||||+|||||||+|+|+|||++|++||++
T Consensus 1 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~ 80 (327)
T PRK09212 1 MAQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVE 80 (327)
T ss_pred CCcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEE
Confidence 35678999999999999999999999999999888988989999999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++++||++||||||+|++|+++||+|++.++|+++++++|..+++|+||||+++++||++|||+|++|+|+.|++.++++
T Consensus 81 ~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 81 FMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99889999999999999999999999999999999999888788999999999999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+|||+++.+|+. .++++++++.+++||++++++|+|++||+||++++.|++|++.|+++||+++|
T Consensus 161 a~~~~~Pv~i~~~~~~~~~----~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~v 232 (327)
T PRK09212 161 AIRDPNPVIFLENEILYGH----SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEV 232 (327)
T ss_pred HHhCCCcEEEEEchhhcCC----CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999998776542 23455556789999999999999999999999999999999999999999986
No 4
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.3e-60 Score=420.09 Aligned_cols=231 Identities=55% Similarity=0.889 Sum_probs=222.2
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
++++++|++++|.+.|++|++|+++++|++..+|+|++|++|+++||++|++|++|+|++++|+|.|+|+.|+||++++|
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~ 195 (270)
|.+|++.|+|||.|++++.||||||+.++|++++++.|.+.+.|.+|||+.++++.++||++|++||+|.|++++|++|+
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987766788899999999999999999999999999999999999
Q ss_pred hCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 196 ~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++++||+++||+.+|+. ...++|+++|.+|+||++++|+|+|+|||+||.|++.+++||++|+++||++||
T Consensus 161 rd~dPViflE~k~lY~~---~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EV 231 (324)
T COG0022 161 RDPDPVIFLEHKRLYRS---FKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEV 231 (324)
T ss_pred cCCCCEEEEecHHHhcc---cccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEE
Confidence 99999999999999973 135688889999999999999999999999999999999999999999999998
No 5
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=5.3e-58 Score=438.81 Aligned_cols=232 Identities=70% Similarity=1.113 Sum_probs=216.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
|.++++|++|+++|.+++++|++++++++|++.++|.|+++++|.++|||+||||+||+||||+|+|+|||++|++||++
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 46779999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++++||++|+||||+|++|+++|||||++++||++++++|...+.|++|+++++++||+||||+|++|+|+.|++.+|++
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877666899899999999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccC-CCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++++++|+||++++.+|++.. .++. +++.+++||++++|+|+|+|||++|.|++.|++|+++|+++||+++|
T Consensus 299 ai~~~~Pv~ile~~~ry~~~~----~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~V 371 (464)
T PRK11892 299 AIRDPNPVIFLENEILYGQSF----DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEV 371 (464)
T ss_pred HhhCCCcEEEEechhhcCCCC----CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999988776431 1222 35778999999999999999999999999999999999999999997
No 6
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-57 Score=422.24 Aligned_cols=233 Identities=60% Similarity=0.980 Sum_probs=216.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
|.+++|+++|+++|.+++++|++++++++|++..+++++.+++|+++|||+||||+||+||||+|+|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 57899999999999999999999999999998766777778999999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+++++|++||||||+|++|+++||+|+++++|+++++++|..+++|+||+|++|++||+||||+|++|+|+.|++.++++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~~ 191 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKA 191 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 97788999999999999999999999999999999987777677999999999999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+||++|+.+++... +.++++++.+++||++++++|+|++||++|+++.+|++|++.|+++||+++|
T Consensus 192 a~~~~~P~~i~~p~~l~r~~~---~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~v 264 (355)
T PTZ00182 192 AIRDPNPVVFFEPKLLYRESV---EVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEV 264 (355)
T ss_pred HHhCCCcEEEEeehHHhCCCC---CCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEE
Confidence 999999999999988776432 2233446778999999999999999999999999999999999999999987
No 7
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-57 Score=399.43 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=194.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
...++|++|+++|.++.++|+++|++++|+..++.+ ..|.++| ||||+|+||+||+|+|+|+|||++|++||+++
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~----~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT----GYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccch----hHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence 467899999999999999999999999999877654 7799999 99999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCC-CCCCCcchH--HHHHccCCCcEEEccCCHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGL 190 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~-~G~tH~~~~--~a~lr~iPn~~V~~P~d~~e~~~~ 190 (270)
|++|.+.|+||||||++|| .++||.+++.+ |.+.+ +|+|| |++ +++||.+|||+|+.|+|+.+++.+
T Consensus 80 fa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sH-q~~EDiaimR~lpn~~V~~P~D~v~~~~i 150 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAI 150 (312)
T ss_pred hHHHHHHHHHHHHHHHhhh--------ccCCeEEEEecCCcccCCCCccc-hhHHHHHHHhcCCCceEEccCcHHHHHHH
Confidence 9888777999999999999 58888888764 66655 99999 655 599999999999999999999999
Q ss_pred HHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 191 l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++++.+.++|+|+|+.|. ++| ..++..+|.|++||++++|+|+|+|||++|.|+++||+||++|+++||++.|
T Consensus 151 ~~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~V 223 (312)
T COG3958 151 LDQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAV 223 (312)
T ss_pred HHHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEE
Confidence 999999999999997653 332 2333445999999999999999999999999999999999999999999987
No 8
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.5e-52 Score=361.70 Aligned_cols=235 Identities=71% Similarity=1.140 Sum_probs=228.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
..++.|+|++++|.+.+++|++++++++|++-++|.|+++++|.+|||+.|++|++|+|.+..|+|.|.|+.|++|||+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a 194 (270)
+...|.+.++|||.|++++.+|||||++++|++|++|+|...+.|..|||++.+|+.++||++|++|.+++|++++|+.+
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKaA 192 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKAA 192 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHHh
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 195 ~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++++||+++++..||+..++..++..+.+|..++||+.+.|+|+|||||++..++..+|+||+.|.++|+++||
T Consensus 193 IRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EV 267 (359)
T KOG0524|consen 193 IRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEV 267 (359)
T ss_pred ccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCcee
Confidence 999999999999999998888777766778999999999999999999999999999999999999999999998
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.9e-50 Score=398.81 Aligned_cols=216 Identities=19% Similarity=0.297 Sum_probs=188.3
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
..+|+++|+++|.+++++|++||++++|+...++ +++|+++| |+||||+||||||||++|+|||++|++||+++|
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEee
Confidence 5789999999999999999999999999854322 48899999 999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++|++||||||+||+|+ +++||+++... |..+.+|+||++ .|+++||+||||+|++|+|+.|++.++++
T Consensus 455 -stFlqRAyDQI~~Dval--------~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~ 525 (701)
T PLN02225 455 -SAFLQRAYDQVVHDVDR--------QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVAT 525 (701)
T ss_pred -hhHHHHHHHHHHHHHHh--------hcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 67899999999999998 57788887653 555569999975 55699999999999999999999999999
Q ss_pred hH-hCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AI-RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~-~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++ +.++|+|||++|..+.. .+...++++.+++||++++++|+|++||++|.|+++|++||++|+++||+++|
T Consensus 526 A~~~~~gPv~IR~pRg~~~~----~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtV 598 (701)
T PLN02225 526 AAYVTDRPVCFRFPRGSIVN----MNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTV 598 (701)
T ss_pred HHhcCCCCEEEEecccccCC----CCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEE
Confidence 88 45799999999863211 01111234678999999999999999999999999999999999999999997
No 10
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.7e-49 Score=387.32 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=188.3
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
.++|+++|+++|.+++++|++||++++|+.. ++ . ++.|+++| |+||||+|||||||||+|+|||++|++||+++|
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt-~-~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GT-M-LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Cc-c-hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence 4789999999999999999999999999853 33 2 47899999 999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcchH-HHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++|++||||||+|++|+ +++||++++. .|..+++|+||++.. .++||+||||+|++|+|+.|++.++++
T Consensus 431 -s~Fl~RA~DQI~~dva~--------~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 431 -SSFMQRAYDQVVHDVDL--------QKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 77889999999999997 6899999874 465566999997644 599999999999999999999999999
Q ss_pred hHhC-CCCeEEeecccccCCCCCCcccccC--CCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++.. ++|+|||++|..+.. ..++. .++++++|+++++++|+|+|||++|.|+++|++||++|+++||+++|
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~-----~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~V 575 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIG-----VSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITV 575 (641)
T ss_pred HHhCCCCCEEEEeecccccc-----cccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEE
Confidence 8864 689999999874321 01111 13468899999999999999999999999999999999999999998
No 11
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.2e-48 Score=374.00 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=193.9
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
.+.+|.++|++.|.+++++|+++|.+|+ +|..|+ ++ .+|+++| |+||||+||||||+|++|+|||.+|++||+.+
T Consensus 314 ~~~sys~vf~~~L~~~a~~d~~ivaITa--AM~~gt-GL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 314 SAPSYTKVFGDTLCELAAKDEKIVAITA--AMPEGT-GL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEec--CCCCCC-Ch-HHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 5678999999999999999999999999 888887 55 8899999 99999999999999999999999999999998
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
| ++|+||||||+.||+|. ||+||++... .|..+.+|+||+. .|.++||+||||.|++|+|.+|++.+|+
T Consensus 389 Y-STFLQRAYDQliHDvai--------qnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ 459 (627)
T COG1154 389 Y-STFLQRAYDQLIHDVAI--------QNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY 459 (627)
T ss_pred e-cHHHHHHHHHHHHHHHh--------ccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHH
Confidence 6 89999999999999998 7999999876 5788889999964 6679999999999999999999999999
Q ss_pred HhHhCC-CCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 193 AAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 193 ~a~~~~-~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++..+ +|+.||+||+.-.. .....+...+++|+++++++|+||+|+++|.++..|++||+.|.+.||+++|
T Consensus 460 ta~~~~~gP~AiRyPrg~~~~-----~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TV 532 (627)
T COG1154 460 TALAQDDGPVAIRYPRGNGVG-----VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTV 532 (627)
T ss_pred HHHhcCCCCeEEEecCCCCCC-----CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEE
Confidence 999876 79999988762110 1111123568899999999999999999999999999999999999999987
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.7e-48 Score=385.26 Aligned_cols=215 Identities=21% Similarity=0.321 Sum_probs=188.2
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
..+|.++|+++|.+++++|++||++++|... .+++ .+|+++| |+||||+|||||||+++|+|||+.|++||+++|
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g---~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGG---GTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCCC---ccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence 4589999999999999999999999998643 3454 6899999 999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+.|++||||||+|++|+ +++||++++. .|..+.+|+||++ .|.++||+||||+|++|+|+.|++.++++
T Consensus 430 -s~Fl~RA~DQI~~dval--------~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 430 -SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 77889999999999998 6899999987 4666679999976 44599999999999999999999999999
Q ss_pred hHhC-CCCeEEeecccccCCCCCCcccccCC--CccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDS--SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~--~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++. ++|+|||++|.... . ..++++ ++.+++|+++++++|+|+||||+|.|+++|++||+.|+++||+++|
T Consensus 501 al~~~~gPv~IR~pr~~~~-~----~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~V 574 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNGI-G----VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATV 574 (677)
T ss_pred HHhCCCCCEEEEEecCCCC-C----cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEE
Confidence 9965 59999999876210 0 111211 3568899999999999999999999999999999999999999997
No 13
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.6e-48 Score=384.81 Aligned_cols=215 Identities=23% Similarity=0.370 Sum_probs=190.4
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
..+|+++|+++|.+++++|++||++++|+...++ +++|+++| |+||||+|||||||+|+|+|||++|++||+++|
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIY 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999999854443 48999999 999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcchH-HHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++|++||||||+|++|+ +++||+++++ +|..+++|+||++.. +++||+||||+|++|+|+.|++.++++
T Consensus 384 -a~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~ 454 (617)
T TIGR00204 384 -STFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454 (617)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 77889999999999998 5899999987 466666899997644 499999999999999999999999999
Q ss_pred hHhCC-CCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~-~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.+ +|+|||++|..+.. ....+.++.+++|+++++|+|+|+|||++|.|+++|++||++|+++||+++|
T Consensus 455 a~~~~~~Pv~ir~~r~~~~~-----~~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~V 526 (617)
T TIGR00204 455 GYHYDDGPIAVRYPRGNAVG-----VELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATV 526 (617)
T ss_pred HHhCCCCCEEEEEccCCcCC-----cccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEE
Confidence 99865 99999998764311 0111234678999999999999999999999999999999999999999998
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.4e-47 Score=378.09 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=189.8
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
..+|+++|+++|.+++++|++++++++|+...+ ++ ++|+++| |+||||+||+||+|+|+|+|||++|++||+++|
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~-~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GL-DKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVY 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---Ch-HHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEeh
Confidence 358999999999999999999999999986433 32 8899999 999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+.|++||||||++++|+ +++||++++. .|..+++|+||++ .++++||+||||+|++|+|+.|++.++++
T Consensus 393 -~~Fl~ra~dQI~~~~a~--------~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 463 (641)
T PRK12571 393 -STFLQRGYDQLLHDVAL--------QNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT 463 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 67889999999999997 6899999974 5666679999976 44599999999999999999999999999
Q ss_pred hHh-CCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~-~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++ .++|+|||++|..+.. ..++++++.+++||+.++++|+|+|||++|+|++.|++||++|+++||+++|
T Consensus 464 a~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~V 535 (641)
T PRK12571 464 AAAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTV 535 (641)
T ss_pred HHhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEE
Confidence 998 4899999998763210 1223344668899999999999999999999999999999999999999987
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.2e-47 Score=374.90 Aligned_cols=213 Identities=22% Similarity=0.259 Sum_probs=185.4
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
+.+++++|+++|.+++++|++++++++|+... +++ ++|+++| |+||||+|||||||+++|+|||++|++||+++|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~---~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGV---FGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccc---cCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence 56899999999999999999999999987533 344 8899999 999999999999999999999999999999765
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a 194 (270)
++|++||||||+|++|+ +++||++++.++...++|+||++ .|+++||++|||+|++|+|+.|++.+++++
T Consensus 352 -s~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 -STFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCcccCCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 77889999999999998 58999999875433349999965 446999999999999999999999999999
Q ss_pred HhC-CCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 195 ~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
++. ++|+|||++|..+.. ++..+..+..+++.++++|+|+|||++|+|+++|++||++|+++ ||+++|
T Consensus 423 ~~~~~gP~~ir~~r~~~~~-------~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~V 492 (581)
T PRK12315 423 LTQHEHPVAIRVPEHGVES-------GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATL 492 (581)
T ss_pred HhCCCCcEEEEEcCCccCC-------CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEE
Confidence 986 799999998764321 11112234567999999999999999999999999999999999 999997
No 16
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=7.9e-46 Score=311.72 Aligned_cols=166 Identities=58% Similarity=1.028 Sum_probs=154.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhcCCccEEEeehhhH
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f 119 (270)
++++++|.+++++|++++++++|++..+|++..+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++++++.|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 37899999999999999999999987677777789999999 88 99999999999999999999999999999656778
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCC
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~ 199 (270)
+.|+|||||+++|+++|++||++++||++++++|...++|+||+++++++||+||||+|++|+|+.|++.+++++++.++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999998765567899999999999999999999999999999999999999999
Q ss_pred CeEEeecc
Q 024237 200 PVVFLENE 207 (270)
Q Consensus 200 P~~ir~~~ 207 (270)
|+++++||
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99999874
No 17
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.1e-45 Score=360.53 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=180.3
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeeh
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~ 116 (270)
.+|+++|+++|.+++++|++++++++|+..++ ++ .+|+++| |+||||+||+||+|+|+|+|||++|++||+++|
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f- 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY- 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEee-
Confidence 68999999999999999999999999985433 33 5699999 999999999999999999999999999999996
Q ss_pred hhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (270)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a 194 (270)
+.|+.|++|||++++|+ +++||+++++ +|..+.+|+||++ .++++||+||||+|++|+|+.|++.+++++
T Consensus 353 ~~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 353 STFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 66778999999999998 5899999986 5665568999965 335999999999999999999999999999
Q ss_pred HhC-CCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 195 ~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
++. ++|+|||++|..+.. ...++.+.+++|+++++++|+|+|||++|+|+++|++|+++|+
T Consensus 425 ~~~~~~P~~ir~~r~~~~~------~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~ 486 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGVG------VELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA 486 (580)
T ss_pred HhCCCCcEEEEecCCCCCC------CCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC
Confidence 976 899999998764321 1112256789999999999999999999999999999999996
No 18
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.9e-45 Score=314.68 Aligned_cols=231 Identities=35% Similarity=0.664 Sum_probs=218.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
+++...++++++|.-.+++||+-+++++|++ .+|+|..+-+|+++||.+|+||++++||.++|+..|+|..|-+.|.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 6788999999999999999999999999997 789999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCC-CEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~-pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++.+++..|||||.|.+++.||+||.+.|+ .++++.++|..+..|-.|||+.|++|.+.||++|+.|..|.|++++|.+
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeee
Confidence 999999999999999999999999999999 8899999887777778899999999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHh-cCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAK-EGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~-~Gi~~~V 269 (270)
++++++|+++++++.|||+.. +++|.++|.+++++++++|+|+|+|+|+||..++.++|+|-.-++ +||+++|
T Consensus 198 cirdpnp~iffepk~lyr~a~---edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscev 271 (362)
T KOG0525|consen 198 CIRDPNPCIFFEPKILYRQAV---EDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEV 271 (362)
T ss_pred eccCCCceEEechHHHHHHhh---hhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEE
Confidence 999999999999999998742 578889999999999999999999999999999999998886654 5999987
No 19
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=5e-43 Score=349.48 Aligned_cols=220 Identities=20% Similarity=0.241 Sum_probs=183.4
Q ss_pred CccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCC-CCeeecccchhHHHHHHHHHhh-c
Q 024237 30 YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY-Y 106 (270)
Q Consensus 30 ~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp-~R~id~GIaE~~~vg~AaGlA~-~ 106 (270)
|..+..+.++|++++++|.++++.+++++++++|+..++.+. +-...|+++| | +||||+||+||||+++|+|||+ .
T Consensus 348 ~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~ 426 (661)
T PTZ00089 348 YTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHG 426 (661)
T ss_pred hcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcC
Confidence 333345789999999999999999999999999997655321 0013688889 9 8999999999999999999999 7
Q ss_pred CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCcchH--HHHHccCCCcEEEccC
Q 024237 107 GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLSPY 182 (270)
Q Consensus 107 G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~~~~--~a~lr~iPn~~V~~P~ 182 (270)
|++||+++| +.|++|+|||||+. |+ +++||++++. +|.+ +.+|+|| |.+ .++||+||||+|+.|+
T Consensus 427 G~~P~~~tf-~~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~TH-q~iedia~lR~iPn~~V~~Pa 495 (661)
T PTZ00089 427 GFIPFGATF-LNFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTH-QPVETLALLRATPNLLVIRPA 495 (661)
T ss_pred CCeEEEEeh-HHHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCc-ccHHHHHHHhcCCCcEEEecC
Confidence 899999998 56788999999876 88 6999999974 5654 4599999 544 5999999999999999
Q ss_pred CHHHHHHHHHHhH-hCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeC---CcEEEEEechhHHHHHHHHH
Q 024237 183 SSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKAAE 258 (270)
Q Consensus 183 d~~e~~~~l~~a~-~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G---~dvtIva~G~~v~~al~Aa~ 258 (270)
|++|+..++++++ +.++|+|||++|. ..| .++..+..+..++++++++| .|++||++|+++.+|++|++
T Consensus 496 D~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~ 568 (661)
T PTZ00089 496 DGTETSGAYALALANAKTPTILCLSRQ----NTP---PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAK 568 (661)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHH
Confidence 9999999999999 4579999998765 221 23333344556778899975 79999999999999999999
Q ss_pred HHHhcCCCeee
Q 024237 259 ILAKEGISAEV 269 (270)
Q Consensus 259 ~L~~~Gi~~~V 269 (270)
.|++ ||+++|
T Consensus 569 ~L~~-Gi~~~V 578 (661)
T PTZ00089 569 ALSK-ELNVRV 578 (661)
T ss_pred HHhc-CCCeEE
Confidence 9999 999987
No 20
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=9.5e-43 Score=347.20 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=183.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCCCCeeecccchhHHHHHHHHHhh-cCCccE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPV 111 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~-~G~~Pi 111 (270)
..++++|++++++|.++++++|+++++++|++.++.+. .-...|+++| |+||||+||+||||+++|+|||+ .|++||
T Consensus 352 ~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 352 PAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred ccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 35789999999999999999999999999998765431 1126688899 99999999999999999999999 789999
Q ss_pred EEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcchH--HHHHccCCCcEEEccCCHHHH
Q 024237 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCY--AAWYASVPGLKVLSPYSSEDA 187 (270)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~~--~a~lr~iPn~~V~~P~d~~e~ 187 (270)
+++|+ .|++|++||||++ |+ +++||++++. +|.+. .+|+|| |.+ .++||+||||+|+.|+|++|+
T Consensus 431 ~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~TH-q~iedla~lR~iPn~~v~~PaD~~E~ 499 (663)
T PRK12753 431 TATFL-MFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTH-QPVEQLASLRLTPNFSTWRPCDQVEA 499 (663)
T ss_pred EEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCccc-ccHHHHHHHhcCCCCEEEccCCHHHH
Confidence 99985 5678999999986 78 5899999965 56654 599999 655 599999999999999999999
Q ss_pred HHHHHHhHh-CCCCeEEeecccccCCCCCCcccccCC---CccccCCceEEeEeCC---cEEEEEechhHHHHHHHHHHH
Q 024237 188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEIL 260 (270)
Q Consensus 188 ~~~l~~a~~-~~~P~~ir~~~~~~~~~~~~~~~~~~~---~~~~~~Gk~~vl~~G~---dvtIva~G~~v~~al~Aa~~L 260 (270)
+.+++++++ .++|+|||++|. ..| .++.. ...+..|+ +++++|+ |++||++|++|++|++|+++|
T Consensus 500 ~~~~~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L 571 (663)
T PRK12753 500 AVAWKLAIERHNGPTALILSRQ----NLA---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKL 571 (663)
T ss_pred HHHHHHHHhcCCCCEEEEecCC----CCC---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 999999998 589999998764 221 22222 13456665 8899864 999999999999999999999
Q ss_pred HhcCCCeee
Q 024237 261 AKEGISAEV 269 (270)
Q Consensus 261 ~~~Gi~~~V 269 (270)
+++||+++|
T Consensus 572 ~~~gi~~~V 580 (663)
T PRK12753 572 TAEGRNVRV 580 (663)
T ss_pred HhcCCCcEE
Confidence 999999987
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=9.8e-43 Score=346.28 Aligned_cols=211 Identities=23% Similarity=0.295 Sum_probs=180.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhH------hhhCCCCeeecccchhHHHHHHHHHhhcC-
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL------EKYGPERVLDTPITEAGFTGIGVGAAYYG- 107 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~------~~~gp~R~id~GIaE~~~vg~AaGlA~~G- 107 (270)
..++++++|+++|.+++++|++++++++|++.++.. ..+. ++| |+||||+|||||+|+|+|+|||++|
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~----~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~ 391 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNT----KIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG 391 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc----ccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence 456789999999999999999999999999754332 2233 477 8999999999999999999999999
Q ss_pred CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCcchHH--HHHccCCCcEEEccCC
Q 024237 108 LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCYA--AWYASVPGLKVLSPYS 183 (270)
Q Consensus 108 ~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~~~~~--a~lr~iPn~~V~~P~d 183 (270)
++||+++|.+ |+.|+|||||+. |+ +++||++++. .|.. +.+|+|| |+++ ++||++|||+|++|+|
T Consensus 392 ~~pv~~t~~~-F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tH-q~~edia~~r~iP~~~V~~P~d 460 (624)
T PRK05899 392 FIPFGGTFLV-FSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLTVIRPAD 460 (624)
T ss_pred CeEEEEEcHH-HHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCc-ccHHHHHHHHhCCCcEEEeCCC
Confidence 9999999865 579999999986 66 5899999965 4664 4599999 7665 8999999999999999
Q ss_pred HHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCC--CccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHH
Q 024237 184 SEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDS--SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL 260 (270)
Q Consensus 184 ~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~--~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L 260 (270)
++|++.+++++++. ++|+|||++|. ..+ .++++ .+.++.|+ +++++|+|+|||++|.|+++|++|++.|
T Consensus 461 ~~e~~~~l~~a~~~~~~P~~ir~~r~----~~~---~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L 532 (624)
T PRK05899 461 ANETAAAWKYALERKDGPSALVLTRQ----NLP---VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADEL 532 (624)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCC----CCC---CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHH
Confidence 99999999999998 89999998764 221 22222 25678886 8899999999999999999999999999
Q ss_pred HhcCCCeee
Q 024237 261 AKEGISAEV 269 (270)
Q Consensus 261 ~~~Gi~~~V 269 (270)
+++||+++|
T Consensus 533 ~~~gi~~~V 541 (624)
T PRK05899 533 EAEGIKVRV 541 (624)
T ss_pred HhcCCcEEE
Confidence 999999997
No 22
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.3e-42 Score=346.19 Aligned_cols=221 Identities=20% Similarity=0.239 Sum_probs=184.2
Q ss_pred CCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcccc-chhhHhhhCCCCeeecccchhHHHHHHHHHhh-c
Q 024237 29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI-SKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-Y 106 (270)
Q Consensus 29 ~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~-~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~-~ 106 (270)
.|.....+.++|++++++|.++++++|+++++++|++.++.+... ...|+++| |+||||+||+||||+++|+|||+ .
T Consensus 341 ~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~g 419 (653)
T TIGR00232 341 EFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHG 419 (653)
T ss_pred hhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcC
Confidence 343234678999999999999999999999999999766543110 01278899 99999999999999999999999 6
Q ss_pred CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcchHH--HHHccCCCcEEEccC
Q 024237 107 GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCYA--AWYASVPGLKVLSPY 182 (270)
Q Consensus 107 G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~~~--a~lr~iPn~~V~~P~ 182 (270)
|++||+++|+ .|++|+++|||+. |+ +++||++++. +|.+. .+|+|| |.++ ++||+||||+|+.|+
T Consensus 420 G~~p~~~tf~-~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~TH-q~iedia~lr~iPn~~v~~Pa 488 (653)
T TIGR00232 420 GFKPYGGTFL-MFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPC 488 (653)
T ss_pred CCeEEEEEhH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCccc-CCHHHHHHHhcCCCCEEEeeC
Confidence 8999999985 5678999999987 77 5899999985 46554 589999 6554 899999999999999
Q ss_pred CHHHHHHHHHHhH-hCCCCeEEeecccccCCCCCCcccccCCC-ccccCCceEEe--EeCCcEEEEEechhHHHHHHHHH
Q 024237 183 SSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAAE 258 (270)
Q Consensus 183 d~~e~~~~l~~a~-~~~~P~~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk~~vl--~~G~dvtIva~G~~v~~al~Aa~ 258 (270)
|++|++.++++++ +.++|+|||++|.. .| .+++++ ..+..|+ +++ ++|+|||||++|+|+++|++|++
T Consensus 489 D~~E~~~~~~~a~~~~~gP~~irl~r~~----~~---~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~ 560 (653)
T TIGR00232 489 DGNETAAAWKYALESQDGPTALILSRQN----LP---QLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAK 560 (653)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEcCCc----cC---CCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHH
Confidence 9999999999999 56899999988652 21 122222 4567776 777 67999999999999999999999
Q ss_pred HHHhcCCCeee
Q 024237 259 ILAKEGISAEV 269 (270)
Q Consensus 259 ~L~~~Gi~~~V 269 (270)
+|+++||+++|
T Consensus 561 ~L~~~Gi~~~V 571 (653)
T TIGR00232 561 KLAAENIKVRV 571 (653)
T ss_pred HHHhcCCcEEE
Confidence 99999999997
No 23
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=342.11 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=182.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCCCCeeecccchhHHHHHHHHHhh-cCCccEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPVV 112 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~-~G~~Pi~ 112 (270)
.++++|++++++|.++++++++++++++|++.++.+. .-...|+++| |+||||+||+||+|+++|+|||+ .|++||+
T Consensus 353 ~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~ 431 (663)
T PRK12754 353 AKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYT 431 (663)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEE
Confidence 4679999999999999999999999999998665431 1135788899 99999999999999999999999 6899999
Q ss_pred EeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcchH--HHHHccCCCcEEEccCCHHHHH
Q 024237 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCY--AAWYASVPGLKVLSPYSSEDAR 188 (270)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~~--~a~lr~iPn~~V~~P~d~~e~~ 188 (270)
++|++ |+.|++||||++ |+ +++||++++. +|.+. .+|+|| |++ .++||+||||+|+.|+|+.|+.
T Consensus 432 ~tf~~-F~~r~~~qir~~-a~--------~~l~V~~v~th~gi~~G~DG~TH-q~iEdla~lR~iPn~~V~~PaD~~E~~ 500 (663)
T PRK12754 432 STFLM-FVEYARNAVRMA-AL--------MKQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVESA 500 (663)
T ss_pred EeeHH-HHHHHHHHHHHH-HH--------cCCCeEEEEECCccccCCCCCCc-ccHHHHHHHhcCCCcEEecCCCHHHHH
Confidence 99865 577999999996 78 5899999876 56654 599999 655 4999999999999999999999
Q ss_pred HHHHHhHhC-CCCeEEeecccccCCCCCCcccccC--C-CccccCCceEEeEeCC---cEEEEEechhHHHHHHHHHHHH
Q 024237 189 GLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 189 ~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~--~-~~~~~~Gk~~vl~~G~---dvtIva~G~~v~~al~Aa~~L~ 261 (270)
.+++++++. ++|+|||++|. +.| .++. . ...+..|+ +++++|+ |++||++|++|++|++||+.|+
T Consensus 501 ~~~~~a~~~~~gP~yirl~R~----~~p---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~ 572 (663)
T PRK12754 501 VAWKYGVERQDGPTALILSRQ----NLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLT 572 (663)
T ss_pred HHHHHHHhCCCCCEEEEeCCC----CCC---CCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 999999987 79999998764 222 2221 1 13466675 8889875 9999999999999999999999
Q ss_pred hcCCCeee
Q 024237 262 KEGISAEV 269 (270)
Q Consensus 262 ~~Gi~~~V 269 (270)
++||+++|
T Consensus 573 ~~Gi~~~V 580 (663)
T PRK12754 573 AEGVKARV 580 (663)
T ss_pred hhCCCcEE
Confidence 99999987
No 24
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=329.88 Aligned_cols=227 Identities=23% Similarity=0.346 Sum_probs=190.9
Q ss_pred ceeeccCCCCCcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHH
Q 024237 17 VARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~ 96 (270)
+-.++|.+ +|+|+.+++..++|++|.++|.++++.+|++|++++|+..++.+ +-|+++| |+||||+||+||||
T Consensus 302 i~~~~~~~--~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t----d~~~~~~-p~R~i~~giaEq~m 374 (632)
T KOG0523|consen 302 IPKIWEKS--LPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT----DFFPKRF-PERFIECGIAEQNM 374 (632)
T ss_pred cCcccccc--CCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh----hhccccC-ccceEEEeeehhhh
Confidence 34455544 48999987669999999999999999999999999999876533 5577788 99999999999999
Q ss_pred HHHHHHHhhcCC-ccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCC-CCCCCCCcchH--HHHHc
Q 024237 97 TGIGVGAAYYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQHSHCY--AAWYA 171 (270)
Q Consensus 97 vg~AaGlA~~G~-~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~-~~~G~tH~~~~--~a~lr 171 (270)
+++|+|+|..|. +||+.+| +.|++|||||+|+++ . .+.++++++ .++.+ +.||||| |.+ .++||
T Consensus 375 v~ia~G~a~~g~~~Pf~~tf-~~F~trA~dqvr~~a-~--------s~~~v~~v~th~~i~~GeDGPth-~~iedlA~fr 443 (632)
T KOG0523|consen 375 VGIANGIACRGRTIPFCGTF-AAFFTRAFDQVRMGA-L--------SQANVIYVATHDSIGLGEDGPTH-QPIEDLAMFR 443 (632)
T ss_pred HHhhhchhcCCCccchhHHH-HHHHHHhhhheeehh-h--------ccCCcEEEEEeccccccCCCccc-ccHHHHHHHH
Confidence 999999999997 9999997 668999999999987 4 245555554 45655 5699999 644 49999
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHhCCC-CeEEeecccccCCCCCCcccccCCCccccCCceE-EeEeCC-cEEEEEech
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSK 248 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~~~~-P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-vl~~G~-dvtIva~G~ 248 (270)
+||||+|+.|+|.+|+..+++.|++.++ |++++.+|. +. ..++....+++|++. |+++++ ||+||++|+
T Consensus 444 siPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~----~~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs 515 (632)
T KOG0523|consen 444 SIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQ----NL----PIYNNTEIEEIGKGKYVLQEVEPDVILIGTGS 515 (632)
T ss_pred hCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCc----cc----cccCCCchhhhccccEEEecCCCCEEEEeccH
Confidence 9999999999999999999999999877 888776543 22 223344458899988 777887 999999999
Q ss_pred hHHHHHHHHHHHHhcCCCeee
Q 024237 249 IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+|++||+||+.|+++||+++|
T Consensus 516 ~v~~cl~AA~~L~~~gi~vrV 536 (632)
T KOG0523|consen 516 EVQECLEAAELLSEDGIKVRV 536 (632)
T ss_pred HHHHHHHHHHHHHhcCceEEE
Confidence 999999999999999999998
No 25
>PLN02790 transketolase
Probab=100.00 E-value=3.2e-41 Score=336.16 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=184.7
Q ss_pred cCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc
Q 024237 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY 106 (270)
Q Consensus 28 ~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~ 106 (270)
+.|..+..+.++|+++++.|.++.+.+|+++++++|+..++.++ .-+..|+++|.|+||||+||+||||+++|+|||++
T Consensus 335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~ 414 (654)
T PLN02790 335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 414 (654)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhc
Confidence 34443445689999999999999999999999999998765432 11367888833999999999999999999999996
Q ss_pred --CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCcchH--HHHHccCCCcEEEc
Q 024237 107 --GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLS 180 (270)
Q Consensus 107 --G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~~~~--~a~lr~iPn~~V~~ 180 (270)
|++||+++|..| +.|+++|||+. |+ +++||++++. +|.+ +.+|+|| |.+ .++||+||||+|+.
T Consensus 415 G~G~~P~~~tf~~F-~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~TH-q~iedla~lR~iPnl~V~~ 483 (654)
T PLN02790 415 SSGLIPYCATFFVF-TDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTH-QPIEHLASLRAMPNILMLR 483 (654)
T ss_pred CCCcEEEEEecHHH-HHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCc-ccHHHHHHhcCCCCcEEEe
Confidence 699999998654 56999999886 77 6899999975 4554 4599999 544 59999999999999
Q ss_pred cCCHHHHHHHHHHhHh-CCCCeEEeecccccCCCCCCcccccCC-CccccCCceEEeEeC-----CcEEEEEechhHHHH
Q 024237 181 PYSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGLS 253 (270)
Q Consensus 181 P~d~~e~~~~l~~a~~-~~~P~~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~G-----~dvtIva~G~~v~~a 253 (270)
|+|++|+..+++++++ .++|+|||.+|. .. +.++.+ ...++.|+ ++++++ .|++||++|+|+++|
T Consensus 484 PaD~~E~~~~l~~al~~~~gP~~irl~R~----~~---~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~A 555 (654)
T PLN02790 484 PADGNETAGAYKVAVTNRKRPTVLALSRQ----KV---PNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIA 555 (654)
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEEecCC----CC---CCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHH
Confidence 9999999999999997 579999998765 22 122222 24578887 677774 799999999999999
Q ss_pred HHHHHHHHhcCCCeee
Q 024237 254 LKAAEILAKEGISAEV 269 (270)
Q Consensus 254 l~Aa~~L~~~Gi~~~V 269 (270)
++||++|+++||+++|
T Consensus 556 l~Aa~~L~~~gi~~~V 571 (654)
T PLN02790 556 AKAAKELRKEGKKVRV 571 (654)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999999999987
No 26
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.5e-39 Score=270.79 Aligned_cols=153 Identities=29% Similarity=0.465 Sum_probs=139.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHH
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~ 120 (270)
++++++|.+++++|++++++++|++.+++ +++|+++| |+||+|+||+||+|+|+|+|||+.|++||+++| ++|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 36899999999999999999999975443 48899999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCC-CCCCCCc-chHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC
Q 024237 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (270)
Q Consensus 121 ~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~-~~G~tH~-~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~ 197 (270)
+|++||||+++|+ +++||++++++ |... .+|+||+ +++++++|++||++|++|+|++|++.++++++++
T Consensus 75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999998 58999999875 4544 5999994 4778999999999999999999999999999999
Q ss_pred CCCeEEeecc
Q 024237 198 PDPVVFLENE 207 (270)
Q Consensus 198 ~~P~~ir~~~ 207 (270)
++|+|||++|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999999753
No 27
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=7.6e-37 Score=308.16 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=183.6
Q ss_pred ccchHHHHHHHHHHHHhhc---CCcEEEEecCCCCCCCccc---------------------cchhhHhhhCCCCeeecc
Q 024237 35 KQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYK---------------------ISKGLLEKYGPERVLDTP 90 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~---d~~iv~l~~Dl~~~~g~~~---------------------~~~~~~~~~gp~R~id~G 90 (270)
++++++.||++.|.++++. +++||.+.+|++.+.+.-+ ....|+++| |+||||+|
T Consensus 493 ~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~G 571 (891)
T PRK09405 493 REISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQEG 571 (891)
T ss_pred CcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEec
Confidence 6799999999999999996 8999999999987655411 124578899 99999999
Q ss_pred cchhHHHH--HHHHHhhc----CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCC-CCCCCCC
Q 024237 91 ITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQH 162 (270)
Q Consensus 91 IaE~~~vg--~AaGlA~~----G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~-~~~G~tH 162 (270)
|+||||++ +|+|+|++ |++||+++|++|.++|++||||+++|+ ++.++++++.. |.+ .+.|.+|
T Consensus 572 IAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~qH 643 (891)
T PRK09405 572 INEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGLQH 643 (891)
T ss_pred hhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCcccC
Confidence 99999999 99999998 889999999777689999999999998 58899998765 454 4589999
Q ss_pred c-chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCC--CeEEeecccccCCCCCCcccccCCCccccCCce-EE
Q 024237 163 S-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA-KI 234 (270)
Q Consensus 163 ~-~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~--P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~-~v 234 (270)
+ ..+..++|+||||+|+.|+|+.|++.+++++++ ..+ |+|+|.. ..+++. +..+ +++.+.+||. ++
T Consensus 644 qdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~----ne~~~~-~~~p-e~~~~~igKg~y~ 717 (891)
T PRK09405 644 EDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM----NENYHQ-PAMP-EGAEEGILKGMYK 717 (891)
T ss_pred CchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC----CCCCCC-CCCC-cccccccceEEEE
Confidence 3 345589999999999999999999999999876 455 7778753 111111 1122 4567889996 99
Q ss_pred eEeCC------cEEEEEechhHHHHHHHHHHHHh-cCCCeee
Q 024237 235 EREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEV 269 (270)
Q Consensus 235 l~~G~------dvtIva~G~~v~~al~Aa~~L~~-~Gi~~~V 269 (270)
+++|+ ||+|+++|.|+++||+||++|++ +||+++|
T Consensus 718 Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V 759 (891)
T PRK09405 718 LETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADV 759 (891)
T ss_pred eccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEE
Confidence 99987 89999999999999999999998 7999987
No 28
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.2e-37 Score=263.01 Aligned_cols=166 Identities=35% Similarity=0.574 Sum_probs=133.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcC--CccEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV 112 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G--~~Pi~ 112 (270)
+|++|+++++++|.+++++|++++++++|++ ++++..+.++...+||+||||+||+||+|+|+|+|||+.| ++||+
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~ 78 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE 78 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence 4789999999999999999999999999997 4445444556667778899999999999999999999999 56666
Q ss_pred EeehhhHHH----HHHHHHHHHHhhccccCCCCCCCCEEEEecCCC-CCCCCCCC-cchHHHHHccCCCcEEEccCCHHH
Q 024237 113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED 186 (270)
Q Consensus 113 ~~~~~~f~~----ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~-~~~~G~tH-~~~~~a~lr~iPn~~V~~P~d~~e 186 (270)
.+| +.|+. |++||+++++++. +.||.+....|. .+++|+|| +++++++|+++|||+|++|+|++|
T Consensus 79 ~~f-~~F~~~~q~r~~~~~~~~~~~~--------~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e 149 (178)
T PF02779_consen 79 STF-ADFLTPAQIRAFDQIRNDMAYG--------QLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE 149 (178)
T ss_dssp EEE-GGGGGGGHHHHHHHHHHHHHHH--------TS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred eec-cccccccchhhhhhhhhhhhcc--------cceecceeecCcccccccccccccccccccccccccccccCCCHHH
Confidence 665 55666 9999999999885 455553333343 34578887 478899999999999999999999
Q ss_pred HHHHHHHhHh--CCCCeEEeecccccC
Q 024237 187 ARGLLKAAIR--DPDPVVFLENELLYG 211 (270)
Q Consensus 187 ~~~~l~~a~~--~~~P~~ir~~~~~~~ 211 (270)
++.+++++++ +++|+|||++|.+++
T Consensus 150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 150 AKGLLRAAIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence 9999999999 789999999987653
No 29
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=4.8e-36 Score=302.29 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=178.1
Q ss_pred cccchHHHHHHHHHHHHhhc---CCcEEEEecCCCCCCCcccc---------------------chhhHhhhCCCCeeec
Q 024237 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT 89 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~---d~~iv~l~~Dl~~~~g~~~~---------------------~~~~~~~~gp~R~id~ 89 (270)
.+.++++.||++.|.++++. .++||.+.+|.+.+.|.-++ ...+++.+ |+||||+
T Consensus 487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~ 565 (889)
T TIGR03186 487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE 565 (889)
T ss_pred CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence 36799999999997776664 57899999999877632111 23467888 9999999
Q ss_pred ccchhHHHH--HHHHHhhc----CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCC-C-CCCCC
Q 024237 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-A-AGVGA 160 (270)
Q Consensus 90 GIaE~~~vg--~AaGlA~~----G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~-~-~~~G~ 160 (270)
||+||||++ +|+|+|++ |++||+++|++|.++|++|||+++ |+ ++.++++++. .|. + +++|.
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEGL 636 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCcc
Confidence 999999999 99999998 889999998777679999999998 77 4777777765 465 3 45899
Q ss_pred CCc-chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh------CCCCeEEeecccccCCCCCCcccccCCC-ccccCCc-
Q 024237 161 QHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK- 231 (270)
Q Consensus 161 tH~-~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~------~~~P~~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk- 231 (270)
||+ ..+.+++|+||||+|+.|+|+.|++.+++++++ .++|+|||..+. +++. +.+++++ ..++.|+
T Consensus 637 tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~----~~~~-p~~~~~~~~~~~~gi~ 711 (889)
T TIGR03186 637 QHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNE----NYAQ-PSLPEDRLDAVRRGIL 711 (889)
T ss_pred cccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC----CCCC-CCcCCCcccchhcchh
Confidence 992 344599999999999999999999999999777 578999997654 2211 2333333 2355554
Q ss_pred -e-EEeE----eCCcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 232 -A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 232 -~-~vl~----~G~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
+ ++++ +|+||+|+++|.|+++|++||++|+++ ||+++|
T Consensus 712 kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V 756 (889)
T TIGR03186 712 KGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAV 756 (889)
T ss_pred heeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEE
Confidence 5 7888 578999999999999999999999997 999987
No 30
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2e-35 Score=298.73 Aligned_cols=220 Identities=18% Similarity=0.201 Sum_probs=178.9
Q ss_pred cccchHHHHHHHHHHHHhhc---CCcEEEEecCCCCCCCcccc---------------------chhhHhhhCCCCeeec
Q 024237 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT 89 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~---d~~iv~l~~Dl~~~~g~~~~---------------------~~~~~~~~gp~R~id~ 89 (270)
..++++|.+|++.|.++++. +++||.+++|++.+.|.-++ ...|+++| |+|||++
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~ 578 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEE 578 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEec
Confidence 36799999999999999988 99999999999865533111 13467889 9999999
Q ss_pred ccchhHHHH--HHHHHhhc----CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCC-CC-CCCCCC
Q 024237 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AA-AGVGAQ 161 (270)
Q Consensus 90 GIaE~~~vg--~AaGlA~~----G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G-~~-~~~G~t 161 (270)
||+||+|++ +|+|+|.+ |++||+.+|+.|-.+|++||+++++++ +..++++++.+| .+ +++|+|
T Consensus 579 GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~T 650 (896)
T PRK13012 579 GITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGLQ 650 (896)
T ss_pred chhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCCC
Confidence 999999999 99999777 679999999877689999999999886 467788887754 44 469999
Q ss_pred CcchH--HHHHccCCCcEEEccCCHHHHHHHHHHhHh----C--CCCeEEeecccccCCCCCCcccccCC-CccccCCce
Q 024237 162 HSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA 232 (270)
Q Consensus 162 H~~~~--~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~--~~P~~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~ 232 (270)
| |+. .+++|+||||+|+.|+|+.|+..+++.+++ . +.|+|||..|. +++. +.++++ +..+..|+
T Consensus 651 H-Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~----~~~~-p~~~~~~~~~i~kG~- 723 (896)
T PRK13012 651 H-QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNE----NYAQ-PALPEGAEEGILKGM- 723 (896)
T ss_pred C-cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCC----CCCC-CCCCccchhccccCc-
Confidence 9 655 489999999999999999999999999773 2 67999997654 2221 223332 34566777
Q ss_pred EEeE---eCCcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 233 KIER---EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 233 ~vl~---~G~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
++++ +|+|++|+++|+++++|++||++|+++ ||+++|
T Consensus 724 y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V 764 (896)
T PRK13012 724 YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADV 764 (896)
T ss_pred EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEE
Confidence 5553 467999999999999999999999999 999987
No 31
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=100.00 E-value=6.8e-33 Score=232.89 Aligned_cols=155 Identities=37% Similarity=0.556 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHhhcCC-cEEEEecCCCCCCCccccchhhHhhhCCC-------CeeecccchhHHHHHHHHHhhcCCc
Q 024237 38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (270)
Q Consensus 38 ~~~~a~~~~L~~~~~~d~-~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-------R~id~GIaE~~~vg~AaGlA~~G~~ 109 (270)
+++++++++|.+++++|+ +++++++|++.++++ . ..+.| |+ ||+|+||+||+|+++|+|||++|++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~ 74 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR 74 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence 478999999999999965 999999999765433 1 13455 55 5999999999999999999999999
Q ss_pred cEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC-CCCCCCC-cchHHHHHccCCCcEEEccCCHHHH
Q 024237 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA 187 (270)
Q Consensus 110 Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~-~~~G~tH-~~~~~a~lr~iPn~~V~~P~d~~e~ 187 (270)
||++++++|+ .|++||+++++++ .++|+++....|.. +++|+|| +++++++|++|||++|++|+|+.|+
T Consensus 75 pi~~~~~~f~-~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 75 PVVAIFFTFF-DRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred cEEEeeHHHH-HHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 9999996655 5999999999875 26888888765544 4579877 4677899999999999999999999
Q ss_pred HHHHHHhHhC-CCCeEEeecc
Q 024237 188 RGLLKAAIRD-PDPVVFLENE 207 (270)
Q Consensus 188 ~~~l~~a~~~-~~P~~ir~~~ 207 (270)
+.+++++++. ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 6799998653
No 32
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-31 Score=258.79 Aligned_cols=222 Identities=20% Similarity=0.259 Sum_probs=185.2
Q ss_pred CCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhH-hhhCCCCeeecccchhHHHHHHHHHhhc
Q 024237 29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYY 106 (270)
Q Consensus 29 ~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~-~~~gp~R~id~GIaE~~~vg~AaGlA~~ 106 (270)
.|......+.+|.+.+++|..+.++.|+++..++||+.++.+. +-...|. ++| +.|+|..||+|.+|.+++.|||++
T Consensus 346 ~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialh 424 (663)
T COG0021 346 KFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALH 424 (663)
T ss_pred hhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHh
Confidence 3333323488999999999999999999999999999887654 1123344 567 899999999999999999999999
Q ss_pred C-CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCcchHH--HHHccCCCcEEEcc
Q 024237 107 G-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCYA--AWYASVPGLKVLSP 181 (270)
Q Consensus 107 G-~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~~~~~--a~lr~iPn~~V~~P 181 (270)
| ++||..+|.. |+.+++.++|+.+ + +++|++++.. |++. ++||||| |++| +.||+|||+.|+.|
T Consensus 425 Gg~~pyggTFlv-FsdY~r~AiRlaA-L--------m~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~RP 493 (663)
T COG0021 425 GGFIPYGGTFLV-FSDYARPAVRLAA-L--------MGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVIRP 493 (663)
T ss_pred cCceeecceehh-hHhhhhHHHHHHH-h--------cCCCeEEEEecCceecCCCCCCC-CcHHHHHHhhccCCceeEec
Confidence 6 6999999855 6999999999855 5 5899999975 6665 4599999 8887 99999999999999
Q ss_pred CCHHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEe----CCcEEEEEechhHHHHHHH
Q 024237 182 YSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE----GKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 182 ~d~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~----G~dvtIva~G~~v~~al~A 256 (270)
+|++|+..+++.+++. ++|+++.++| ++.| .++.++......+++|+++ ..|++||++|+.|+.|++|
T Consensus 494 aD~~Et~~aw~~Al~~~~gPt~LiltR----Qnlp---~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~A 566 (663)
T COG0021 494 ADANETAAAWKYALERKDGPTALILTR----QNLP---VLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEA 566 (663)
T ss_pred CChHHHHHHHHHHHhcCCCCeEEEEec----CCCC---ccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHH
Confidence 9999999999999985 8899998654 4544 3334444445567888887 4799999999999999999
Q ss_pred HHHHHhcCCCeee
Q 024237 257 AEILAKEGISAEV 269 (270)
Q Consensus 257 a~~L~~~Gi~~~V 269 (270)
++.|+++|+.++|
T Consensus 567 a~~L~~~~~~vrV 579 (663)
T COG0021 567 AKELEAEGIKVRV 579 (663)
T ss_pred HHHHHhcCCceEE
Confidence 9999988999987
No 33
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.97 E-value=5.7e-31 Score=266.98 Aligned_cols=225 Identities=23% Similarity=0.256 Sum_probs=186.1
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCC--------------CCCccccchhhHhhhCCCCeeecccchhHHHHHHH
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~--------------~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~Aa 101 (270)
.++|..|...+|.+++++|++|+++++|++. .+++|+.+++|.++||++|++|++|+|.+++|++.
T Consensus 585 ~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~ 664 (929)
T TIGR00239 585 LFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEY 664 (929)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHH
Confidence 4789999999999999999999999999986 56667889999999999999999999999999999
Q ss_pred HHhhcCCcc--EEEeehhhHHH---HHHHHHHHH-HhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHH--ccC
Q 024237 102 GAAYYGLKP--VVEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--ASV 173 (270)
Q Consensus 102 GlA~~G~~P--i~~~~~~~f~~---ra~dqi~~~-~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~l--r~i 173 (270)
|+|+.|.+| +++.||.+|+. .++||+.+. .+++++||| ++++.+.|..+..+.+||+++|++| .+.
T Consensus 665 G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~lql~~~ 738 (929)
T TIGR00239 665 GYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG------LVMLLPHGYEGQGPEHSSGRLERFLQLAAE 738 (929)
T ss_pred hHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCCchhhccCHHHHHHHhCC
Confidence 999999777 59999999998 669999988 577776654 8999998854444556678999999 899
Q ss_pred CCcEEEccCCHHHHHHHHH-HhHhC-CCCeEEeecccccCCCCCCc--ccccCCCccccCCceEEeEeC-----CcEE-E
Q 024237 174 PGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFPVS--AEVLDSSFCLPIGKAKIEREG-----KDVT-I 243 (270)
Q Consensus 174 Pn~~V~~P~d~~e~~~~l~-~a~~~-~~P~~ir~~~~~~~~~~~~~--~~~~~~~~~~~~Gk~~vl~~G-----~dvt-I 243 (270)
|||+|+.|++|.|++.+|+ +++++ ++|+++.+||.||+.+...+ .+++++.|..+++. +.++| .+++ |
T Consensus 739 ~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~--~~~~~~~~~~~~v~~v 816 (929)
T TIGR00239 739 QNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGE--IEESGLSLDPEGVKRL 816 (929)
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCccccccc--ccccccccCccCCcEE
Confidence 9999999999999999999 79987 89999999999997542111 24566666666643 23222 2555 5
Q ss_pred EEechhHHHHHHHHHHHHhcCCCeee
Q 024237 244 TAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 244 va~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
|.|+.++..+|++ +.++++|++++|
T Consensus 817 v~~sg~v~~~l~~-~~~~~~~~~v~i 841 (929)
T TIGR00239 817 VLCSGKVYYDLHE-QRRKNGQKDVAI 841 (929)
T ss_pred EEECchHHHHHHH-HHHhcCCCCEEE
Confidence 5555588888888 677878999987
No 34
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.97 E-value=2.4e-30 Score=263.30 Aligned_cols=226 Identities=22% Similarity=0.231 Sum_probs=187.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCC--------------CCCccccchhhHhhhCCCCeeecccchhHHHHHH
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~--------------~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~A 100 (270)
..++|..|...++..++++|++|+++++|++. .+|.|+.+++|.++||++|++|++|+|.+++|++
T Consensus 582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~ 661 (924)
T PRK09404 582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFE 661 (924)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHH
Confidence 45789999999999999999999999999975 6789999999999999999999999999999999
Q ss_pred HHHhhcCCcc--EEEeehhhHHH---HHHHHHHHHH-hhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccC-
Q 024237 101 VGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV- 173 (270)
Q Consensus 101 aGlA~~G~~P--i~~~~~~~f~~---ra~dqi~~~~-a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~i- 173 (270)
.|+|+.|.+| |++.||.+|.. .++||+.+++ +++++++ +++++.|.|..+..+.+||+++|++|.+.
T Consensus 662 ~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~~ 735 (924)
T PRK09404 662 YGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLCA 735 (924)
T ss_pred HHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhCC
Confidence 9999999965 99999999999 5699999886 7766554 49999998854334445567999999665
Q ss_pred -CCcEEEccCCHHHHHHHHHHh-HhC-CCCeEEeecccccCCCCCCc--ccccCCCccccCCceEEeEeCCcE--EEEEe
Q 024237 174 -PGLKVLSPYSSEDARGLLKAA-IRD-PDPVVFLENELLYGESFPVS--AEVLDSSFCLPIGKAKIEREGKDV--TITAF 246 (270)
Q Consensus 174 -Pn~~V~~P~d~~e~~~~l~~a-~~~-~~P~~ir~~~~~~~~~~~~~--~~~~~~~~~~~~Gk~~vl~~G~dv--tIva~ 246 (270)
|||+|+.|++|.|+..+|+.+ +++ ++|+++.+||.||+.+...+ .++++..+..+++++. .++|+|| |||++
T Consensus 736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~ 814 (924)
T PRK09404 736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCS 814 (924)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEc
Confidence 799999999999999999986 466 49999999999997532111 2344444555666665 6788899 79999
Q ss_pred chhHHHHHHHHHHHHhcCCCeee
Q 024237 247 SKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
|.+++.++++++++... +++|
T Consensus 815 Gk~~~~~~~a~~~~~~~--~v~i 835 (924)
T PRK09404 815 GKVYYDLLEARRKRGID--DVAI 835 (924)
T ss_pred CHHHHHHHHHHHhCCCC--CEEE
Confidence 99999999999866543 5554
No 35
>PRK05261 putative phosphoketolase; Provisional
Probab=99.83 E-value=2e-19 Score=180.42 Aligned_cols=219 Identities=14% Similarity=0.086 Sum_probs=159.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCc-EEEEecCCCCCCCccccchh-------------hHhhhCCCCeeecccchhHHHHHH
Q 024237 35 KQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKG-------------LLEKYGPERVLDTPITEAGFTGIG 100 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~-iv~l~~Dl~~~~g~~~~~~~-------------~~~~~gp~R~id~GIaE~~~vg~A 100 (270)
...+++. +++.|.++++.||+ ++++++|...|+.+..+.+. ..... ..|+++ +++|++|.|++
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWL 465 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHH
Confidence 3567888 99999999999999 88899999876654222110 01122 369999 99999999999
Q ss_pred HHHhhcCCccEEEeehhhHH--HHHHHHH----HHHHhhccccCCCCCCCCEEEEecCCCCC-CCCCCCcch---HH--H
Q 024237 101 VGAAYYGLKPVVEFMTFNFS--MQAIDHI----INSAAKSNYMSSGQISVPIVFRGPNGAAA-GVGAQHSHC---YA--A 168 (270)
Q Consensus 101 aGlA~~G~~Pi~~~~~~~f~--~ra~dqi----~~~~a~~~~~sg~~~~~pvi~~~~~G~~~-~~G~tH~~~---~~--a 168 (270)
.|+++.|.++++.+|.+|.. ..++.|+ |.. ....|+..- ..++.+ .+++.... .+|.|| |. ++ +
T Consensus 466 ~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~~-~sLn~l-~Ts~~~~qghNG~TH-Q~Pg~ie~l~ 541 (785)
T PRK05261 466 EGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA-REIPWRKPI-PSLNYL-LTSHVWRQDHNGFSH-QDPGFIDHVA 541 (785)
T ss_pred HHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCC-cceeEE-eecceeecCCCCCCC-CCchHHHHHH
Confidence 99999999999999876542 6777777 654 234454221 123322 23445444 499999 76 54 5
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCC---ccccCCceEEeE--e-----
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIER--E----- 237 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~---~~~~~Gk~~vl~--~----- 237 (270)
-+|+ |++.|+.|+|.+|+..+++.|+++ ++|.+|..+|. +.| .....+ ..+..| ++++. +
T Consensus 542 ~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ----~lp---~~~~~~~a~~~~~kG-ayi~~~a~~~~~~ 612 (785)
T PRK05261 542 NKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQ----PRP---QWLSMDEARKHCTKG-LGIWDWASNDDGE 612 (785)
T ss_pred hcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCC----CCc---ccCChHHHHHhccCc-eEEEEeccCCCCC
Confidence 6778 999999999999999999999986 67999986653 222 111111 234455 45554 2
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhc--CCCeee
Q 024237 238 GKDVTITAFSKIVGL-SLKAAEILAKE--GISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v~~-al~Aa~~L~~~--Gi~~~V 269 (270)
..||+|+++|+++.. |++|+++|+++ |++++|
T Consensus 613 ~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRV 647 (785)
T PRK05261 613 EPDVVLACAGDVPTLETLAAADLLREHFPDLKIRV 647 (785)
T ss_pred CCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEE
Confidence 259999999999987 99999999999 999987
No 36
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.49 E-value=1.4e-12 Score=131.80 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=153.2
Q ss_pred ccchHHHHHHHHHHHHhhcC---CcEEEEecCCCCCCCccccchh---------------------hHhhhCCCCeeecc
Q 024237 35 KQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGAYKISKG---------------------LLEKYGPERVLDTP 90 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d---~~iv~l~~Dl~~~~g~~~~~~~---------------------~~~~~gp~R~id~G 90 (270)
+.+|+..+|.+.|.++++.. ++||-+.+|.+.+.|.-++... .++.- ..|+++.|
T Consensus 487 ~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~-~Gq~le~G 565 (885)
T TIGR00759 487 REVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESK-DGQILQEG 565 (885)
T ss_pred CCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCC-CCcchhhh
Confidence 57999999999999999863 5799999998765443211111 01111 35999999
Q ss_pred cchhHHHH--HHHHHhhc--C--CccEEEeehhhH-HHHHHHHHHHHHhhccccCCCCCCCCEEEE-ecCCC-C-CCCCC
Q 024237 91 ITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFR-GPNGA-A-AGVGA 160 (270)
Q Consensus 91 IaE~~~vg--~AaGlA~~--G--~~Pi~~~~~~~f-~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~-~~~G~-~-~~~G~ 160 (270)
|+|.++++ +|+|.|.. | ++||... |+.| .+|..|.+ ..+|. +...-.++ ++.|. + .+.|-
T Consensus 566 I~E~g~~~~~~aagtsys~~g~~miP~yi~-YsmFgfqR~gD~~-waa~d--------~~argfl~g~taGrtTL~gEGl 635 (885)
T TIGR00759 566 INEAGAMASWIAAATSYATHGEPMIPFYIY-YSMFGFQRIGDLC-WAAAD--------QRARGFLLGATAGRTTLNGEGL 635 (885)
T ss_pred hhhHHHHHHHHHHHhHHhhCCCeeeeeeEe-eccccccchHHHH-HHHhh--------hcCCceEeccCCCcccCCCccc
Confidence 99999986 46666654 5 7898855 4667 99999988 45776 34444444 45676 3 35777
Q ss_pred CCcchHH--HHHccCCCcEEEccCCHHHHHHHHHHhHhC----CCCeEEeecccccCCCCCCcccccCCC-ccccCCceE
Q 024237 161 QHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAK 233 (270)
Q Consensus 161 tH~~~~~--a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~----~~P~~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk~~ 233 (270)
.| |... .+-..+||+.-+.|+...|+..+++..++. +..+|++++. +.++++. +..++.- ..+-.| .+
T Consensus 636 qH-qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~--~ne~~~q-p~~p~~~~egIlkG-~Y 710 (885)
T TIGR00759 636 QH-EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTV--MNENYVQ-PPMPEGAEEGILKG-LY 710 (885)
T ss_pred cC-ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEe--cCCCCCC-CCCCcchHHhHHhC-ce
Confidence 77 5554 677899999999999999999999987763 5577777652 2233321 1122211 112233 44
Q ss_pred EeEe------CCcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 234 IERE------GKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 234 vl~~------G~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
.+++ +.+|.|+++|..+++|++||++|+++ ||.++|
T Consensus 711 ~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adV 753 (885)
T TIGR00759 711 RFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDV 753 (885)
T ss_pred ecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcE
Confidence 5554 23799999999999999999999986 999887
No 37
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.33 E-value=3.2e-11 Score=98.83 Aligned_cols=117 Identities=30% Similarity=0.329 Sum_probs=90.8
Q ss_pred hhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCC
Q 024237 80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGV 158 (270)
Q Consensus 80 ~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~ 158 (270)
+. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++.+++++|. +++. .++||+++..+ +.....
T Consensus 32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~--------~~~Pvl~i~~~~~~~~~~ 101 (154)
T cd06586 32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAA--------EHLPVVFLIGARGISAQA 101 (154)
T ss_pred cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHh--------cCCCEEEEeCCCChhhhc
Confidence 45 8999999999999999999999998888888875677889999998 4544 47999999764 333323
Q ss_pred CCCC-cchHHHHHccCCCcEEEccCCHHHHHHHHHH---hHhCCCCeEEeec
Q 024237 159 GAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA---AIRDPDPVVFLEN 206 (270)
Q Consensus 159 G~tH-~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~---a~~~~~P~~ir~~ 206 (270)
+.+| .+.+.++++.+|++.+..|++.++.+.+.+. +....+|+||+++
T Consensus 102 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 102 KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 4444 3455699999999999999888776655544 3345789999754
No 38
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.18 E-value=7.7e-10 Score=108.60 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=159.3
Q ss_pred hhhhcCCCCccee--eccCCCCCc-----CCccc-cccchHHHHHHHHHHHHhhcC---CcEEEEecCCCCCCCccccch
Q 024237 7 QKVAAGGGSPVAR--IRPVVSNLR-----NYSSA-VKQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGAYKISK 75 (270)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~-~~~~~~~~a~~~~L~~~~~~d---~~iv~l~~Dl~~~~g~~~~~~ 75 (270)
++-+.||--|+-| |.|+...|. ..-.+ ++.+|+..||.+.|.++++++ ++||-+.+|.+.+.|.-++..
T Consensus 454 rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~ 533 (887)
T COG2609 454 RRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFR 533 (887)
T ss_pred HHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhh
Confidence 3445566666644 345555552 11112 235999999999999999954 589999999876544211100
Q ss_pred h---------------------hHhhhCCCCeeecccchhHHHH--HHHHHhhc--C--CccEEEeehhhH-HHHHHHHH
Q 024237 76 G---------------------LLEKYGPERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SMQAIDHI 127 (270)
Q Consensus 76 ~---------------------~~~~~gp~R~id~GIaE~~~vg--~AaGlA~~--G--~~Pi~~~~~~~f-~~ra~dqi 127 (270)
. .++.- ..|+++.||.|.++++ +|+|.+.. | ++||... |+-| .+|..|-+
T Consensus 534 q~GIy~~~GQ~y~p~d~~~~~~ykea~-~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgfqRigD~~ 611 (887)
T COG2609 534 QIGIYNPNGQQYTPQDRDQVMYYKEAE-SGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGFQRIGDLL 611 (887)
T ss_pred hcccccCCCccCCccchhhhhhhhhCC-CcchHHhhhccccHHHHHHHHhcccccCCccceeeeee-echhhhhhHHHHH
Confidence 0 11111 2589999999999986 56777664 4 7888754 5666 89999988
Q ss_pred HHHHhhccccCCCCCCCC-EEEEec-CCCC-CCCCCCCcchHH--HHHccCCCcEEEccCCHHHHHHHHHHhHhC-----
Q 024237 128 INSAAKSNYMSSGQISVP-IVFRGP-NGAA-AGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD----- 197 (270)
Q Consensus 128 ~~~~a~~~~~sg~~~~~p-vi~~~~-~G~~-~~~G~tH~~~~~--a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~----- 197 (270)
+.+|. +... .++.+. ++.+ .+.|-.| +... -+-..+||+.-+.|+...|+.-+++..++.
T Consensus 612 -waA~d--------q~ARgFLlgaTagrtTLngEGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~ 681 (887)
T COG2609 612 -WAAGD--------QDARGFLLGATAGRTTLNGEGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEG 681 (887)
T ss_pred -HHHHh--------hhhcceeEeecCCCceeCcccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccC
Confidence 56776 3444 445443 3333 3566667 4443 345679999999999999999999998763
Q ss_pred --CCCeEEeecccccCCCCCCcccccCC-CccccCCceEEeEe-----CCcEEEEEechhHHHHHHHHHHHHh-cCCCee
Q 024237 198 --PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIERE-----GKDVTITAFSKIVGLSLKAAEILAK-EGISAE 268 (270)
Q Consensus 198 --~~P~~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~-----G~dvtIva~G~~v~~al~Aa~~L~~-~Gi~~~ 268 (270)
+.-.||+.. .++++. |..|.. +..+..| .+.++. +.+|.|+++|..+++|++|++.|++ .|+.+.
T Consensus 682 qe~v~yYlt~~----ne~~~q-Pamp~gae~gI~kG-~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~ad 755 (887)
T COG2609 682 QENVFYYITLS----NENYPQ-PAMPEGAEEGIIKG-IYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEAD 755 (887)
T ss_pred cCCcEEEEEec----cCcCCC-CCCCCcchhhhhhc-eeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccC
Confidence 235666642 222321 222221 1223333 344442 3689999999999999999999998 588776
Q ss_pred e
Q 024237 269 V 269 (270)
Q Consensus 269 V 269 (270)
|
T Consensus 756 l 756 (887)
T COG2609 756 L 756 (887)
T ss_pred e
Confidence 5
No 39
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=7.7e-09 Score=101.84 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=139.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCc-EEEEecCCCCCCCccccchhhHhh-----------hCC-CCeeecccchhHHHHHHH
Q 024237 35 KQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEK-----------YGP-ERVLDTPITEAGFTGIGV 101 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~-iv~l~~Dl~~~~g~~~~~~~~~~~-----------~gp-~R~id~GIaE~~~vg~Aa 101 (270)
.+..-..++++-|.++++.|++ ..+.++|-.++++..++.+..... ..| .|+++ .++|+.+.|.+.
T Consensus 399 ~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwle 477 (793)
T COG3957 399 VTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLE 477 (793)
T ss_pred cchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHH
Confidence 3455667899999999999988 999999977665543332222111 123 38888 999999999999
Q ss_pred HHhhcCCccEEEeehhhHHHHHHHHHHHHHhhc-------cccCCCCCCCCEEEEecCCC-CC-CCCCCCcchH---HHH
Q 024237 102 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS-------NYMSSGQISVPIVFRGPNGA-AA-GVGAQHSHCY---AAW 169 (270)
Q Consensus 102 GlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~-------~~~sg~~~~~pvi~~~~~G~-~~-~~G~tH~~~~---~a~ 169 (270)
|+++.|.+-++++|-+|. . ..|-+.|+.+++ .|+..- ..++.++ ..+. -+ .+|-|| |.. +.+
T Consensus 478 gy~LtGr~glf~sYEaF~-~-iv~sm~nQh~kwl~v~~e~~wr~~~-~Sln~l~--TS~vw~QdhNGfsH-QdPgf~~~~ 551 (793)
T COG3957 478 GYLLTGRHGLFASYEAFA-H-IVDSMFNQHAKWLKVTREVEWRRPI-PSLNYLL--TSHVWRQDHNGFSH-QDPGFIDHV 551 (793)
T ss_pred HHHhcCCccceeeHHHHH-H-HHHHHHhhhHHHHHHHHhcccCCCC-Cccccee--ehhhhhcccCCCcc-CCchHHHHH
Confidence 999999999999986643 2 233333333322 333211 1233333 2222 23 488999 533 355
Q ss_pred HccCCC-cEEEccCCHHHHHHHHHHhHhCCCCeEE-eecccccCCCCCCcccccCCCccccCC--ceEEeE--eC-CcEE
Q 024237 170 YASVPG-LKVLSPYSSEDARGLLKAAIRDPDPVVF-LENELLYGESFPVSAEVLDSSFCLPIG--KAKIER--EG-KDVT 242 (270)
Q Consensus 170 lr~iPn-~~V~~P~d~~e~~~~l~~a~~~~~P~~i-r~~~~~~~~~~~~~~~~~~~~~~~~~G--k~~vl~--~G-~dvt 242 (270)
+.-.++ +.|+.|.|.+-+..++.+|+++.+-+.+ -.+|....+.+. .........-| -++... +| .||+
T Consensus 552 ~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t----~~qA~~~~~~G~~iwewas~d~gepdvV 627 (793)
T COG3957 552 ANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLT----MEQAEKHCTDGAGIWEWASGDDGEPDVV 627 (793)
T ss_pred HhhccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeec----HHHHHHHhhcCcEEEEeccCCCCCCCEE
Confidence 555555 5899999999999999999987653333 233321100000 00001111222 222222 23 3799
Q ss_pred EEEechh-HHHHHHHHHHHHhcC--CCeee
Q 024237 243 ITAFSKI-VGLSLKAAEILAKEG--ISAEV 269 (270)
Q Consensus 243 Iva~G~~-v~~al~Aa~~L~~~G--i~~~V 269 (270)
+.+.|.+ +.++++|+++|++++ ..++|
T Consensus 628 ~A~~Gd~~t~e~laAa~~L~e~~p~l~vRv 657 (793)
T COG3957 628 MACAGDVPTIEVLAAAQILREEGPELRVRV 657 (793)
T ss_pred EEecCCcchHHHHHHHHHHHHhCccceEEE
Confidence 9999985 579999999999998 66654
No 40
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.89 E-value=1.4e-07 Score=88.41 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=117.6
Q ss_pred HhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC
Q 024237 78 LEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG 157 (270)
Q Consensus 78 ~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~ 157 (270)
.+++ ...|++ .-.|...+++|.|.|..|.|.++.+ +...+...+++|-.-. - ..+|++++.....+.+
T Consensus 44 ~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taT-Sg~Gl~lm~E~l~~a~-~--------~e~P~v~v~v~R~~p~ 111 (352)
T PRK07119 44 LPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTSS-SSPGISLKQEGISYLA-G--------AELPCVIVNIMRGGPG 111 (352)
T ss_pred HHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeec-CcchHHHHHHHHHHHH-H--------ccCCEEEEEeccCCCC
Confidence 3445 356777 9999999999999999999999988 5677888899996533 2 4799888754322222
Q ss_pred CCCCCc-chHHHHH-cc----CCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeeccccc--CCCCCCcc--cc--c
Q 024237 158 VGAQHS-HCYAAWY-AS----VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY--GESFPVSA--EV--L 221 (270)
Q Consensus 158 ~G~tH~-~~~~a~l-r~----iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~~~~~--~~~~~~~~--~~--~ 221 (270)
.|.++. |.|.-+. +. --++.++.|+|++|+..+...|++ ..-|++++.+.-+. .+++...+ .+ .
T Consensus 112 ~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~ 191 (352)
T PRK07119 112 LGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLP 191 (352)
T ss_pred CCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccC
Confidence 334442 4443222 21 235899999999999998888765 46699998643221 01110000 00 0
Q ss_pred CCCcc-ccC------------------------------------CceEEeE-eCCcEEEEEechhHHHHHHHHHHHHhc
Q 024237 222 DSSFC-LPI------------------------------------GKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKE 263 (270)
Q Consensus 222 ~~~~~-~~~------------------------------------Gk~~vl~-~G~dvtIva~G~~v~~al~Aa~~L~~~ 263 (270)
..++. ... ...+... ++.|++||++|+++..|++|++.|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~ 271 (352)
T PRK07119 192 PKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREE 271 (352)
T ss_pred CCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHc
Confidence 00000 000 0001111 357999999999999999999999999
Q ss_pred CCCeee
Q 024237 264 GISAEV 269 (270)
Q Consensus 264 Gi~~~V 269 (270)
|+++.|
T Consensus 272 Gi~v~v 277 (352)
T PRK07119 272 GIKVGL 277 (352)
T ss_pred CCeEEE
Confidence 999876
No 41
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.59 E-value=5.2e-06 Score=78.56 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=79.2
Q ss_pred CCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCCCCCC
Q 024237 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQ 161 (270)
Q Consensus 84 ~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~~G~t 161 (270)
..|++.- +|...+++|.|.|.+|.|.+..+- +.=+....+++-...+ ..+|++++... |...+. ++
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTS-g~Gl~lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~-p~ 116 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTATS-GPGFSLMQENIGYAAM---------TETPCVIVNVQRGGPSTGQ-PT 116 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEeecC-CCcHHHHHHHHHHHHH---------cCCCEEEEEeecCCCCCCC-CC
Confidence 4677777 999999999999999999999885 4445667888866553 37999997643 322222 33
Q ss_pred C-cchHHHHHc--cCC--CcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 162 H-SHCYAAWYA--SVP--GLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 162 H-~~~~~a~lr--~iP--n~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
+ +|.|.-..+ ..- +..|+.|+|++|+..+...|++ ..-|++++..
T Consensus 117 ~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D 170 (376)
T PRK08659 117 KPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLAD 170 (376)
T ss_pred CcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 3 466652223 221 3579999999999988877765 4679999854
No 42
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.44 E-value=3.5e-06 Score=86.32 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=154.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcccc----------------chhhHhhhCCCCeeecccchhHHHH
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFTG 98 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~----------------~~~~~~~~gp~R~id~GIaE~~~vg 98 (270)
..++|.-+=--++-.++.+...|-+.++|... |+|.- +..|.+..++--++|..++|-+.+|
T Consensus 885 g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~G 962 (1228)
T PRK12270 885 GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMG 962 (1228)
T ss_pred CCccHHHHHHHHHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhc
Confidence 56778777777788889999999999999753 44411 1234334444467899999999999
Q ss_pred HHHHHhhcC--CccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcc-hHH--HHH
Q 024237 99 IGVGAAYYG--LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYA--AWY 170 (270)
Q Consensus 99 ~AaGlA~~G--~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~-~~~--a~l 170 (270)
+-.|.+.+. -.++++.||.+|.. -..|+... -+..+| .|...|+++.|+|+ .|.|+.||. .+| --|
T Consensus 963 FEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIs-s~e~KW----gQ~S~vvlLLPHGy-EGQGPdHSSaRiERfLql 1036 (1228)
T PRK12270 963 FEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFIS-SGEAKW----GQRSGVVLLLPHGY-EGQGPDHSSARIERFLQL 1036 (1228)
T ss_pred cceeeecCCCcceeeehhhhcccccchHHHHHHHHh-hhHhhh----ccccceEEEccCCc-CCCCCCcchHHHHHHHHh
Confidence 999999985 68899999999986 56777764 446677 57889999999874 578999964 666 347
Q ss_pred ccCCCcEEEccCCHHHHHHHHHHhHh--CCCCeEEeecccccCCCCCCcccccCCCccccCCceE-EeEe-----C--Cc
Q 024237 171 ASVPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IERE-----G--KD 240 (270)
Q Consensus 171 r~iPn~~V~~P~d~~e~~~~l~~a~~--~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-vl~~-----G--~d 240 (270)
.+-.||+|..|++|.....+|+.-.. ..+|.+++.||.++|.+-..++. ..|.-|+++ |+.+ + -+
T Consensus 1037 cAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~v-----edFT~g~F~pVi~D~~~~~~~~V~ 1111 (1228)
T PRK12270 1037 CAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDV-----EDFTEGKFRPVIDDPTVDDGAKVR 1111 (1228)
T ss_pred hccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCH-----HHhccCCceecCCCCCCCCcccee
Confidence 78899999999999999999988543 36799999999988765332221 112223333 2221 1 24
Q ss_pred EEEEEechhHHHHHHHHHH
Q 024237 241 VTITAFSKIVGLSLKAAEI 259 (270)
Q Consensus 241 vtIva~G~~v~~al~Aa~~ 259 (270)
=+|+++|-...+.++..++
T Consensus 1112 RVlLcSGKvYYdL~a~R~k 1130 (1228)
T PRK12270 1112 RVLLCSGKLYYDLAARREK 1130 (1228)
T ss_pred EEEEEcchhHHHHHHHHHh
Confidence 4688899999988776544
No 43
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.27 E-value=4.1e-05 Score=72.44 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=76.3
Q ss_pred eeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCCCCCCC-
Q 024237 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH- 162 (270)
Q Consensus 86 ~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~~G~tH- 162 (270)
|+.+ =.|...+++|.|.|..|.|.++.+-.+ =+....|++-...+ ..+|++++... |...|. ++.
T Consensus 50 ~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~-G~~lm~E~~~~a~~---------~e~P~V~~~~~R~GpstG~-p~~~ 117 (375)
T PRK09627 50 FIQM-EDEISGISVALGASMSGVKSMTASSGP-GISLKAEQIGLGFI---------AEIPLVIVNVMRGGPSTGL-PTRV 117 (375)
T ss_pred EEEc-CCHHHHHHHHHHHHhhCCCEEeecCCc-hHHHHhhHHHHHHh---------ccCCEEEEEeccCCCcCCC-CCcc
Confidence 4443 399999999999999999999987433 45566788875443 58999997543 443332 332
Q ss_pred cchHHHHHc-----cCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 163 SHCYAAWYA-----SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 163 ~~~~~a~lr-----~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
.|.|.-..+ ..|.+ |+.|+|++|+..+...|++ ..-|++++.+
T Consensus 118 ~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D 169 (375)
T PRK09627 118 AQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLD 169 (375)
T ss_pred chHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecc
Confidence 345543333 55666 9999999999988877765 4679999854
No 44
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.24 E-value=3.8e-05 Score=76.79 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=110.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc-
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS- 163 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~- 163 (270)
-+++-...|...+.+|.|.|..|.|.++.+= ..=+..+.|+|.+ +++. | ...|++++..++. +.++++.
T Consensus 47 ~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts-~~Gl~~~~e~l~~-~~~~----g--~~~~iV~~~~~~~--gp~~~~~~ 116 (595)
T TIGR03336 47 VYFEWSVNEKVAVEVAAGAAWSGLRAFCTMK-HVGLNVAADPLMT-LAYT----G--VKGGLVVVVADDP--SMHSSQNE 116 (595)
T ss_pred EEEEECcCHHHHHHHHHHHHhcCcceEEEcc-CCchhhhHHHhhh-hhhh----c--CcCceEEEEccCC--CCccchhh
Confidence 4566777999999999999999999999885 4556788899966 5442 2 4788888766542 2234442
Q ss_pred chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeeccccc--CCC--C---CCcccc--cCCCcc-cc-
Q 024237 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY--GES--F---PVSAEV--LDSSFC-LP- 228 (270)
Q Consensus 164 ~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~~~~~--~~~--~---~~~~~~--~~~~~~-~~- 228 (270)
|.+.-+.+. -++-|+.|+|.+|+..+...|++ ..-||+++....+. .+. . +..+.. +..++. +.
T Consensus 117 q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 195 (595)
T TIGR03336 117 QDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVM 195 (595)
T ss_pred HhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCC
Confidence 444333333 37779999999999998888775 47799998643221 001 0 000000 000000 00
Q ss_pred ----------------------CCc--eE-EeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 229 ----------------------IGK--AK-IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 229 ----------------------~Gk--~~-vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
... .. +..++.|++||++|++++.+++|.++| |++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v 258 (595)
T TIGR03336 196 VPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSV 258 (595)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEE
Confidence 000 11 223468999999999999999987765 888876
No 45
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.12 E-value=0.00015 Score=69.42 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=110.0
Q ss_pred eeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCc-
Q 024237 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS- 163 (270)
Q Consensus 86 ~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~- 163 (270)
|+.+= +|...+++|.|.|..|.|.+..+- +.=+..+.|.|.... . ..+|++++... |...+ -++|.
T Consensus 59 ~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS-~~Gl~lm~E~l~~aa-~--------~~~P~V~~~~~R~~~~~-~~i~~d 126 (407)
T PRK09622 59 FVMVE-SEHAAMSACVGAAAAGGRVATATS-SQGLALMVEVLYQAS-G--------MRLPIVLNLVNRALAAP-LNVNGD 126 (407)
T ss_pred EEeec-cHHHHHHHHHHHHhhCcCEEeecC-cchHHHHhhHHHHHH-H--------hhCCEEEEEeccccCCC-cCCCch
Confidence 54433 999999999999999999999874 445667789987643 4 47998887543 32222 23442
Q ss_pred chHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC------CCCeEEeecccc-c--CCCCCC--cc--------------
Q 024237 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD------PDPVVFLENELL-Y--GESFPV--SA-------------- 218 (270)
Q Consensus 164 ~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~------~~P~~ir~~~~~-~--~~~~~~--~~-------------- 218 (270)
|.|.-..| --++.++.|+|++|+..+...|.+. .-|++++.+.-+ . .+++.. .+
T Consensus 127 ~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~ 205 (407)
T PRK09622 127 HSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNS 205 (407)
T ss_pred HHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCccccccc
Confidence 44432234 4679999999999999988887653 569999754221 0 000000 00
Q ss_pred -----------cccCCCccc----------------------c----CC----ceEEeE-eCCcEEEEEechhHHHHHHH
Q 024237 219 -----------EVLDSSFCL----------------------P----IG----KAKIER-EGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 219 -----------~~~~~~~~~----------------------~----~G----k~~vl~-~G~dvtIva~G~~v~~al~A 256 (270)
.....+... + .| ..+... ++.|++||++|+++..+.+|
T Consensus 206 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea 285 (407)
T PRK09622 206 MLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVA 285 (407)
T ss_pred ccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHH
Confidence 000000000 0 11 111111 35789999999999999999
Q ss_pred HHHHHhcCCCeee
Q 024237 257 AEILAKEGISAEV 269 (270)
Q Consensus 257 a~~L~~~Gi~~~V 269 (270)
++.|+++|+++.|
T Consensus 286 ~~~L~~~G~kvgv 298 (407)
T PRK09622 286 AKEMRKEGIKAGV 298 (407)
T ss_pred HHHHHhCCCCeEE
Confidence 9999999998875
No 46
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.99 E-value=0.00036 Score=58.81 Aligned_cols=152 Identities=11% Similarity=0.089 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcCC-cEEEEecCCCCCCCccccchhhHh----h---------hCCCCeeecccchhHHHHHHHHHhhc
Q 024237 41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLE----K---------YGPERVLDTPITEAGFTGIGVGAAYY 106 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~-~iv~l~~Dl~~~~g~~~~~~~~~~----~---------~gp~R~id~GIaE~~~vg~AaGlA~~ 106 (270)
.++++-|.++++.|+ +..++++|-..|+....+.+...+ . -.+++-+..-++|+.+.|...|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888875 788999997766554332211111 1 11246666779999999999999999
Q ss_pred CCccEEEeehhhHH------HHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC-CCCCCCcchH---HHHHccCCCc
Q 024237 107 GLKPVVEFMTFNFS------MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA-GVGAQHSHCY---AAWYASVPGL 176 (270)
Q Consensus 107 G~~Pi~~~~~~~f~------~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~-~~G~tH~~~~---~a~lr~iPn~ 176 (270)
|.+-++.+|-+|.. ..=.-.+++. ....|+..- ..+++++. +..--+ .+|-|| |.. +.++.-.|+.
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~-~~~~wR~~~-~SlN~l~T-S~~wrQdhNG~SH-QdPgfi~~~~~k~~~~ 157 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHA-RELPWRAPI-PSLNYLLT-SHVWRQDHNGFSH-QDPGFIDHVLNKKPDV 157 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHH-HH-TTS----B-EEEEEE-S-CCG-TTT-GGG----THHHHHHCC--T-
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH-HhCcCCCCC-cceeEEee-ccceecCCCCccc-CCChHHHHHHhcCccc
Confidence 99999999877651 1111222221 233444211 12233332 222333 488999 533 3676666664
Q ss_pred -EEEccCCHHHHHHHHHHhHh
Q 024237 177 -KVLSPYSSEDARGLLKAAIR 196 (270)
Q Consensus 177 -~V~~P~d~~e~~~~l~~a~~ 196 (270)
.|+.|.|++-+-.+++.|++
T Consensus 158 ~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 158 VRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH
T ss_pred ceeecCCcHhHHHHHHHHHhc
Confidence 89999999999999999886
No 47
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.89 E-value=0.00083 Score=63.94 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=75.5
Q ss_pred cchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCCCC-cchHHH
Q 024237 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQH-SHCYAA 168 (270)
Q Consensus 91 IaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~tH-~~~~~a 168 (270)
=+|...+++|.|.|.+|.|.++.+- +-=+..+.|.|.. ++. ..+|+++... .+.. +..++| .|.|.-
T Consensus 56 E~E~aA~~~aiGAs~aGaRa~TaTS-g~Gl~lm~E~l~~-aa~--------~~lPiVi~~~~R~~p-~~~~~~~~q~D~~ 124 (390)
T PRK08366 56 ESEHSAMAACIGASAAGARAFTATS-AQGLALMHEMLHW-AAG--------ARLPIVMVDVNRAMA-PPWSVWDDQTDSL 124 (390)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeC-cccHHHHhhHHHH-HHh--------cCCCEEEEEeccCCC-CCCCCcchhhHHH
Confidence 3899999999999999999999885 4456778899965 444 4799998653 2222 223554 255543
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
..+. -++.++.|+|.+|+..+...|++ ..-|++++.+
T Consensus 125 ~~~d-~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~D 165 (390)
T PRK08366 125 AQRD-TGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVES 165 (390)
T ss_pred HHhh-cCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 3343 38899999999999988777765 4779988753
No 48
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=97.80 E-value=0.00079 Score=67.03 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=77.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCCCCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH 162 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~~G~tH 162 (270)
-.+.-.=+|...+++|.|.|..|.|.++.+- ..=+..+.|.|-. ++. ..+|++++..+ |...+. +++
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTS-g~Gl~lm~E~l~~-a~~--------~~~P~Vi~~~~R~gpstg~-~t~ 306 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTATS-GPGFALMTEALGL-AGM--------TETPLVIVDVQRGGPSTGL-PTK 306 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeecCC-CCChhHhHHHHhH-HHh--------ccCCEEEEEcccCCCCCCC-CCC
Confidence 5566677999999999999999999999885 4445577788843 322 57899998653 222222 344
Q ss_pred -cchHHHHHccC----CCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 163 -SHCYAAWYASV----PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 163 -~~~~~a~lr~i----Pn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
.|.|.-..+.- -++.|+.|+|++|+..+...|++ ..-||+++.+
T Consensus 307 ~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D 359 (562)
T TIGR03710 307 TEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSD 359 (562)
T ss_pred ccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 35554333321 14789999999999988777764 4679998753
No 49
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.00018 Score=69.91 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=144.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchh----------------hHhhh-CCCCeeecccchhHHH
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG----------------LLEKY-GPERVLDTPITEAGFT 97 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~----------------~~~~~-gp~R~id~GIaE~~~v 97 (270)
.+++|..|-.-++..++.+..+|-+.++|++. |+|+.... +.... |.=-+-|..++|++.+
T Consensus 562 ~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvL 639 (913)
T KOG0451|consen 562 VKIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVL 639 (913)
T ss_pred CccchHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhh
Confidence 57899999999999999999999999999985 55533111 11000 0113456789999999
Q ss_pred HHHHHHhhcC--CccEEEeehhhHHHHHHHHHHHH----HhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchH-HHHH
Q 024237 98 GIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINS----AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWY 170 (270)
Q Consensus 98 g~AaGlA~~G--~~Pi~~~~~~~f~~ra~dqi~~~----~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~-~a~l 170 (270)
|+-.|||.+. ..++++.++.+|..-| ||..| -+..+|+ ....++++.|.|+. |-|+.||.|- |.++
T Consensus 640 GFEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl----~ssglvmLLPHGyD-GAgpeHSSCRiERFL 712 (913)
T KOG0451|consen 640 GFEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWL----ESSGLVMLLPHGYD-GAGPEHSSCRIERFL 712 (913)
T ss_pred hhhcccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhh----hhCCeEEEccCCcC-CCCCccchhhHHHHH
Confidence 9999999995 7889999999887654 55432 2345665 34566777787764 4478887544 4333
Q ss_pred c-----------cCCCcEEEccCCHHHHHHHHHHhH-h-CCCCeEEeecccccCCCCCCcc--c-ccCCCccccCCceEE
Q 024237 171 A-----------SVPGLKVLSPYSSEDARGLLKAAI-R-DPDPVVFLENELLYGESFPVSA--E-VLDSSFCLPIGKAKI 234 (270)
Q Consensus 171 r-----------~iPn~~V~~P~d~~e~~~~l~~a~-~-~~~P~~ir~~~~~~~~~~~~~~--~-~~~~~~~~~~Gk~~v 234 (270)
. .--||.|+-|.+|.+...+|+.-+ + ...|.++-.||-++|-+-..+. + -|...+.-.+|.. +
T Consensus 713 QlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-~ 791 (913)
T KOG0451|consen 713 QLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-I 791 (913)
T ss_pred HHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccc-c
Confidence 2 224899999999999999998644 3 4789999888776653221111 1 1223333344433 2
Q ss_pred eE-eCCcEEEEEechhHHHHHHHHHHHHh
Q 024237 235 ER-EGKDVTITAFSKIVGLSLKAAEILAK 262 (270)
Q Consensus 235 l~-~G~dvtIva~G~~v~~al~Aa~~L~~ 262 (270)
.+ +.-+-+|++.|.-.....++.|.+..
T Consensus 792 ~~p~kvkkvifcSGKH~y~l~k~Re~rga 820 (913)
T KOG0451|consen 792 AKPEKVKKVIFCSGKHYYTLAKEREKRGA 820 (913)
T ss_pred cChhHheEEEEecCcchhhHHHHHHhccc
Confidence 22 23345677888877777777666543
No 50
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=97.53 E-value=0.00017 Score=73.77 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=126.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcccc----------------chhhHhhhCCCCeeecccchhHHHH
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFTG 98 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~----------------~~~~~~~~gp~R~id~GIaE~~~vg 98 (270)
...+|..+-.-+...++.....+.+-++|... |+|.. +..+....+.=.++|.+.+|++++|
T Consensus 564 ~~iDW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlg 641 (906)
T COG0567 564 QGIDWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLG 641 (906)
T ss_pred cccchhHHHHhcccceeccCCccccccccCCC--cCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHh
Confidence 46777777777777788888899999999863 44422 1223333334478899999999999
Q ss_pred HHHHHhhcC--CccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcc-hHHH--HH
Q 024237 99 IGVGAAYYG--LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAA--WY 170 (270)
Q Consensus 99 ~AaGlA~~G--~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~-~~~a--~l 170 (270)
+-.|.+..- ...+++.|+.+|.. ..+||... .+..+| .....++...|+|+ .|.|+.||. .+|. -+
T Consensus 642 FEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfis-Sge~KW----~r~sgLv~lLPHgy-EGQGPEHSSaRlER~LQL 715 (906)
T COG0567 642 FEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFIS-SGEQKW----GRMSGLVMLLPHGY-EGQGPEHSSARLERFLQL 715 (906)
T ss_pred hhhhhhhcCCchhhhhhhhhcccccCCeeeeccccc-cHHHHH----HHhcCceEEccCCC-CCCCCcCccchhHHHHHh
Confidence 999999984 66788888888876 56777754 345566 36678888888764 578999974 5563 34
Q ss_pred ccCCCcEEEccCCHHHHHHHHHHhHh--CCCCeEEeecccccCCC
Q 024237 171 ASVPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGES 213 (270)
Q Consensus 171 r~iPn~~V~~P~d~~e~~~~l~~a~~--~~~P~~ir~~~~~~~~~ 213 (270)
.+--||+|..|++|.+...+++.=+. ...|.++..|+.+.|.+
T Consensus 716 caE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~ 760 (906)
T COG0567 716 CAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHK 760 (906)
T ss_pred hHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhcc
Confidence 44559999999999999998887543 36799999898877653
No 51
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.50 E-value=0.0066 Score=57.91 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=74.2
Q ss_pred ccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCcchHHH
Q 024237 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAA 168 (270)
Q Consensus 90 GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~~~~~a 168 (270)
.=+|...+++|.|.|..|.|.+..+- +.=+..+.|.|.. ++. ..+|++++... +...+.+.+..|.|.-
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS-~~Gl~lm~E~l~~-aag--------~~lP~V~vv~~R~~~~p~~i~~d~~D~~ 125 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATA-SQGLALMHEVLFI-AAG--------MRLPIVMAIGNRALSAPINIWNDWQDTI 125 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeec-cchHHHHhhHHHH-HHH--------ccCCEEEEECCCCCCCCCCcCcchHHHH
Confidence 34899999999999999999999884 5557778899965 444 47999987532 2222222222344533
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhC----C--CCeEEeec
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRD----P--DPVVFLEN 206 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~----~--~P~~ir~~ 206 (270)
..|.- ++.++.|+|.+|+..+...|.+. + -|++++.+
T Consensus 126 ~~rd~-g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~D 168 (394)
T PRK08367 126 SQRDT-GWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFD 168 (394)
T ss_pred hcccc-CeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEec
Confidence 33443 57788999999999887777652 2 59998754
No 52
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00055 Score=68.15 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=162.6
Q ss_pred CcceeeccCCCCCcCCccc-----cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccc---------------
Q 024237 15 SPVARIRPVVSNLRNYSSA-----VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS--------------- 74 (270)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~--------------- 74 (270)
|.-.-|++|-.-++.+... .+..+|.-+-.-+...++++.-.|-+-++|+.. |+|+..
T Consensus 622 s~PE~F~~Hrgl~Ril~~R~~mi~~~~iDwal~EalAFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~ 699 (1017)
T KOG0450|consen 622 SVPEGFKIHRGLKRILKNRAQMIKSEGVDWALAEALAFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYI 699 (1017)
T ss_pred cCCcccchhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceec
Confidence 3346788888877777664 245667777777778888999999999999963 555321
Q ss_pred --hhhHhhhCCCCeeecccchhHHHHHHHHHhhc--CCccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEE
Q 024237 75 --KGLLEKYGPERVLDTPITEAGFTGIGVGAAYY--GLKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIV 147 (270)
Q Consensus 75 --~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~--G~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi 147 (270)
+.|..+..|=-+-|..++|-+.+|+-.|.|+. ...++++.+|.+|.. ..+||... .+..+|. +...++
T Consensus 700 PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIs-sGqaKW~----rqsGlV 774 (1017)
T KOG0450|consen 700 PLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFIS-SGQAKWV----RQSGLV 774 (1017)
T ss_pred chhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccchhhHHhHhc-cchhhhh----hhcCeE
Confidence 12222222335678999999999999999998 478899999998865 66888863 4566774 566788
Q ss_pred EEecCCCCCCCCCCCcc-hHHHHHc-------cC-------------CCcEEEccCCHHHHHHHHHHhHh--CCCCeEEe
Q 024237 148 FRGPNGAAAGVGAQHSH-CYAAWYA-------SV-------------PGLKVLSPYSSEDARGLLKAAIR--DPDPVVFL 204 (270)
Q Consensus 148 ~~~~~G~~~~~G~tH~~-~~~a~lr-------~i-------------Pn~~V~~P~d~~e~~~~l~~a~~--~~~P~~ir 204 (270)
+..|+|. .|.|+.||. ..|.+|- -+ =|++|+-+++|.....+|+--+. ...|.+|+
T Consensus 775 llLPHGy-eG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif 853 (1017)
T KOG0450|consen 775 LLLPHGY-EGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIF 853 (1017)
T ss_pred EEccCCc-CCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEe
Confidence 8888775 467899963 3332221 11 27789999999999999988765 37899999
Q ss_pred ecccccCCCCCCcc--ccc-CCCcc---ccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 205 ENELLYGESFPVSA--EVL-DSSFC---LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 205 ~~~~~~~~~~~~~~--~~~-~~~~~---~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
.+|.|+|.+...++ +.. ...+. -+-|++-.-.++-+-.|+++|......-++.+...
T Consensus 854 ~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~ 916 (1017)
T KOG0450|consen 854 TPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVG 916 (1017)
T ss_pred ccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcC
Confidence 99988875432221 111 11111 11233333345656778899988777767666554
No 53
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.12 E-value=0.042 Score=45.16 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCC---C
Q 024237 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG---A 160 (270)
Q Consensus 84 ~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G---~ 160 (270)
-+++.+- .|+..+.+|.|.++.|.+..+.+. ..-+..+...|.+-. . ...|++++..+-.....+ .
T Consensus 42 i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~-gpG~~n~~~~l~~a~-~--------~~~P~v~i~g~~~~~~~~~~~~ 110 (160)
T cd07034 42 GVVVQAE-SEHAAAEAAIGASAAGARAMTATS-GPGLNLMAEALYLAA-G--------AELPLVIVVAQRPGPSTGLPKP 110 (160)
T ss_pred cEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeC-cchHHHHHHHHHHHH-h--------CCCCEEEEEeeCCCCCCCCCCc
Confidence 4788877 999999999999999888444444 445666888886533 2 369999986532222222 2
Q ss_pred CCcchHH--HHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 161 QHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 161 tH~~~~~--a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
.| +... .+++. -.-++.+.+++|+..+++.+++ .++|++++.
T Consensus 111 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 111 DQ-SDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred Cc-HHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 23 4333 34433 6778889999999888877765 357999863
No 54
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.88 E-value=0.059 Score=53.71 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=82.2
Q ss_pred CCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc
Q 024237 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (270)
Q Consensus 84 ~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~ 163 (270)
+-+++-+..|--+...|.|.+..|.+-.++.= .-=+.++-|-+++ ++|. | .+--++++..|-. +-..++.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~----G--v~GGlviv~aDDp--g~~SSqn 127 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYA----G--VTGGLVIVVADDP--GMHSSQN 127 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhc----C--ccccEEEEEccCC--Ccccccc
Confidence 78999999999999999999999999998765 4457899999986 5563 1 2334555443211 1111221
Q ss_pred chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 164 ~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
+-+--++...-.+-|+.|+|++|+..+.+.+++ .+-|+++|..
T Consensus 128 eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~t 174 (640)
T COG4231 128 EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTT 174 (640)
T ss_pred hhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 233355666678889999999999999999886 3679999853
No 55
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.77 E-value=0.018 Score=47.04 Aligned_cols=110 Identities=24% Similarity=0.206 Sum_probs=71.6
Q ss_pred CeeecccchhHHHHHHHHHhhcCCc-cEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCC-CC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QH 162 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~-Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~-tH 162 (270)
|++. ...|+.++.+|.|.++.+.+ .++......=+..+...|.+ +.. .++|++++..+-.....+. +|
T Consensus 36 ~~i~-~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~-A~~--------~~~Pll~i~~~~~~~~~~~~~~ 105 (155)
T cd07035 36 RYIL-VRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN-AYL--------DSIPLLVITGQRPTAGEGRGAF 105 (155)
T ss_pred EEEE-eCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH-HHh--------hCCCEEEEeCCCccccccCCcc
Confidence 4444 45999999999999999654 45555535556677788865 322 4899999875422222222 23
Q ss_pred cchH-HHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEee
Q 024237 163 SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLE 205 (270)
Q Consensus 163 ~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~ 205 (270)
+..+ ..+++.+-.. .+...+++|+...++.+++ . ++|+||..
T Consensus 106 q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 106 QEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred cccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 1233 3777777544 5666788888887777765 2 57999854
No 56
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.55 E-value=0.014 Score=55.01 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=76.3
Q ss_pred CeeecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHH--hhccccCCCCCCCCEEEEecC-CCCC-CCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSA--AKSNYMSSGQISVPIVFRGPN-GAAA-GVG 159 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~--a~~~~~sg~~~~~pvi~~~~~-G~~~-~~G 159 (270)
|++ .--.|.+.||+|+|..+. |.+|+++.|.+-+ ..+...|. ++ ... -++|++++..+ |..+ .+-
T Consensus 28 ~~i-~~~~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~~-------y~iP~l~~i~~RG~~g~~de 97 (361)
T TIGR03297 28 RHV-IAANEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTEV-------YDIPLLLIVGWRGEPGVHDE 97 (361)
T ss_pred eEE-ecCCchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhccccc-------cCcCeeEEEecCCCCCCCCC
Confidence 443 345699999999999999 9999999997754 33455553 22 111 37899887653 6544 356
Q ss_pred CCCc---chHHHHHccCCCcEEEcc-CCHHHHHH----HHHHhHhCCCCeEEeeccccc
Q 024237 160 AQHS---HCYAAWYASVPGLKVLSP-YSSEDARG----LLKAAIRDPDPVVFLENELLY 210 (270)
Q Consensus 160 ~tH~---~~~~a~lr~iPn~~V~~P-~d~~e~~~----~l~~a~~~~~P~~ir~~~~~~ 210 (270)
+.|. .....+|..+ ++..... .+.+|... +++++.+.+.|+.+...+..+
T Consensus 98 pqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 98 PQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred chhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 7773 2234788877 6655555 55555554 455555668899998776654
No 57
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=96.54 E-value=0.011 Score=52.26 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=70.9
Q ss_pred eeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCc-
Q 024237 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS- 163 (270)
Q Consensus 86 ~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~- 163 (270)
.+.-.-.|...++++.|.|+.|.|.++.+- +-=+..+.|.|.. ++. ..+|++++... +.....+++|+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts-~~Gl~lm~e~l~~-a~~--------~~~P~V~~~~~R~g~~~g~~~~~~ 107 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATS-GPGLNLMAEPLYW-AAG--------TELPIVIVVVQRAGPSPGLSTQPE 107 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEE-CCHHHHHCCCHHH-HHH--------TT--EEEEEEEB---SSSB--SB-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeec-CCcccccHhHHHH-HHH--------cCCCEEEEEEECCCCCCCCcCcCC
Confidence 567778999999999999999999998774 4456667788865 444 47899987542 21111133443
Q ss_pred chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 164 ~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
|.|.-..+ --++.++.|+|++|+..+...|++ ...||+++.+
T Consensus 108 q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 108 QDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 45544444 458889999999999998877765 4789999754
No 58
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.52 E-value=0.15 Score=55.10 Aligned_cols=104 Identities=20% Similarity=0.142 Sum_probs=68.9
Q ss_pred ccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCC--CCCCCcch
Q 024237 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAG--VGAQHSHC 165 (270)
Q Consensus 90 GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~--~G~tH~~~ 165 (270)
.=+|...++++.|.+..|.+.+..+-.+- +....+.|.. ++- ..+|+++.... +...+ ..+.| .
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T~TSs~G-L~LM~e~l~~-~ag--------~~~P~Vi~va~R~~~~~~~~i~~dh--~ 124 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTTFTASQG-LLLMIPNMYK-IAG--------ELLPCVFHVSARAIAAHALSIFGDH--Q 124 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEEecChhH-HHHHHHHHHH-HHh--------ccCCEEEEEecCCCCCCCCccCCCc--h
Confidence 34899999999999999998887774333 4455666642 321 36899987542 22111 22234 3
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeec
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLEN 206 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~ 206 (270)
|....|.. |..+++|++.+|+..+-..|. +...|+++..+
T Consensus 125 Dv~~~R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 125 DVMAARQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFD 168 (1165)
T ss_pred HHHHhhcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 44445665 889999999999987655544 45679888643
No 59
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.45 E-value=0.052 Score=45.17 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=66.7
Q ss_pred ccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCc--ch-
Q 024237 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS--HC- 165 (270)
Q Consensus 90 GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~--~~- 165 (270)
...|+..+++|+|.++.|.+|.++.+.+-+. .+..-|.. +.. ...+||+++..+ |..+..-+.|. ..
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~-a~~-------~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~ 110 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALAS-LNK-------TYGIPLPILASWRGVYKEKIPAQIPMGRA 110 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHH-HHH-------cCCCCEEEEEeccCCCCCCCccccchhhh
Confidence 6789999999999999999999988866643 45555543 221 147999998643 43221111111 11
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeeccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENEL 208 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~~~ 208 (270)
-+..|..+ ++......+++|+ ..++.|+ +.++|++|..++.
T Consensus 111 ~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 111 TPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred hHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 12333333 3345556667777 6666655 4578999976543
No 60
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.34 E-value=0.06 Score=45.04 Aligned_cols=126 Identities=20% Similarity=0.149 Sum_probs=74.9
Q ss_pred cchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec
Q 024237 73 ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP 151 (270)
Q Consensus 73 ~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~ 151 (270)
+.+.+.+.- -=|++. ...|++++.+|.|.++.+-+|-+++..+ .=+..+.--|.+ ++. .+.|++++..
T Consensus 30 l~~al~~~~-~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~~-------~~~Pvl~i~g 98 (172)
T PF02776_consen 30 LLDALEKSP-GIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AYA-------DRIPVLVITG 98 (172)
T ss_dssp HHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HHH-------TT-EEEEEEE
T ss_pred HHHHhhhhc-ceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--ccc-------ceeeEEEEec
Confidence 334454432 135555 7899999999999999866664444333 233444444543 232 5899999865
Q ss_pred C-CCC-CCCCCCCcchH-HHHHccCCCcEEEccCCHHHHHHHHHHhH-----hCCCCeEEeeccccc
Q 024237 152 N-GAA-AGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAI-----RDPDPVVFLENELLY 210 (270)
Q Consensus 152 ~-G~~-~~~G~tH~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~-----~~~~P~~ir~~~~~~ 210 (270)
+ +.. .+.+..|...+ ..+++.+- -..+.+.+++++...++.|+ ..++|+||..|..++
T Consensus 99 ~~~~~~~~~~~~q~~~d~~~~~~~~~-k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~ 164 (172)
T PF02776_consen 99 QRPSAGEGRGAFQQEIDQQSLFRPVT-KWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQ 164 (172)
T ss_dssp ESSGGGTTTTSTTSSTHHHHHHGGGS-SEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHH
T ss_pred ccchhhhcccccccchhhcchhcccc-chhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHh
Confidence 3 222 23455552233 48888885 34566666666665555544 348899998776544
No 61
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.42 E-value=0.52 Score=46.49 Aligned_cols=114 Identities=15% Similarity=0.047 Sum_probs=71.0
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccEEEee-hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFM-TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~-~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
||+ .--.|++++.+|.|.|+..-+|-+++- ...-+..++--|.+ + + ..++||+++....... +.+..
T Consensus 50 ~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~ 119 (530)
T PRK07092 50 RYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT-A-F-------KNHTPLVITAGQQARSILPFEPF 119 (530)
T ss_pred CEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH-H-h-------hcCCCEEEEecCCcccccCccch
Confidence 555 678999999999999998556644432 22333345555543 2 2 2589999886532222 23333
Q ss_pred CcchH-HHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
|+..+ ..+++.+--..... .+++++...++.|++ . .||+||-.|..+
T Consensus 120 ~~~~d~~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 120 LAAVQAAELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred hcccCHHHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 31123 48888886655544 667777766666654 2 579999877554
No 62
>PRK07524 hypothetical protein; Provisional
Probab=95.12 E-value=0.41 Score=47.25 Aligned_cols=111 Identities=25% Similarity=0.157 Sum_probs=71.2
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CC--CCCCc
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV--GAQHS 163 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~--G~tH~ 163 (270)
..-.|++.+.+|-|.|+..-+| +|...+..=+..+.--|.+ + + ..++||+++...-... +. +..|
T Consensus 44 ~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~~~~- 113 (535)
T PRK07524 44 TPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQ-A-Y-------ADSIPMLVISSVNRRASLGKGRGKLH- 113 (535)
T ss_pred EeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-H-------hcCCCEEEEeCCCChhhcCCCCcccc-
Confidence 3568999999999999985555 4433223334445555543 2 2 2589999986432211 21 2334
Q ss_pred ch-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 164 HC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 164 ~~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
+. + ..+++.+= -......+++++...++.|++ ..|||||-.|+.+.
T Consensus 114 ~~~d~~~l~~~~t-k~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 114 ELPDQRAMVAGVA-AFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred ccccHHHHhhhhc-eeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 42 3 48888874 455677778888888777764 26899998876544
No 63
>PRK08322 acetolactate synthase; Reviewed
Probab=95.12 E-value=0.33 Score=47.94 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=70.4
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcch--
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-- 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~-- 165 (270)
....|++++.+|.|.|+.--+| ++......=+..++--|-+ + + ..++||+++...-.....+..+.|.
T Consensus 43 ~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~-A-~-------~~~~Pll~i~g~~~~~~~~~~~~q~~d 113 (547)
T PRK08322 43 LTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY-A-Q-------LGGMPMVAITGQKPIKRSKQGSFQIVD 113 (547)
T ss_pred EeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH-H-h-------hcCCCEEEEeccccccccCCCcccccc
Confidence 4679999999999999985555 4333223334445555543 2 2 2589999986532222222222243
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeeccccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~~ 210 (270)
..++++.+-- ......+++++..+++.|++. .|||||-.|..+.
T Consensus 114 ~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (547)
T PRK08322 114 VVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA 162 (547)
T ss_pred HHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 2488887754 456667788877777776642 5899998776544
No 64
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.03 E-value=0.42 Score=39.87 Aligned_cols=109 Identities=14% Similarity=0.002 Sum_probs=67.8
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC--CCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~--~G~tH~~~ 165 (270)
..--|+++..+|-|.|+.--+| ++......=+..++--+.+.. . .++||+++..+..... .+..|...
T Consensus 43 ~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~-~--------~~~Pvl~I~g~~~~~~~~~~~~q~~d 113 (164)
T cd07039 43 QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAK-R--------DRAPVLAIAGQVPTDELGTDYFQEVD 113 (164)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHH-h--------cCCCEEEEecCCcccccCCCCCcccC
Confidence 4678999999999999985455 333322333444555565422 2 5899999975433222 22222112
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeecc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENE 207 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~~ 207 (270)
...+++.+=. -...+.+++++...++.|++ ..+||||-.|.
T Consensus 114 ~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 114 LLALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred HHHHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 2478888854 45556677777777776654 46899996553
No 65
>PRK08611 pyruvate oxidase; Provisional
Probab=95.02 E-value=1.6 Score=43.60 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=70.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. ...|++++.+|.|.|+.--+| ++.+.+..=+..++--|.+ + + ..++||+++...-... +.+..
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~-A-~-------~~~~Pvl~ItG~~~~~~~~~~~~ 114 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYD-A-K-------MDHVPVLALAGQVTSDLLGTDFF 114 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEecCCcccccCCCCc
Confidence 5554 678999999999999875455 3333223334445555543 2 3 2589999986542222 23333
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~~~~~ 210 (270)
|......+++.+--. .....+++++...++.|+ ...+||||-.|..+.
T Consensus 115 q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~ 166 (576)
T PRK08611 115 QEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLP 166 (576)
T ss_pred cccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhh
Confidence 322235888887433 345567777776666654 447899998876543
No 66
>PRK07586 hypothetical protein; Validated
Probab=94.90 E-value=0.59 Score=45.87 Aligned_cols=112 Identities=19% Similarity=0.033 Sum_probs=66.6
Q ss_pred cccchhHHHHHHHHHhhcCCccE-EEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC--CCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~Pi-~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~--~G~tH~~~ 165 (270)
.---|++.+.+|.|.|+.--+|- |...+..=+..+.--|.+ + + ..++||+++........ .+..+...
T Consensus 44 ~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d 114 (514)
T PRK07586 44 LGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN-A-R-------RARTPIVNIVGDHATYHRKYDAPLTSD 114 (514)
T ss_pred EeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH-H-H-------hcCCCEEEEecCCchhccCCCcccccc
Confidence 35689999999999999855553 332222223445555543 2 2 25899999865422222 22222122
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeeccccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~~ 210 (270)
...+++.+= -......+++++...++.|++ . ++||||-.|..+.
T Consensus 115 ~~~~~~~vt-k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 115 IEALARPVS-GWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred hhhhhcccc-ceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 247777762 234556667777766666553 3 6899998776543
No 67
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=94.77 E-value=0.97 Score=37.36 Aligned_cols=144 Identities=15% Similarity=0.063 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehh-hH
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF-NF 119 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~-~f 119 (270)
+.+-+.|.+.+ + ..+++. |.+.. .. .-+.....|.+|+..|--- .-++.|.|+++.-.+|++++.-- .|
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~--d~G~~----~~-~~~~~~~~~~~~~~~gsmG-~~lp~AiGa~~a~~~~Vv~i~GDG~f 71 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVS--TTGYA----SR-ELYDVQDRDGHFYMLGSMG-LAGSIGLGLALGLSRKVIVVDGDGSL 71 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEe--CCCHh----HH-HHHHhhcCCCCEEeecchh-hHHHHHHHHHhcCCCcEEEEECchHH
Confidence 34556666666 3 334433 33421 11 1133323378998633222 12346777776544788776522 22
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCCCC--CCCc--chHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVG--AQHS--HCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~~G--~tH~--~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a 194 (270)
.+-. ..+ ..++.. .++|++++. .++..+-.+ .++. ..+..+.+++ |+.-+...+++|+...++.+
T Consensus 72 ~m~~-~el-~t~~~~-------~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a 141 (157)
T cd02001 72 LMNP-GVL-LTAGEF-------TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGL 141 (157)
T ss_pred Hhcc-cHH-HHHHHh-------cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHH
Confidence 2222 222 223321 248887765 343322112 1221 1234555554 66667778999999999999
Q ss_pred HhCCCCeEEe
Q 024237 195 IRDPDPVVFL 204 (270)
Q Consensus 195 ~~~~~P~~ir 204 (270)
++.++|++|.
T Consensus 142 ~~~~gp~vi~ 151 (157)
T cd02001 142 LATTGPTLLH 151 (157)
T ss_pred HhCCCCEEEE
Confidence 9989999884
No 68
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.57 E-value=1.9 Score=43.21 Aligned_cols=113 Identities=18% Similarity=0.042 Sum_probs=67.8
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCC-CC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QH 162 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~-tH 162 (270)
|++.+ --|++++.+|-|.|+..-+| ++...+..=+..++--|.+ + + ..++||++++........|. .+
T Consensus 61 ~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~ 130 (587)
T PRK06965 61 QHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIAT-A-Y-------MDSIPMVVISGQVPTAAIGQDAF 130 (587)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCCc
Confidence 56655 79999999999999985444 4444333334445555543 2 2 25899999975432222221 13
Q ss_pred cch-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 163 SHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 163 ~~~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
|. | .++++.+=-. .....+++++..+++.|++ . .+||||-.|..+
T Consensus 131 -q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 131 -QECDTVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred -ccccHHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 32 2 3778877443 3344566666655555543 3 589999877654
No 69
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.55 E-value=0.49 Score=46.76 Aligned_cols=115 Identities=13% Similarity=0.039 Sum_probs=69.7
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++.+- .|++++.+|-|.|+.-.+| +|...+..-+.-++--|.+ + +. .++||++++...... +.+..
T Consensus 38 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~-A-~~-------~~~Pvl~I~G~~~~~~~~~~~~ 107 (539)
T TIGR02418 38 ELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT-A-NS-------EGDPVVAIGGQVKRADLLKLTH 107 (539)
T ss_pred CEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH-H-hh-------cCCCEEEEeCCCcccccccCcc
Confidence 565554 9999999999999874444 4333333334445555543 2 32 589999986532222 23332
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~~ 210 (270)
|.....++++.+-- ......+++++...++.+++ . +|||||..|..+.
T Consensus 108 q~~d~~~~~~~~tk-~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 108 QSMDNVALFRPITK-YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred cccchhhhhhccee-eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 32233588888754 34444677777766666553 2 5899998876543
No 70
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.52 E-value=0.42 Score=47.81 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=66.9
Q ss_pred cccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
..-.|++++.+|.|.|+. |...+|.+.+..=+..++--|.+ + + ..++||+++....... +.+. + |.
T Consensus 48 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~-A-~-------~~~~Pvl~I~g~~~~~~~~~~~-~-q~ 116 (588)
T PRK07525 48 DVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVAT-A-Y-------WAHTPVVLVTPQAGTKTIGQGG-F-QE 116 (588)
T ss_pred EecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-H-h-------hcCCCEEEEeCCCCcccCCCCC-C-cc
Confidence 356899999999999987 54445444333333445555543 2 2 2589999997432221 2222 3 32
Q ss_pred -H-HHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeeccccc
Q 024237 166 -Y-AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLY 210 (270)
Q Consensus 166 -~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~~~~~ 210 (270)
+ ..+++.+=. -.....+++++...++.|+ ...+||||-.|+.+.
T Consensus 117 ~d~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 117 AEQMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred cchhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 2 478887644 3444566776666665555 457899998876554
No 71
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.48 E-value=0.99 Score=48.73 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=98.2
Q ss_pred cCCcccc--ccchHHHHHHHHHHHHhhcCCc--E---EEEecCCCCCCCcc--ccchhhHhhhCC-----CCeeecccch
Q 024237 28 RNYSSAV--KQMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGAY--KISKGLLEKYGP-----ERVLDTPITE 93 (270)
Q Consensus 28 ~~~~~~~--~~~~~~~a~~~~L~~~~~~d~~--i---v~l~~Dl~~~~g~~--~~~~~~~~~~gp-----~R~id~GIaE 93 (270)
..|..+. .-++=.+|+.+.+.+..+.|.. + -+++. +.|+- .+...|. ++.. +-+++-++.|
T Consensus 9 ~~~~~~~g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsg----YpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~NE 83 (1159)
T PRK13030 9 DRYTATRGRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSG----YRGSPLGGVDQALW-KAKKLLDASDIRFLPGINE 83 (1159)
T ss_pred hhhccccCCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEE----eCCCCHHHHHHHHH-HhhhhhcccceEEeecCCH
Confidence 3454442 2467788888888886666642 2 23332 22321 2223333 2201 2789999999
Q ss_pred hHHHHHHHHHhhcCCcc---------EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcc
Q 024237 94 AGFTGIGVGAAYYGLKP---------VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH 164 (270)
Q Consensus 94 ~~~vg~AaGlA~~G~~P---------i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~ 164 (270)
.-...++.|-++.|..| +++.= ..=+.|+-|.+++.. + +|...+=-++++..|-. |.+-||
T Consensus 84 kvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K-~~GvnvaaD~l~~~n-~----~G~~~~GG~v~v~gDDp----g~~SSq 153 (1159)
T PRK13030 84 ELAATAVLGTQQVEADPERTVDGVFAMWYGK-GPGVDRAGDALKHGN-A----YGSSPHGGVLVVAGDDH----GCVSSS 153 (1159)
T ss_pred HHHHHHHHHhccccccCCccccceEEEEecC-cCCcccchhHHHHHH-h----hcCCCCCcEEEEEecCC----CCccCc
Confidence 99999999999555555 66544 335789999998643 4 23323445555543311 111122
Q ss_pred hH--HHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 165 CY--AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 165 ~~--~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
.- --++...-+|-|+.|+|++|+..+.+++++ .+-||.+|.
T Consensus 154 ~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~ 200 (1159)
T PRK13030 154 MPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKA 200 (1159)
T ss_pred CHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11 122333346669999999999999998875 366999984
No 72
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.36 E-value=0.6 Score=46.30 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=67.5
Q ss_pred cccchhHHHHHHHHHhhcCCccEEEe-ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~Pi~~~-~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
..-.|+++..+|.|.|+.--+|-+++ .+..=+..++--+-+ + + ..+.||+++...-... +.+..+...
T Consensus 44 ~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d 114 (549)
T PRK06457 44 QVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD-A-K-------MDHAPVIALTGQVESDMIGHDYFQEVN 114 (549)
T ss_pred EeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH-H-H-------hcCCCEEEEecCCCccccCCCcccccc
Confidence 46789999999999999865664433 222333445555543 2 2 1589999986432221 222222112
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeeccccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLY 210 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~~~~~ 210 (270)
...+++.+-- ......+++++...++.|+ ...|||||-.|..++
T Consensus 115 ~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 115 LTKLFDDVAV-FNQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred hhhhhcccee-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 2478887644 3445566666666665554 347999998876554
No 73
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.19 E-value=2.6 Score=42.48 Aligned_cols=115 Identities=17% Similarity=0.034 Sum_probs=70.0
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
||+.+ --|+..+.+|.|.|+..-+| ++...+..=+.-++--|.+ + +. .++||+++....... +.+..
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~-A-~~-------d~~Pvl~i~G~~~~~~~~~~~~ 131 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIAT-A-QM-------DSVPMVVITGQVPRPAIGTDAF 131 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-Hh-------cCCCEEEEecCCCccccCCCCc
Confidence 67776 89999999999999985455 4433323333344445533 2 21 589999986542222 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~~ 210 (270)
|......+++.+- --.....+++++..+++.|++ . .||+||-.|..+.
T Consensus 132 Qe~d~~~~~~~vt-k~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 184 (616)
T PRK07418 132 QETDIFGITLPIV-KHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVG 184 (616)
T ss_pred ccccHHHHhhhcc-eeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhh
Confidence 2112237787663 223346777888777777665 3 4999998776543
No 74
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=94.07 E-value=0.11 Score=42.49 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=72.2
Q ss_pred Ceeeccc-chhHHHHHHHHHhhcCCccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCC
Q 024237 85 RVLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGA 160 (270)
Q Consensus 85 R~id~GI-aE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~ 160 (270)
.+.+++. .|+.-+|+++|..++|.+|-.-.|.+-+-. .++..+.. . .++|+.++.++ |....+=+
T Consensus 42 ~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~----t-------y~iPl~ml~ShRG~~~E~i~ 110 (172)
T COG4032 42 EIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYV----T-------YKIPLLMLASHRGVLKEGIE 110 (172)
T ss_pred CcccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHH----H-------hccchhhhhhccchhhcCCc
Confidence 3666665 689999999999999999988888664322 33333321 1 36787777654 43322112
Q ss_pred CC---cchHHHHHccCCCcEEEccCCHHHHHHHHHHh----HhCCCCeEEeecc
Q 024237 161 QH---SHCYAAWYASVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFLENE 207 (270)
Q Consensus 161 tH---~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a----~~~~~P~~ir~~~ 207 (270)
.+ .-....+++.+ ++.-+.|-.|+|+..++..+ +++..|+.++.+-
T Consensus 111 AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 111 AQVPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred cccccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 22 01234677776 77788899999977766664 5568899887543
No 75
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.01 E-value=2.4 Score=42.48 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=69.7
Q ss_pred CeeecccchhHHHHHHHHHhhcC-CccEEE-eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYG-LKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~-~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~ 160 (270)
|++.+ .-|++++.+|-|.|+.. .+|-++ ..+..-+..++--+.+ + + ..++||++++...... +.+.
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~ 113 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS-A-S-------ADSIPILCITGQAPRARLHKED 113 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCc
Confidence 67766 79999999999999986 556433 2223333334455543 2 2 2589999986532222 2222
Q ss_pred CCcch--HHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 161 tH~~~--~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
| |. ..++++.+=-. -....+++++...++.|++. +|||||-.|..+
T Consensus 114 -~-q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 114 -F-QAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred -c-cccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 3 43 24788876333 34457788887777776652 589999877544
No 76
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.98 E-value=1.4 Score=36.66 Aligned_cols=111 Identities=23% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehhhHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+++..+. +=...+++|.|.++.. .+|++++. .+-.. .....+ ..++. .++|++++. .++ ...
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~-GDG~f~~~~~el-~ta~~--------~~lpv~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVE-GDGAFGFSGMEL-ETAVR--------YNLPIVVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEE-cchhhcCCHHHH-HHHHH--------cCCCEEEEEEECccccc
Confidence 788888653 2233556777777765 46666664 33222 223444 33443 588877764 332 211
Q ss_pred C----C----CC-----CCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 G----V----GA-----QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ~----~----G~-----tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. . +. .+.. .+..+.++. |++-+.-.+.+|++.+++.+...++|++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 00 0111 223566665 777777889999999999999888999883
No 77
>PRK07064 hypothetical protein; Provisional
Probab=93.91 E-value=1.5 Score=43.29 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=66.7
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCC--CCCc
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG--AQHS 163 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G--~tH~ 163 (270)
....|+++..+|.|.|+.--+| ++...+..=+..++--|.+.. . .++||++++..-... +.+ ..|
T Consensus 46 ~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A~-~--------~~~Pvl~i~g~~~~~~~~~~~~~~~- 115 (544)
T PRK07064 46 PARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEAL-T--------AGTPLLHITGQIETPYLDQDLGYIH- 115 (544)
T ss_pred eeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHHH-h--------cCCCEEEEeCCCCcccccCCCcccc-
Confidence 3567999999999999874444 433322333444556665422 2 589999986532221 222 234
Q ss_pred ch--HHHHHccCCCcEEEccCCHHHHHHHHHHhH----hC-CCCeEEeecccc
Q 024237 164 HC--YAAWYASVPGLKVLSPYSSEDARGLLKAAI----RD-PDPVVFLENELL 209 (270)
Q Consensus 164 ~~--~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~-~~P~~ir~~~~~ 209 (270)
+. ...+++.+--. .....+++++...++.|+ .. ++||||-.|..+
T Consensus 116 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 116 EAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred cccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 42 35888877643 344456777666666555 33 689999877544
No 78
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.80 E-value=0.88 Score=45.17 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=68.8
Q ss_pred cccchhHHHHHHHHHhhcCCccEE-EeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~Pi~-~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~ 165 (270)
.-..|++.+.+|.|.|+..-+|-+ ...+..-+..++--|.+ + + ..++||++++..... .+.+..|...
T Consensus 51 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~q~~d 121 (557)
T PRK08199 51 VCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHT-A-F-------QDSTPMILFVGQVARDFREREAFQEID 121 (557)
T ss_pred EeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH-H-h-------hcCCCEEEEecCCccccCCCCcccccC
Confidence 346799999999999998655533 33223334445555543 2 3 258999998654222 1233333222
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccccC
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYG 211 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~~~ 211 (270)
..++++.+=-... ...+++++...++.|++ . +|||||..|..++.
T Consensus 122 ~~~l~~~~tk~~~-~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~ 171 (557)
T PRK08199 122 YRRMFGPMAKWVA-EIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLS 171 (557)
T ss_pred HHHhhhhhhceee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhh
Confidence 2378887654433 33677777776666654 3 58999988866543
No 79
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.78 E-value=1.6 Score=43.64 Aligned_cols=111 Identities=13% Similarity=-0.031 Sum_probs=65.6
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCC-CCCcch-
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHC- 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G-~tH~~~- 165 (270)
..--|++.+.+|-|.|+...+| +|...+..=+..+.--|.+. + ..++||+++.........+ .++ |.
T Consensus 43 ~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~~-q~i 112 (575)
T TIGR02720 43 QVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDA--K-------EDHVPVLALVGQVPTTGMNMDTF-QEM 112 (575)
T ss_pred EeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCCc-cee
Confidence 3467999999999999875555 44333333344455555442 3 2589999987543322222 223 33
Q ss_pred H-HHHHccCCCcEEEccCCHHHHH----HHHHHhHhCCCCeEEeeccccc
Q 024237 166 Y-AAWYASVPGLKVLSPYSSEDAR----GLLKAAIRDPDPVVFLENELLY 210 (270)
Q Consensus 166 ~-~a~lr~iPn~~V~~P~d~~e~~----~~l~~a~~~~~P~~ir~~~~~~ 210 (270)
+ .++++.+=-. .....+++++. .+++.+....+||||-.|..+.
T Consensus 113 d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 113 NENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred chhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 3 4778876322 23444555554 4555555568999998876543
No 80
>PRK05858 hypothetical protein; Provisional
Probab=93.72 E-value=0.79 Score=45.37 Aligned_cols=114 Identities=19% Similarity=0.115 Sum_probs=68.6
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccEEEe-ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~-~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. ..-|++++.+|.|.|+...+|-+++ .+..=+..++--|.+ + + ..++||++++...... +.|..
T Consensus 44 ~~i~-~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~ 113 (542)
T PRK05858 44 RLID-VRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAA-A-Q-------FNQSPLVVLGGRAPALRWGMGSL 113 (542)
T ss_pred CEEe-eccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHH-H-H-------hcCCCEEEEeCCCCcccCCCCCC
Confidence 4443 4689999999999999965664333 222233344445543 2 2 1589999986532221 22332
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
|......+++.+-- ......+++++...++.+++ . .|||||-.|...
T Consensus 114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 114 QEIDHVPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred cccchhhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 21112377887754 44555667777776666653 2 689999877654
No 81
>PLN02470 acetolactate synthase
Probab=93.71 E-value=1.7 Score=43.40 Aligned_cols=114 Identities=17% Similarity=-0.003 Sum_probs=71.0
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC--CCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~--~G~t 161 (270)
|++.+ --|++.+.+|.|.|+.--+| +|.+.+..=+..++--|-+. + ..++||++++....... .+..
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A--~-------~~~~Pvl~I~G~~~~~~~~~~~~ 122 (585)
T PLN02470 53 RNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADA--L-------LDSVPLVAITGQVPRRMIGTDAF 122 (585)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH--H-------hcCCcEEEEecCCChhhcCCCcC
Confidence 66666 78999999999999874344 44343334444555556442 3 25899999865322222 2222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
|.....++++.+=-. -....+++++..+++.|++. +|||||-.|..+
T Consensus 123 q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 123 QETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred cccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 212224777776432 33356788888888887653 689999877543
No 82
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.43 E-value=1.8 Score=43.23 Aligned_cols=112 Identities=20% Similarity=0.078 Sum_probs=69.8
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. .-.|++++.+|-|.|+...+| +|...+..=+..++--|.+ + + ..++||+++....... +.+.
T Consensus 44 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~- 112 (574)
T PRK06466 44 EHIL-VRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIAT-A-Y-------MDSIPMVVLSGQVPSTLIGEDA- 112 (574)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-H-------hcCCCEEEEecCCCccccCCCc-
Confidence 4444 489999999999999975555 4333322333445555543 2 2 2589999986532222 2223
Q ss_pred Ccch-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
| |. + ..+++.+--. .....+++++..+++.|++. +|||||..|..+
T Consensus 113 ~-q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 113 F-QETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred c-cccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 3 43 2 4788887553 44555788777777766643 689999877653
No 83
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.39 E-value=2 Score=42.82 Aligned_cols=123 Identities=20% Similarity=0.119 Sum_probs=73.8
Q ss_pred chhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC
Q 024237 74 SKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152 (270)
Q Consensus 74 ~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~ 152 (270)
.+.+.+ . +=+++.+ .-|++.+.+|.|.|+...+| ++.+.+..=+.-++--|.+ + + ..++||++++..
T Consensus 46 ~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~-A-~-------~~~~Pvl~ItG~ 113 (571)
T PRK07710 46 YDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLAD-A-M-------IDSLPLVVFTGQ 113 (571)
T ss_pred HHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-h-------hcCCCEEEEecc
Confidence 344532 3 4588866 89999999999999985454 4333223334445555543 2 2 258999998653
Q ss_pred CCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 153 GAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 153 G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
.... +.+..|.....++++.+--... ...+++++..+++.|++ . +|||||-.|..+
T Consensus 114 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 114 VATSVIGSDAFQEADIMGITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CCccccCCCCccccchhhhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 2221 2233232223478887744433 44567777766666654 2 589999877543
No 84
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.29 E-value=1.8 Score=43.52 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcC--CcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEEeehhhH
Q 024237 43 LNSALDEEMSAD--PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (270)
Q Consensus 43 ~~~~L~~~~~~d--~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f 119 (270)
..+.|.+.+++. +.|+.+-.+- ...+.+.+.+.- .=|++.+ --|++++.+|-|.|+. |...+|.+.+..=
T Consensus 13 ~a~~l~~~L~~~GV~~vFGvpG~~-----~~~l~dal~~~~-~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG 85 (595)
T PRK09107 13 GAEMVVQALKDQGVEHIFGYPGGA-----VLPIYDEIFQQD-DIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPG 85 (595)
T ss_pred HHHHHHHHHHHCCCCEEEEccCcc-----hHHHHHHHhhcC-CCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 355555555544 3444443321 112334453321 1266665 8999999999999976 5444544433333
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~ 197 (270)
+..++--|-+ + + ..++||++++...... +.+..|.....++++.+=- -.+...+++++..+++.|++.
T Consensus 86 ~~N~l~gia~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~ 155 (595)
T PRK09107 86 ATNAVTPLQD-A-L-------MDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHV 155 (595)
T ss_pred HhHHHHHHHH-H-h-------hcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHH
Confidence 3444555543 2 2 2589999986542222 2222221122477776533 233456788888877777653
Q ss_pred -----CCCeEEeecccc
Q 024237 198 -----PDPVVFLENELL 209 (270)
Q Consensus 198 -----~~P~~ir~~~~~ 209 (270)
+|||||-.|..+
T Consensus 156 A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 156 ATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hcCCCCceEEEecCCCh
Confidence 689999877654
No 85
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.29 E-value=1.5 Score=43.83 Aligned_cols=115 Identities=15% Similarity=0.015 Sum_probs=70.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~ 163 (270)
|++. .--|++.+.+|-|.|+..-+| ++...+..=+..++--|-+ + + ..++||+++.........+....
T Consensus 54 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~ 123 (570)
T PRK06725 54 KHIL-TRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLAD-A-Y-------MDSIPLVVITGQVATPLIGKDGF 123 (570)
T ss_pred cEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH-H-h-------hcCcCEEEEecCCCcccccCCCC
Confidence 5554 468999999999999874344 4433323334445555543 2 2 25899999865322222222112
Q ss_pred ch-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeeccccc
Q 024237 164 HC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (270)
Q Consensus 164 ~~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~~ 210 (270)
|. + ..+++.+=-. .....+++++..+++.|++. +|||||..|..+.
T Consensus 124 q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 124 QEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred cccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 33 2 3788877443 34456788888888887753 6899998775543
No 86
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.21 E-value=0.91 Score=37.91 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
..-.|++.+.+|-|.|+.--+| ++......-+..+.--|.+.. . .+.||+++....... +.+..|...
T Consensus 40 ~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~-~--------~~~Pvl~i~g~~~~~~~~~~~~q~~d 110 (162)
T cd07037 40 VRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAY-Y--------SGVPLLVLTADRPPELRGTGANQTID 110 (162)
T ss_pred eccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHH-h--------cCCCEEEEECCCCHHhcCCCCCcccc
Confidence 3568999999999999985566 433333334445555665432 2 589999997543322 223322222
Q ss_pred HHHHHccCCCc--EEEccCC-------HHHHHHHHHHhHhC-CCCeEEee
Q 024237 166 YAAWYASVPGL--KVLSPYS-------SEDARGLLKAAIRD-PDPVVFLE 205 (270)
Q Consensus 166 ~~a~lr~iPn~--~V~~P~d-------~~e~~~~l~~a~~~-~~P~~ir~ 205 (270)
..++++.+=-. +|-.|.+ +..+..+++.+... +||+||-.
T Consensus 111 ~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 111 QVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred hhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 23777766433 2223333 34444455555443 68999853
No 87
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.15 E-value=3.8 Score=37.76 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=65.9
Q ss_pred eeecccchhHHHHHHHHHhhc----CC-ccEEEeeh-hhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CC---C
Q 024237 86 VLDTPITEAGFTGIGVGAAYY----GL-KPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA---A 155 (270)
Q Consensus 86 ~id~GIaE~~~vg~AaGlA~~----G~-~Pi~~~~~-~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~---~ 155 (270)
+..+-..=.+..++|.|++.. +. .+++.+.- ..+..-.+..+.+-+ + .+.+++++.-| +. +
T Consensus 64 ~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~-~--------r~~ni~~ivlDNe~Y~nT 134 (299)
T PRK11865 64 VPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAM-E--------RGHNILYLMYDNEAYMNT 134 (299)
T ss_pred cccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHH-H--------cCCCeEEEEECCccccCC
Confidence 333333344667777777765 43 24444321 145667777886644 4 35666665332 11 1
Q ss_pred CC--CCC---------CC-----------cchHHHHH--ccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 156 AG--VGA---------QH-----------SHCYAAWY--ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 156 ~~--~G~---------tH-----------~~~~~a~l--r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
++ ... ++ -..+..++ ...|-+....|+++.|+...++.+.+.+||++|..
T Consensus 135 GgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v 208 (299)
T PRK11865 135 GIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQV 208 (299)
T ss_pred CCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 110 00 01223444 56677788899999999999999999999999953
No 88
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.07 E-value=3.3 Score=37.93 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccch---hHHHHHHHHHhhcC-CccEEEe
Q 024237 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF 114 (270)
Q Consensus 39 ~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE---~~~vg~AaGlA~~G-~~Pi~~~ 114 (270)
.-.++.++|.++-....+.++++ |++.+. +. | ++++..--- ...+.+|.|+++.. -+|++++
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivs-diGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVS-GIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE-CCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 45677777777655445655554 665321 12 4 566644321 23556777777764 4666665
Q ss_pred ehhh--HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCC---CCC-------CCC-C----Cc-----chH--HHH
Q 024237 115 MTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA---AAG-------VGA-Q----HS-----HCY--AAW 169 (270)
Q Consensus 115 ~~~~--f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~---~~~-------~G~-t----H~-----~~~--~a~ 169 (270)
. .+ |..-....+.+ +++ .|+|++++.. ++. ..+ .|. + +. ... .++
T Consensus 78 ~-GDG~f~~mg~~eL~t-A~r--------~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~ 147 (287)
T TIGR02177 78 G-GDGDLYGIGGNHFVA-AGR--------RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI 147 (287)
T ss_pred e-CchHHHhccHHHHHH-HHH--------hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence 4 43 22244555654 434 4788887643 221 111 010 0 00 011 244
Q ss_pred HccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 170 lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.....-.-.....+++|+..+++.+++.++|++|-
T Consensus 148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44443233333699999999999999999999885
No 89
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.75 E-value=2.4 Score=35.49 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred hCCCCee-ecccchh-HHHHHHHHHhhcCCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC
Q 024237 81 YGPERVL-DTPITEA-GFTGIGVGAAYYGLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA 156 (270)
Q Consensus 81 ~gp~R~i-d~GIaE~-~~vg~AaGlA~~G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~ 156 (270)
..|.+++ +.|..-. .-++.|.|.++.--+|++++.-- .|.+- ...+- .+. +.++|++++. .++.++
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~-~~eL~-ta~--------~~~l~v~ivVlNN~~~g 108 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHD-LNGLL-LGK--------QEPLNLTIVVINNNGGG 108 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHh-HHHHH-hcc--------ccCCCeEEEEEECCCCc
Confidence 3377888 4443321 23466666655546777766422 22222 22221 222 2578887764 333211
Q ss_pred --CC------CC---C-----CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 --GV------GA---Q-----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 --~~------G~---t-----H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.. +. . |...+.++.+++ |+.-+.-.+++|++..|+.+++.++|++|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 171 (175)
T cd02009 109 IFSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred hheeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 00 0 111234666665 677777889999999999999989999883
No 90
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.73 E-value=2.2 Score=42.67 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHhhcCCccEEEe-ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHH
Q 024237 91 ITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYA 167 (270)
Q Consensus 91 IaE~~~vg~AaGlA~~G~~Pi~~~-~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~ 167 (270)
--|++++.+|-|.|+...+|-+++ ....=+..+.--|.+ + + ..++||+++....... +.|..|.....
T Consensus 48 rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~ 118 (578)
T PRK06546 48 RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD-A-H-------RSGAPVLAIASHIPSAQIGSGFFQETHPD 118 (578)
T ss_pred CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH-H-H-------hcCCCEEEEeCCCCccccCCCCccccChh
Confidence 479999999999999955564433 222223344455543 2 2 1589999986532222 23333311224
Q ss_pred HHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeeccccc
Q 024237 168 AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (270)
Q Consensus 168 a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~~~~~ 210 (270)
.+++.+=- ..+...+++++...++.|++ .+|||||-.|..+.
T Consensus 119 ~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~ 164 (578)
T PRK06546 119 RLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIA 164 (578)
T ss_pred hhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhh
Confidence 77776522 44566777777766666554 47899998776543
No 91
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.71 E-value=1.5 Score=43.49 Aligned_cols=114 Identities=19% Similarity=0.076 Sum_probs=69.5
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++.+ ..|++.+.+|.|.|+.--+| ++.+.+..=+..++--+.+ + + ...+||++++...... +.+..
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~ 109 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD-A-L-------LDSVPVVAITGQVSSPLIGTDAF 109 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCCC
Confidence 45444 79999999999999984455 4433333334445555644 2 2 2589999986542221 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
+.....++++.+--..... .+++++..+++.+++ .++||||-.|..+
T Consensus 110 q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 110 QEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred cccchhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 2112237788775544443 477877777777664 2589999877543
No 92
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.65 E-value=1.9 Score=43.29 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=68.7
Q ss_pred CeeecccchhHHHHHHHHHhhcC-CccEEE-eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYG-LKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~-~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~ 160 (270)
|++. .--|++++.+|-|.|+.. .+|=++ ..+..=...++-.|.+ + + ..++||+++...-... +.+.
T Consensus 43 ~~V~-~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~ 112 (588)
T TIGR01504 43 RHIL-ARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS-A-S-------ADSIPILCITGQAPRARLHKED 112 (588)
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCc
Confidence 4433 456999999999999974 566443 2222223334555543 2 2 2589999986432222 2222
Q ss_pred CCcch--HHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 161 tH~~~--~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
+ |. ..++++.+=-. .....+++++...++.|++ .+|||||-.|+.+.
T Consensus 113 -~-q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 113 -F-QAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred -c-cccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 3 33 24888887543 3344578888877777765 25799998876544
No 93
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.59 E-value=2.9 Score=41.68 Aligned_cols=110 Identities=12% Similarity=0.000 Sum_probs=63.9
Q ss_pred cchhHHHHHHHHHhhcCCccEEEee-hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHH
Q 024237 91 ITEAGFTGIGVGAAYYGLKPVVEFM-TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYA 167 (270)
Q Consensus 91 IaE~~~vg~AaGlA~~G~~Pi~~~~-~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~ 167 (270)
--|++++-+|-|.|+..-+|-+++- +..=...+.--|-+ + + ...+||+++..+.... +.|..+.....
T Consensus 48 rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~ 118 (574)
T PRK09124 48 RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFD-C-H-------RNHVPVLAIAAHIPSSEIGSGYFQETHPQ 118 (574)
T ss_pred CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHH-H-h-------hcCCCEEEEecCCccccCCCCCccccChh
Confidence 4899999999999999656655442 11222334444533 2 2 2589999986543222 22332212234
Q ss_pred HHHccCCCcEEEccCCHHHHHHHH----HHhHhCCCCeEEeeccccc
Q 024237 168 AWYASVPGLKVLSPYSSEDARGLL----KAAIRDPDPVVFLENELLY 210 (270)
Q Consensus 168 a~lr~iPn~~V~~P~d~~e~~~~l----~~a~~~~~P~~ir~~~~~~ 210 (270)
.+++.+--. .....+++++...+ +.+....+||||-.|..+.
T Consensus 119 ~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~ 164 (574)
T PRK09124 119 ELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVA 164 (574)
T ss_pred hhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 788866432 23355666655544 4445457899998776543
No 94
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.51 E-value=2 Score=36.11 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=65.4
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.||+..+- +=-..+..|.|.++. .-+|++++.-- .|.+- ...|. .+.+ .++|++++. .++..+-
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~-~~eL~-ta~~--------~~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMN-SQELE-TAVR--------LKIPLVVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhH-HHHHH-HHHH--------HCCCeEEEEEECCcchH
Confidence 778887533 112234566666655 45677666422 23322 23332 2433 478888874 3322110
Q ss_pred --------CCC-CC----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 --------VGA-QH----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 --------~G~-tH----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+. .+ ...+.++-++. |++-+.-.+++|++.+++.+++.++|.+|-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~liev 167 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVIDC 167 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 010 11 01223566666 7888888999999999999999999999853
No 95
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.50 E-value=3 Score=41.52 Aligned_cols=114 Identities=18% Similarity=0.051 Sum_probs=69.1
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
+++.+ ..|++.+.+|-|.|+.--+| ++...+..=+.-++--|.+ + + ..++||++++...... +.+..
T Consensus 47 ~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~ 116 (561)
T PRK06048 47 RHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIAT-A-Y-------MDSVPIVALTGQVPRSMIGNDAF 116 (561)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEeccCCccccCCCCc
Confidence 56655 89999999999999874455 4333323334445556654 2 2 2589999986432222 22332
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
|.....++++.+=-. .+.-.++.++..+++.|++ .+|||||..|..+
T Consensus 117 q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 117 QEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred cccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 312223777776432 2334667777777777665 2689999877543
No 96
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.39 E-value=3.7 Score=40.71 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=80.5
Q ss_pred HHHHHHHhhcC--CcEEEEecCCCCCCCccccchhhHhhhCC-CCeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhH
Q 024237 44 NSALDEEMSAD--PKVFLMGEEVGEYQGAYKISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNF 119 (270)
Q Consensus 44 ~~~L~~~~~~d--~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp-~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f 119 (270)
++.|.+.+++. +.++.+-.|- ...+.+.+.+ . + =|++. .--|+++.-+|.|.|+.--+| +|...+..=
T Consensus 3 ~~~l~~~L~~~Gv~~vFGvpG~~-----~~~l~~al~~-~-~~i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 74 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGIPGDF-----ALPFFKVIEE-T-GILPLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAG 74 (535)
T ss_pred HHHHHHHHHHcCCCEEEECCCcc-----cHHHHHHHhh-C-CCCeEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchH
Confidence 45566655544 3444443321 1123344432 2 2 25554 789999999999999984444 444433333
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCC-CCcch----H-HHHHccCCCcE--EEccCC-HHHHH
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-QHSHC----Y-AAWYASVPGLK--VLSPYS-SEDAR 188 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~-tH~~~----~-~a~lr~iPn~~--V~~P~d-~~e~~ 188 (270)
...+.--|-. + + ..++||+++...-... +.+. .|+|. + ..+++.+=-.. |..|.+ ++.+.
T Consensus 75 ~~n~~~gia~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~ 145 (535)
T TIGR03394 75 AFNMVNAIAG-A-Y-------AEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIA 145 (535)
T ss_pred HHhhhhHHHH-H-h-------hcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHH
Confidence 3444455543 2 2 2589999986532222 2232 13243 2 36777653322 223333 33445
Q ss_pred HHHHHhHhCCCCeEEeeccccc
Q 024237 189 GLLKAAIRDPDPVVFLENELLY 210 (270)
Q Consensus 189 ~~l~~a~~~~~P~~ir~~~~~~ 210 (270)
.+++.+...++|+||-.|+.+.
T Consensus 146 ~A~~~a~~~~gPv~i~iP~Dv~ 167 (535)
T TIGR03394 146 RVLGSARELSRPVYLEIPRDMV 167 (535)
T ss_pred HHHHHHHHCCCCEEEEechhhc
Confidence 5666666668899998876544
No 97
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.32 E-value=1.7 Score=43.40 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=65.4
Q ss_pred ccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCC-CCCcch-H
Q 024237 90 PITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHC-Y 166 (270)
Q Consensus 90 GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G-~tH~~~-~ 166 (270)
.--|++++.+|.|.|+. |...+|...+..=+..++--|-+ + + ..++||+++...-.....| ..| |. +
T Consensus 45 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~-A-~-------~~~~Pvl~I~g~~~~~~~~~~~~-Q~~d 114 (579)
T TIGR03457 45 VVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA-A-Y-------WAHTPVVIVTPEAGTKTIGLGGF-QEAD 114 (579)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH-H-h-------hcCCCEEEEeCCCccccCCCCCC-cccc
Confidence 46899999999999987 54444433223333344555543 2 2 1589999996432222211 224 43 3
Q ss_pred -HHHHccCCCcEEEccCCHHHHHHHHHHhH----hCCCCeEEeeccccc
Q 024237 167 -AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLY 210 (270)
Q Consensus 167 -~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~~~P~~ir~~~~~~ 210 (270)
..+++.+=- -.....+++++...++.|+ ...|||||-.|+.+.
T Consensus 115 ~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 115 QLPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred hhhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 378887644 3344456676666665554 446899998876544
No 98
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.29 E-value=5.3 Score=36.42 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=82.8
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcC-CccEEEe
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEF 114 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~~ 114 (270)
.-....++.++|.++-....+.++++ |++-+. ....+.+ -..+.... ...+.+|.|+++.. -++++.+
T Consensus 15 ~~~il~al~~al~~l~~~~~~~ivvs-diGc~~----~~~~~~~----~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i 83 (279)
T PRK11866 15 NYGILEALRKALAELGIPPENVVVVS-GIGCSS----NLPEFLN----TYGIHGIH--GRVLPIATGVKWANPKLTVIGY 83 (279)
T ss_pred ChHHHHHHHHHHHHhcCCCCCEEEEE-CCchhh----hhhhhcc----CCCccccc--ccHHHHHHHHHHHCCCCcEEEE
Confidence 34456777777766654445655554 555322 1111211 11122222 45567778877763 4666665
Q ss_pred ehhh-HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC---CCC-------CC----C-Cc-----chHHHHHcc
Q 024237 115 MTFN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA---AGV-------GA----Q-HS-----HCYAAWYAS 172 (270)
Q Consensus 115 ~~~~-f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~---~~~-------G~----t-H~-----~~~~a~lr~ 172 (270)
.--- +..-....+.+ +++ .|+|++++.- ++.+ .+. |. + +. ..+..+.++
T Consensus 84 ~GDG~~f~ig~~eL~t-A~r--------rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a 154 (279)
T PRK11866 84 GGDGDGYGIGLGHLPH-AAR--------RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALA 154 (279)
T ss_pred ECChHHHHccHHHHHH-HHH--------HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHH
Confidence 4332 45667777866 444 4777777643 2211 110 00 0 00 022344443
Q ss_pred --CCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 173 --VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 173 --iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.+....+.+++|++.+++.+++.++|++|-
T Consensus 155 ~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 155 AGATFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44445666799999999999999999999985
No 99
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.11 E-value=3.7 Score=34.61 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=65.6
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..+- . =-..++.|.|.++.. -++++++.-- .|.+. ...|- .+++ .++|++++.- ++.++
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~-~~eL~-ta~~--------~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMN-IQELA-TAAQ--------YNLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhcc-HHHHH-HHHH--------hCCCeEEEEEECCccHH
Confidence 778887543 2 123456777777663 4566655422 33333 33343 2444 4788887643 33221
Q ss_pred ----------C-CC-CCCc-c-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ----------G-VG-AQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ----------~-~G-~tH~-~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .. ..+. . .+..+.+++ |+.-..-.+++|++.+++.+.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01 1111 1 234666666 777777788999999999999989999984
No 100
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.08 E-value=1.4 Score=43.62 Aligned_cols=114 Identities=19% Similarity=0.088 Sum_probs=69.7
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. .-.|++++.+|-|.|+.--+| ++.+.+..=+.-++--|.+ + + ..++||+++..+-... +.+..
T Consensus 41 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~ 110 (558)
T TIGR00118 41 EHIL-VRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIAT-A-Y-------MDSIPMVVFTGQVPTSLIGSDAF 110 (558)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-H-H-------hcCCCEEEEecCCCccccCCCCC
Confidence 4443 468999999999999874444 4433333334445555543 2 2 2589999987543222 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
+.....++++.+=-.. ....+++++..+++.|++. .+||||-.|..+
T Consensus 111 q~~d~~~~~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 111 QEADILGITMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred cccChhhhhcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 2112237888765433 3346788888877777653 589999877654
No 101
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.07 E-value=1.9 Score=42.98 Aligned_cols=115 Identities=23% Similarity=0.115 Sum_probs=72.4
Q ss_pred CeeecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. .-.|++.+.+|.|.|+. |...+|.+.+..=+..+.--|.+ + + ..++||+++....... +.+..
T Consensus 44 ~~i~-~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~ 113 (574)
T PRK07979 44 DHVL-VRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT-A-Y-------MDSIPLVVLSGQVATSLIGYDAF 113 (574)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH-H-h-------hcCCCEEEEECCCChhccCCCCC
Confidence 3443 56799999999999987 65555554333334445555543 2 2 2589999986542222 23333
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
|.....++++.+=- -.....+++++...++.|++ ..||+||..|....
T Consensus 114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 114 QECDMVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred ceecHHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 32233478887644 34445688888888887775 26899998776543
No 102
>PRK08617 acetolactate synthase; Reviewed
Probab=91.98 E-value=2.5 Score=41.90 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=67.3
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~ 165 (270)
.-..|++++.+|.|.|+..-+| +|..-+..=+..++--+.+ + + ..++||++++..... .+.+..|...
T Consensus 47 ~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~-A-~-------~~~~PvlvisG~~~~~~~~~~~~q~~d 117 (552)
T PRK08617 47 VTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVT-A-T-------AEGDPVVAIGGQVKRADRLKRTHQSMD 117 (552)
T ss_pred EeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHH-H-h-------hcCCCEEEEecCCcccccCCCCccccc
Confidence 3468999999999999985555 3332222233345555543 2 2 258999998643111 1223323112
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
...+++.+-- ......+++++...++.|++ . .|||||-.|..+
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 118 NVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 2478888743 45555677787777776665 2 579999877544
No 103
>PRK08266 hypothetical protein; Provisional
Probab=91.90 E-value=2.9 Score=41.25 Aligned_cols=111 Identities=17% Similarity=0.100 Sum_probs=67.4
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCC--CCCc
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG--AQHS 163 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G--~tH~ 163 (270)
.-..|++++.+|-|.|+..-+| ++...+..=+..++--|-+ + + ...+||+++...-.. .+.| .+|
T Consensus 48 ~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~- 117 (542)
T PRK08266 48 HTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLT-A-Y-------GCNSPVLCLTGQIPSALIGKGRGHLH- 117 (542)
T ss_pred eeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH-H-H-------hhCCCEEEEecCCChhhccCCCCcce-
Confidence 3578999999999999985455 3332223334445555643 3 2 258999998653221 1222 234
Q ss_pred ch-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 164 HC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 164 ~~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
+. + ..+++.+-- ......+++++...++.|++ ..|||||-.|..+.
T Consensus 118 ~~~d~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~ 170 (542)
T PRK08266 118 EMPDQLATLRSFTK-WAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVF 170 (542)
T ss_pred ecccHhhHHhhhcc-eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhHh
Confidence 43 3 478887754 34445566776666666554 36899998775443
No 104
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=91.89 E-value=7.2 Score=33.16 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCeeecccchhHHHHHHHHHhhcC-CccEEEeehhhHHH-HHHHHHHHHHhhccccCCCCCCC-CEEEE-ecCCCCCCC
Q 024237 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISV-PIVFR-GPNGAAAGV 158 (270)
Q Consensus 83 p~R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~~-ra~dqi~~~~a~~~~~sg~~~~~-pvi~~-~~~G~~~~~ 158 (270)
|++|+..|-.=. .++.|.|+++.. -+|++++. .+-.. .....+ ..++. .++ |++++ ..++.++-.
T Consensus 41 ~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i~-GDG~f~m~~~eL-~ta~~--------~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 41 AQDFLTVGSMGH-ASQIALGIALARPDRKVVCID-GDGAALMHMGGL-ATIGG--------LAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCceeecCcccc-HHHHHHHHHHhCCCCcEEEEe-CCcHHHhhccHH-HHHHH--------cCCCCcEEEEEeCchhhcc
Confidence 588887533222 346777777653 46666654 33222 122333 23433 344 45444 344332111
Q ss_pred C--CC--CcchHHHHHccCCCcEE-EccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 159 G--AQ--HSHCYAAWYASVPGLKV-LSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 159 G--~t--H~~~~~a~lr~iPn~~V-~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
+ .+ +...+..+.+++ |+.- ....+++|++.+++.+++.++|++|..
T Consensus 110 ~~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIev 160 (188)
T cd03371 110 GGQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIEV 160 (188)
T ss_pred CCcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 11 112334666666 6653 456799999999999999889999853
No 105
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=91.75 E-value=5.1 Score=34.41 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=31.1
Q ss_pred HHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 167 ~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.++.++. |++-+.-.+++|++.+++.+++.++|++|-
T Consensus 144 ~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 144 AANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 3566665 777777899999999999999999999884
No 106
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=91.64 E-value=4.6 Score=33.75 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=67.9
Q ss_pred hHhhhCCCCeeeccc-ch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-
Q 024237 77 LLEKYGPERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP- 151 (270)
Q Consensus 77 ~~~~~gp~R~id~GI-aE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~- 151 (270)
+.-+. |.+++..+. .- ...++.|.|.++.. .++++++.-- .|.+-. ..+- .+.+ .++|++++.-
T Consensus 36 ~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~-~el~-t~~~--------~~lp~~~iv~N 104 (178)
T cd02014 36 LRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLM-GDLI-TAVK--------YNLPVIVVVFN 104 (178)
T ss_pred cccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhH-HHHH-HHHH--------hCCCcEEEEEE
Confidence 33345 678887643 22 12455666666653 3566655421 333333 2343 3444 4788877643
Q ss_pred CCCCC---------C---CCCCC-cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 152 NGAAA---------G---VGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 152 ~G~~~---------~---~G~tH-~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
++..+ + .+... ...+..+.++. |++.+...+++|++..++.+.+.++|++|-
T Consensus 105 N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 105 NSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred CCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 43221 0 11111 12334677776 888888999999999999999989999884
No 107
>PRK12474 hypothetical protein; Provisional
Probab=91.63 E-value=4.3 Score=39.93 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=69.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCC-CC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QH 162 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~-tH 162 (270)
|++. ---|++.+.+|-|.|+.--+| +|.+.+..=...++--|-+. + .-.+||+++.........+. .|
T Consensus 45 ~~i~-~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A--~-------~d~~Pvl~i~G~~~~~~~~~~~~ 114 (518)
T PRK12474 45 RPVL-CLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNA--R-------RAASPIVNIVGDHAVEHLQYDAP 114 (518)
T ss_pred eEEE-ecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHH--h-------hcCCCEEEEeccCchhhcCCCCc
Confidence 4443 468999999999999984455 44433222233444444332 2 25899999864322211111 22
Q ss_pred cchH-HHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 163 SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 163 ~~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
.+.+ .++++.+-- ......+++++..+++.|++ ..+||||-.|+.+.
T Consensus 115 q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 115 LTSDIDGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred cccCHHHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 1223 478887643 34456888888888888774 25899998876543
No 108
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.58 E-value=6.4 Score=39.27 Aligned_cols=114 Identities=19% Similarity=0.082 Sum_probs=68.9
Q ss_pred CeeecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++.+ -.|++++.+|.|.|+. |...++...+..=...+.--|-+. + ...+||+++....... +.+..
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~A--~-------~~~~Pvl~i~G~~~~~~~~~~~~ 113 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIATA--Y-------MDSIPMVVLSGQVPSNLIGNDAF 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHHH--h-------hcCCCEEEEecCCCccccCCCCC
Confidence 55554 7999999999999987 543344332222233344445432 2 2589999986432221 23333
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
|.....++++.+=-. .....+++++...++.|++ ..+||||-.|..+
T Consensus 114 q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 114 QECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred cccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 322234788876443 3445578888877777765 2589999877554
No 109
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=91.50 E-value=3.7 Score=34.04 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=64.5
Q ss_pred ecccchhHHHHHHHHHhhcCCccEEEee-hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCC-CCc
Q 024237 88 DTPITEAGFTGIGVGAAYYGLKPVVEFM-TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-QHS 163 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~G~~Pi~~~~-~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~-tH~ 163 (270)
-.--.|++.+.+|.|.++.- +|-+++. ...=+..+...|.+.. . ..+||++++...... +.+. .|.
T Consensus 39 i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~-~--------~~~Pvl~i~g~~~~~~~~~~~~~~~ 108 (162)
T cd07038 39 VGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAY-A--------EHVPVVHIVGAPSTKAQASGLLLHH 108 (162)
T ss_pred EeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHH-H--------cCCCEEEEecCCCccccccccceee
Confidence 35678999999999999987 5644332 2233445666665432 2 589999997542211 1111 121
Q ss_pred ------chH-HHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEeec
Q 024237 164 ------HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (270)
Q Consensus 164 ------~~~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~~ 206 (270)
+.+ .++++.+=.. .....+++++..+++.|++ .++|+||-.|
T Consensus 109 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 109 TLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred cccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 123 4778776443 3334566777766666554 4689999544
No 110
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.40 E-value=7.1 Score=33.03 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHh-hhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhh
Q 024237 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (270)
Q Consensus 40 ~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~-~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~ 118 (270)
|+++-++|.+.+. ..+++. |.+... ..+.. ...|.+++..|--=. .++.|.|.++.--+|++++. .+
T Consensus 1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~-GD 68 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVID-GD 68 (181)
T ss_pred CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEE-cc
Confidence 4566777777773 333332 444321 11222 222778886443222 24577777665466777664 43
Q ss_pred HHH-HHHHHHHHHHhhccccCCCCCC-CCEEEEe-cCCCCCCCC-----CCCcchHHHHHccCCCcEEEc-cCCHHHHHH
Q 024237 119 FSM-QAIDHIINSAAKSNYMSSGQIS-VPIVFRG-PNGAAAGVG-----AQHSHCYAAWYASVPGLKVLS-PYSSEDARG 189 (270)
Q Consensus 119 f~~-ra~dqi~~~~a~~~~~sg~~~~-~pvi~~~-~~G~~~~~G-----~tH~~~~~a~lr~iPn~~V~~-P~d~~e~~~ 189 (270)
-.. .....+ ..++. .+ +|++++. .++.++-.+ .++...+.++.++. |+.-.. ..+++|++.
T Consensus 69 G~f~m~~~el-~ta~~--------~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 69 GSLLMNLGVL-PTIAA--------ESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD 138 (181)
T ss_pred hHHHhhhhHH-HHHHH--------hCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence 222 222333 33433 35 4887764 333222111 11112234666665 665555 788999999
Q ss_pred HHHHhHhCCCCeEEee
Q 024237 190 LLKAAIRDPDPVVFLE 205 (270)
Q Consensus 190 ~l~~a~~~~~P~~ir~ 205 (270)
+|+ +++.++|++|-.
T Consensus 139 al~-a~~~~~p~li~v 153 (181)
T TIGR03846 139 ALK-ALAMKGPTFIHV 153 (181)
T ss_pred HHH-HHcCCCCEEEEE
Confidence 997 888889999853
No 111
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=91.35 E-value=7.3 Score=35.61 Aligned_cols=146 Identities=17% Similarity=0.064 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecc-c--chhHHHHHHHHHhhcC-CccE
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPV 111 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~G-I--aE~~~vg~AaGlA~~G-~~Pi 111 (270)
....-.++.++|.++.....+.++++ |++-+. .+ + ++++.+ + .=...+.+|.|+++.. -+++
T Consensus 25 ~~~il~~l~~al~~l~~~p~d~vvvs-diGc~~-----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~V 90 (286)
T PRK11867 25 DGSILAALQRALAELGLDPENVAVVS-GIGCSG-----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTV 90 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCCcEEEEe-CCcccc-----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcE
Confidence 44567777788777655555666654 565321 11 2 344432 1 1133456777777663 4666
Q ss_pred EEeehhh-HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC---CC-C------CC----C-Cc-----chHHHH
Q 024237 112 VEFMTFN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA---AG-V------GA----Q-HS-----HCYAAW 169 (270)
Q Consensus 112 ~~~~~~~-f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~---~~-~------G~----t-H~-----~~~~a~ 169 (270)
+++.--- +.+-....+.+ +++ .++|++++.- ++.+ .+ . |. + +. ....++
T Consensus 91 V~i~GDG~~f~mg~~eL~t-A~r--------~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~l 161 (286)
T PRK11867 91 IVVTGDGDALAIGGNHFIH-ALR--------RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVEL 161 (286)
T ss_pred EEEeCccHHHhCCHHHHHH-HHH--------hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHH
Confidence 6654222 34455566655 434 4788777643 2211 11 0 10 0 10 112355
Q ss_pred HccCCCcEE--EccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 170 YASVPGLKV--LSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 170 lr~iPn~~V--~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+...-.| ....+++|+..+++.+++.++|++|-
T Consensus 162 A~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 162 ALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred HHHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 555533223 36889999999999999999999984
No 112
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.10 E-value=10 Score=33.48 Aligned_cols=111 Identities=16% Similarity=0.059 Sum_probs=63.7
Q ss_pred CCCeeecccchhHHHHHHHHHhhc----------CCccEEEeehhhHH--HHHHHHHHHHHhhccccCCCCCCCCEEEEe
Q 024237 83 PERVLDTPITEAGFTGIGVGAAYY----------GLKPVVEFMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRG 150 (270)
Q Consensus 83 p~R~id~GIaE~~~vg~AaGlA~~----------G~~Pi~~~~~~~f~--~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~ 150 (270)
|.++++..+.-...+|.+...|.. --+|++++. .+-. ...+..+-+.+ . .++|++++.
T Consensus 52 ~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~-GDG~~~~~g~~~l~ta~-~--------~~l~i~ivV 121 (237)
T cd02018 52 AVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIG-GDGATYDIGFGALSHSL-F--------RGEDITVIV 121 (237)
T ss_pred CCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEe-CchHHHhccHHHHHHHH-H--------cCCCeEEEE
Confidence 566777765555666554444432 136677664 4442 23455554433 3 367777764
Q ss_pred c-CCCCCCCC----------C----C------CcchHHHHHccCCCcEEE---ccCCHHHHHHHHHHhHh-CCCCeEEe
Q 024237 151 P-NGAAAGVG----------A----Q------HSHCYAAWYASVPGLKVL---SPYSSEDARGLLKAAIR-DPDPVVFL 204 (270)
Q Consensus 151 ~-~G~~~~~G----------~----t------H~~~~~a~lr~iPn~~V~---~P~d~~e~~~~l~~a~~-~~~P~~ir 204 (270)
- ++.++-.+ . + |...+..+.+++ |+.-+ .+.+++|++.+++.+++ .++|++|-
T Consensus 122 lNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~-G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 122 LDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH-GCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred ECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC-CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3 32211111 0 0 111233555555 44444 59999999999999997 99999984
No 113
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.09 E-value=2.2 Score=39.38 Aligned_cols=35 Identities=23% Similarity=-0.029 Sum_probs=30.5
Q ss_pred ccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 171 r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+|-+....|+++.|+...++.|++.+||.+|..
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~ 204 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHL 204 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 45566778899999999999999999999999953
No 114
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=91.07 E-value=2.5 Score=42.13 Aligned_cols=112 Identities=15% Similarity=0.030 Sum_probs=68.7
Q ss_pred cccchhHHHHHHHHHhhcCCccEEEe-ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~Pi~~~-~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
...-|++++.+|.|.|+.--+|-+++ .+..-+..++--|.+. + ..++||+++....... +.+..|...
T Consensus 48 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d 118 (572)
T PRK06456 48 LMRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITA--Y-------WDSSPVIAITGQVPRSVMGKMAFQEAD 118 (572)
T ss_pred EeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHH--H-------hhCCCEEEEecCCCccccCCCCccccc
Confidence 45679999999999999854554332 2233344456666542 2 1589999986532221 223322222
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeeccccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
..++++.+--...- ..+++++...++.|++ ..|||||-.|..+.
T Consensus 119 ~~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 119 AMGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred hhhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 24788877554443 3677787777766664 36899998776543
No 115
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=90.90 E-value=2.6 Score=34.24 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCCeeec--ccchhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDT--PITEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~--GIaE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+.. .-+=...++.|.|.++.. -++++.+.-- .|.+- ...|.. +.+ .++|++++.- ++..+
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el~t-a~~--------~~~~v~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQELAT-AVR--------YGLPVVIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGHHH-HHH--------TTSSEEEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchhHH-Hhh--------ccceEEEEEEeCCcceE
Confidence 7788872 334456677888888873 4566655422 23333 344433 333 4778887643 22110
Q ss_pred ------CCCC----------CCcchHHHHHccCCCcEEEccCCH--HHHHHHHHHhHhCCCCeEE
Q 024237 157 ------GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF 203 (270)
Q Consensus 157 ------~~G~----------tH~~~~~a~lr~iPn~~V~~P~d~--~e~~~~l~~a~~~~~P~~i 203 (270)
..+. .|...+..+.+++ |++.+.-.++ +|++..++.+++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0111 1212345777777 8887765555 9999999999999999987
No 116
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=90.87 E-value=3.3 Score=33.69 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCC-------------
Q 024237 96 FTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG------------- 159 (270)
Q Consensus 96 ~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G------------- 159 (270)
.++.|.|+++.. .++++++.-- .|.+ .++.+.. +.+ .++|++++.- ++.....+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l~t-a~~--------~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~ 120 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQELAT-AVR--------YGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSG 120 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHHHH-HHH--------cCCCcEEEEEECCccHHHHHHHHHHcCCCccc
Confidence 446677777664 3455544422 2222 4555543 333 4778887654 33221100
Q ss_pred CC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 160 AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 160 ~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.. +...+.++.++. |+......+++|++.+++.+.+.++|++|.
T Consensus 121 ~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 121 TDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred ccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 112334677775 888888888999999999999889999884
No 117
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=90.84 E-value=2.1 Score=42.62 Aligned_cols=114 Identities=20% Similarity=0.113 Sum_probs=68.7
Q ss_pred CeeecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. ---|++++.+|.|.|+. |...++.+.+..=+..++--|.+. + ..++||++++...... +.+..
T Consensus 50 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~A--~-------~~~~Pvl~i~G~~~~~~~~~~~~ 119 (566)
T PRK07282 50 RHIL-ARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADA--M-------SDSVPLLVFTGQVARAGIGKDAF 119 (566)
T ss_pred eEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH--h-------hcCCCEEEEecccccccCCCCCc
Confidence 5543 46899999999999987 544444433333344455555432 2 1589999996542222 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
|.....++++.+=-... ...+++++..+++.|++. ++||||-.|..+
T Consensus 120 q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 120 QEADIVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred cccChhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 21222477777654433 445777777777776653 589999877654
No 118
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=90.82 E-value=4.3 Score=34.62 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=67.1
Q ss_pred hhCCCCeeeccc-ch-hHHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCC
Q 024237 80 KYGPERVLDTPI-TE-AGFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA 154 (270)
Q Consensus 80 ~~gp~R~id~GI-aE-~~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~ 154 (270)
+. |.+|+..+- .= -..+..|.|.++. .-+|++++.-- .|.+ ....|-. +.. .++|++++. .++.
T Consensus 41 ~~-~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m-~~~eL~T-a~~--------~~lpvi~vV~NN~~ 109 (196)
T cd02013 41 EK-PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGM-SMMEIMT-AVR--------HKLPVTAVVFRNRQ 109 (196)
T ss_pred CC-CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc-cHHHHHH-HHH--------hCCCeEEEEEECch
Confidence 44 788886532 11 2345677777665 34666655422 3333 3344433 433 478988875 3332
Q ss_pred CCC--------CC-----CCC-cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh---CCCCeEEe
Q 024237 155 AAG--------VG-----AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (270)
Q Consensus 155 ~~~--------~G-----~tH-~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~ir 204 (270)
++- .+ ..+ ...+..+.+++ |+.-+.-.+++|++.+++.+++ .++|++|-
T Consensus 110 yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 110 WGAEKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred hHHHHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 210 11 111 12234666666 7877888899999999999998 78999985
No 119
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.80 E-value=3.1 Score=41.54 Aligned_cols=115 Identities=19% Similarity=0.100 Sum_probs=71.8
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~ 163 (270)
||+- ---||..+.+|.|.|+.--+| +|-.....=...+.--|-+ + ++ -..|++.+...-.+...|....
T Consensus 41 ~~I~-~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~-A-~~-------d~~Pll~itGqv~~~~~g~~af 110 (550)
T COG0028 41 RHIL-VRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD-A-YM-------DSVPLLAITGQVPTSLIGTDAF 110 (550)
T ss_pred cEEE-eccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH-H-Hh-------cCCCEEEEeCCccccccCcchh
Confidence 4443 467999999999999986555 5444333333444444532 3 32 5789999864322222333222
Q ss_pred chH--HHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeeccccc
Q 024237 164 HCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (270)
Q Consensus 164 ~~~--~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~~ 210 (270)
|+. .++++.+ =-..+...+++|+-.+++.|++. +||++|-.|+...
T Consensus 111 Qe~D~~~l~~p~-tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 111 QEVDQVGLFRPI-TKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred hhcchhhHhhhh-heeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHh
Confidence 433 3788777 33456677888888888887652 5899998776544
No 120
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=90.68 E-value=4.8 Score=33.40 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCeeecccch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC-
Q 024237 83 PERVLDTPITE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG- 157 (270)
Q Consensus 83 p~R~id~GIaE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~- 157 (270)
|.+|+..+-.= -..+..|.|.++.- -++++++.-- .|.+- ...+- .+.+ .++|++++.- ++..+-
T Consensus 40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~-~~el~-ta~~--------~~~p~~~iV~nN~~~~~~ 109 (178)
T cd02002 40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYT-IQALW-TAAR--------YGLPVTVVILNNRGYGAL 109 (178)
T ss_pred CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhcc-HHHHH-HHHH--------hCCCeEEEEEcCccHHHH
Confidence 77888764311 11345666666653 4555555421 23222 23343 2333 4788888753 321110
Q ss_pred -------C----------CC---CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 -------V----------GA---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 -------~----------G~---tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. +. .+...+..+.++. |+.-+.-.+++|++..++.+.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 0112234566665 777777788999999999999988999873
No 121
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.21 E-value=3.1 Score=41.80 Aligned_cols=113 Identities=18% Similarity=0.079 Sum_probs=63.9
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
..-.|++++.+|-|.|+...+| +|...+..=+.-+.--|-+ + +. .++||+++...-... +.+..+...
T Consensus 47 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~-A-~~-------d~vPvl~I~G~~~~~~~~~~~~q~~d 117 (597)
T PRK08273 47 QARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYD-A-KL-------DHVPVVAIVGQQARAALGGHYQQEVD 117 (597)
T ss_pred EeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-Hh-------cCCCEEEEecCCchhhcCCCCCCccC
Confidence 4568999999999999984444 4433333334444555533 2 32 589999986432221 222222122
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHH----hHhCCCCeEEeeccccc
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLENELLY 210 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~----a~~~~~P~~ir~~~~~~ 210 (270)
..++++.+=--......+++++...++. +....+||||-.|..+.
T Consensus 118 ~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~ 166 (597)
T PRK08273 118 LQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ 166 (597)
T ss_pred HHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence 2377776531123344555655555544 44457899998876543
No 122
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.87 E-value=5.3 Score=39.74 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeeh-hhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~-~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- +=-..++.|.|.++.. -++++++.- ..|.+..-| |- .+.+ .++|++++. .++.++-
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L~-ta~~--------~~lpvi~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-MA-TAAE--------NQLDVKIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-HH-HHHH--------hCCCeEEEEEeCCcccc
Confidence 778987653 3334667777777663 355555442 134444333 43 3434 478887764 3432210
Q ss_pred -------------CCCC--CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 -------------VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 -------------~G~t--H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+.. +...+.++.+++ |+.-+...+.+|+...++.+++.++|++|-.
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 540 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIHV 540 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 112334677777 8888899999999999999999899999853
No 123
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=89.86 E-value=13 Score=32.75 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=29.1
Q ss_pred HHHccCCCcE---EEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 168 AWYASVPGLK---VLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 168 a~lr~iPn~~---V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.+++ |+. .+...+++|++.+++.+++.++|++|-
T Consensus 158 ~iA~a~-G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe 196 (235)
T cd03376 158 LIMAAH-NIPYVATASVAYPEDLYKKVKKALSIEGPAYIH 196 (235)
T ss_pred HHHHHc-CCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 555555 443 457899999999999999999999884
No 124
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.75 E-value=8.5 Score=38.28 Aligned_cols=114 Identities=20% Similarity=0.114 Sum_probs=70.4
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccE-EEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi-~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. ...|++++.+|.|.|+..-+|- +...+..=+..++--|.+ + +. .++||+++...-... +.+..
T Consensus 53 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~~-------~~~Pvl~i~G~~~~~~~~~~~~ 122 (564)
T PRK08155 53 RHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIAD-A-RL-------DSIPLVCITGQVPASMIGTDAF 122 (564)
T ss_pred eEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHH-H-Hh-------cCCCEEEEeccCCcccccCCCc
Confidence 6666 7899999999999999865664 332223334445566654 3 32 589999986432221 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~ 209 (270)
+.....++++.+--...- -.+++++...++.|++ . +|||||-.|..+
T Consensus 123 q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 123 QEVDTYGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred cccchhhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 212224788776544333 3477777777776664 2 589999877543
No 125
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.71 E-value=3.4 Score=41.19 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=68.1
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCC----
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG---- 159 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G---- 159 (270)
|++.+ --|++.+.+|-|.|+...+| ++...+..=+..+.--|-+ + + ..++||+++..+-.....+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~-A-~-------~d~~Pvl~I~G~~~~~~~~~~~~ 121 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHN-A-A-------RSRIPVLVFAGRSPYTEEGELGS 121 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHH-H-h-------hcCCCEEEEeccCCccccccccc
Confidence 45544 45999999999999985555 4333223334445555543 2 2 2589999986532111111
Q ss_pred ---CCC-cch--H-HHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 160 ---AQH-SHC--Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 160 ---~tH-~~~--~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
..| .|. | ..+++.+=. ......+++++...++.+++ .++||||-.|..+
T Consensus 122 ~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 122 RNTRIHWTQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred cccCcccchhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 112 133 3 378887643 34456677887777777664 2689999877544
No 126
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.50 E-value=3.9 Score=40.54 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCC-CCCcc
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-AQHSH 164 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G-~tH~~ 164 (270)
..--|++++.+|.|.|+.--+| +|.+.+..=..-+.--|-+ + + ..++||+++....... +.+ ..| |
T Consensus 45 ~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~~~-q 114 (554)
T TIGR03254 45 GFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-A-T-------TNCFPMIMISGSSERHIVDLQQGDY-E 114 (554)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH-H-H-------hcCCCEEEEEccCCccccccCCCCc-c
Confidence 4578999999999999984455 4433323233344555543 2 2 1589999986432211 111 123 3
Q ss_pred h--HHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccccC
Q 024237 165 C--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLYG 211 (270)
Q Consensus 165 ~--~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~~ 211 (270)
. ..++++.+=- ......+++++...++.|++ .+|||||-.|..+..
T Consensus 115 ~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~ 167 (554)
T TIGR03254 115 EMDQLAAAKPFAK-AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLG 167 (554)
T ss_pred hhhHHHHhhhhhe-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhh
Confidence 2 2488887744 45556677777766666553 268999987765543
No 127
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.85 E-value=4.4 Score=40.34 Aligned_cols=110 Identities=17% Similarity=0.023 Sum_probs=69.4
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCC-CCcch-
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QHSHC- 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~-tH~~~- 165 (270)
..-.|++.+.+|.|.|+..-+| ++...+..=+..++--|.+ + + ..++||++++........|. .+ |.
T Consensus 46 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~-q~~ 115 (563)
T PRK08527 46 LTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLAT-A-Y-------MDSIPLVLISGQVPNSLIGTDAF-QEI 115 (563)
T ss_pred EeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCCC-ccc
Confidence 4578999999999999874444 4433323334445566644 2 2 25899999865322222221 12 33
Q ss_pred H-HHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeecccc
Q 024237 166 Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (270)
Q Consensus 166 ~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~ 209 (270)
| .++++.+=- ......+++++..+++.|++. +|||||-.|..+
T Consensus 116 d~~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 116 DAVGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred chhhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 3 378887644 344568899998888887752 579999877543
No 128
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.78 E-value=5.1 Score=39.91 Aligned_cols=114 Identities=21% Similarity=0.090 Sum_probs=69.1
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++.+ -.|++.+.+|-|.|+...+| ++.+.+..=+..++--|.+ + + ..++||+++....... +.+..
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~-A-~-------~~~~Pvlvi~G~~~~~~~~~~~~ 113 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIAT-A-Y-------TDSVPLVILSGQVPSNLIGTDAF 113 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCcc
Confidence 55555 89999999999999984455 3333223334445555543 2 2 2589999986542222 22322
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
|......+++.+=- ......+++++...++.|++ ..|||||-.|..+
T Consensus 114 q~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 114 QECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred cccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 21122477877643 34455677777776766665 2689999877543
No 129
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.56 E-value=4.3 Score=40.85 Aligned_cols=115 Identities=17% Similarity=0.069 Sum_probs=70.7
Q ss_pred CeeecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
+++.+ -.|++++.+|.|.|+. |...++...+..=+..++--|.+ + + ..++||++++...... +.+..
T Consensus 71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~-------~~~~PllvI~G~~~~~~~~~~~~ 140 (612)
T PRK07789 71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIAD-A-N-------MDSVPVVAITGQVGRGLIGTDAF 140 (612)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCcC
Confidence 45544 7999999999999998 54434433333334445555543 3 3 2589999987542222 22232
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~~ 210 (270)
|.....++++.+--. .....+++++..+++.|++. .|||||-.+..+.
T Consensus 141 q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 193 (612)
T PRK07789 141 QEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDAL 193 (612)
T ss_pred cccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchh
Confidence 212224788877543 33456888888877777652 5899998776543
No 130
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=88.23 E-value=6.9 Score=38.69 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=68.7
Q ss_pred ecccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCC-CC-
Q 024237 88 DTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA-QH- 162 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~-tH- 162 (270)
=..--|++.+.+|.|.|+. | +.+|...+..-+..+.--|.+ |+ ..++||+++...-... ..+. .|
T Consensus 43 v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~~~~~ 112 (539)
T TIGR03393 43 VGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--SY-------AEHLPVIHIVGAPGTAAQQRGELLHH 112 (539)
T ss_pred eccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--Hh-------hccCCEEEEECCCCcchhhcCceeee
Confidence 3567899999999999998 6 566543333333344555543 23 2589999986432111 1110 01
Q ss_pred ------cchHHHHHccCCCcE-EEccCC-HHHHHHHHHHhHhCCCCeEEeecccccC
Q 024237 163 ------SHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG 211 (270)
Q Consensus 163 ------~~~~~a~lr~iPn~~-V~~P~d-~~e~~~~l~~a~~~~~P~~ir~~~~~~~ 211 (270)
.|....+++.+--.. +..|.+ +.++..+++.|+...+|+||-.|+.+..
T Consensus 113 ~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~ 169 (539)
T TIGR03393 113 TLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA 169 (539)
T ss_pred ecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 122234554432111 225666 7889999999998889999988766543
No 131
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=88.05 E-value=5 Score=40.03 Aligned_cols=115 Identities=22% Similarity=0.093 Sum_probs=69.5
Q ss_pred CeeecccchhHHHHHHHHHhhcCCccEEE-eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~Pi~~-~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++.+ .-|++++.+|.|.|+..-+|-++ .....-+..++--|-+ + +. .++||+++..+.... +.+..
T Consensus 51 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~-A-~~-------~~~Pvl~I~G~~~~~~~~~~~~ 120 (578)
T PRK06112 51 RQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE-A-LK-------ASVPIVALVQDVNRDQTDRNAF 120 (578)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH-H-hh-------cCCCEEEEecCCccccCCCCCc
Confidence 45544 48999999999999985555443 3233444455556644 2 32 589999986542221 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----C-CCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~-~~P~~ir~~~~~~ 210 (270)
|......+++.+-- ......+++++...++.|++ . .||+||-.|..++
T Consensus 121 Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~ 173 (578)
T PRK06112 121 QELDHIALFQSCTK-WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLL 173 (578)
T ss_pred cccChhhhhccccc-eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence 21122478888754 34455667777766666554 2 5899998776543
No 132
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.50 E-value=6.6 Score=39.09 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=68.2
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC--CC-CCCcc
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG-AQHSH 164 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~--~G-~tH~~ 164 (270)
.---|++++.+|.|.|+.--+| +|...+..-+.-+.--|.+ + + ..++||+++........ .+ .++ |
T Consensus 52 ~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~~~-q 121 (569)
T PRK09259 52 GFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN-A-T-------TNCFPMIMISGSSEREIVDLQQGDY-E 121 (569)
T ss_pred eeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-H-H-------hcCCCEEEEEccCCcccccccCCCc-c
Confidence 3468999999999999984444 4444333344445556644 2 2 15899999864322111 11 123 3
Q ss_pred h-H-HHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccccC
Q 024237 165 C-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLYG 211 (270)
Q Consensus 165 ~-~-~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~~~ 211 (270)
. + ..+++.+=- ..+...+++++...++.|++ .+|||||-.|+.+..
T Consensus 122 ~~d~~~~~~~~tk-~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 174 (569)
T PRK09259 122 ELDQLNAAKPFCK-AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLA 174 (569)
T ss_pred ccchhhhhhhhee-eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhh
Confidence 2 2 378887754 34445677877776666654 268999988765443
No 133
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.28 E-value=15 Score=36.40 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=66.7
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
...-|++++.+|-|.|+...+| +|...+..=+..++--|.+ + +. ..+||+++..+.... +.|..|...
T Consensus 52 ~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~-A-~~-------~~~Pvl~IsG~~~~~~~~~~~~q~~d 122 (568)
T PRK07449 52 THFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIE-A-GL-------TGVPLIVLTADRPPELRDCGANQAID 122 (568)
T ss_pred eecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHH-H-hh-------cCCcEEEEECCCCHHHhcCCCCceec
Confidence 3468999999999999885555 3433334444556666643 2 32 589999996542221 334434223
Q ss_pred HHHHHccCCCcEEEccCCH-----HHHHHHHHHhHh----CCCCeEEeeccc
Q 024237 166 YAAWYASVPGLKVLSPYSS-----EDARGLLKAAIR----DPDPVVFLENEL 208 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~-----~e~~~~l~~a~~----~~~P~~ir~~~~ 208 (270)
..++++.+-...+-.|.+. ..+..+++.+.. ..+||||-.|..
T Consensus 123 ~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 123 QLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred HhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 3588888775566666652 123445555332 478999977643
No 134
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=87.17 E-value=6.9 Score=33.51 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhc----C-CccEEEeehhhHH-H--HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchH
Q 024237 95 GFTGIGVGAAYY----G-LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY 166 (270)
Q Consensus 95 ~~vg~AaGlA~~----G-~~Pi~~~~~~~f~-~--ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~ 166 (270)
+-+++|.|+|+. | -.+++++. .+-. + ..++.+.. ++. .+.|++++..+...+-++++. ..
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~-A~~--------~~~~li~vvdnN~~~~~~~~~--~~ 146 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVI-GDGALTGGMAFEALNN-AGY--------LKSNMIVILNDNEMSISPNVG--TP 146 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEE-cccccccChHHHHHHH-HHH--------hCCCEEEEEECCCcccCCCCC--CH
Confidence 345667777765 2 23444443 4332 2 55677743 544 367888876653332233332 23
Q ss_pred HHHHccCCCcEEE---ccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 167 AAWYASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 167 ~a~lr~iPn~~V~---~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
...++.. |+.+. ...|.+++..+++.+.+.++|++|..
T Consensus 147 ~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~ 187 (195)
T cd02007 147 GNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV 187 (195)
T ss_pred HHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 4555553 55544 45577888888888877788999854
No 135
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=86.17 E-value=8 Score=32.34 Aligned_cols=96 Identities=25% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHhhcC-CccEEEeehhh--HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCCC-----------C-
Q 024237 98 GIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGA-----------Q- 161 (270)
Q Consensus 98 g~AaGlA~~G-~~Pi~~~~~~~--f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G~-----------t- 161 (270)
+.|.|+++.. -++++++. .+ |.+-.+..|.. +.+ .++|++++.- ++..+-.+. .
T Consensus 58 ~~AiGa~la~p~~~Vv~i~-GDG~f~~~g~~eL~t-a~~--------~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~ 127 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVI-GDSTFFHSGILGLIN-AVY--------NKANITVVILDNRTTAMTGGQPHPGTGKTLTEP 127 (178)
T ss_pred HHHhhHHhhCCCCCEEEEe-cChHHhhccHHHHHH-HHH--------cCCCEEEEEECCcceeccCCCCCCCCcccccCC
Confidence 4666666653 46666654 43 32222455543 433 5788877643 322110110 1
Q ss_pred Cc-chHHHHHccCCCcEEEccCCHHHHH---HHHHHhHhCCCCeEEe
Q 024237 162 HS-HCYAAWYASVPGLKVLSPYSSEDAR---GLLKAAIRDPDPVVFL 204 (270)
Q Consensus 162 H~-~~~~a~lr~iPn~~V~~P~d~~e~~---~~l~~a~~~~~P~~ir 204 (270)
+. ..+..+.++. |++-+...+++|++ ..++.+++.++|.+|.
T Consensus 128 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 128 TTVIDIEALVRAI-GVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred CCccCHHHHHHHC-CCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 1234555555 55555555555554 8889998889999884
No 136
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.09 E-value=7.5 Score=38.93 Aligned_cols=114 Identities=16% Similarity=0.013 Sum_probs=67.9
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC--CCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~--~G~t 161 (270)
|++. ..-|++++.+|.|.|+.--+| ++.+.+..=+.-++--|.+ + + ..++||+++........ .+..
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~ 122 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT-A-Q-------MDSVPLLVITGQVGRAFIGTDAF 122 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH-H-h-------hcCCCEEEEecCCCccccCCCCc
Confidence 4554 569999999999999984445 4333223333344555543 2 3 25899999865422222 2222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
|.....++++.+=- -.....+++++..+++.|++ .+|||||-.|..+
T Consensus 123 q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 123 QEVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred cccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 21122366665522 34455677888887777764 2589999877554
No 137
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=85.62 E-value=8.1 Score=38.66 Aligned_cols=115 Identities=15% Similarity=0.015 Sum_probs=68.3
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++. ...|++++.+|-|.|+.--+| ++.+.+..=+.-++--|.+ + + ..++||+++...-... +.+..
T Consensus 40 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~-A-~-------~~~~Pvl~I~G~~~~~~~~~~~~ 109 (586)
T PRK06276 40 IHIL-TRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIAT-A-Y-------ADSSPVIALTGQVPTKLIGNDAF 109 (586)
T ss_pred cEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH-H-H-------hcCCCEEEEeCCCCccccCCCCC
Confidence 4444 359999999999999984455 3332222333445555644 2 2 1589999986432221 22222
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-----CCCeEEeeccccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-----~~P~~ir~~~~~~ 210 (270)
+.....++++.+=-... .-.+++++...++.|++. ++||||-.|..+.
T Consensus 110 q~~d~~~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 110 QEIDALGIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred ccccHhhHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHH
Confidence 21122478887654333 345677777777776653 5899998776543
No 138
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=85.56 E-value=16 Score=31.15 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=28.4
Q ss_pred HHHccCCCcEE---EccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 168 AWYASVPGLKV---LSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 168 a~lr~iPn~~V---~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.+++ |..- ....+++|++..++.+++.++|++|-
T Consensus 142 ~iA~a~-G~~~~~~~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 142 ALALAA-GATFVARGFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred HHHHHC-CCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 555555 3333 46899999999999999999999984
No 139
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.39 E-value=21 Score=29.98 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHH
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~ 120 (270)
+.+-+.|.+.+. +.+++ .|.+.... .. -.+ ... |.+|+..|.-= ..++.|.|+++...++++++. .+-.
T Consensus 2 ~~~~~~l~~~~~---~~~vv-~d~G~~~~--~~-~~~-~~~-~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~-GDG~ 70 (179)
T cd03372 2 RDAIKTLIADLK---DELVV-SNIGFPSK--EL-YAA-GDR-PLNFYMLGSMG-LASSIGLGLALAQPRKVIVID-GDGS 70 (179)
T ss_pred HHHHHHHHHhCC---CCeEE-eCCCHhHH--HH-HHc-cCc-ccccccccchh-hHHHHHHHHHhcCCCcEEEEE-CCcH
Confidence 456666776665 33333 34443211 11 111 123 66777533322 233577777766446777665 3322
Q ss_pred H-HHHHHHHHHHhhccccCCCCCC-CCEEEE-ecCCCCCCCCC-----CCcchHHHHHccCCCcEEEccC-CHHHHHHHH
Q 024237 121 M-QAIDHIINSAAKSNYMSSGQIS-VPIVFR-GPNGAAAGVGA-----QHSHCYAAWYASVPGLKVLSPY-SSEDARGLL 191 (270)
Q Consensus 121 ~-ra~dqi~~~~a~~~~~sg~~~~-~pvi~~-~~~G~~~~~G~-----tH~~~~~a~lr~iPn~~V~~P~-d~~e~~~~l 191 (270)
. -....+ ..+++ .+ .|++++ ..++..+-.+. .+...+..+.++. |+.-+... +++|++.++
T Consensus 71 f~m~~~el-~ta~~--------~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al 140 (179)
T cd03372 71 LLMNLGAL-ATIAA--------EKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAV 140 (179)
T ss_pred HHhCHHHH-HHHHH--------cCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHH
Confidence 2 122233 23333 24 345554 44433221121 1212334666665 66666666 999999999
Q ss_pred HHhHhCCCCeEEee
Q 024237 192 KAAIRDPDPVVFLE 205 (270)
Q Consensus 192 ~~a~~~~~P~~ir~ 205 (270)
+++. ++|.+|-.
T Consensus 141 ~~a~--~gp~lIev 152 (179)
T cd03372 141 EQAL--DGPSFIHV 152 (179)
T ss_pred HHhc--CCCEEEEE
Confidence 9998 78998843
No 140
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.18 E-value=30 Score=31.58 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcC-CccEEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~ 113 (270)
..-+...++.++|.++--...+.++++ |++.+. ....+ +-+..+.-. =...+..|.|+++.. -+|++.
T Consensus 15 g~~~i~~~~~~a~~~l~~~p~d~ivvs-diG~~~----~~~~~---~~~~~~~~~---mG~alp~AiGaklA~pd~~VVa 83 (280)
T PRK11869 15 GNFGIRNALMKALSELNLKPRQVVIVS-GIGQAA----KMPHY---INVNGFHTL---HGRAIPAATAVKATNPELTVIA 83 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCEEEEe-CchHhh----hHHHH---ccCCCCCcc---cccHHHHHHHHHHHCCCCcEEE
Confidence 345577788888877644445555554 554221 11111 101111111 123456677777765 467766
Q ss_pred eehhhHH--HHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCC---CCC-------C---------CCCCc-chHHHHH
Q 024237 114 FMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA---AAG-------V---------GAQHS-HCYAAWY 170 (270)
Q Consensus 114 ~~~~~f~--~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~---~~~-------~---------G~tH~-~~~~a~l 170 (270)
+. .+-. .-.+..|-+ +++ .++|++++.- ++. +.+ . |.... ..+..+.
T Consensus 84 i~-GDG~~~~iG~~eL~t-A~r--------~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA 153 (280)
T PRK11869 84 EG-GDGDMYAEGGNHLIH-AIR--------RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALA 153 (280)
T ss_pred EE-CchHHhhCcHHHHHH-HHH--------hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHH
Confidence 54 4333 333566755 444 4788887643 211 111 0 00000 1122444
Q ss_pred ccCCCcEEEc---cCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 171 ASVPGLKVLS---PYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 171 r~iPn~~V~~---P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+. |..-+. +.+++|++.+++.+++.++|++|-.
T Consensus 154 ~a~-G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV 190 (280)
T PRK11869 154 IAL-DASFVARTFSGDIEETKEILKEAIKHKGLAIVDI 190 (280)
T ss_pred HHC-CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 443 555555 9999999999999999999999953
No 141
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=84.83 E-value=36 Score=32.19 Aligned_cols=111 Identities=20% Similarity=0.140 Sum_probs=64.1
Q ss_pred CCCeeecccchhHHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCC-CCEEEEe-cCCCCCCC
Q 024237 83 PERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQIS-VPIVFRG-PNGAAAGV 158 (270)
Q Consensus 83 p~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~-~pvi~~~-~~G~~~~~ 158 (270)
|.+|+.+|--= +..++|.|+|+. .-++++++.-- .|++. ...+ ..++. .+ .|++++. .++.....
T Consensus 214 ~~~f~~~GsMG-~a~p~AlG~ala~p~r~Vv~i~GDGsflm~-~~eL-~t~~~--------~~~~nli~VVlNNg~~~~~ 282 (361)
T TIGR03297 214 ARDFLTVGSMG-HASQIALGLALARPDQRVVCLDGDGAALMH-MGGL-ATIGT--------QGPANLIHVLFNNGAHDSV 282 (361)
T ss_pred CCceEeechhh-hHHHHHHHHHHHCCCCCEEEEEChHHHHHH-HHHH-HHHHH--------hCCCCeEEEEEcCcccccc
Confidence 56777653322 334678888776 34666665422 22222 2223 23333 24 3666553 34432222
Q ss_pred C--CCCc--chHHHHHccCCCc-EEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 159 G--AQHS--HCYAAWYASVPGL-KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 159 G--~tH~--~~~~a~lr~iPn~-~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
| .+++ ..+..+.++. |. ..+...+++|+..+++.+.+.++|++|..
T Consensus 283 g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV 333 (361)
T TIGR03297 283 GGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIEV 333 (361)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 2221 2334677776 54 57788999999999999998899999853
No 142
>PRK06154 hypothetical protein; Provisional
Probab=84.60 E-value=13 Score=36.99 Aligned_cols=150 Identities=19% Similarity=0.103 Sum_probs=82.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-C-CccEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV 112 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G-~~Pi~ 112 (270)
+.++..+++.+.|.++ +-+.|+.-+ . . .+.+.+.+ - .=|++. .--|++.+.+|.|.|+. | .+|=+
T Consensus 18 ~~~~~a~~l~~~L~~~---GV~~vFGip--~----~-~l~dal~~-~-~i~~i~-~rhE~~A~~mAdgyar~t~g~~~gv 84 (565)
T PRK06154 18 KTMKVAEAVAEILKEE---GVELLFGFP--V----N-ELFDAAAA-A-GIRPVI-ARTERVAVHMADGYARATSGERVGV 84 (565)
T ss_pred CcccHHHHHHHHHHHc---CCCEEEeCc--C----H-HHHHHHHh-c-CCeEEe-eCcHHHHHHHHHHHHHhcCCCCCEE
Confidence 3455566666665542 233333322 1 1 22344532 2 124554 67899999999999996 3 46644
Q ss_pred E--eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHH
Q 024237 113 E--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (270)
Q Consensus 113 ~--~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~ 188 (270)
+ +..+- +..+.--|.+ + + ..++||+++....... ..+..+.+ ..+++.+=- ......+++++.
T Consensus 85 ~~~t~GPG-~~N~~~gla~-A-~-------~~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk-~~~~v~~~~~~~ 151 (565)
T PRK06154 85 FAVQYGPG-AENAFGGVAQ-A-Y-------GDSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITK-WCEQVTLPDEVP 151 (565)
T ss_pred EEECCCcc-HHHHHHHHHH-H-h-------hcCCCEEEEeCCCCcccccCCCCcch--hhhHhhcce-eEEECCCHHHHH
Confidence 3 23333 3334555543 2 2 2589999986432111 12222211 366776643 445667777777
Q ss_pred HHHHHhHh-----CCCCeEEeeccccc
Q 024237 189 GLLKAAIR-----DPDPVVFLENELLY 210 (270)
Q Consensus 189 ~~l~~a~~-----~~~P~~ir~~~~~~ 210 (270)
..++.|++ ..+||||-.|..+.
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv~ 178 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVDVL 178 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchHHh
Confidence 76666654 36899998776543
No 143
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=84.03 E-value=33 Score=31.19 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCee-ecccchhHHHHHHHHHhhc-CCccEEEeehhh
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~i-d~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~ 118 (270)
..+-++|.++....+++++++ |++-+. .+..-+-+++++ -.| ..+..|.|+++. .-++++++. .+
T Consensus 29 ~~v~~al~e~~~~~~d~ivvs-diGc~~-------~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~-GD 95 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVVS-GIGCSG-------RFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVS-GD 95 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEEe-CcCHHH-------HhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEE-Cc
Confidence 345577776643345665554 665321 111112134443 233 566777787776 345666554 43
Q ss_pred --HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCC----------CC-C----Cc---c--hHHHHHccCCC
Q 024237 119 --FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGV----------GA-Q----HS---H--CYAAWYASVPG 175 (270)
Q Consensus 119 --f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~----------G~-t----H~---~--~~~a~lr~iPn 175 (270)
|.+-. ++-...+++ .++|++++.- ++.++-. |. + +. . .+..+.++. |
T Consensus 96 G~f~~~g-~~el~ta~r--------~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G 165 (277)
T PRK09628 96 GDGLAIG-GNHTIHGCR--------RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-G 165 (277)
T ss_pred hHHHHhh-HHHHHHHHH--------hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-C
Confidence 32222 222223444 5888888753 3221110 10 0 10 0 112444443 5
Q ss_pred cEE---EccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 176 LKV---LSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 176 ~~V---~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..- ....+++|++.+++.+++.++|++|-
T Consensus 166 ~~~va~~~v~~~~el~~al~~Al~~~Gp~lIe 197 (277)
T PRK09628 166 ASFVARESVIDPQKLEKLLVKGFSHKGFSFFD 197 (277)
T ss_pred CceEEEEccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 543 57899999999999999999999985
No 144
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=83.76 E-value=15 Score=36.42 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-
Q 024237 42 ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF- 117 (270)
Q Consensus 42 a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~- 117 (270)
.+.+.|.+.+.+| .+++ .|.+... .+. ..-+.-.. |.+|++.+- . --..++.|.|.++.. -++++++.--
T Consensus 367 ~~~~~l~~~l~~~--~iv~-~d~g~~~-~~~-~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG 440 (558)
T TIGR00118 367 QVIEELSRVTKDE--AIVT-TDVGQHQ-MWA-AQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDG 440 (558)
T ss_pred HHHHHHHhhCCCC--eEEE-eCCcHHH-HHH-HHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcch
Confidence 3566666666543 3333 3433211 111 12233344 788887653 2 333567777777763 3555544321
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC---------CC---CCC--cch-HHHHHccCCCcEEEcc
Q 024237 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG---------VG---AQH--SHC-YAAWYASVPGLKVLSP 181 (270)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~---------~G---~tH--~~~-~~a~lr~iPn~~V~~P 181 (270)
.|.+.. ..|- .+.+ .++|++++.- ++.++. .+ .++ ... +..+.+++ |+.-+.-
T Consensus 441 ~f~~~~-~eL~-ta~~--------~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v 509 (558)
T TIGR00118 441 SFQMNL-QELS-TAVQ--------YDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRI 509 (558)
T ss_pred HHhccH-HHHH-HHHH--------hCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEE
Confidence 344332 2332 3444 4788877643 332210 01 111 122 34666666 7888888
Q ss_pred CCHHHHHHHHHHhHhCCCCeEEe
Q 024237 182 YSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 182 ~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+++|++.+++.+++.++|++|-
T Consensus 510 ~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 510 EKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Confidence 89999999999999999999984
No 145
>PRK06163 hypothetical protein; Provisional
Probab=83.66 E-value=22 Score=30.68 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCeeecccchhHHHHHHHHHhhcC-CccEEEeehhh--HHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-C
Q 024237 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-G 157 (270)
Q Consensus 83 p~R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~~~~~~--f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~-~ 157 (270)
|.+|+..| +=-..+..|.|.++.. -++++++. .+ |.+- ...| ..++.. .++|++++. .++..+ .
T Consensus 50 ~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~-GDG~f~m~-~~eL-~Ta~~~-------~~lpi~ivV~NN~~yg~~ 118 (202)
T PRK06163 50 PQNFYMLG-SMGLAFPIALGVALAQPKRRVIALE-GDGSLLMQ-LGAL-GTIAAL-------APKNLTIIVMDNGVYQIT 118 (202)
T ss_pred CCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEE-cchHHHHH-HHHH-HHHHHh-------cCCCeEEEEEcCCchhhc
Confidence 67777433 1122334666766653 46666665 43 3322 2333 223321 256777664 333221 1
Q ss_pred CC----CCCcchHHHHHccCCCcE-EEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 VG----AQHSHCYAAWYASVPGLK-VLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 ~G----~tH~~~~~a~lr~iPn~~-V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+ ..+...+.++.+++ |+. -+.-.+.+|+..+++.+++.++|++|-.
T Consensus 119 ~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV 170 (202)
T PRK06163 119 GGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSGPGPSFIAV 170 (202)
T ss_pred CCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 11212234666666 775 5667899999999999999899999843
No 146
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=83.15 E-value=18 Score=35.84 Aligned_cols=147 Identities=20% Similarity=0.315 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhcCCccEEEeehh-hH
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTF-NF 119 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~G~~Pi~~~~~~-~f 119 (270)
+-+.|.+.+.++++++++. |.+... .....+..-..|.+|++.+. +=...+..|.|.++.--+|++.+.-- .|
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~~~---~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGANTL---DLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCchHH---HHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence 4456676665545666555 322111 11112222223778887653 22234466666666645677766422 33
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCC-CC-----CCC-----C--CcchHHHHHccCCCcEEEccCCHH
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AG-----VGA-----Q--HSHCYAAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~-~~-----~G~-----t--H~~~~~a~lr~iPn~~V~~P~d~~ 185 (270)
.+-. ..|- .+++ .++|++++. .++.. .. .|. . +...+.++.+++ |..-+.-.+++
T Consensus 447 ~m~~-~EL~-Ta~r--------~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 447 GFSG-MEVE-TICR--------YNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred cccH-HHHH-HHHH--------cCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 3333 3343 3444 478887764 34321 11 111 1 111234666666 77777779999
Q ss_pred HHHHHHHHhHhCCCCeEEe
Q 024237 186 DARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 186 e~~~~l~~a~~~~~P~~ir 204 (270)
|++..++.+++.++|++|-
T Consensus 516 el~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 516 ELKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 9999999999889999984
No 147
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=82.71 E-value=13 Score=32.98 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=59.8
Q ss_pred HHHHHHHHhhc------CCccEEEeehh-hHHH-HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---
Q 024237 96 FTGIGVGAAYY------GLKPVVEFMTF-NFSM-QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS--- 163 (270)
Q Consensus 96 ~vg~AaGlA~~------G~~Pi~~~~~~-~f~~-ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~--- 163 (270)
-++.|.|+|+. ..++|+ +.-- .|.. ..++.+.. ++. .++| ++++..+...+-.+.++.
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~-i~GDG~~~~G~~~eal~~-a~~--------~~l~~li~vvdnN~~~~~~~~~~~~~ 179 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYV-LLGDGELQEGSVWEAASF-AGH--------YKLDNLIAIVDSNRIQIDGPTDDILF 179 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE-EECcccccccHHHHHHHH-HHH--------cCCCcEEEEEECCCccccCcHhhccC
Confidence 44677777765 334443 4322 2221 35777754 444 4675 555554433222333321
Q ss_pred c-hHHHHHccCCCcEEEccC--CHHHHHHHHHHhHhC-CCCeEEeec
Q 024237 164 H-CYAAWYASVPGLKVLSPY--SSEDARGLLKAAIRD-PDPVVFLEN 206 (270)
Q Consensus 164 ~-~~~a~lr~iPn~~V~~P~--d~~e~~~~l~~a~~~-~~P~~ir~~ 206 (270)
. .+..+++++ |+.++.-. |.+++...++.+.+. ++|++|...
T Consensus 180 ~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 180 TEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred chhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 224778887 88888777 899999999999876 789998643
No 148
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=82.04 E-value=17 Score=36.42 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|++.+- +=-..++.|.|.++.. -++++++.-- .|.+.. ..| ..+.+ .++|++++.- ++..+
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL-~Ta~~--------~~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNS-QEL-ATIAE--------YDIPVVICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccH-HHH-HHHHH--------hCCCeEEEEEeCCchHH
Confidence 788987642 3344667778877763 3555554322 233322 223 23434 4788877643 33211
Q ss_pred ---------C---CCCCCc-c-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ---------G---VGAQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ---------~---~G~tH~-~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+ .+..+. . .+.++..++ |.+-+.-.+++|++.+++.+++.++|.+|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 111111 1 234677776 788888899999999999999989999984
No 149
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=81.93 E-value=12 Score=31.94 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc-chh-HHHHHHHHHhhc-CCccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI-TEA-GFTGIGVGAAYY-GLKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI-aE~-~~vg~AaGlA~~-G~~Pi~~~~~~-~ 118 (270)
+-+.|.+.+..| .+++ .|.+... .+ ....+.-.. |.+|++.+- .=. ..++.|.|.++. .-+|++++.-- .
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~-~~-~~~~~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~ 86 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQ-IA-GAQMLHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYD 86 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHH-HH-HHHhcCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChH
Confidence 445556555544 3333 4544211 11 112233344 778887652 212 245577777665 35677766422 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC--------CC-----CCC-----------cchHHHHHccC
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG--------VG-----AQH-----------SHCYAAWYASV 173 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~--------~G-----~tH-----------~~~~~a~lr~i 173 (270)
|.+. ...|- .+.+ .++|++++.- ++..+- .+ ..+ ...+..+-+++
T Consensus 87 f~m~-~~eL~-Ta~~--------~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~ 156 (202)
T cd02006 87 FQFM-IEELA-VGAQ--------HRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL 156 (202)
T ss_pred hhcc-HHHHH-HHHH--------hCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC
Confidence 3333 23332 2433 4788888643 332110 00 001 01223455555
Q ss_pred CCcEEEccCCHHHHHHHHHHhHh----CCCCeEEe
Q 024237 174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (270)
Q Consensus 174 Pn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir 204 (270)
|+.-+.-.+++|++.+++.+++ .++|++|-
T Consensus 157 -G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie 190 (202)
T cd02006 157 -GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE 190 (202)
T ss_pred -CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 7788888999999999999985 68899884
No 150
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=81.41 E-value=24 Score=33.37 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=68.7
Q ss_pred ecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCC-cch
Q 024237 88 DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQH-SHC 165 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH-~~~ 165 (270)
---=+|.+.++++.|.++.|-+.+..+-.+ =+....+.+-. ++. ..+|+++.... +.....-+++ .|.
T Consensus 51 vq~EsE~~a~s~v~GA~~aGar~~TaTSg~-Gl~Lm~E~l~~-a~~--------~~~P~Vi~~~~R~~ps~g~p~~~dq~ 120 (365)
T COG0674 51 VQMESEIGAISAVIGASYAGARAFTATSGQ-GLLLMAEALGL-AAG--------TETPLVIVVAQRPLPSTGLPIKGDQS 120 (365)
T ss_pred EEeccHHHHHHHHHHHHhhCcceEeecCCc-cHHHHHHHHHH-HHh--------ccCCeEEEEeccCcCCCcccccccHH
Confidence 334579999999999999999999988544 45556677754 333 57999997542 2211111244 255
Q ss_pred HHHHHccCCCcEEEccCCHHHHHHHHHH----hHhCCCCeEEe
Q 024237 166 YAAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFL 204 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~P~d~~e~~~~l~~----a~~~~~P~~ir 204 (270)
|.-..|.- +..++.=+|.+|+...-.. |.+..-|+++.
T Consensus 121 D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~ 162 (365)
T COG0674 121 DLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVL 162 (365)
T ss_pred HHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEe
Confidence 55444443 7777777788887764444 44446688776
No 151
>PRK08266 hypothetical protein; Provisional
Probab=81.23 E-value=22 Score=35.05 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=66.7
Q ss_pred CCCeeecccc--hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPIT--EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GIa--E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+..+.. =...++.|.|.++.. -+|++++.-- .|.+. ...|- .+.+ .++|++++. .++.++
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~-~~eL~-ta~~--------~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFG-VQELA-TAVQ--------HNIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhcc-HHHHH-HHHH--------hCCCeEEEEEeCCcchH
Confidence 7788877531 122346777777764 3565555422 23333 34443 3433 478888864 333221
Q ss_pred --------CCC----CC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 --------GVG----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 --------~~G----~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+ .. |...+..+.+++ |+..+.-.+.+|++..++++++.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 011 11 211234667776 888888899999999999999888999884
No 152
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=80.98 E-value=29 Score=34.35 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=65.0
Q ss_pred CCCeeeccc-chh-HHHHHHHHHhhcC--CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC
Q 024237 83 PERVLDTPI-TEA-GFTGIGVGAAYYG--LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (270)
Q Consensus 83 p~R~id~GI-aE~-~~vg~AaGlA~~G--~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~ 156 (270)
|.+|+..+- .=. ..+..|.|.++.. -+|++++.-- .|.+. ...| ..+.+ .++|++++.- ++..+
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~-~~eL-~Ta~~--------~~lpi~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMT-MMEL-ITAKK--------YDLPVKIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhh-HHHH-HHHHH--------HCCCeEEEEEECCccc
Confidence 667776431 111 1345566766653 4777766422 23333 2334 23433 4788877643 33221
Q ss_pred -------CCCCCC------cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -------GVGAQH------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -------~~G~tH------~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..|..+ ...+.++.+++ |+.-....+++|++..++++++.++|++|-
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 011111 11234666666 888888999999999999999989999984
No 153
>PRK08617 acetolactate synthase; Reviewed
Probab=80.20 E-value=27 Score=34.53 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=65.6
Q ss_pred hCCCCeeecccchhHHHH----HHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC
Q 024237 81 YGPERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG 153 (270)
Q Consensus 81 ~gp~R~id~GIaE~~~vg----~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G 153 (270)
+.|.+++..+- ...+| .|.|.++.. -++++++.-- .|.+.. ..| ..+.+ .++|++++. .++
T Consensus 402 ~~p~~~~~~~~--~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~-~eL-~Ta~~--------~~lpv~~vV~NN~ 469 (552)
T PRK08617 402 YEPRHLLFSNG--MQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSA-MEL-ETAVR--------LKLNIVHIIWNDG 469 (552)
T ss_pred cCCCeEEecCc--cccccccccHHHhhHhhcCCCcEEEEEechHHhhhH-HHH-HHHHH--------hCCCeEEEEEECC
Confidence 33777765431 22444 677777653 4565555422 333332 333 23443 488888653 343
Q ss_pred CCCC--------C----CCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 154 AAAG--------V----GAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 154 ~~~~--------~----G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+- . |.. +...+.++.+++ |+.-+...+++|++.+++.+++.++|++|-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 2211 0 111 112234666666 888889999999999999999989999984
No 154
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=80.03 E-value=14 Score=37.05 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcC------CccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCC----
Q 024237 96 FTGIGVGAAYYG------LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH---- 162 (270)
Q Consensus 96 ~vg~AaGlA~~G------~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH---- 162 (270)
-+++|.|+|+.- .++++++. .+=-. ..++.+.. ++. .+.|++++..+...+-++++.
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~-GDG~l~eG~~~Eal~~-A~~--------~~~nli~IvdnN~~~i~~~~~~~~~ 191 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVI-GDGALTGGMAFEALNN-AGD--------LKSDLIVILNDNEMSISPNVGALSN 191 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEE-cccccccCHHHHHHHH-HHh--------hCCCEEEEEECCCCcCCCcchhhhh
Confidence 456777777642 34566554 43222 56677754 444 358888776653332233321
Q ss_pred --cc-hHHHHHccCCCcEEEcc---CCHHHHHHHHHHhHhCCCCeEEeec
Q 024237 163 --SH-CYAAWYASVPGLKVLSP---YSSEDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 163 --~~-~~~a~lr~iPn~~V~~P---~d~~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
.. .....+++. |+.++.+ .|.+++..+++.+.+.++|++|...
T Consensus 192 ~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~ 240 (580)
T PRK05444 192 YLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVV 240 (580)
T ss_pred hhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11 112566666 7777654 7888888888888877899998643
No 155
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=80.01 E-value=16 Score=35.11 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=63.6
Q ss_pred cccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~ 165 (270)
...-|+++.-+|-|.|+.--+| +|...+..=...++--|-+ + + ..++||+++...-.. .+.|..+...
T Consensus 43 ~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~-A-~-------~~~~Pvl~i~g~~~~~~~~~~~~q~~d 113 (432)
T TIGR00173 43 VHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE-A-S-------YSGVPLIVLTADRPPELRGCGANQTID 113 (432)
T ss_pred EecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH-h-c-------ccCCcEEEEeCCCCHHHhCCCCCcccc
Confidence 4678999999999999984445 4433323333344444433 2 2 258999998653221 1223322122
Q ss_pred HHHHHccCCCcEEE--ccCC-------HHHHHHHHHHhHh-CCCCeEEeeccc
Q 024237 166 YAAWYASVPGLKVL--SPYS-------SEDARGLLKAAIR-DPDPVVFLENEL 208 (270)
Q Consensus 166 ~~a~lr~iPn~~V~--~P~d-------~~e~~~~l~~a~~-~~~P~~ir~~~~ 208 (270)
...+++.+=-...- .|.+ +..+..+++.+.. .+|||||-.|..
T Consensus 114 ~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 114 QPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred hhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 24777766544333 3443 2345556666665 368999987754
No 156
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=79.77 E-value=32 Score=34.16 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- +=-..++.|.|.++.- -+|++++.-- .|.+-. ..| ..+.. .++|++++. .+|.+.-
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNS-QEL-ATAVQ--------NDIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccH-HHH-HHHHH--------cCCCeEEEEEECCccHH
Confidence 678887542 3334667777777763 4666655422 233332 333 23333 478777764 3432210
Q ss_pred -------------CCCC--CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 -------------VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 -------------~G~t--H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.. +...+.++-+++ |.+-+.-.+.+|++.+|+.++..++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0110 112234666666 788888999999999999999999999984
No 157
>PLN02573 pyruvate decarboxylase
Probab=79.50 E-value=19 Score=36.02 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=62.9
Q ss_pred ccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCC-CCCcc-
Q 024237 90 PITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG-AQHSH- 164 (270)
Q Consensus 90 GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G-~tH~~- 164 (270)
.--|++.+.+|-|.|+. | ..+|...+..=..-+.--|-+. + ...+||+++...-... +.+ ..|+.
T Consensus 60 ~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla~A--~-------~d~~Pvl~I~G~~~~~~~~~~~~~~~~~ 129 (578)
T PLN02573 60 CCNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAIAGA--Y-------SENLPVICIVGGPNSNDYGTNRILHHTI 129 (578)
T ss_pred eCCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHHHH--H-------HhCCCEEEEECCCChhhhhcCceeeeec
Confidence 56799999999999987 7 6665544333333344455432 2 1589999986432221 222 22321
Q ss_pred ---h--H-HHHHccCCCcEEEccCCHHHHHH----HHHHhHhCCCCeEEeeccccc
Q 024237 165 ---C--Y-AAWYASVPGLKVLSPYSSEDARG----LLKAAIRDPDPVVFLENELLY 210 (270)
Q Consensus 165 ---~--~-~a~lr~iPn~~V~~P~d~~e~~~----~l~~a~~~~~P~~ir~~~~~~ 210 (270)
. . ..+++.+-- ......+++++.. +++.+....+||||-.|..+.
T Consensus 130 ~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv~ 184 (578)
T PLN02573 130 GLPDFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALKESKPVYISVSCNLA 184 (578)
T ss_pred CCCChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhhh
Confidence 1 1 256666532 2333455555554 455555557899998876543
No 158
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.89 E-value=24 Score=35.02 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCCeeeccc-ch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI-aE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- .- ...++.|.|.++.. -++++++.-- .|++-. ..| ..+.. .++|++++. .++..+-
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~~--------~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNI-QEL-MTAVE--------YKIPVINIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccH-HHH-HHHHH--------hCCCeEEEEEECCcchh
Confidence 778886542 22 23556777777764 4565555322 344433 234 33444 478888764 3332110
Q ss_pred -------------CCCCCc-c-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 -------------VGAQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 -------------~G~tH~-~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+..+. . .+..+.+++ |..-+.-.+++|++.+|+.++..++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 011121 1 224667776 778888899999999999999989999984
No 159
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=78.47 E-value=24 Score=35.26 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCeeecccchhHH----HHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC
Q 024237 83 PERVLDTPITEAGF----TGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA 155 (270)
Q Consensus 83 p~R~id~GIaE~~~----vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~ 155 (270)
|.+|+..+- .+. +..|.|.++.- -++++++.-- .|.+ ....+ ..+++ .++|++++.- ++..
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~-~~~el-~Ta~~--------~~lpv~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSM-LLGEL-LTVKL--------YDLPVKVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhh-hHHHH-HHHHH--------hCCCeEEEEEECCcc
Confidence 567775432 223 34666766652 3555554322 3443 33344 34554 4788888753 3322
Q ss_pred CC-------CC-CCC-----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 156 AG-------VG-AQH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 156 ~~-------~G-~tH-----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
+- .| ..+ ...+..+-+++ |..-+.-.+++|++.+++++++.++|++|-.
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIev 527 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVDV 527 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 11 111 11223566665 6767777899999999999999999999843
No 160
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.39 E-value=27 Score=35.17 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=63.3
Q ss_pred CeeecccchhHHHHHHHHHhhc----CC-ccEEEeehh-hHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYY----GL-KPVVEFMTF-NFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG 157 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~----G~-~Pi~~~~~~-~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~ 157 (270)
.++..|+.= +-+++|.|+|+. |. ..+++.+-- .+.. .++|.+.+ ++. .+.|++++..+...+.
T Consensus 108 ~~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~-A~~--------~k~~li~Ii~dN~~si 177 (581)
T PRK12315 108 DFFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNN-AAE--------LKSNLIIIVNDNQMSI 177 (581)
T ss_pred CCcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHH-HHh--------hCCCEEEEEECCCCcC
Confidence 345777754 467888888775 32 233333321 2223 67888854 665 3689999876532221
Q ss_pred CCCC----Ccc---------hHHHHHccCCCcEEEccCC---HHHHHHHHHHhHhCCCCeEEeec
Q 024237 158 VGAQ----HSH---------CYAAWYASVPGLKVLSPYS---SEDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 158 ~G~t----H~~---------~~~a~lr~iPn~~V~~P~d---~~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
.+++ +.. .....+.++ |+..+.|.| ..++..+++.+.+.++|++|...
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~ 241 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIH 241 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2111 111 123567776 776666644 45555566666566789999653
No 161
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=77.98 E-value=11 Score=41.07 Aligned_cols=163 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred cCCccccc--cchHHHHHHHHHHHHhhcC--CcE---EEEecCCCCCCCcc--ccchhhHhhhCC-----CCeeecccch
Q 024237 28 RNYSSAVK--QMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGAY--KISKGLLEKYGP-----ERVLDTPITE 93 (270)
Q Consensus 28 ~~~~~~~~--~~~~~~a~~~~L~~~~~~d--~~i---v~l~~Dl~~~~g~~--~~~~~~~~~~gp-----~R~id~GIaE 93 (270)
..|..+.. -++=.+|+.+.+.+..+.| ..+ -+++. +.|+- .+...|. ++.. +-+|+-|+.|
T Consensus 17 d~y~~~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsG----YpGsP~~~id~~l~-~~~~~l~~~~i~fe~~~NE 91 (1165)
T PRK09193 17 DKYTLERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSG----YRGSPLGGLDQELW-RAKKHLAAHDIVFQPGLNE 91 (1165)
T ss_pred cccccccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEe----eCCCCHHHHHHHHH-HhhhhhcccceEEeeccCH
Confidence 45555432 4677888888888866666 333 34442 22221 1223333 2201 2788999999
Q ss_pred hHHHHHH---------HHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCCCCCCC
Q 024237 94 AGFTGIG---------VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH 162 (270)
Q Consensus 94 ~~~vg~A---------aGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~~G~tH 162 (270)
.-...++ .|-+..|.+-+++.= ..=+.|+-|-+++.. + +|...+=-|+++..| |..+. -..|
T Consensus 92 kvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K-~pGvn~aaD~l~~~n-~----~G~~~~GGvv~v~gDDpg~~SS-q~eq 164 (1165)
T PRK09193 92 DLAATAVWGSQQVNLFPGAKYDGVFGMWYGK-GPGVDRSGDVFRHAN-A----AGTSPHGGVLALAGDDHAAKSS-TLPH 164 (1165)
T ss_pred HHHHHHHhhhcccccccceeeccceEEEecC-cCCccccHhHHHHHH-h----hcCCCCCcEEEEEecCCCCccc-cchh
Confidence 9999999 666888998888775 345889999998643 3 232224455555432 21100 0112
Q ss_pred cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 163 ~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
|+. ++...-+|-|+.|+|++|+..+..+++. .+-||.+|.
T Consensus 165 -dSr--~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~ 208 (1165)
T PRK09193 165 -QSE--HAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKT 208 (1165)
T ss_pred -hhH--HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 222 2222236669999999999999988775 366999974
No 162
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=77.71 E-value=38 Score=33.35 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCCeeeccc-chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC--
Q 024237 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-- 156 (270)
Q Consensus 83 p~R~id~GI-aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~-- 156 (270)
|.+|+..+. +=...++.|.|.++.. .++++++.-- .|.+- ...|. .++. .++|++++. .++.++
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~-~~eL~-ta~~--------~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYS-IQALW-SAAQ--------LKLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhh-HHHHH-HHHH--------hCCCcEEEEEeChHHHHH
Confidence 678886421 1113456777777663 3455544322 33332 33443 3443 478887764 333221
Q ss_pred -------CCCC-C----CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -------GVGA-Q----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -------~~G~-t----H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+.+. . +...+..+.+.. |+..+.-.+.+|+..+++.+.+.++|++|.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 0 112234666666 888888889999999999999989999884
No 163
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=77.68 E-value=40 Score=33.32 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=65.6
Q ss_pred CCCeeecccc--hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPIT--EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GIa--E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..+-. =-..++.|.|.++.. -+|++++.-- .|.+-. ..| ..+.+ .++|++++.- ++..+
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~-~eL-~ta~~--------~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNV-QEL-GTIKR--------KQLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHH-HHHHH--------hCCCeEEEEEeCCccHH
Confidence 7788865321 112356677777663 5677766422 233332 233 22333 4788887643 32211
Q ss_pred ---------C---CCCC--CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ---------~---~G~t--H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+ .+.. |...+..+.+++ |..-+.-.+++|++..++.+++.++|.+|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111234666666 888888899999999999999999999984
No 164
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=77.39 E-value=49 Score=32.93 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~ 118 (270)
+.+.|.+.+ +++.++ ..|.+... .+. ...+.-.. |.+|++.|- . -...++.|.|.++.. -++++++.-- .
T Consensus 377 ~~~~l~~~l--~~~~ii-~~d~g~~~-~~~-~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~ 450 (574)
T PRK06882 377 VVEAIYRLT--NGDAYV-ASDVGQHQ-MFA-ALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGS 450 (574)
T ss_pred HHHHHHhhc--CCCeEE-EecCchhH-HHH-HHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchh
Confidence 555555544 234443 34544321 111 12233344 788988642 3 233567788888763 3455544322 3
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC---------CCCC---C---CcchHHHHHccCCCcEEEccC
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA---------GVGA---Q---HSHCYAAWYASVPGLKVLSPY 182 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~---------~~G~---t---H~~~~~a~lr~iPn~~V~~P~ 182 (270)
|.+- ...|-. +++ .++|++++.- ++.++ ..+. . +...+..+-+++ |+.-+.-.
T Consensus 451 f~~~-~~eL~t-a~~--------~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~ 519 (574)
T PRK06882 451 IQMN-IQELST-AKQ--------YDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQID 519 (574)
T ss_pred hhcc-HHHHHH-HHH--------hCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeC
Confidence 3333 344433 444 4788888753 33221 0111 1 111223566665 77778889
Q ss_pred CHHHHHHHHHHhHhC-CCCeEEe
Q 024237 183 SSEDARGLLKAAIRD-PDPVVFL 204 (270)
Q Consensus 183 d~~e~~~~l~~a~~~-~~P~~ir 204 (270)
+.+|++.+++.+++. ++|++|-
T Consensus 520 ~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 520 TPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999985 7899884
No 165
>PRK05858 hypothetical protein; Provisional
Probab=76.92 E-value=29 Score=34.29 Aligned_cols=112 Identities=16% Similarity=0.075 Sum_probs=65.3
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~ 157 (270)
|.+|+..+. +=...++.|.|.++. .-+|++++.-- .|.+ ....|- .+.+ .++|++++.- ++.++-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~-~~~eL~-Ta~~--------~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGF-SLMDVD-TLVR--------HNLPVVSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcC-cHHHHH-HHHH--------cCCCEEEEEEeCCchhh
Confidence 788887754 222234555555554 34666665422 2322 233342 2333 4788887643 332210
Q ss_pred --------CCC----C--CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 --------VGA----Q--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 --------~G~----t--H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.|. . +...+..+-+++ |..-..-.+++|++.+++.+++.++|++|-.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 527 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVNV 527 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 010 0 111223566665 7788899999999999999999999999953
No 166
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.18 E-value=41 Score=33.67 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=68.4
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|++.+- +=...++.|.|.++.- -++++++.-- .|.+.. ..| ..+.+ .++|++++. .++..+
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~-~eL-~Ta~r--------~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCI-QEL-STCLQ--------YDTPVKIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCH-HHH-HHHHH--------cCCCeEEEEEECCcchH
Confidence 789997643 4445577788888873 4566655422 233332 333 23433 578888864 343221
Q ss_pred --------CCCCC------CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-CCCeEEee
Q 024237 157 --------GVGAQ------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLE 205 (270)
Q Consensus 157 --------~~G~t------H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir~ 205 (270)
..+.. +...+..+-+++ |..-+.-.+.+|+...|+.+++. ++|++|-.
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV 559 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLDF 559 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 01111 101223566666 88888899999999999999974 78999853
No 167
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=76.08 E-value=55 Score=32.30 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCCCeeecc-cc-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC
Q 024237 82 GPERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA 156 (270)
Q Consensus 82 gp~R~id~G-Ia-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~ 156 (270)
.|.+|+..+ .. =-..++.|.|.++.. -+|++++.-- .|.+.. ..|- .+.+ .++|++++. .++..+
T Consensus 397 ~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~-~eL~-Ta~~--------~~lpi~ivV~NN~~y~ 466 (539)
T TIGR02418 397 RARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSS-MELE-TAVR--------LKLNIVHIIWNDNGYN 466 (539)
T ss_pred CCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchH-HHHH-HHHH--------hCCCeEEEEEECCcch
Confidence 377887543 22 123445667766653 4566655422 333332 3332 3444 478888764 333221
Q ss_pred C--------CC----CC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 G--------VG----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ~--------~G----~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
- .+ .. +...+..+.+++ |+.-..-.+++|++..++++++.++|.+|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 467 MVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred HHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 11 11 112234666776 888889999999999999999999999984
No 168
>PRK08322 acetolactate synthase; Reviewed
Probab=75.96 E-value=53 Score=32.36 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCCeeec-ccch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDT-PITE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~-GIaE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+.. |..- ...++.|.|.++.. -++++.+.-- .|.+-. ..|- .+.+ .++|++++.- ++.++
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~-~eL~-Ta~~--------~~lpv~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNS-QELE-TAVR--------LGLPLVVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccH-HHHH-HHHH--------hCCCeEEEEEeCCCcch
Confidence 6777743 3222 22456777777763 4566655422 233322 2232 2333 4788877643 33221
Q ss_pred -----------CCCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 157 -----------GVGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 157 -----------~~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+.. |...+.++.++. |++-+.-.+++|++..++.+++.++|++|-.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 525 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVIDC 525 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 01111 212234666666 8888888999999999999999899998843
No 169
>PLN02790 transketolase
Probab=75.51 E-value=17 Score=37.09 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---chHHHHHccCCCcEEEcc----CCHHHHHHHHHH
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS---HCYAAWYASVPGLKVLSP----YSSEDARGLLKA 193 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~---~~~~a~lr~iPn~~V~~P----~d~~e~~~~l~~ 193 (270)
.++|.+.. ++. .++| ++++..+...+-+|++.. ......+++. |+.++.+ .|.+++..+++.
T Consensus 153 ~~~EAl~~-A~~--------~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 153 ISNEAASL-AGH--------WGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEecCCccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHH
Confidence 77888854 554 4775 665554322222333331 2224678888 9999998 466777788888
Q ss_pred hHh-CCCCeEEeec
Q 024237 194 AIR-DPDPVVFLEN 206 (270)
Q Consensus 194 a~~-~~~P~~ir~~ 206 (270)
+.+ .++|++|...
T Consensus 223 a~~~~~~P~lI~~~ 236 (654)
T PLN02790 223 AKAVTDKPTLIKVT 236 (654)
T ss_pred HHhcCCCeEEEEEE
Confidence 776 5789999653
No 170
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=74.30 E-value=5.9 Score=33.51 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHhCCCCeEEeecccc---cCCCCCCcccccCCC-ccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHH
Q 024237 185 EDARGLLKAAIRDPDPVVFLENELL---YGESFPVSAEVLDSS-FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL 260 (270)
Q Consensus 185 ~e~~~~l~~a~~~~~P~~ir~~~~~---~~~~~~~~~~~~~~~-~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L 260 (270)
+|+..+|-+|+-.+|-+||---.-+ ...-....++++... ..-..++...+.+-++|.|++-.+.-.+|.+.|++|
T Consensus 25 edaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~L 104 (172)
T PF10740_consen 25 EDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQL 104 (172)
T ss_dssp HHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence 5778899999999999999521100 000000001111000 000112233455667899999999999999999999
Q ss_pred HhcCCCee
Q 024237 261 AKEGISAE 268 (270)
Q Consensus 261 ~~~Gi~~~ 268 (270)
.++||.+-
T Consensus 105 ~~~gi~~v 112 (172)
T PF10740_consen 105 IEQGIPFV 112 (172)
T ss_dssp HHHT--EE
T ss_pred HHCCCCEE
Confidence 99999764
No 171
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=73.17 E-value=23 Score=33.47 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhcCCcc-EEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCcchH--
Q 024237 94 AGFTGIGVGAAYYGLKP-VVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-- 166 (270)
Q Consensus 94 ~~~vg~AaGlA~~G~~P-i~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~~~~-- 166 (270)
-+.+|.|-++-..|... |+.+++.+=.. --++.+ |-++. .++||+|+..+ +..-+.--+. |+-
T Consensus 143 ~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~v--------~klPvvf~ieNN~yAiSvp~~~-q~~~~ 212 (358)
T COG1071 143 PLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAAV--------WKLPVVFVIENNQYAISVPRSR-QTAAE 212 (358)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHHH--------hcCCEEEEEecCCceeecchhh-cccch
Confidence 34455555555557455 55554442111 224555 43544 48999999764 3221111111 111
Q ss_pred ----HHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 167 ----AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 167 ----~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
-+.--.||+++| -=.|...+..+.++|++ .++|+.|-.
T Consensus 213 ~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 213 IIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred hHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 145558999999 66677666666666664 468999853
No 172
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=72.46 E-value=63 Score=32.16 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhH-hhhCCCCeeeccc-chh-HHHHHHHHHhhcCCccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL-EKYGPERVLDTPI-TEA-GFTGIGVGAAYYGLKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~-~~~gp~R~id~GI-aE~-~~vg~AaGlA~~G~~Pi~~~~~~-~ 118 (270)
+.+.|.+.+...++.+++. |.+... .....+. -.. |.++++.+- .=. ..++.|.|.++.--+|++++.-- .
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~~~~---~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGANTL---DLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-CchHHH---HHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCcc
Confidence 4456666665445666544 322110 0111222 234 778887653 111 24566677666645666665422 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CC-----CC------CCC--cchHHHHHccCCCcEEEccCC
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AG-----VG------AQH--SHCYAAWYASVPGLKVLSPYS 183 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~-----~G------~tH--~~~~~a~lr~iPn~~V~~P~d 183 (270)
|.+-. ..|- .+.+ .++|++++.- ++.. .. .+ ... ...+.++.+++ |..-+.-.+
T Consensus 453 f~m~~-~EL~-Ta~r--------~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 521 (569)
T PRK09259 453 FGFSG-MEVE-TICR--------YNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTT 521 (569)
T ss_pred ccccH-HHHH-HHHH--------cCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 33332 3342 3444 4888888643 3321 00 01 111 11223566666 777778899
Q ss_pred HHHHHHHHHHhHhCCCCeEEe
Q 024237 184 SEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 184 ~~e~~~~l~~a~~~~~P~~ir 204 (270)
++|+...++.++..++|++|-
T Consensus 522 ~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 522 PDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999985
No 173
>PRK05899 transketolase; Reviewed
Probab=72.42 E-value=27 Score=35.34 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCC---CcchHHHHHccCCCcEEEccC--CHHHHHHHHHHhHh
Q 024237 123 AIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQ---HSHCYAAWYASVPGLKVLSPY--SSEDARGLLKAAIR 196 (270)
Q Consensus 123 a~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~t---H~~~~~a~lr~iPn~~V~~P~--d~~e~~~~l~~a~~ 196 (270)
.+|.+.. ++. .++| ++++..+...+-.+.+ ....+...++++ |+.++.-. |..++..+++.+.+
T Consensus 167 ~~Eal~~-A~~--------~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~ 236 (624)
T PRK05899 167 SHEACSL-AGH--------LKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKA 236 (624)
T ss_pred HHHHHHH-HHH--------hCCCCEEEEEECCCCcccccccccccccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHh
Confidence 4666743 544 4776 5555544322212222 112334788887 89888767 89999999999988
Q ss_pred CCCCeEEeec
Q 024237 197 DPDPVVFLEN 206 (270)
Q Consensus 197 ~~~P~~ir~~ 206 (270)
.++|++|...
T Consensus 237 ~~~P~vI~v~ 246 (624)
T PRK05899 237 STKPTLIIAK 246 (624)
T ss_pred cCCCEEEEEE
Confidence 8899998643
No 174
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.29 E-value=62 Score=32.22 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=64.7
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|++.|- . =-..+..|.|.++. .-+|++++.-- .|.+. ...|- .+.+ .++|++++.- ++.++
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~-~~eL~-Ta~r--------~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMN-IQELS-TCLQ--------YGLPVKIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhcc-HHHHH-HHHH--------hCCCeEEEEEeCCccHH
Confidence 778887532 1 12235567777766 34666665422 23333 23332 2333 5788888743 33221
Q ss_pred --------CCC---CC---CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-CCCeEEe
Q 024237 157 --------GVG---AQ---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (270)
Q Consensus 157 --------~~G---~t---H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir 204 (270)
..+ .. +...+.++-+++ |+.-+.-.+.+|+..+|+++++. ++|++|-
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 011 11 111223566666 78888889999999999999986 8999984
No 175
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=71.67 E-value=57 Score=32.32 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=62.4
Q ss_pred CCCeeecccc-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC--
Q 024237 83 PERVLDTPIT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-- 156 (270)
Q Consensus 83 p~R~id~GIa-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-- 156 (270)
|.+++..+-. =-..++.|.|.++.. -++++++.-- .|.+ ....| ..+.+ .++|++++.- ++..+
T Consensus 406 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~-~~~el-~ta~~--------~~l~i~~vv~nN~~~~~~ 475 (557)
T PRK08199 406 YRTQLAPTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLM-NGQEL-ATAVQ--------YGLPIIVIVVNNGMYGTI 475 (557)
T ss_pred CCeEECCCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhc-cHHHH-HHHHH--------hCCCeEEEEEeCCcchHH
Confidence 5566554321 111244566666653 4566665422 2222 22333 23434 4788888653 43221
Q ss_pred -------CCC----CCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 157 -------GVG----AQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 157 -------~~G----~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..| ..... .+..+.+++ |+.-..-.+++|+...++.+++.++|++|..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~v 535 (557)
T PRK08199 476 RMHQEREYPGRVSGTDLTNPDFAALARAY-GGHGETVERTEDFAPAFERALASGKPALIEI 535 (557)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 001 11111 223566666 7777777899999999999999899999853
No 176
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=71.53 E-value=63 Score=32.45 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=67.1
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- . =...+..|.|.++.. -++++++.-- .|.+.+ ..| ..+.+ .++|++++. .++..+-
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~-~EL-~Ta~r--------~~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCI-QEM-STAVQ--------YNLPVKIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccH-HHH-HHHHH--------hCCCeEEEEEeCCccHH
Confidence 788886542 1 123446666666663 4667766432 233333 333 33444 478888864 3432210
Q ss_pred --------CCC----CCc--c-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 --------VGA----QHS--H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 --------~G~----tH~--~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.|. .+. . .+..+-+++ |++-+.-.+++|++.+++.++..++|.+|-.
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 551 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC 551 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 111 111 1 223566666 8888888999999999999999999999853
No 177
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=70.73 E-value=88 Score=31.13 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=64.7
Q ss_pred CCCeeeccc-ch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.||+..+- .= ...++.|.|.++.. -+|++++.-- .|.+. ...|- .+.+ .++|++++. .++..+
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~-~~eL~-Ta~~--------~~lpv~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSML-MGDFL-SLVQ--------LKLPVKIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhcc-HHHHH-HHHH--------hCCCeEEEEEeCCcccc
Confidence 678886421 11 22567777777653 4666665422 23332 23343 2333 478877764 333211
Q ss_pred ------CCCC-----C-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ------GVGA-----Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ------~~G~-----t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+. . +...+..+-+++ |+.-+.-.+++|+...++++++.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 0 111223555555 788888899999999999999989999985
No 178
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=70.17 E-value=82 Score=31.31 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+..+- . =-..+..|.|.++.. -++++++.-- .|.+.. ..| ..+.. .++|++++. .++.++
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG-TNL-ATAVD--------EHIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch-HHH-HHHHH--------hCCCeEEEEEECCchHH
Confidence 678886432 1 112346666666653 4565555422 333332 333 33433 478887764 333221
Q ss_pred -C------CCC----CC---cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -G------VGA----QH---SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -~------~G~----tH---~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .+. +. ...+.++.+++ |..-+.-.+++|++.+|+++.+.++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 111 11 11234666766 888888899999999999999999999884
No 179
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=68.84 E-value=83 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 167 ~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.++-+++ |+.-+.-.+.+|+...++.+++.++|++|-.
T Consensus 506 ~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 543 (597)
T PRK08273 506 ARFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLEV 543 (597)
T ss_pred HHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 4666666 8888889999999999999999999999853
No 180
>PRK07524 hypothetical protein; Provisional
Probab=68.54 E-value=96 Score=30.54 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCeee-c-ccc-hhHHHHHHHHHhhcC-CccEEEeeh-hhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC
Q 024237 83 PERVLD-T-PIT-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (270)
Q Consensus 83 p~R~id-~-GIa-E~~~vg~AaGlA~~G-~~Pi~~~~~-~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~ 156 (270)
|.+|++ . +.. =...++.|.|.++.. -++++++.- ..|.+.. ..|- .+.+ .++|++++.- ++..+
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~-~el~-ta~~--------~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTL-PELA-SAVE--------ADLPLIVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhH-HHHH-HHHH--------hCCCeEEEEEECCchH
Confidence 778886 2 111 112456677777762 455555432 1344443 3343 3444 4888887643 33221
Q ss_pred ------------CCCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 157 ------------GVGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 157 ------------~~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..|.. |...+..+.++. |++-..-.+++|++..++++++.++|++|-.
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~liev 526 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIEV 526 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 01111 211224566665 6666666899999999999999999999853
No 181
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=68.26 E-value=9.4 Score=33.17 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=25.0
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhc--CCCeee
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKE--GISAEV 269 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~--Gi~~~V 269 (270)
.||++.++|. .+.|+|+|++.|++. +++++|
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRv 68 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRV 68 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEE
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEE
Confidence 5899999997 558999999999998 888775
No 182
>PTZ00089 transketolase; Provisional
Probab=68.11 E-value=47 Score=34.00 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---chHHHHHccCCCcEEEccC----CHHHHHHHHHH
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS---HCYAAWYASVPGLKVLSPY----SSEDARGLLKA 193 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~---~~~~a~lr~iPn~~V~~P~----d~~e~~~~l~~ 193 (270)
.+||.+.. ++. .++| ++++..+...+-+|+++. ......++++ |+.++.+. |..++..+++.
T Consensus 164 ~~~EAl~~-A~~--------~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~ 233 (661)
T PTZ00089 164 VSQEALSL-AGH--------LGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEE 233 (661)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEECCCcccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHH
Confidence 67888854 554 4775 556554432233445542 2334789998 99999995 45556666666
Q ss_pred hHhC-CCCeEEeec
Q 024237 194 AIRD-PDPVVFLEN 206 (270)
Q Consensus 194 a~~~-~~P~~ir~~ 206 (270)
+.+. ++|++|...
T Consensus 234 a~~~~~~P~~I~~~ 247 (661)
T PTZ00089 234 AKKSKGKPKLIIVK 247 (661)
T ss_pred HHhcCCCcEEEEEE
Confidence 6654 689999754
No 183
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=67.91 E-value=33 Score=34.06 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCCccEEEeehhh--HHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCCCC-------------
Q 024237 96 FTGIGVGAAYYGLKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVG------------- 159 (270)
Q Consensus 96 ~vg~AaGlA~~G~~Pi~~~~~~~--f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~~G------------- 159 (270)
.++.|.|.++..-+|++++. .+ |.+- ...+-. +. +.++|++++. .++.++-.+
T Consensus 430 ~lpaaiGaala~~~~vv~i~-GDGsf~~~-~~eL~T-a~--------r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~ 498 (568)
T PRK07449 430 LLSTAAGVARASAKPTVALI-GDLSFLHD-LNGLLL-LK--------QVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFER 498 (568)
T ss_pred HHHHHHHHHhcCCCCEEEEe-chHHhhcC-cHHHHh-hc--------ccCCCeEEEEEECCCCccccCCCCCCCcchhhH
Confidence 46778887777456666654 43 2222 122222 22 2578887764 343221011
Q ss_pred ---CCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 160 ---AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 160 ---~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+...+.++-.++ |.+-+...+++|++..++.+++.++|++|-
T Consensus 499 ~~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 499 FFGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred hhcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 01111223444444 666777899999999999999989999984
No 184
>PRK06154 hypothetical protein; Provisional
Probab=67.04 E-value=1.4e+02 Score=29.76 Aligned_cols=111 Identities=21% Similarity=0.097 Sum_probs=65.1
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~ 157 (270)
|.+|+..+- +=...++.|.|.++.- -+|++++.-- .|.+- ...|- .+.+ .++|++++.- ++.++.
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~-~~EL~-Ta~r--------~~lpi~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMT-GMDFE-TAVR--------ERIPILTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhcc-HHHHH-HHHH--------hCCCeEEEEEECCccce
Confidence 789987642 1223456666666653 4676665432 23333 23342 3433 4888888643 432211
Q ss_pred C-------CC-----CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh---CCCCeEEe
Q 024237 158 V-------GA-----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (270)
Q Consensus 158 ~-------G~-----tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~ir 204 (270)
. +. .+...+.++-+++ |+.-+.=.+++|+..+|+.++. .++|++|-
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 0 11 1111223566666 7888888899999999999986 57799884
No 185
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=67.03 E-value=84 Score=31.29 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=63.6
Q ss_pred Ceeec-cc-chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC--C
Q 024237 85 RVLDT-PI-TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA--G 157 (270)
Q Consensus 85 R~id~-GI-aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~--~ 157 (270)
+|+.. |. +=...++.|.|.++.. .++++++.-- .|.+. ...+ +.+.+ .++|++++.- ++.++ .
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~-~~el-~ta~~--------~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHV-WAEL-ETARR--------MGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhH-HHHH-HHHHH--------hCCCeEEEEEeCCccCCEE
Confidence 56653 22 2245667788877764 4566655422 23322 3334 33444 4788887643 33211 0
Q ss_pred ------CCCCC------cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 ------VGAQH------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 ------~G~tH------~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+..+ ...+..+.++. |..-+.-.+.+|++..++.+++.++|++|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11111 11223566665 777777789999999999999999999984
No 186
>PLN02470 acetolactate synthase
Probab=66.87 E-value=93 Score=31.11 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- +=-..++.|.|.++.. -++++++.-- .|.+- ...| ..+.. .++|++++. .++..+-
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~-~~eL-~Ta~~--------~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMN-IQEL-ATIHV--------ENLPVKIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhcc-HHHH-HHHHH--------hCCCeEEEEEeCCcchH
Confidence 778886421 1122556667766663 4566655422 23332 2233 23333 478877764 3432210
Q ss_pred --------CCC----C----------CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 --------VGA----Q----------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 --------~G~----t----------H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+. . +...+.++.+++ |.+-..-.+++|+..+++.+++.++|++|-.
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lieV 554 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLDV 554 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 010 0 102234666666 7888888999999999999999899998853
No 187
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=65.53 E-value=1.3e+02 Score=30.31 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=63.7
Q ss_pred CCCeeeccc-chh-HHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE~-~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..+- .-. ..+..|.|.++.- -++++++.-- .|.+-. ..| ..+.+ .++|++++.- ++..+
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~-~eL-~Ta~r--------~~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNI-QEL-GTLAQ--------YGINVKTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhH-HHH-HHHHH--------hCCCeEEEEEECCcchH
Confidence 788886432 111 1334555555552 4666666422 233332 233 23333 4788888743 33211
Q ss_pred -------CCC----CC----CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 157 -------GVG----AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 157 -------~~G----~t----H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+ .+ +...+..+-+++ |++-+.-.+++|+...++.+++.++|++|-.
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIeV 556 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLIDV 556 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 000 01 101223566666 7777888999999999999999999999853
No 188
>PRK12474 hypothetical protein; Provisional
Probab=64.61 E-value=1.4e+02 Score=29.26 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccc-hhHHHHHHHHHhhc-CCccEEEeehh-h
Q 024237 42 ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT-EAGFTGIGVGAAYY-GLKPVVEFMTF-N 118 (270)
Q Consensus 42 a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIa-E~~~vg~AaGlA~~-G~~Pi~~~~~~-~ 118 (270)
.+-+.|.+.+.+| .+ +..|.+...... ..-|.-+. |.+|+..+-. =-..+..|.|.++. .-++++++.-- .
T Consensus 345 ~~~~~l~~~l~~d-~i--v~~d~g~~~~~~--~~~~~~~~-p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~ 418 (518)
T PRK12474 345 GVAQLIAHRTPDQ-AI--YADEALTSGLFF--DMSYDRAR-PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGG 418 (518)
T ss_pred HHHHHHHHHCCCC-eE--EEECCCcCHHHH--HHhhcccC-CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEcCch
Confidence 3555666665433 23 333444322211 11222244 7788865321 11134566666665 24556655422 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC----C---C-----CC-----C--Cc--chHHHHHccCCCc
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA----G---V-----GA-----Q--HS--HCYAAWYASVPGL 176 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~----~---~-----G~-----t--H~--~~~~a~lr~iPn~ 176 (270)
|.+- ...| ..+.+ .++|++++. .++.++ . . +. + +. ..+..+.+++ |.
T Consensus 419 f~m~-~qEL-~Ta~r--------~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~ 487 (518)
T PRK12474 419 AAYT-MQAL-WTMAR--------ENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GV 487 (518)
T ss_pred hcch-HHHH-HHHHH--------HCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CC
Confidence 3332 3333 33444 478777764 333221 0 0 10 0 11 1223566665 77
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.-..-.+++|+..+++.+++.++|++|-
T Consensus 488 ~~~rv~~~~eL~~al~~a~~~~~p~lie 515 (518)
T PRK12474 488 EASRATTAEEFSAQYAAAMAQRGPRLIE 515 (518)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 7788889999999999999989999873
No 189
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=64.34 E-value=64 Score=32.34 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=63.8
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- . =-..++.|.|.++.. -++++.+.-- .|.+- ...|- .+.+ .++|++++. .++..+-
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~-~~EL~-Ta~r--------~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFM-IEELA-VGAQ--------HNIPYIHVLVNNAYLGL 477 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhcc-HHHHH-HHHH--------hCCCeEEEEEeCCchHH
Confidence 788887542 1 222445556666653 4666665422 23332 33442 3433 578888764 3332210
Q ss_pred --------CC-----CCC-----------cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEe
Q 024237 158 --------VG-----AQH-----------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (270)
Q Consensus 158 --------~G-----~tH-----------~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir 204 (270)
.+ ... ...+..+-+++ |.+-..-.+++|++.+|+.+++ .++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 478 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 00 000 11224666666 7777777999999999999985 68899984
No 190
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=64.14 E-value=77 Score=31.72 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=63.9
Q ss_pred CCCCeeecccchhHH--HHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC
Q 024237 82 GPERVLDTPITEAGF--TGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (270)
Q Consensus 82 gp~R~id~GIaE~~~--vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~ 156 (270)
.|.+|+..|--=.-- +..|.|.++.- -++++++.-- .|.+. ...|- .+.+ .++|++++.- ++..+
T Consensus 397 ~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~-Ta~r--------~~lpv~ivv~nN~~~g 466 (550)
T COG0028 397 RPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMN-GQELE-TAVR--------YGLPVKIVVLNNGGYG 466 (550)
T ss_pred CCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhcc-HHHHH-HHHH--------hCCCEEEEEEECCccc
Confidence 377888874332221 23344444442 3667766422 34443 33332 2333 3678887643 33211
Q ss_pred --------CCCC--CC---cch-HHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 --------GVGA--QH---SHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 --------~~G~--tH---~~~-~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+. ++ ... +..+-.+. |.+-+.-.+++|++..|+.++..++|++|-
T Consensus 467 ~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 467 MVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred cchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 11 122 44555555 888888889999999999999999998884
No 191
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=63.94 E-value=12 Score=31.17 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=29.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.|.+++++++|...+..+..|+.|++.|.++.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 678999999999999999999999999876653
No 192
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.93 E-value=14 Score=26.13 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=25.0
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 240 dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++.|++.+. ....|++.+..|.++|+.+++
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~ 33 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEI 33 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEE
Confidence 677888776 457899999999999998876
No 193
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=63.92 E-value=1.4e+02 Score=30.13 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=64.4
Q ss_pred CCCeeecccchhHHHHHHHHHhhcC-CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCC
Q 024237 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGV 158 (270)
Q Consensus 83 p~R~id~GIaE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~ 158 (270)
|.++++...+=...++.|.|.++.. -+|++.+. .+-.. -....|.+ +.+ .++|++++.- ++.++-.
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~-GDG~f~~~g~~eL~t-av~--------~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFI-GDSTFFHTGIPGLIN-AVY--------NKANITVVILDNRITAMT 464 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEe-ccchhhhcCHHHHHH-HHH--------cCCCeEEEEEcCcceecc
Confidence 5566665333333345666666553 56777664 43333 33566655 333 4778877643 3222111
Q ss_pred C--CC------------CcchHHHHHcc--CCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 159 G--AQ------------HSHCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 159 G--~t------------H~~~~~a~lr~--iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
| .+ +...+..+.++ .+...|..|.+-+|+..+++.+++.++|.+|..
T Consensus 465 ~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 465 GHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 00 11123344444 455577788888889999999999899998864
No 194
>PRK11269 glyoxylate carboligase; Provisional
Probab=63.29 E-value=1.2e+02 Score=30.25 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|++.|- . =-..+..|.|.++.. -++++++.-- .|.+.. ..|- .+.+ .++|++++.- ++..+
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~-~eL~-Ta~~--------~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLI-EELA-VGAQ--------FNLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCH-HHHH-HHHH--------hCCCeEEEEEeCCchhH
Confidence 778888752 2 222556777777664 4666665422 233332 2332 2333 4788888643 33211
Q ss_pred ------C--CCC---C------------CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEe
Q 024237 157 ------G--VGA---Q------------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (270)
Q Consensus 157 ------~--~G~---t------------H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir 204 (270)
. ... + |...+..+-+++ |..-..-.+++|++..++.+++ .++|++|-
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lie 552 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVE 552 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 000 0 101223566666 7888888999999999999985 68899884
No 195
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=63.22 E-value=94 Score=31.28 Aligned_cols=112 Identities=20% Similarity=0.110 Sum_probs=66.7
Q ss_pred CCCeeeccc-chhH-HHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-TEAG-FTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE~~-~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|++.+- .-.. .++.|.|.++.. -++++++.-- .|.+. ...| ..+.+ .++|++++. .++.++
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~-~~eL-~Ta~~--------~~lpv~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMT-NQEL-ATCAI--------EGIPIKVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhcc-HHHH-HHHHH--------cCCCeEEEEEECCchHH
Confidence 788987643 3333 567778877773 5676665422 22222 2223 23333 477777764 333221
Q ss_pred --------CCC---C-----CCc--chHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-CCCeEEee
Q 024237 157 --------GVG---A-----QHS--HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLE 205 (270)
Q Consensus 157 --------~~G---~-----tH~--~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir~ 205 (270)
..+ . .|. ..+.++-+++ |+.-+.-.+++|++.+|+.+++. ++|++|-.
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev 573 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVIDF 573 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 000 0 111 1234666666 78778889999999999999985 89999853
No 196
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=63.07 E-value=79 Score=29.11 Aligned_cols=144 Identities=18% Similarity=0.101 Sum_probs=78.6
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccch---hHHHHHHHHHhhcC-CccE
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPV 111 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE---~~~vg~AaGlA~~G-~~Pi 111 (270)
.-..-.++.++|.++--...++++++ |++.+. +. | +++++.--= ...+.+|.|+++.. -+++
T Consensus 26 ~~~i~~~i~~al~~l~l~p~d~vivs-diG~s~-----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~V 91 (301)
T PRK05778 26 NFGILNAIIQALAELGLDPDKVVVVS-GIGCSS-----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEV 91 (301)
T ss_pred ChHHHHHHHHHHHHhcCCCCCEEEEe-CCcHhh-----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcE
Confidence 44456667777776633234555544 665321 11 2 133322111 22456777777663 4566
Q ss_pred EEeehhh--HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC---CCC-------C---------CC-CcchHHH
Q 024237 112 VEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA---AGV-------G---------AQ-HSHCYAA 168 (270)
Q Consensus 112 ~~~~~~~--f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~---~~~-------G---------~t-H~~~~~a 168 (270)
+++. .+ |..-....+.+ +++ .|+|++++.- ++.+ .+. | .. ....+..
T Consensus 92 V~i~-GDG~~~~mg~~eL~t-A~r--------~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~ 161 (301)
T PRK05778 92 IVVG-GDGDLASIGGGHFIH-AGR--------RNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCA 161 (301)
T ss_pred EEEe-CccHHHhccHHHHHH-HHH--------HCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHH
Confidence 6553 33 33344556655 444 4788887643 2221 110 1 00 0012235
Q ss_pred HHccCCCcEEE---ccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 169 WYASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 169 ~lr~iPn~~V~---~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+..+. |..-+ ...++.|+..+++.+++.++|++|-
T Consensus 162 lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 162 LALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred HHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 55555 56544 6899999999999999999999985
No 197
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=62.93 E-value=1e+02 Score=30.60 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCCeeeccc-ch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+..+- .= ...++.|.|.++.. -++++.+.-- .|.+...| | ..+.+ .++|++++. .++.++
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~e-L-~ta~r--------~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQE-L-SVIKE--------LSLPVKVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-H-HHHHH--------hCCCeEEEEEECchHHH
Confidence 678886532 11 22556677777663 3555555322 34443322 3 33433 477877764 333211
Q ss_pred --------CCCCC-C-----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 --------GVGAQ-H-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 --------~~G~t-H-----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+.. + ...+..+-++. |++-+.-.+.+|+..+++++.+.++|++|-
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 01111 1 01234566666 888888999999999999999989999985
No 198
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=62.03 E-value=1.7e+02 Score=28.90 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHH----HHHHHHhhcC-CccEEEeehh
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT----GIGVGAAYYG-LKPVVEFMTF 117 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~v----g~AaGlA~~G-~~Pi~~~~~~ 117 (270)
+.+.|.+.+.+| .+++. |.+... +. ..+.+-..|.+|+..+ -.+.+ ..|.|.++.. -+|++++.--
T Consensus 361 ~~~~l~~~l~~~-~iiv~--d~G~~~--~~--~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GD 431 (539)
T TIGR03393 361 FWQTLQTFLRPG-DIILA--DQGTSA--FG--AADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGD 431 (539)
T ss_pred HHHHHHHhcCCC-CEEEE--ccCchh--hh--hhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcC
Confidence 555566666533 34433 434322 21 1122222255777654 22333 3455555542 4566665432
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC------CCCCCC----cchHHHHHccCCCc----EEEccC
Q 024237 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA------GVGAQH----SHCYAAWYASVPGL----KVLSPY 182 (270)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~------~~G~tH----~~~~~a~lr~iPn~----~V~~P~ 182 (270)
--.+.....| ..+.+ .++|++++.- ++..+ +.+..+ ...+..+-+++ |. +-+.-.
T Consensus 432 G~f~m~~~EL-~Ta~~--------~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~~~~~v~ 501 (539)
T TIGR03393 432 GSAQLTIQEL-GSMLR--------DKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQAL-SLDPQSECWRVS 501 (539)
T ss_pred cHHHhHHHHH-HHHHH--------cCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHc-CCCCccceEEec
Confidence 2222233444 33444 4787777643 33221 111111 11223444443 43 366778
Q ss_pred CHHHHHHHHHHhHhCCCCeEEe
Q 024237 183 SSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 183 d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+..|++..++.+++.++|++|-
T Consensus 502 ~~~el~~al~~a~~~~~p~lie 523 (539)
T TIGR03393 502 EAEQLADVLEKVAAHERLSLIE 523 (539)
T ss_pred cHHHHHHHHHHHhccCCeEEEE
Confidence 9999999999999999999985
No 199
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=60.88 E-value=63 Score=36.80 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=67.2
Q ss_pred cccchhHHHHHHHHHhhcCCccEEE-eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcch
Q 024237 89 TPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC 165 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G~~Pi~~-~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~ 165 (270)
...-|+++.-+|-|+|+.-.+|-++ +....-....+-.+-. +.. ..+||++++.+.... +.|..+...
T Consensus 344 ~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~e-A~~--------d~vPlLvItgd~p~~~~~~ga~Q~iD 414 (1655)
T PLN02980 344 ACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVE-ASQ--------DFVPLLLLTADRPPELQDAGANQAIN 414 (1655)
T ss_pred eccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH-Hhh--------cCCCEEEEeCCCCHHHhcCCCCcccc
Confidence 5789999999999999996666443 3333444455555643 322 589999997653322 233322122
Q ss_pred HHHHHccCCCcEEEc--cCCH-------HHHHHHHHHhHhC-CCCeEEeec
Q 024237 166 YAAWYASVPGLKVLS--PYSS-------EDARGLLKAAIRD-PDPVVFLEN 206 (270)
Q Consensus 166 ~~a~lr~iPn~~V~~--P~d~-------~e~~~~l~~a~~~-~~P~~ir~~ 206 (270)
..++++.+--...-. |.+. ..+..+++.+... +|||+|-.|
T Consensus 415 q~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 415 QVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred hhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 247787776655444 3341 3455566666554 689999766
No 200
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=60.62 E-value=1.7e+02 Score=29.13 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=61.6
Q ss_pred CCCeeeccc-ch-hHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE-~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+..+. .- ...++.|.|.++.- -+|++.+.-- .|.+- ...| ..+.+ .++|++++. .++..+
T Consensus 398 ~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~-~~eL-~Tavr--------~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 398 KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMT-MQDL-LTQVQ--------YHLPVINIVFSNCTYGF 467 (575)
T ss_pred CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhh-HHHH-HHHHH--------hCCCeEEEEEeCCccHH
Confidence 677886653 11 11334444444442 3566655422 33333 2333 33444 478888763 443322
Q ss_pred -------CCCCCC-----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhH--hCCCCeEEe
Q 024237 157 -------GVGAQH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (270)
Q Consensus 157 -------~~G~tH-----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~--~~~~P~~ir 204 (270)
..+..+ ...+.++-+++ |..-..-.+.+|++..++.++ +.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 468 IKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 011111 11223566665 777677789999999999999 778999884
No 201
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=59.69 E-value=55 Score=30.80 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhhc--CCccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc--c-
Q 024237 93 EAGFTGIGVGAAYY--GLKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS--H- 164 (270)
Q Consensus 93 E~~~vg~AaGlA~~--G~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~--~- 164 (270)
+|-=+|...++|+. +..-++..+|.+=.. ..||.+.+ ++++ ++|+||+..+.. .+.|++|. .
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM-A~LW--------~LP~IFvCENN~-yGMGTs~~Rasa 238 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM-AALW--------KLPVIFVCENNH-YGMGTSAERASA 238 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH-HHHh--------CCCEEEEEccCC-CccCcchhhhhc
Confidence 44445555566654 444566555543221 55666644 3353 899999987532 24556652 1
Q ss_pred hHHHHH--ccCCCcEEEccCCH----HHHHHHHHHhHhCCCCeEEeec
Q 024237 165 CYAAWY--ASVPGLKVLSPYSS----EDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 165 ~~~a~l--r~iPn~~V~~P~d~----~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
+.+=+. .-|||+.| --.|- +-++.+.+++.+.++|.++-..
T Consensus 239 ~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 239 STEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred ChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 223222 34888875 11222 2233445555666899988544
No 202
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=59.66 E-value=35 Score=37.27 Aligned_cols=164 Identities=14% Similarity=0.015 Sum_probs=95.8
Q ss_pred CcCCccccc--cchHHHHHHHHHHHHhhcCCc--EE---EEecCCCCCCCcc--ccchhhHhh--hCC--CCeeecccch
Q 024237 27 LRNYSSAVK--QMMVREALNSALDEEMSADPK--VF---LMGEEVGEYQGAY--KISKGLLEK--YGP--ERVLDTPITE 93 (270)
Q Consensus 27 ~~~~~~~~~--~~~~~~a~~~~L~~~~~~d~~--iv---~l~~Dl~~~~g~~--~~~~~~~~~--~gp--~R~id~GIaE 93 (270)
...|..+.. -++=.+|+.+.+....+.|.. +- +++. +.|+- .+...|.+. +-. +=+++-|+.|
T Consensus 19 ~d~y~~~~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsg----YpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NE 94 (1186)
T PRK13029 19 DDKYTLERGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISG----YRGSPLGALDQALWKAKKHLAAADVVFQPGVNE 94 (1186)
T ss_pred ccccccccCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEe----cCCCCHHHHHHHHHHHhhhccccceEEeecCCH
Confidence 355665432 367778888887665555422 21 2221 22221 222334322 112 2688999999
Q ss_pred hHH---------HHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC--CCCCCCCCCC
Q 024237 94 AGF---------TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH 162 (270)
Q Consensus 94 ~~~---------vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~--G~~~~~G~tH 162 (270)
.-. +.++.|-+..|.+-+++.= ..=+.|+-|-+++.... |+..+=-|+++..| |..+. -..|
T Consensus 95 klAatav~Gsq~~e~~~~a~~dGv~~lwygK-~pGvn~aaD~l~h~n~~-----gt~~~GGvv~v~gDDpg~~SS-q~eq 167 (1186)
T PRK13029 95 ELAATAVWGSQQLELDPGAKRDGVFGMWYGK-GPGVDRSGDALRHANLA-----GTSPLGGVLVLAGDDHGAKSS-SVAH 167 (1186)
T ss_pred HHHHHHhhhhhhcccccceeeccceEEEecC-cCCcccchhHHHHhhcc-----ccCCCCcEEEEEecCCCCccc-cCHH
Confidence 999 5556666667888888765 34588999999974421 22234455555433 21100 0112
Q ss_pred cchHH-HHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 163 SHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 163 ~~~~~-a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
|+.. .... +|-|+.|+|++|+..+..+++. .+-||.++.
T Consensus 168 -dSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~ 211 (1186)
T PRK13029 168 -QSDHTFIAW---GIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKC 211 (1186)
T ss_pred -HHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3332 3333 6669999999999999888775 366999874
No 203
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=59.03 E-value=1.5e+02 Score=29.60 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=65.5
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~ 157 (270)
|.+|+..+- +=-..++.|.|.++.. -++++++.-- .|.+-. ..| ..+.+ .++|++++.- ++.++-
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~EL-~Ta~r--------~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNI-QEL-STALQ--------YDIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccH-HHH-HHHHH--------cCCCeEEEEEeCCccHH
Confidence 678887643 2233556666766663 3566655422 333333 333 23444 5888888643 432210
Q ss_pred ---------CCC-CC-----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-CCCeEEe
Q 024237 158 ---------VGA-QH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (270)
Q Consensus 158 ---------~G~-tH-----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir 204 (270)
.+. .+ ...+.++-+++ |..-..-.+++|+..+|+.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lIe 542 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFVD 542 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 111 01 01223566666 77888889999999999999985 8899884
No 204
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=59.02 E-value=1.7e+02 Score=29.16 Aligned_cols=111 Identities=21% Similarity=0.184 Sum_probs=62.8
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..+- +=...++.|.|.++.. -+|++++.-- .|.+-+ ..| ..+.+ .++|++++.- ++..+
T Consensus 420 p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Tavr--------~~lpvi~vV~NN~~yg~ 489 (579)
T TIGR03457 420 PRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM-NEI-MTAVR--------HDIPVTAVVFRNRQWGA 489 (579)
T ss_pred CCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH-HHH-HHHHH--------hCCCeEEEEEECcchHH
Confidence 788886532 1111334666666664 4666665422 233332 333 33434 5888877643 33221
Q ss_pred -------CCCC-----C-Ccc-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHh---CCCCeEEe
Q 024237 157 -------GVGA-----Q-HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (270)
Q Consensus 157 -------~~G~-----t-H~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~ir 204 (270)
..+. . |.. .+..+-+++ |.+-+.-.+++|+...|+.+++ .++|++|-
T Consensus 490 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 490 EKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 0111 1 111 224566665 7777788999999999999987 47799884
No 205
>PRK07064 hypothetical protein; Provisional
Probab=55.49 E-value=89 Score=30.78 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=62.8
Q ss_pred CCCeeeccc-chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC--
Q 024237 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-- 156 (270)
Q Consensus 83 p~R~id~GI-aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~-- 156 (270)
|.+++..+- +=-..++.|.|.++.. -++++++.-- .|.+- ...|- .+.+ .++|++++. .++.++
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~-~~eL~-Ta~~--------~~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLN-LGELA-TAVQ--------ENANMVIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEEEcchHhhhh-HHHHH-HHHH--------hCCCeEEEEEeCChhHHH
Confidence 566665422 1112335666666653 4566655422 22222 23332 2333 478888764 343221
Q ss_pred --------C---CCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 --------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 --------~---~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+ .+.. |...+..+.++. |++-..-.+++|++..++.+++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVE 524 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0111 212234566665 778788899999999999999989999984
No 206
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.72 E-value=2.3e+02 Score=28.19 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..|- . =-..++.|.|.++.. -++++++.-- .|.+.. ..| ..+.+ .++|++++.- ++..+
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~r--------~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNI-QEL-STALQ--------YELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHH-HHHHH--------hCCCeEEEEEeCchhhH
Confidence 678887642 1 123456666666663 3555555422 333332 333 33444 5888888643 43221
Q ss_pred --------CCCCC-C----c-chHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC---CCCeEEe
Q 024237 157 --------GVGAQ-H----S-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (270)
Q Consensus 157 --------~~G~t-H----~-~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~---~~P~~ir 204 (270)
..+.. + . ..+..+-+++ |..=+.-.+++|+..+++.+++. ++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 01111 1 0 1123566666 67777779999999999999985 8899884
No 207
>PRK12753 transketolase; Reviewed
Probab=54.43 E-value=59 Score=33.35 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---chHHHHHccCCCcEEEccCCHHHHHHH---HHHh
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS---HCYAAWYASVPGLKVLSPYSSEDARGL---LKAA 194 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~---~~~~a~lr~iPn~~V~~P~d~~e~~~~---l~~a 194 (270)
..+|.+.. ++. .++| ++++..+...+-+|+++. ......+++. |+.++.+.|..|+..+ ++.+
T Consensus 162 ~~~EA~~~-A~~--------~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a 231 (663)
T PRK12753 162 ISHEVCSL-AGT--------LGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEA 231 (663)
T ss_pred HHHHHHHH-HHH--------HCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHH
Confidence 66777744 554 4785 565544322222344432 2334788888 9999976676655554 5545
Q ss_pred HhC-CCCeEEeec
Q 024237 195 IRD-PDPVVFLEN 206 (270)
Q Consensus 195 ~~~-~~P~~ir~~ 206 (270)
.+. ++|++|...
T Consensus 232 ~~~~~~P~~I~~~ 244 (663)
T PRK12753 232 QSVKDKPSLIICR 244 (663)
T ss_pred HHCCCCeEEEEEE
Confidence 543 679999754
No 208
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=53.71 E-value=18 Score=28.49 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCcccc---CCceEEeEeCCcEEEEEechhHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTITAFSKIVGLS 253 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~---~Gk~~vl~~G~dvtIva~G~~v~~a 253 (270)
.|+.|.+.+|+..+++++.+++-|+.++-...-+. . .........+. +.+-..+.+....+.+..|....+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~----~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-G----QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-S----TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-c----ccccCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 58999999999999999999999999975322111 0 00101111122 2222233344667778889888876
Q ss_pred HHHH
Q 024237 254 LKAA 257 (270)
Q Consensus 254 l~Aa 257 (270)
.+..
T Consensus 78 ~~~l 81 (139)
T PF01565_consen 78 YEAL 81 (139)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6653
No 209
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=53.53 E-value=22 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCcEEEEEec--h-hHHHHHHHHHHHHhcCCCeeeC
Q 024237 238 GKDVTITAFS--K-IVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 238 G~dvtIva~G--~-~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
..++.|++.+ . ....|++.++.|.++|++++++
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d 61 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD 61 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3468888888 4 5578999999999999999863
No 210
>PRK08611 pyruvate oxidase; Provisional
Probab=53.20 E-value=1.5e+02 Score=29.53 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCCeee-cccchh-HHHHHHHHHhhc-CCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLD-TPITEA-GFTGIGVGAAYY-GLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id-~GIaE~-~~vg~AaGlA~~-G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+. .+..-. ..+..|.|.++. .-+|++.+.-- .|.+- ...| ..+.+ .++|++++. .++..+
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~-~~eL-~Ta~r--------~~l~~iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMV-MQDF-VTAVK--------YKLPIVVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhh-HHHH-HHHHH--------hCCCeEEEEEeCCcchH
Confidence 667774 322211 134455555554 24666665422 23333 3334 23444 478877654 333221
Q ss_pred ------CCCC----CC--cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 157 ------GVGA----QH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 157 ------~~G~----tH--~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+. +. ...+.++-+++ |..-+...+++|++.+++++++.++|++|..
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 527 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIIDV 527 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0111 11 11234566665 7778888999999999999999999999853
No 211
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.93 E-value=23 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.4
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 240 dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++.|++.+. ....|++.++.|.+.|+++++
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~ 33 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV 33 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE
Confidence 566777765 567999999999999998876
No 212
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=51.32 E-value=2.6e+02 Score=27.88 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCCeeeccc-chh-HHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC-
Q 024237 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE~-~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~- 156 (270)
|.+|+..+- .=. ..++.|.|.++.. -+|++.+.-- .|.+- ...|-. +.+ .++|++++. .++.++
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~-~~el~T-a~~--------~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGIS-MNEVMT-AVR--------HNWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhcc-HHHHHH-HHH--------hCCCeEEEEEeCchhHH
Confidence 778886532 222 2456667777664 4676665432 23333 333433 433 588888765 343221
Q ss_pred ---------C---CCCCCcc--hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC---CCCeEEe
Q 024237 157 ---------G---VGAQHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (270)
Q Consensus 157 ---------~---~G~tH~~--~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~---~~P~~ir 204 (270)
. .+..... .+..+-+++ |.+-+.-.+++|++..++.+++. ++|++|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0 1111111 223555555 66666678999999999999975 4899874
No 213
>PRK07586 hypothetical protein; Validated
Probab=50.81 E-value=2.5e+02 Score=27.42 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 167 ~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+-+++ |..-..-.+++|+..+++.+++.++|++|-
T Consensus 475 ~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~lie 511 (514)
T PRK07586 475 VALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLIE 511 (514)
T ss_pred HHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3555555 666677789999999999999988999873
No 214
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=50.41 E-value=25 Score=28.80 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhc-CCCeeeC
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVN 270 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V~ 270 (270)
....|+|.++|..+..||..+..++++ ++.++|+
T Consensus 60 ~~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~V~ 94 (144)
T PF12328_consen 60 KSEEVTVKGTGKAIEKALSLALWFQRKKGYKVEVR 94 (144)
T ss_dssp --SEEEEEEEGGGHHHHHHHHHHHHHTT---EEEE
T ss_pred CccEEEEEeccHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 346899999999999999999999876 7777763
No 215
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=50.39 E-value=26 Score=31.30 Aligned_cols=68 Identities=26% Similarity=0.224 Sum_probs=46.9
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.++.|.||.-...+=+ ..++|..+-.+|. |...-| .-+|+.|++.++|..-+-+--|
T Consensus 19 ~vilpGdP~R~~~iA~---lld~~~~va~~Re----------------f~~~~g----~~~g~~v~v~StGIGgPSaaIA 75 (248)
T COG2820 19 LVILPGDPERVEKIAK---LLDNPVLVASNRE----------------FRTYTG----TYNGKPVTVCSTGIGGPSAAIA 75 (248)
T ss_pred eEEecCCHHHHHHHHH---Hhccchhhhhccc----------------eEEEEE----EEcCeEEEEEecCCCCchHHHH
Confidence 4999999998776554 3356666533321 111112 1248899999999999988889
Q ss_pred HHHHHhcCCCe
Q 024237 257 AEILAKEGISA 267 (270)
Q Consensus 257 a~~L~~~Gi~~ 267 (270)
.|+|...|.+.
T Consensus 76 vEEL~~lGa~t 86 (248)
T COG2820 76 VEELARLGAKT 86 (248)
T ss_pred HHHHHhcCCeE
Confidence 99999888654
No 216
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.63 E-value=1.1e+02 Score=30.45 Aligned_cols=112 Identities=18% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~ 157 (270)
|.+|+..+- +=...+..|.|.++.. -++++++.-- .|.+.. ..|- .+.. .++|++++.- ++..+.
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~-~el~-Ta~~--------~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNI-QELQ-TIAE--------NNIPVKVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccH-HHHH-HHHH--------hCCCeEEEEEECCccHH
Confidence 678886432 1123456666666663 3566655422 344343 3343 3444 4888888753 332210
Q ss_pred --------CC-----CCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 --------VG-----AQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 --------~G-----~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.+ ..... .+..+-+++ |+.-..-.+++|+..+++.+.+.++|++|-.
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~liev 542 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVDF 542 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 00 01101 123555555 6655666899999999999999999998853
No 217
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=49.52 E-value=56 Score=28.88 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=45.1
Q ss_pred cEEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHH
Q 024237 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK 255 (270)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~ 255 (270)
=.|+.|.||++++.+-++. + ++..+..+| .+.+-.| .-+|.+|+++++|.....|--
T Consensus 13 ~~vi~~Gdp~r~~~ia~~l-~--~~~~~~~~r----------------~~~~~~G----~~~g~~v~v~~~GiG~~~aai 69 (245)
T TIGR01718 13 TYVILPGDPDRVEKIAAHM-D--KPVKVASNR----------------EFVTYRG----ELDGKPVIVCSTGIGGPSTAI 69 (245)
T ss_pred CeEEecCCHHHHHHHHHhc-C--CcEEEeccC----------------CEEEEEE----EECCEEEEEEcCCCCHHHHHH
Confidence 4689999999999877643 2 333221111 1111112 226889999999998888877
Q ss_pred HHHHHHhcCCCe
Q 024237 256 AAEILAKEGISA 267 (270)
Q Consensus 256 Aa~~L~~~Gi~~ 267 (270)
++++|-+.|++.
T Consensus 70 ~~~eLi~~g~~~ 81 (245)
T TIGR01718 70 AVEELAQLGART 81 (245)
T ss_pred HHHHHHHhCCCE
Confidence 888887766654
No 218
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=49.18 E-value=28 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=24.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCCeeeC
Q 024237 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 240 dvtIva~G~----~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
++.|+..+. ....|++.+..|.+.|+.++++
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~ 37 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYD 37 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEec
Confidence 567777664 5678999999999999988763
No 219
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=48.28 E-value=32 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcC
Q 024237 239 KDVTITAFSKIVGLSLKAAEILAKEG 264 (270)
Q Consensus 239 ~dvtIva~G~~v~~al~Aa~~L~~~G 264 (270)
..|+|.|.|..+..|+..|+.|+...
T Consensus 31 ~~V~l~g~G~aI~kaI~vaei~K~~~ 56 (70)
T PF01918_consen 31 DEVVLKGRGKAISKAISVAEILKRRF 56 (70)
T ss_dssp SEEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999863
No 220
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.72 E-value=31 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.8
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCCeee
Q 024237 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 240 dvtIva~G~----~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.++|+..+. ....|++.++.|.+.|+.+++
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~ 36 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL 36 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE
Confidence 466776654 567899999999999999876
No 221
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=47.67 E-value=1.7e+02 Score=24.48 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~ 118 (270)
+.+.|.+.+..| .+++ .|.+... +. ...+.-.. |.+++..+- +=-..++.|.|.++.- .++++.+.-- .
T Consensus 7 ~~~~l~~~l~~~-~iiv--~d~g~~~--~~-~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKPN-DILV--AETGTSW--FG-ALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGS 79 (183)
T ss_pred HHHHHHHhcCCC-CEEE--ECCchHH--Hh-hhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCch
Confidence 445555555433 3433 3444321 21 12233333 677887532 1122345666666552 3555554322 3
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCC----CCCC--CC----cchHHHHHccCC---CcEEEccCCH
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA----GVGA--QH----SHCYAAWYASVP---GLKVLSPYSS 184 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~----~~G~--tH----~~~~~a~lr~iP---n~~V~~P~d~ 184 (270)
|.+- ...+-. ++. .++|++++. .++..+ ..+. .+ ...+..+....- +...+...++
T Consensus 80 f~~~-~~el~t-a~~--------~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~ 149 (183)
T cd02005 80 FQMT-VQELST-MIR--------YGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTE 149 (183)
T ss_pred hhcc-HHHHHH-HHH--------hCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCH
Confidence 4333 333443 333 356666653 333221 0111 11 112235666552 3677777999
Q ss_pred HHHHHHHHHhHh-CCCCeEEe
Q 024237 185 EDARGLLKAAIR-DPDPVVFL 204 (270)
Q Consensus 185 ~e~~~~l~~a~~-~~~P~~ir 204 (270)
+|++.+++.+++ .++|++|-
T Consensus 150 ~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 150 GELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred HHHHHHHHHHHhcCCCcEEEE
Confidence 999999999998 78999884
No 222
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=47.63 E-value=1.4e+02 Score=30.32 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=24.3
Q ss_pred HccCCCcEEEccCCHHHHHHHHH---HhHhCCCCeEEeec
Q 024237 170 YASVPGLKVLSPYSSEDARGLLK---AAIRDPDPVVFLEN 206 (270)
Q Consensus 170 lr~iPn~~V~~P~d~~e~~~~l~---~a~~~~~P~~ir~~ 206 (270)
|+++ |+.++-|.|..|...+++ .+-+.++|++|...
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~~ 272 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQ 272 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4455 777887888876665554 44445789999654
No 223
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=47.18 E-value=2e+02 Score=28.81 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCeeeccc-chh-HHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-
Q 024237 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (270)
Q Consensus 83 p~R~id~GI-aE~-~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~- 156 (270)
|.+|+..+- .=. ..++.|.|.++.- -++++++.-- .|.+.. ..| ..+.+ .++|++++.- ++..+
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNL-QEL-GTIAQ--------YNLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhH-HHH-HHHHH--------hCCCeEEEEEECCcchH
Confidence 778886422 221 2445666766652 3555555322 333332 233 33444 4788877643 43211
Q ss_pred ---------C---CCC--C-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ---------G---VGA--Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ---------~---~G~--t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+ .+. . |...+..+.+++ |+.-..-.+++|+...++.+.+.++|.+|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 010 0 111234666666 788788899999999999999989999885
No 224
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=46.15 E-value=1.2e+02 Score=28.30 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCCEEEEecC-CCCCCCCCCCc---c-hHHHHHc--cCCCcEEEccCCHHH----HHHHHHHhHhCCCCeEEee
Q 024237 142 ISVPIVFRGPN-GAAAGVGAQHS---H-CYAAWYA--SVPGLKVLSPYSSED----ARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 142 ~~~pvi~~~~~-G~~~~~G~tH~---~-~~~a~lr--~iPn~~V~~P~d~~e----~~~~l~~a~~~~~P~~ir~ 205 (270)
.++|++++..+ +... ..+++. . .+..+.+ .+|+..|= -.|..+ ++.+++.+.+.++|++|-.
T Consensus 171 ~~LPvi~Vv~NN~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~~Vd-g~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 171 FKAPVVFFVQNNQWAI-SVPRSKQTAAPTLAQKAIAYGIPGVQVD-GNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred cCCCEEEEEECCCCcc-ccchhhhhCCcCHHHHHhhCCCCEEEEC-CCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58999998754 3221 111111 1 1223333 35555541 222222 3566777777789999954
No 225
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=44.79 E-value=95 Score=29.01 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHccCCCcEEEcc---CCHHHHHHHHHHhHhC-CCCeEEeec
Q 024237 167 AAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLEN 206 (270)
Q Consensus 167 ~a~lr~iPn~~V~~P---~d~~e~~~~l~~a~~~-~~P~~ir~~ 206 (270)
..-+++. |++|+.- -|.+++..+++.+-.. +.|++|..+
T Consensus 199 ~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 199 AKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 4778887 9999987 5666777777777765 789999765
No 226
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=43.58 E-value=29 Score=32.79 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=25.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHH-hcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILA-KEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~-~~Gi~~~V 269 (270)
+..+++||++|+....+.+++..+. ++|+++.+
T Consensus 255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~ 288 (365)
T COG0674 255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGL 288 (365)
T ss_pred CCcCEEEEEeccchHhHHHHHHHHHHhcCceEEE
Confidence 5568999999988888888877665 77877653
No 227
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=40.97 E-value=1e+02 Score=31.42 Aligned_cols=110 Identities=19% Similarity=0.301 Sum_probs=65.9
Q ss_pred ecccchhHHHHHHHHHhhcCCccEEEee-hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCC-C---CCC---CC
Q 024237 88 DTPITEAGFTGIGVGAAYYGLKPVVEFM-TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-A---AAG---VG 159 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~G~~Pi~~~~-~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G-~---~~~---~G 159 (270)
|+-++=..-+|+|.|++...-+.++.+. =++|.--....|+|.+ + .+.+++++.-+. . +++ .|
T Consensus 425 d~t~~mGssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV-~--------n~~~~~~vvLdN~~tAMTGgQp~pg 495 (640)
T COG4231 425 DTTTMMGSSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAV-Y--------NKANILVVVLDNRTTAMTGGQPHPG 495 (640)
T ss_pred hhhhhccchhhhccccccccCCceEEEeccccccccCcHHHHHHH-h--------cCCCeEEEEEeccchhccCCCCCCC
Confidence 3333333446888888866544444443 3466778888898866 5 355555542111 1 111 11
Q ss_pred C--------CCcchHHHHHccC--CCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec
Q 024237 160 A--------QHSHCYAAWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 160 ~--------tH~~~~~a~lr~i--Pn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
. +-...++.+.|.+ --+..+.|.|-.++...++.+++..+|.+|...
T Consensus 496 ~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak 552 (640)
T COG4231 496 TGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred cccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEc
Confidence 1 1113445555544 344566689999999999999999999998754
No 228
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=40.47 E-value=15 Score=28.35 Aligned_cols=33 Identities=33% Similarity=0.304 Sum_probs=22.4
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
+.-|+.||++|.... .--+..+.|++.||.+++
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~ 85 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEV 85 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEE
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEE
Confidence 467899999997542 344566778888998876
No 229
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=36.45 E-value=22 Score=27.54 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=20.0
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhcCCCeee
Q 024237 239 KDVTITAFSKIV-GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 239 ~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~V 269 (270)
-++.||++|... ..--+..+.|++.||.+++
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~ 84 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEV 84 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEE
Confidence 578888888633 2223445667778887775
No 230
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=35.99 E-value=3.9e+02 Score=25.64 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchh-----hHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehh
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-----LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~-----~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~ 117 (270)
+.+-|.++.++.++|.+=-+|+. .+|+.+.... +.++.|..|+|--==|-||-++.|...|+.|+.=.++.-+-
T Consensus 127 ~AkRLte~~q~ga~IylKrEdln-h~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAe 205 (477)
T KOG1395|consen 127 RAKRLTEHCQTGARIYLKREDLN-HTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAE 205 (477)
T ss_pred HHHHHHHHhCCCCEEEEEecCCC-ccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechh
Confidence 35667888888889999999985 5666544222 56788999998877788999999999999999988887777
Q ss_pred hHHHHHHHHHHHHH
Q 024237 118 NFSMQAIDHIINSA 131 (270)
Q Consensus 118 ~f~~ra~dqi~~~~ 131 (270)
++=..+|.-+|+.+
T Consensus 206 d~~rqalnvfrmrl 219 (477)
T KOG1395|consen 206 DYRRQALNVFRMRL 219 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888765
No 231
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=35.97 E-value=3e+02 Score=28.19 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---chHHHHHccCCCcEEEccCCHH---HHHHHHHHh
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS---HCYAAWYASVPGLKVLSPYSSE---DARGLLKAA 194 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~---~~~~a~lr~iPn~~V~~P~d~~---e~~~~l~~a 194 (270)
..+|.+.. ++. .++| ++++..+...+-+|++.. ......+++. |+.++.-.|.. ++..+++.+
T Consensus 158 ~~~EA~~~-A~~--------~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a 227 (653)
T TIGR00232 158 ISYEVASL-AGH--------LKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEA 227 (653)
T ss_pred HHHHHHHH-HHH--------hCCCcEEEEEeCCCeeeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHH
Confidence 57777754 444 4887 444443322222344432 2334788887 99888754555 444555555
Q ss_pred HhC-CCCeEEeec
Q 024237 195 IRD-PDPVVFLEN 206 (270)
Q Consensus 195 ~~~-~~P~~ir~~ 206 (270)
.+. ++|++|..+
T Consensus 228 ~~~~~~P~~I~~~ 240 (653)
T TIGR00232 228 KASKDKPTLIEVT 240 (653)
T ss_pred HhCCCCCEEEEEE
Confidence 444 479999754
No 232
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=35.76 E-value=1.9e+02 Score=29.58 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=26.6
Q ss_pred HHHccCCCcEEEccCCHHHHHHHHHH---hHh-CCCCeEEeec
Q 024237 168 AWYASVPGLKVLSPYSSEDARGLLKA---AIR-DPDPVVFLEN 206 (270)
Q Consensus 168 a~lr~iPn~~V~~P~d~~e~~~~l~~---a~~-~~~P~~ir~~ 206 (270)
..|+++ |++++-|.|..|...+.+. +-+ .++|++|...
T Consensus 240 ~~f~a~-G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~ 281 (641)
T PRK12571 240 TLFEEL-GFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVV 281 (641)
T ss_pred hHHHHc-CCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 456676 8999988787776655544 433 4779999754
No 233
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=35.69 E-value=24 Score=27.70 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=22.1
Q ss_pred EeCCcEEEEEechhH-HHHHHHHHHHHhcCCCeee
Q 024237 236 REGKDVTITAFSKIV-GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 236 ~~G~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~V 269 (270)
.+.-|++||++|... ..--+..+.|++.||.+++
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vev 86 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEV 86 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEE
Confidence 345678888888743 2233445667788888775
No 234
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.29 E-value=41 Score=31.40 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEec
Q 024237 41 EALNSALDEEMSADPKVFLMGE 62 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~ 62 (270)
..|.++|...+++||||+++++
T Consensus 185 ~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 185 LSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEec
Confidence 4588999999999999999996
No 235
>PLN02573 pyruvate decarboxylase
Probab=34.04 E-value=4.2e+02 Score=26.49 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=60.7
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
+.+|+..+- . =-..+..|.|.++.- -++++.+.-- .|.+- ...|- .+++ .++|++++. .++.++-
T Consensus 418 ~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~-~~EL~-Ta~r--------~~lpvv~vV~NN~~yg~ 487 (578)
T PLN02573 418 GCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVT-AQDVS-TMIR--------CGQKSIIFLINNGGYTI 487 (578)
T ss_pred CCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhH-HHHHH-HHHH--------cCCCCEEEEEeCCceeE
Confidence 345665442 1 111344555555552 3555555322 33333 33443 3444 578888764 3432210
Q ss_pred ----C----CCCCcchHHHHHccCC---C-cEEEccCCHHHHHHHHHHhHh--CCCCeEEe
Q 024237 158 ----V----GAQHSHCYAAWYASVP---G-LKVLSPYSSEDARGLLKAAIR--DPDPVVFL 204 (270)
Q Consensus 158 ----~----G~tH~~~~~a~lr~iP---n-~~V~~P~d~~e~~~~l~~a~~--~~~P~~ir 204 (270)
. +..+...+..+-+++- | +.-..-.+++|++.+|+.++. .++|.+|-
T Consensus 488 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 488 EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred EEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 1111112245666652 3 777788889999999999984 68899985
No 236
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=34.02 E-value=2.4e+02 Score=28.99 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhc----CC--ccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCC-----CCCCC
Q 024237 95 GFTGIGVGAAYY----GL--KPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-----AGVGA 160 (270)
Q Consensus 95 ~~vg~AaGlA~~----G~--~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~-----~~~G~ 160 (270)
+-+++|.|||+. |. ++|+. .----++ -+||.+.+ +++ .+-+++++..+ +.. +.+|+
T Consensus 181 ~glS~a~GmA~a~~l~g~~~~v~~v-iGDGel~eG~~wEAl~~-a~~--------~~~nlivIlddN~~~~~~~~q~~g~ 250 (641)
T PLN02234 181 TTLSAGLGMAVGRDLKGMNNSVVSV-IGDGAMTAGQAYEAMNN-AGY--------LHSNMIVILNDNKQVSLPTANLDGP 250 (641)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEE-EccchhhhHHHHHHHHH-Hhh--------hCCCEEEEEECCCCCcccccccCCC
Confidence 556777777765 42 34443 3222222 78899855 665 34577777654 321 23454
Q ss_pred CCc---c----------------hHHHHHccCCCcEEEccCCHHHHHHHHHH---hHhC--CCCeEEeec
Q 024237 161 QHS---H----------------CYAAWYASVPGLKVLSPYSSEDARGLLKA---AIRD--PDPVVFLEN 206 (270)
Q Consensus 161 tH~---~----------------~~~a~lr~iPn~~V~~P~d~~e~~~~l~~---a~~~--~~P~~ir~~ 206 (270)
+.. . .....|+.+ |+.++-|.|..|+..+++. +-.. ++|++|...
T Consensus 251 ~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~f-G~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~ 319 (641)
T PLN02234 251 TQPVGALSCALSRLQSNCGMIRETSSTLFEEL-GFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVV 319 (641)
T ss_pred CCCcccHHHHHHHhhcccccccCCHHHHHHHc-CCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 431 1 123677887 9999988888777765544 3222 479999654
No 237
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=33.99 E-value=1.7e+02 Score=29.06 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~ 118 (270)
+.+.|.+.+..+ ++++ .|.. .. ..-+.-.- |.+|+..+- +=...++.|.|.++.. -++++++.-- .
T Consensus 390 ~~~~l~~~l~~~-~~vv--~~~~----~~--~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~ 459 (569)
T PRK08327 390 LSYCLGEVADEY-DAIV--TEYP----FV--PRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGS 459 (569)
T ss_pred HHHHHHHhcCcc-ceEE--eccH----HH--HHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcc
Confidence 556666666544 4444 3322 11 12233233 677887642 3444556677766663 4566655422 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC----------CCC------CC---C--cchH-HHHHccCCC
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA----------GVG------AQ---H--SHCY-AAWYASVPG 175 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~----------~~G------~t---H--~~~~-~a~lr~iPn 175 (270)
|.+-..++..+.+.+ .++|++++.- ++.++ ..| .. . ...+ ..+.+++ |
T Consensus 460 f~~~~~e~~l~ta~~--------~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G 530 (569)
T PRK08327 460 FIFGVPEAAHWVAER--------YGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-G 530 (569)
T ss_pred eeecCcHHHHHHHHH--------hCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-C
Confidence 333334544444544 4788888643 33211 001 01 0 1112 3455554 4
Q ss_pred cEEEccCCHHHHHHHHHHhHhC----CCCeEEe
Q 024237 176 LKVLSPYSSEDARGLLKAAIRD----PDPVVFL 204 (270)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~----~~P~~ir 204 (270)
...+.-.+++|+...++.+++. ++|++|-
T Consensus 531 ~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 531 GYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred CCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4555557999999999999875 6799884
No 238
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=33.91 E-value=54 Score=30.05 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=53.6
Q ss_pred HHHHHHHhhc----CCccEEEeehhhHHH---HHHHHHHHHHhhccccCCCCCCCCEEEEecC-C--CCCC-CCCCCc--
Q 024237 97 TGIGVGAAYY----GLKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G--AAAG-VGAQHS-- 163 (270)
Q Consensus 97 vg~AaGlA~~----G~~Pi~~~~~~~f~~---ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G--~~~~-~G~tH~-- 163 (270)
+.+|+|.|+. |...++..++.+-.. ..+|.+. -++. .++||+++..+ + .+.. .-.+.+
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN-~A~~--------~~lPvifvveNN~~aist~~~~~~~~~~ 177 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALN-LAAL--------WKLPVIFVVENNQYAISTPTEEQTASPD 177 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHH-HHHH--------TTTSEEEEEEEESEETTEEHHHHCSSST
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHHH-HHhh--------ccCCeEEEEecCCcccccCccccccccc
Confidence 4555566554 655555554454332 4456663 3444 48999998764 2 2211 000111
Q ss_pred chHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 164 ~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
..+-+..-.+|++.| -=.|+.++...++.|++ .++|++|-.
T Consensus 178 ~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 178 IADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 222344456777775 55777777777777665 378999954
No 239
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=33.90 E-value=5.1e+02 Score=26.14 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=86.0
Q ss_pred HHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehh-hHHHHHHH
Q 024237 47 LDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF-NFSMQAID 125 (270)
Q Consensus 47 L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~-~f~~ra~d 125 (270)
+.++.+..-+=+|+++-. ..+ -++-. ...+ ++=-.-+-|.|-.+-=+|.|+|+.-.+|++-+..+ +..-.-|-
T Consensus 15 ~eeL~r~GV~~vvicPGS---RST-PLala-~~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~P 88 (566)
T COG1165 15 LEELARLGVRDVVICPGS---RST-PLALA-AAAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYP 88 (566)
T ss_pred HHHHHHcCCcEEEECCCC---CCc-HHHHH-HHhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccH
Confidence 444555556677888722 222 12222 2344 44445588999999999999999999997766544 44445556
Q ss_pred HHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcchH--HHHHccCCCcEEEc--cCCHHHHHHHHHHhH----
Q 024237 126 HIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCY--AAWYASVPGLKVLS--PYSSEDARGLLKAAI---- 195 (270)
Q Consensus 126 qi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~~--~a~lr~iPn~~V~~--P~d~~e~~~~l~~a~---- 195 (270)
.|. .+.+ ..+|+|+.+.|-.. .+-|.- |.+ ..+|.+-|+..+=. |.+..++...+++..
T Consensus 89 AVi-EA~~--------srvpLIVLTADRP~EL~~~GAn--QaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~ 157 (566)
T COG1165 89 AVI-EANL--------SRVPLIVLTADRPPELRGCGAN--QAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAA 157 (566)
T ss_pred HHH-hhhh--------cCCceEEEeCCCCHHHhcCCCc--hhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 664 4555 57999999876322 122332 444 37888888876655 555555544444421
Q ss_pred -----hCCCCeEEee
Q 024237 196 -----RDPDPVVFLE 205 (270)
Q Consensus 196 -----~~~~P~~ir~ 205 (270)
...|||=|-.
T Consensus 158 ~~a~~~~~GpVHiN~ 172 (566)
T COG1165 158 QQARTPHAGPVHINV 172 (566)
T ss_pred HhccCCCCCceEecC
Confidence 2367887743
No 240
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.50 E-value=59 Score=31.59 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=30.0
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIV-GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~V 269 (270)
...||.|++.|... ..|++.++.|.+.|+++++
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~ 367 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEV 367 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEE
Confidence 35799999999987 8999999999999999987
No 241
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.37 E-value=59 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCCee
Q 024237 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 238 G~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~ 268 (270)
.++|+|++.| ..-+.+.+|.+.|++.|++.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~ 41 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFG 41 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeE
Confidence 4578888887 366788888888888888654
No 242
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=33.23 E-value=1.7e+02 Score=29.47 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=49.9
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec-ccccCCCCCCcccccCCCcccc---CCceEEeEeCCcEEEEEec
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN-ELLYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTITAFS 247 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~-~~~~~~~~~~~~~~~~~~~~~~---~Gk~~vl~~G~dvtIva~G 247 (270)
..|- -|+.|.+.+|...+++.|.+.+-|++.|-. .++.+...|...........+. +.+-..+.++.. +++-.|
T Consensus 37 g~P~-AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID~~~~-VvVePG 114 (564)
T PRK11183 37 GDAL-AVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLNNGKQ-VLALPG 114 (564)
T ss_pred CCCC-EEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEECCCCe-EEEeCC
Confidence 3443 689999999999999999999999988742 3433332221100000000111 223333334444 456689
Q ss_pred hhHHHHHHHHHH
Q 024237 248 KIVGLSLKAAEI 259 (270)
Q Consensus 248 ~~v~~al~Aa~~ 259 (270)
..+....++++.
T Consensus 115 Vtl~~LeeaLk~ 126 (564)
T PRK11183 115 TTLYQLEKALKP 126 (564)
T ss_pred CcHHHHHHHHHH
Confidence 988887776543
No 243
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=33.04 E-value=1.4e+02 Score=29.83 Aligned_cols=149 Identities=14% Similarity=0.186 Sum_probs=80.3
Q ss_pred HHHHHHHHhhc-C-CcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccc-hhHHHHHHHHHhhc-CCccEEEeehhh
Q 024237 43 LNSALDEEMSA-D-PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT-EAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (270)
Q Consensus 43 ~~~~L~~~~~~-d-~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIa-E~~~vg~AaGlA~~-G~~Pi~~~~~~~ 118 (270)
+++.|.+.+.+ + +.++.+-.|-. ..+++.+ ..+ |+ +--+|-+ |-|+.=.|=|.|.- |.--++.+|..-
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGDyN-----L~lLD~i-~~~-~~-lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVG 77 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGDYN-----LSLLDKI-YSV-PG-LRWVGNANELNAAYAADGYARLNGISALVTTFGVG 77 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCccc-----HHHHHHh-hcC-CC-ceeecccchhhhhhhhcchhhhcCceEEEEecccc
Confidence 45556555543 3 56666665542 2333333 334 33 3334544 66666666788875 666666665322
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec--CCCCCCCCC--CCc---chHHHHHccCCCc----EEEccCC--HH
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGVGA--QHS---HCYAAWYASVPGL----KVLSPYS--SE 185 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~--~G~~~~~G~--tH~---~~~~a~lr~iPn~----~V~~P~d--~~ 185 (270)
-.-|++-|--+ | .-++||+.+.. .-.....|. ||. ..++-++|.--++ ..+.|.+ +.
T Consensus 78 -ELSA~NGIAGS--Y-------AE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~ 147 (557)
T COG3961 78 -ELSALNGIAGS--Y-------AEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPR 147 (557)
T ss_pred -hhhhhcccchh--h-------hhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHH
Confidence 22344444322 2 25899999742 111112221 231 1223333333333 2334444 78
Q ss_pred HHHHHHHHhHhCCCCeEEeecccc
Q 024237 186 DARGLLKAAIRDPDPVVFLENELL 209 (270)
Q Consensus 186 e~~~~l~~a~~~~~P~~ir~~~~~ 209 (270)
|...+++.++...+|+||-.|...
T Consensus 148 eIDrvi~~~~~~~RPvYI~lP~dv 171 (557)
T COG3961 148 EIDRVIRTALKQRRPVYIGLPADV 171 (557)
T ss_pred HHHHHHHHHHHhcCCeEEEcchHH
Confidence 999999999999999999876543
No 244
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=32.91 E-value=4.1e+02 Score=26.40 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+..+- +=-..++.|.|.++.. -++++.+.-- .|.+.. ..| ..+.. .++|++++. .++.++-
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~-~eL-~Ta~~--------~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTN-QEL-AILNI--------YKVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccH-HHH-HHHHH--------hCCCeEEEEEeCCCchH
Confidence 778887642 2223455666666663 3566655422 333333 223 33443 478887764 3432210
Q ss_pred ---------CC--CC----CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 ---------VG--AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 ---------~G--~t----H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+ .. +...+..+-+++ |++-+.-.+++|+..+++. +..++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~-~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLEV-ITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHH-hcCCCCEEEE
Confidence 01 11 111223566666 8888888999999999974 5678899984
No 245
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=31.87 E-value=3.1e+02 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHhhcCCccEEEee
Q 024237 93 EAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 93 E~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
+..+-..++++|..|...|+.-.
T Consensus 69 ~~~~~~~iaa~a~aG~~VIvD~v 91 (174)
T PF07931_consen 69 YAAMHAAIAAMARAGNNVIVDDV 91 (174)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHHHHhCCCCEEEecC
Confidence 45555566666666666666543
No 246
>PRK11178 uridine phosphorylase; Provisional
Probab=31.21 E-value=1.4e+02 Score=26.48 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=43.9
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.++.++||++++.+.+ .+++.. .+..++ .+.+ +.-.-+|.+|+|+++|.....|--+
T Consensus 19 i~Ii~g~p~e~~~ia~-~l~~~~--~~~~~~----------------~~~~----~~G~~~g~~v~v~~~GiG~~~Aa~~ 75 (251)
T PRK11178 19 LAIVPGDPERVEKIAA-LMDNPV--FLASHR----------------EFTS----WRAELDGKPVIVCSTGIGGPSTSIA 75 (251)
T ss_pred EEEECCCHHHHHHHHH-Hhccch--heeecc----------------CeEE----EEEEEcCEEEEEEecCCCHHHHHHH
Confidence 6899999999998766 343311 111010 1111 1112278899999999988777777
Q ss_pred HHHHHhcCCCee
Q 024237 257 AEILAKEGISAE 268 (270)
Q Consensus 257 a~~L~~~Gi~~~ 268 (270)
+++|...|.+.=
T Consensus 76 ~~eLi~~g~~~i 87 (251)
T PRK11178 76 VEELAQLGVRTF 87 (251)
T ss_pred HHHHHHcCCCEE
Confidence 788877676543
No 247
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=30.99 E-value=34 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=20.7
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhcCCCeee
Q 024237 238 GKDVTITAFSKIV-GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v-~~al~Aa~~L~~~Gi~~~V 269 (270)
..+++||++|... ..--+..+.|++.||.+++
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~ 84 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEV 84 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEE
Confidence 4578888888643 2233444568888888775
No 248
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=30.75 E-value=3.5e+02 Score=30.99 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=31.6
Q ss_pred HHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 167 ~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+-++. |+.-....+++|+..+++.+...++|++|-.
T Consensus 849 ~~lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV 886 (1655)
T PLN02980 849 ENLCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVEV 886 (1655)
T ss_pred HHHHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEEE
Confidence 3555555 7888889999999999999999899999843
No 249
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=29.59 E-value=85 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCee
Q 024237 240 DVTITAFSKIVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 240 dvtIva~G~~v~~al~Aa~~L~~~Gi~~~ 268 (270)
...|++|...-..|+++|.+|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68899999999999999999999998764
No 250
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=29.28 E-value=3.2e+02 Score=27.36 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=76.5
Q ss_pred HHHHHHHHhhc-C-CcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccc-hhHHHHHHHHHhhc-CCccEEEeehhh
Q 024237 43 LNSALDEEMSA-D-PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT-EAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (270)
Q Consensus 43 ~~~~L~~~~~~-d-~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIa-E~~~vg~AaGlA~~-G~~Pi~~~~~~~ 118 (270)
+++.|-+.+.+ + +.++.+-.|.. ..++ ++.++. |+ +-.+|-+ |-|..=.|=|.|+. |.--++.+|..
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFN-----L~LL-D~l~~~-~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgV- 76 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFN-----LSLL-DKLYAV-PG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFGV- 76 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCccc-----HHHH-HHhhhc-CC-ceeecccchhhhhhhhcchhhhcCceEEEEEecc-
Confidence 56666665554 3 56777666642 2333 344455 44 6666765 66666666688886 65556655422
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCC---Cc----chHHHHHccCCCc--EEEccCC----HH
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ---HS----HCYAAWYASVPGL--KVLSPYS----SE 185 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~t---H~----~~~~a~lr~iPn~--~V~~P~d----~~ 185 (270)
=-.-|++-|-- +|. -++||+.+...-.+...+.. || ..+.-.+|.--++ ...+=-| ++
T Consensus 77 GeLSAlNGIAG--sYA-------E~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~ 147 (561)
T KOG1184|consen 77 GELSALNGIAG--AYA-------ENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPE 147 (561)
T ss_pred chhhhhcccch--hhh-------hcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHH
Confidence 22234444432 232 58999997421111112221 22 1222222222222 1222233 34
Q ss_pred HHHHHHHHhHhCCCCeEEeeccc
Q 024237 186 DARGLLKAAIRDPDPVVFLENEL 208 (270)
Q Consensus 186 e~~~~l~~a~~~~~P~~ir~~~~ 208 (270)
+...+++.++...+||||-.|..
T Consensus 148 ~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 148 QIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred HHHHHHHHHHHhcCCeEEEeecc
Confidence 55567777777899999987654
No 251
>PRK12754 transketolase; Reviewed
Probab=28.42 E-value=3.3e+02 Score=28.07 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCCc---chHHHHHccCCCcEEEccCCHHH---HHHHHHHh
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS---HCYAAWYASVPGLKVLSPYSSED---ARGLLKAA 194 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH~---~~~~a~lr~iPn~~V~~P~d~~e---~~~~l~~a 194 (270)
..+|.+.. ++. .++| ++++..+...+-+|+++. .....-+++. |+.++...|..| +..+++.+
T Consensus 162 ~~~EA~~~-A~~--------~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a 231 (663)
T PRK12754 162 ISHEVCSL-AGT--------LKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEA 231 (663)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHH
Confidence 46777743 444 5887 445444322223455542 2234678887 888765335554 44455555
Q ss_pred Hh-CCCCeEEeec
Q 024237 195 IR-DPDPVVFLEN 206 (270)
Q Consensus 195 ~~-~~~P~~ir~~ 206 (270)
.. .++|++|...
T Consensus 232 ~~~~~~Pt~I~~~ 244 (663)
T PRK12754 232 RAVTDKPSLLMCK 244 (663)
T ss_pred HhcCCCCEEEEEE
Confidence 54 4779999754
No 252
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=28.20 E-value=3.2e+02 Score=26.52 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=31.5
Q ss_pred CCCCEEEEecC-CCCCCCCCCC----cc-hHH--HHHccCCCcEEEccCCHHHHH----HHHHHhHhCCCCeEEee
Q 024237 142 ISVPIVFRGPN-GAAAGVGAQH----SH-CYA--AWYASVPGLKVLSPYSSEDAR----GLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 142 ~~~pvi~~~~~-G~~~~~G~tH----~~-~~~--a~lr~iPn~~V~~P~d~~e~~----~~l~~a~~~~~P~~ir~ 205 (270)
.++||+++..+ +. ..|.++ .. .+. +---.+|++.| .=.|..++. .+++.+.+.++|++|-.
T Consensus 250 ~~LPvIfVV~NN~y--aig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 250 WKLPIVFVVENNLW--AIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred hCCCEEEEEeCCCE--eecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 48999998754 32 112211 11 122 22235666654 233444444 44555555688999854
No 253
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=27.90 E-value=2.3e+02 Score=26.79 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec-ccccCCCCCCcccccCCCccccCCceE-E--eEeCCcEEEE
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN-ELLYGESFPVSAEVLDSSFCLPIGKAK-I--EREGKDVTIT 244 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~-~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v--l~~G~dvtIv 244 (270)
..+..|. .|+.|.+.+|+..+++.|.+++-|++.|-. .++.+...| .....+.+.+.. | +...+..+.+
T Consensus 27 ~~~~~p~-~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~------~~gvvl~l~~mn~i~~id~~~~~~~v 99 (459)
T COG0277 27 VYRGLPL-AVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVP------DGGVVLDLSRLNRILEIDPEDGTATV 99 (459)
T ss_pred hhcCCCC-EEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccC------CCcEEEEchhhcchhccCcCCCEEEE
Confidence 4556666 899999999999999999999999888743 222222211 101112222222 1 2334567777
Q ss_pred EechhHHHHHHHHH
Q 024237 245 AFSKIVGLSLKAAE 258 (270)
Q Consensus 245 a~G~~v~~al~Aa~ 258 (270)
-.|..+.+..++++
T Consensus 100 ~aGv~l~~l~~~l~ 113 (459)
T COG0277 100 QAGVTLEDLEKALA 113 (459)
T ss_pred cCCccHHHHHHHHH
Confidence 88888888777643
No 254
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.89 E-value=86 Score=27.19 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHHHhhc-CCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecc
Q 024237 36 QMMVREALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~-d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~G 90 (270)
....|++|-++|.+.+++ .+++|++.. +.. -+...|-++| +.|.+|.-
T Consensus 60 ~~~~r~~~d~~l~~~l~~~~~dlvvLAG----yMr--IL~~~fl~~~-~grIlNIH 108 (200)
T COG0299 60 EFPSREAFDRALVEALDEYGPDLVVLAG----YMR--ILGPEFLSRF-EGRILNIH 108 (200)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEcc----hHH--HcCHHHHHHh-hcceEecC
Confidence 344588888888887775 589999864 211 2357789999 99999963
No 255
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=27.86 E-value=3.8e+02 Score=24.98 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCCEEEEecC-CCCCCCCCCCc---ch-H--HHHHccCCCcEEEccCCHHHH----HHHHHHhHhCCCCeEEee
Q 024237 142 ISVPIVFRGPN-GAAAGVGAQHS---HC-Y--AAWYASVPGLKVLSPYSSEDA----RGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 142 ~~~pvi~~~~~-G~~~~~G~tH~---~~-~--~a~lr~iPn~~V~~P~d~~e~----~~~l~~a~~~~~P~~ir~ 205 (270)
.++|++++..+ +...+ .+++. .. + .+---.+|++.|=- .|..++ +.+++.+.+.++|++|-.
T Consensus 184 ~~LPvifvv~NN~~~i~-~~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 184 WKLPIIFVVENNQWAIG-MAHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred cCCCEEEEEEeCCeeee-cchhheeCCccHHHHHHhCCCCEEEEeC-CCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 48999998753 42111 11111 11 1 13333678877744 344433 345555556688999854
No 256
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.54 E-value=4.6e+02 Score=26.19 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHH--HHHHHHhhc-CCccEEE
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT--GIGVGAAYY-GLKPVVE 113 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~v--g~AaGlA~~-G~~Pi~~ 113 (270)
+.+-.++ ..+.+.+- +++.+++++ -++..++ ..-+....+|.|-+|.|---.-=| |+|.+.|.. -.+++++
T Consensus 380 LN~~~~~-~~vre~L~-~~d~ilVsE-Gantmdi---gr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~ 453 (571)
T KOG1185|consen 380 LNYYQVL-QTVRELLP-NDDTILVSE-GANTMDI---GRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVC 453 (571)
T ss_pred CcHHHHH-HHHHHhcC-CCCcEEEec-CCcchhh---hhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEE
Confidence 3343333 34455554 355555553 1222222 122344445999999886543322 222222222 3445555
Q ss_pred eehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec--CCCCCC--CCCC--------Ccc---------hHHHHHc
Q 024237 114 FMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAG--VGAQ--------HSH---------CYAAWYA 171 (270)
Q Consensus 114 ~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~--~G~~~~--~G~t--------H~~---------~~~a~lr 171 (270)
.+-- .|-.-++| + ..+++ .|+||+++.. +|.++. +|.+ |.. ..+-++.
T Consensus 454 veGDsaFGfSaME-~-ET~vR--------~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~k 523 (571)
T KOG1185|consen 454 VEGDSAFGFSAME-L-ETFVR--------YKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAK 523 (571)
T ss_pred EecCcccCcchhh-H-HHHHH--------hcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHH
Confidence 5422 22222222 1 22334 4899988753 465422 2221 100 0123444
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHhCC-CCeEEe
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIRDP-DPVVFL 204 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~~~-~P~~ir 204 (270)
++ |.+=+.-.+++|+...++++.+.. .|++|-
T Consensus 524 a~-G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 524 AF-GGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred Hc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 44 445555569999999999999875 899883
No 257
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=27.40 E-value=28 Score=27.40 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=24.3
Q ss_pred eEeCCcEEEEEechhH--HHHHHHHHHHHhcCCCeee
Q 024237 235 EREGKDVTITAFSKIV--GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 235 l~~G~dvtIva~G~~v--~~al~Aa~~L~~~Gi~~~V 269 (270)
+..+.++.||++|... ..--++.+.|++.||.+++
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~ 91 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLV 91 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEE
Confidence 4456789999999763 2233444578888988875
No 258
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=27.01 E-value=3.8e+02 Score=25.29 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCCEEEEecCCCCCCCCCC-Ccc----hHHHHHccCCCcEEEccCCHHHHHHHHHHhHh---CCCCeEEee
Q 024237 142 ISVPIVFRGPNGAAAGVGAQ-HSH----CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFLE 205 (270)
Q Consensus 142 ~~~pvi~~~~~G~~~~~G~t-H~~----~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~---~~~P~~ir~ 205 (270)
.++|++++..+... +.+.. ..+ .+-.-...+|++.| -=-|..++..+++.+.+ .++|++|-.
T Consensus 187 ~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 187 WDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred cCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 48999998764221 22221 111 11122245787766 44445555555555543 278999964
No 259
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=26.39 E-value=1.2e+02 Score=23.03 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCCCeeeC
Q 024237 250 VGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 250 v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
....-++.+.|++.|++.+++
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~ 38 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELH 38 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEec
Confidence 334444555566666666553
No 260
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.32 E-value=3.1e+02 Score=27.04 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=30.2
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+..| ..|+.|.+.+|+..+++.|-+.+-|++.|-
T Consensus 51 ~~~~~p-~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG 86 (499)
T PRK11230 51 AYRTRP-LLVVLPKQMEQVQALLAVCHRLRVPVVARG 86 (499)
T ss_pred ccCCCC-CEEEeeCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 345566 577889999999999999999888998874
No 261
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=26.00 E-value=2.7e+02 Score=29.39 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCEEEEecCC---CC-CC----CCCCCc--chH----HHHHccCCCcEEEccCCHHH
Q 024237 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG---AA-AG----VGAQHS--HCY----AAWYASVPGLKVLSPYSSED 186 (270)
Q Consensus 121 ~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G---~~-~~----~G~tH~--~~~----~a~lr~iPn~~V~~P~d~~e 186 (270)
.|-|+|+.. ++.. -+.|++++=.+. +. .+ .+..|. ..+ ..+..+.|++.|+-.+++.|
T Consensus 644 gRL~~Q~~~-m~~~-------Y~~PvLLIE~d~~~~f~l~~~~~~~~~~~~~~~~i~~~L~~L~l~fP~l~IiwS~s~~~ 715 (814)
T TIGR00596 644 GRLYNQCEK-MLRY-------YAYPVLLIEFDQNKSFSLEPRNDLSQEISSVNNDIQQKLALLTLHFPKLRIIWSSSPYA 715 (814)
T ss_pred chHHHHHHH-HHHh-------cCCcEEEEEecCCcccccccccccccccCccHHHHHHHHHHHHHhcCCceEEecCCHHH
Confidence 399999964 5543 378999984331 11 11 233343 222 25788899999999999999
Q ss_pred HHHHHHHhHhC
Q 024237 187 ARGLLKAAIRD 197 (270)
Q Consensus 187 ~~~~l~~a~~~ 197 (270)
+..++......
T Consensus 716 TA~i~~~Lk~~ 726 (814)
T TIGR00596 716 TAEIFEELKLG 726 (814)
T ss_pred HHHHHHHHHhc
Confidence 99999987764
No 262
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=25.17 E-value=99 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=25.2
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHhcCC
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGI 265 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi 265 (270)
++.|+.|+|.+.|.--.+|+++...|-+.+.
T Consensus 57 ~~~G~~i~v~~~G~De~~A~~~l~~~~~~~~ 87 (90)
T PRK10897 57 SAKGRQIEVEATGPQEEEALAAVIALFNSGF 87 (90)
T ss_pred CCCCCEEEEEEECcCHHHHHHHHHHHHHhcc
Confidence 4578999999999999999988777755443
No 263
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.74 E-value=1.1e+02 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=17.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 241 VTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 241 vtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+.+++.|+.-..++-+|..|...|+.++|
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 34555566666666666666666666554
No 264
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=24.67 E-value=6.9e+02 Score=24.67 Aligned_cols=142 Identities=10% Similarity=0.089 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhc-CCccEEEeehh-h
Q 024237 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTF-N 118 (270)
Q Consensus 43 ~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~-G~~Pi~~~~~~-~ 118 (270)
+-+.|.+.+.++.+.+ +..|.+.. .+.. ..+ . |.+|+..+- +=-..+..|.|.++. +.++++ +.-- .
T Consensus 361 ~~~~l~~~l~~~~~~i-i~~D~G~~--~~~~-~~~---~-~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i~GDG~ 431 (535)
T TIGR03394 361 IARAVNDRFARHGQMP-LAADIGDC--LFTA-MDM---D-DAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-LVGDGA 431 (535)
T ss_pred HHHHHHHHhCCCCCEE-EEEccCHH--HHHH-Hhc---C-CCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-EEeChH
Confidence 5566777776554433 33354431 1111 112 2 557776532 111223444455555 455544 4322 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-C---CC-C----CCcchHHHHHccCCCcEEEccCCHHHHH
Q 024237 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-G---VG-A----QHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (270)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~---~G-~----tH~~~~~a~lr~iPn~~V~~P~d~~e~~ 188 (270)
|.+ ....|- .+.+ .++|++++.- ++.++ - .. . .+...+.++-+++ |..-..-.+++|+.
T Consensus 432 f~m-~~~EL~-Ta~r--------~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~ 500 (535)
T TIGR03394 432 FQM-TGWELG-NCRR--------LGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAELA 500 (535)
T ss_pred HHh-HHHHHH-HHHH--------cCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHHH
Confidence 333 233443 3444 5788887643 43221 0 00 0 0111223455554 66667778899999
Q ss_pred HHHHHhHhCCC-CeEEe
Q 024237 189 GLLKAAIRDPD-PVVFL 204 (270)
Q Consensus 189 ~~l~~a~~~~~-P~~ir 204 (270)
..++.+++.++ |.+|-
T Consensus 501 ~al~~a~~~~~~p~lIe 517 (535)
T TIGR03394 501 AALDKAFATRGRFQLIE 517 (535)
T ss_pred HHHHHHHhcCCCeEEEE
Confidence 99999998655 66663
No 265
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.59 E-value=82 Score=22.20 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhcCCCeee
Q 024237 249 IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~~~V 269 (270)
..+.|+++-+.|++.|++++|
T Consensus 10 st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEE
Confidence 467899999999999999876
No 266
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=24.52 E-value=86 Score=28.04 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEeCCcEEEEEech-----hHHHHHHHHHHHHhcCCCeee
Q 024237 235 EREGKDVTITAFSK-----IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 235 l~~G~dvtIva~G~-----~v~~al~Aa~~L~~~Gi~~~V 269 (270)
-++|.+|++|+.|. |...++|++++..-.+++++|
T Consensus 69 A~~G~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veV 108 (249)
T COG1010 69 AAEGRDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEV 108 (249)
T ss_pred HhcCCeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEE
Confidence 35799999999994 444444544432212466665
No 267
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=24.15 E-value=3.1e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=23.6
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCee
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~ 268 (270)
..+-|++.|. -++.|.||+..++..|+++.
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~ 148 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQ 148 (254)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHHhCceEE
Confidence 3566888884 78889999998888888764
No 268
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.03 E-value=1e+02 Score=23.03 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCCee
Q 024237 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 238 G~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~ 268 (270)
.++|+|++.| +.-+.|-+|.+.|.+.||+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~ 45 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFA 45 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE
Confidence 3568888777 456777788888888887654
No 269
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=23.91 E-value=2.8e+02 Score=26.80 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=49.1
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceE-E--eEeCCcEEEEEech
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-I--EREGKDVTITAFSK 248 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~-v--l~~G~dvtIva~G~ 248 (270)
..| -.|+.|.+.+|+..+++.+-+.+.|+.++-...-+. .....++..+.+.+.. + +.+.+..+.+..|.
T Consensus 13 ~~p-~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s------~~~~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~ 85 (438)
T TIGR01678 13 ASP-EVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPS------DIACTDGFLIHLDKMNKVLQFDKEKKQITVEAGI 85 (438)
T ss_pred CCC-CEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCC------CCccCCeEEEEhhhcCCceEEcCCCCEEEEcCCC
Confidence 345 367999999999999999998888988863311010 1111111222222221 2 22233455667788
Q ss_pred hHHHHHHHHHHHHhcCCCe
Q 024237 249 IVGLSLKAAEILAKEGISA 267 (270)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~~ 267 (270)
.+.+..+ .|.++|...
T Consensus 86 ~l~~L~~---~L~~~Gl~l 101 (438)
T TIGR01678 86 RLYQLHE---QLDEHGYSM 101 (438)
T ss_pred CHHHHHH---HHHHcCCEe
Confidence 8776554 466767543
No 270
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=23.74 E-value=1.6e+02 Score=29.77 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchH--------HHHHccCCCcEEEccC
Q 024237 123 AIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY--------AAWYASVPGLKVLSPY 182 (270)
Q Consensus 123 a~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~--------~a~lr~iPn~~V~~P~ 182 (270)
..|||+.-+...+ .+...|+++-..+|.. |.|||-.| .+=+|+.+|+.++.=+
T Consensus 160 tIeqI~svi~IAk----a~P~~pIilq~egGra---GGHHSweDld~llL~tYs~lR~~~NIvl~vGg 220 (717)
T COG4981 160 TIEQIRSVIRIAK----ANPTFPIILQWEGGRA---GGHHSWEDLDDLLLATYSELRSRDNIVLCVGG 220 (717)
T ss_pred cHHHHHHHHHHHh----cCCCCceEEEEecCcc---CCccchhhcccHHHHHHHHHhcCCCEEEEecC
Confidence 3567764433221 1467899987665543 56786433 1558999999998754
No 271
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=23.61 E-value=3.1e+02 Score=23.91 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=42.7
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||..++.+-++.+++ +-.+..++. +.+--| .-+|.+++++++|.....|--+
T Consensus 12 ~vi~~Gdp~r~~~ia~~~~~~--~~~~~~~r~----------------~~~~~G----~~~g~~v~v~~~G~G~~~aai~ 69 (232)
T TIGR00107 12 VVLMPGDPLRAKYIAETFLED--AKEVNEVRG----------------MLGFTG----TYKGKKISVMGHGMGIPSISIY 69 (232)
T ss_pred eEEeCCCHHHHHHHHHHHhcC--cEeeeeecc----------------eEEEEE----EECCEEEEEEeCCCCHhHHHHH
Confidence 688999999987766555543 333432221 111112 2258899999999988776666
Q ss_pred HHHHHh-cCCCe
Q 024237 257 AEILAK-EGISA 267 (270)
Q Consensus 257 a~~L~~-~Gi~~ 267 (270)
.++|-. -|.+.
T Consensus 70 ~~eli~~~~~~~ 81 (232)
T TIGR00107 70 VYELIKFYEVKT 81 (232)
T ss_pred HHHHHHHcCCCE
Confidence 666654 46653
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.15 E-value=95 Score=21.82 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=17.1
Q ss_pred CCcEEEEEechhHH------HHHHHHHHHHhcCCCee
Q 024237 238 GKDVTITAFSKIVG------LSLKAAEILAKEGISAE 268 (270)
Q Consensus 238 G~dvtIva~G~~v~------~al~Aa~~L~~~Gi~~~ 268 (270)
|.++|||..+.... .+..+.+.|++.||++.
T Consensus 22 g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 22 GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 56677776665332 33334556666666543
No 273
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.72 E-value=2.7e+02 Score=27.51 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=27.0
Q ss_pred eCCcEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.|+.|+|.-+|+ ....+.+..+.|.+.|.+++|
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k~G~~V~V 102 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRC 102 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEE
Confidence 477888888886 557999999999999988776
No 274
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=22.51 E-value=2.7e+02 Score=26.47 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=25.2
Q ss_pred EEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 178 VLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
|+.|.+.+|+..+++.|-+++-|++++-
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G 28 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRG 28 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 5789999999999999999888999874
No 275
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=22.23 E-value=1.4e+02 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=24.1
Q ss_pred CceEEeEeCCcEEEEEechhHHHHHHHHHHHHhc
Q 024237 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE 263 (270)
Q Consensus 230 Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~ 263 (270)
|+|.|.++|..-+. .+-..=.+|+++|..+.++
T Consensus 9 ~~W~v~~eg~~ra~-~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 9 GGWAVKKEGAKRAS-KTFDTKAEAIEAARELAKN 41 (62)
T ss_pred CCceEEeCCCcccc-cccCcHHHHHHHHHHHHHh
Confidence 57889999876553 3445667888888888765
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=22.20 E-value=90 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=16.2
Q ss_pred eCCcEEEEEechhH-H-----HH-HHHHHHHHhcCCCee
Q 024237 237 EGKDVTITAFSKIV-G-----LS-LKAAEILAKEGISAE 268 (270)
Q Consensus 237 ~G~dvtIva~G~~v-~-----~a-l~Aa~~L~~~Gi~~~ 268 (270)
.|.+||||..+..+ . +. -...+.|++.||++.
T Consensus 166 ~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 166 RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 46677777665432 1 11 123444556676654
No 277
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.06 E-value=1.2e+02 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=17.0
Q ss_pred EEEechhHH--H--HHHHHHHHHhcCCCeee
Q 024237 243 ITAFSKIVG--L--SLKAAEILAKEGISAEV 269 (270)
Q Consensus 243 Iva~G~~v~--~--al~Aa~~L~~~Gi~~~V 269 (270)
+++||+.+. . +.+.-+.|+++|++++|
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v 36 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVEL 36 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEE
Confidence 455555443 2 34555777888998876
No 278
>PRK13984 putative oxidoreductase; Provisional
Probab=21.96 E-value=93 Score=31.15 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=26.0
Q ss_pred EeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 236 ~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+.+++|+||+.| .-.+.||..|.+.|+++.|
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~v 311 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTV 311 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEE
Confidence 468899999988 5678889999999988875
No 279
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=21.50 E-value=1.3e+02 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.2
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHhc
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAKE 263 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~~ 263 (270)
++.|..++|.+.|.--.+|+++-..|-+.
T Consensus 55 ~~~G~~i~i~a~G~de~~Al~aL~~li~~ 83 (88)
T COG1925 55 AKKGDEIELSAEGEDEEEALEALSELIES 83 (88)
T ss_pred cCCCCEEEEEEeCccHHHHHHHHHHHHHh
Confidence 35689999999999999999987776544
No 280
>COG5659 FOG: Transposase [DNA replication, recombination, and repair]
Probab=21.47 E-value=4e+02 Score=25.45 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHH-HHHHHhhcCCccEEEe
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTG-IGVGAAYYGLKPVVEF 114 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg-~AaGlA~~G~~Pi~~~ 114 (270)
..+.++-+.+.+.++++.++.+.+++. .....--+.+..+.++| .-+.|+.+.+.++ ++.++.-.|..|+.+.
T Consensus 74 d~~l~~r~rd~v~~~l~~~~a~~iide--tg~~kkgk~s~~v~rqy----~G~Lgkidn~~v~v~~~~~~~~~~~~i~~~ 147 (385)
T COG5659 74 DEALRSRVRDIVLELLEGEEAVWIIDE--TGFPKKGKHSDGVARQY----IGNLGKIDNCQVAVSLYGITEGGTLPIASQ 147 (385)
T ss_pred chhHHHHHHHHhhhhcCccceeEeccc--cCCCcccccccchhhhh----hhhhhhhhhhHHHHHHhhhhcceeEeechh
Confidence 344777788888888888886666664 22222112233445555 5689999999999 6666666677887654
Q ss_pred ehh---------------hHHHHHHHHHHHHHhh
Q 024237 115 MTF---------------NFSMQAIDHIINSAAK 133 (270)
Q Consensus 115 ~~~---------------~f~~ra~dqi~~~~a~ 133 (270)
.+- .+-.-+.++|+--++.
T Consensus 148 ~~kp~~~l~e~~k~~~f~tkP~ia~~~ike~iaa 181 (385)
T COG5659 148 LYKPEEWLDEGDKRAKFATKPEIAVEIIKEAIAA 181 (385)
T ss_pred ccCChhhccccchhhhhccCchHHHHHHHHHHHh
Confidence 332 3344688999987764
No 281
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.13 E-value=1.2e+02 Score=27.80 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.1
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.++.|.+.+|+..+++++-+.+-|++++-
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v~G 67 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTFLG 67 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 67899999999999999998888999873
No 282
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=21.10 E-value=64 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.9
Q ss_pred EEEechhHHHHHHHHHHHHhcCCC
Q 024237 243 ITAFSKIVGLSLKAAEILAKEGIS 266 (270)
Q Consensus 243 Iva~G~~v~~al~Aa~~L~~~Gi~ 266 (270)
|++||+++.+ +++.|++.|++
T Consensus 193 V~TTGaTl~~---~~~~L~~~Ga~ 213 (225)
T COG1040 193 VYTTGATLKE---AAKLLREAGAK 213 (225)
T ss_pred ccccHHHHHH---HHHHHHHcCCc
Confidence 3599999888 45568888863
No 283
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=20.84 E-value=1.1e+03 Score=25.45 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCC-CEEEEecCCCCCCCCCCC-----cchHHHHHccCCCcEEEcc
Q 024237 122 QAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQH-----SHCYAAWYASVPGLKVLSP 181 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~-pvi~~~~~G~~~~~G~tH-----~~~~~a~lr~iPn~~V~~P 181 (270)
-.+|.+.. ++. .++ +++++..+....-+|++. .+.+++.|++. |++|+.=
T Consensus 234 ~~wEA~~~-Aa~--------~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~-GW~vi~v 289 (889)
T TIGR03186 234 ESIGALSL-AAR--------ERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGA-GWNVIKV 289 (889)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhC-CCEEEEE
Confidence 56677753 444 356 555554433333455554 24557899997 9988864
No 284
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=20.75 E-value=1.1e+02 Score=25.13 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=20.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.|++|+||+.|.. |.+++..|.+.|.++++
T Consensus 166 ~~k~V~VVG~G~S---A~d~a~~l~~~g~~V~~ 195 (203)
T PF13738_consen 166 KGKRVVVVGGGNS---AVDIAYALAKAGKSVTL 195 (203)
T ss_dssp TTSEEEEE--SHH---HHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEcChHH---HHHHHHHHHhhCCEEEE
Confidence 3689999999975 45566678888866654
No 285
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.62 E-value=4.6e+02 Score=23.75 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=25.7
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.++.|.+.+|+..+++++-+.+-|+.++-
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~G 61 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLG 61 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 56889999999999999988888999873
No 286
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=20.54 E-value=1.1e+02 Score=29.34 Aligned_cols=30 Identities=33% Similarity=0.318 Sum_probs=24.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.+++|+||+.| +-.+.||..|.+.|.++.|
T Consensus 132 ~~~~V~IIG~G---~aGl~aA~~l~~~G~~V~v 161 (449)
T TIGR01316 132 THKKVAVIGAG---PAGLACASELAKAGHSVTV 161 (449)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEE
Confidence 46789999999 5567788889888988876
No 287
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.42 E-value=1.1e+02 Score=29.62 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=24.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.|++|+||+.| +-.+.||..|.+.|.++.|
T Consensus 142 ~~~~VvIIGaG---pAGl~aA~~l~~~G~~V~v 171 (471)
T PRK12810 142 TGKKVAVVGSG---PAGLAAADQLARAGHKVTV 171 (471)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHhCCCcEEE
Confidence 57799999999 4457778888888988765
Done!