Query 024237
Match_columns 270
No_of_seqs 131 out of 1053
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.2E-53 4E-58 395.4 21.3 236 34-269 12-247 (341)
2 1w85_B Pyruvate dehydrogenase 100.0 1.1E-52 3.6E-57 386.4 23.3 231 36-269 2-232 (324)
3 1umd_B E1-beta, 2-OXO acid deh 100.0 9.6E-53 3.3E-57 386.6 22.9 232 35-269 2-233 (324)
4 1ik6_A Pyruvate dehydrogenase; 100.0 2.9E-52 9.9E-57 389.7 20.9 230 34-269 48-277 (369)
5 2bfd_B 2-oxoisovalerate dehydr 100.0 2.7E-51 9.2E-56 379.7 22.6 243 20-269 6-251 (342)
6 1qs0_B 2-oxoisovalerate dehydr 100.0 1.2E-49 4.2E-54 367.9 21.0 232 34-269 2-247 (338)
7 3l84_A Transketolase; TKT, str 100.0 3.5E-43 1.2E-47 347.7 22.5 213 35-269 336-556 (632)
8 3m49_A Transketolase; alpha-be 100.0 1.7E-43 5.9E-48 352.6 17.9 223 28-269 371-607 (690)
9 3kom_A Transketolase; rossmann 100.0 9.2E-43 3.1E-47 346.5 23.0 217 34-269 352-580 (663)
10 3rim_A Transketolase, TK; TPP, 100.0 6.6E-43 2.3E-47 348.5 19.9 225 27-269 365-615 (700)
11 3mos_A Transketolase, TK; thia 100.0 1.3E-42 4.4E-47 343.4 21.5 221 26-269 303-529 (616)
12 3uk1_A Transketolase; structur 100.0 6.8E-43 2.3E-47 349.2 19.1 217 34-269 392-628 (711)
13 1gpu_A Transketolase; transfer 100.0 4.7E-42 1.6E-46 342.8 21.5 221 28-269 347-585 (680)
14 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 6.2E-42 2.1E-46 339.5 22.1 209 36-269 321-532 (629)
15 2r8o_A Transketolase 1, TK 1; 100.0 1.9E-41 6.6E-46 338.0 20.2 217 34-269 352-580 (669)
16 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.6E-41 1.2E-45 333.6 21.0 210 35-269 317-529 (621)
17 1itz_A Transketolase; calvin c 100.0 7.7E-41 2.6E-45 333.9 22.1 222 28-269 357-593 (675)
18 2e6k_A Transketolase; structur 100.0 1.2E-40 4.2E-45 331.3 18.8 215 35-269 347-572 (651)
19 1r9j_A Transketolase; domains, 100.0 2.5E-40 8.5E-45 330.0 19.5 214 35-269 350-576 (673)
20 2qtc_A Pyruvate dehydrogenase 100.0 7E-36 2.4E-40 304.1 19.7 222 35-269 490-755 (886)
21 2yic_A 2-oxoglutarate decarbox 100.0 4.8E-37 1.6E-41 312.1 10.4 213 48-269 528-778 (868)
22 2jgd_A 2-oxoglutarate dehydrog 100.0 6.2E-36 2.1E-40 305.6 17.0 224 36-269 590-842 (933)
23 2xt6_A 2-oxoglutarate decarbox 100.0 1.2E-35 4.3E-40 308.2 15.1 215 46-269 771-1023(1113)
24 3ahc_A Phosphoketolase, xylulo 100.0 8.1E-32 2.8E-36 270.9 21.8 217 36-269 428-691 (845)
25 1yd7_A 2-keto acid:ferredoxin 99.7 4.6E-16 1.6E-20 146.1 11.7 215 36-269 22-322 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.2 3E-10 1E-14 119.6 18.2 177 80-269 50-298 (1231)
27 3ju3_A Probable 2-oxoacid ferr 97.5 0.00012 4.1E-09 56.9 5.0 33 237-269 12-44 (118)
28 2nxw_A Phenyl-3-pyruvate decar 92.9 2.8 9.6E-05 40.2 15.5 158 35-211 19-189 (565)
29 1v5e_A Pyruvate oxidase; oxido 92.1 0.44 1.5E-05 46.2 8.5 155 36-209 3-165 (590)
30 2uz1_A Benzaldehyde lyase; thi 91.8 3.2 0.00011 39.7 14.3 154 35-208 2-164 (563)
31 1t9b_A Acetolactate synthase, 91.6 1.3 4.3E-05 43.9 11.4 150 41-204 464-632 (677)
32 1ybh_A Acetolactate synthase, 90.2 1.4 4.8E-05 42.5 10.0 152 37-208 12-172 (590)
33 4feg_A Pyruvate oxidase; carba 90.0 5.2 0.00018 38.6 14.0 156 35-208 9-171 (603)
34 2pan_A Glyoxylate carboligase; 89.7 5.5 0.00019 38.5 13.8 154 36-208 26-188 (616)
35 3hww_A 2-succinyl-5-enolpyruvy 89.3 4 0.00014 39.0 12.5 148 43-207 10-170 (556)
36 2wvg_A PDC, pyruvate decarboxy 89.2 8.9 0.0003 36.6 14.8 152 37-208 3-169 (568)
37 1ozh_A ALS, acetolactate synth 88.9 1.9 6.4E-05 41.4 9.8 153 37-209 11-171 (566)
38 2pgn_A Cyclohexane-1,2-dione h 88.9 5.7 0.00019 38.2 13.2 154 36-208 3-165 (589)
39 2iht_A Carboxyethylarginine sy 88.3 4.2 0.00014 38.9 11.8 152 37-209 12-172 (573)
40 1q6z_A BFD, BFDC, benzoylforma 88.1 1.8 6E-05 41.1 8.9 110 89-208 43-161 (528)
41 2c31_A Oxalyl-COA decarboxylas 88.0 4.7 0.00016 38.6 11.9 155 35-209 8-172 (568)
42 2q28_A Oxalyl-COA decarboxylas 88.0 10 0.00035 36.1 14.3 155 35-209 6-170 (564)
43 1t9b_A Acetolactate synthase, 87.2 2.5 8.5E-05 41.7 9.6 114 85-209 122-243 (677)
44 3lq1_A 2-succinyl-5-enolpyruvy 86.7 8.2 0.00028 37.0 12.8 113 85-207 51-177 (578)
45 3eya_A Pyruvate dehydrogenase 86.5 5.4 0.00019 38.0 11.4 151 38-208 4-162 (549)
46 2vk8_A Pyruvate decarboxylase 85.4 5.7 0.00019 37.9 10.9 153 36-209 3-171 (563)
47 2vbi_A Pyruvate decarboxylase; 85.1 4.3 0.00015 38.8 9.9 152 37-208 3-169 (566)
48 3uk1_A Transketolase; structur 82.2 3.1 0.00011 41.4 7.7 106 89-206 154-284 (711)
49 3m49_A Transketolase; alpha-be 81.8 6.9 0.00024 38.8 10.0 101 96-206 145-270 (690)
50 2o1s_A 1-deoxy-D-xylulose-5-ph 81.3 5.6 0.00019 38.7 9.1 31 175-205 247-280 (621)
51 1q6z_A BFD, BFDC, benzoylforma 81.0 3.6 0.00012 39.0 7.4 111 83-204 392-520 (528)
52 2x7j_A 2-succinyl-5-enolpyruvy 80.1 4.9 0.00017 38.8 8.2 113 85-208 71-198 (604)
53 3eya_A Pyruvate dehydrogenase 79.2 6.7 0.00023 37.3 8.8 111 83-204 396-524 (549)
54 3hww_A 2-succinyl-5-enolpyruvy 78.8 5.9 0.0002 37.8 8.3 97 97-204 422-534 (556)
55 1ybh_A Acetolactate synthase, 78.0 7.1 0.00024 37.5 8.6 111 83-204 416-553 (590)
56 3l84_A Transketolase; TKT, str 77.7 6.8 0.00023 38.4 8.4 99 96-205 119-238 (632)
57 2o1x_A 1-deoxy-D-xylulose-5-ph 77.5 6.8 0.00023 38.2 8.3 26 180-205 260-285 (629)
58 1ovm_A Indole-3-pyruvate decar 76.4 12 0.0004 35.5 9.5 154 37-209 5-171 (552)
59 2c31_A Oxalyl-COA decarboxylas 75.1 10 0.00035 36.1 8.8 111 83-204 416-542 (568)
60 3kom_A Transketolase; rossmann 75.0 9.6 0.00033 37.5 8.6 108 88-206 114-246 (663)
61 1ozh_A ALS, acetolactate synth 74.2 10 0.00035 36.2 8.6 111 83-204 410-538 (566)
62 2e6k_A Transketolase; structur 74.0 15 0.0005 36.0 9.7 87 109-205 151-246 (651)
63 2vbf_A Branched-chain alpha-ke 72.1 7.8 0.00027 37.0 7.1 151 37-208 25-190 (570)
64 4feg_A Pyruvate oxidase; carba 71.7 13 0.00046 35.7 8.7 112 83-204 410-541 (603)
65 1v5e_A Pyruvate oxidase; oxido 71.2 13 0.00046 35.6 8.6 111 83-204 403-534 (590)
66 1r9j_A Transketolase; domains, 70.1 27 0.00093 34.3 10.6 87 110-206 150-247 (673)
67 3lq1_A 2-succinyl-5-enolpyruvy 68.7 17 0.00057 34.8 8.6 97 96-204 441-555 (578)
68 1itz_A Transketolase; calvin c 68.3 23 0.0008 34.8 9.7 100 96-205 132-257 (675)
69 2pan_A Glyoxylate carboligase; 67.4 32 0.0011 33.1 10.4 111 83-204 432-575 (616)
70 2x7j_A 2-succinyl-5-enolpyruvy 67.1 6.3 0.00022 38.0 5.3 99 95-204 459-575 (604)
71 2uz1_A Benzaldehyde lyase; thi 66.4 23 0.0008 33.6 9.1 110 83-204 409-541 (563)
72 3jx9_A Putative phosphoheptose 65.7 8.6 0.00029 31.2 5.0 80 185-267 25-107 (170)
73 2iht_A Carboxyethylarginine sy 63.1 27 0.00091 33.3 8.8 111 83-204 426-556 (573)
74 1ovm_A Indole-3-pyruvate decar 63.0 17 0.00057 34.5 7.3 111 83-204 398-527 (552)
75 2q28_A Oxalyl-COA decarboxylas 60.6 22 0.00076 33.7 7.7 111 83-204 411-539 (564)
76 3rim_A Transketolase, TK; TPP, 58.0 20 0.00069 35.5 7.1 75 122-206 184-266 (700)
77 3mos_A Transketolase, TK; thia 56.5 26 0.00088 34.1 7.5 97 96-205 126-238 (616)
78 2vbi_A Pyruvate decarboxylase; 56.0 19 0.00063 34.3 6.3 111 83-204 399-528 (566)
79 2wvg_A PDC, pyruvate decarboxy 53.0 26 0.0009 33.2 6.8 111 83-204 403-536 (568)
80 1w85_A Pyruvate dehydrogenase 49.3 47 0.0016 30.0 7.6 100 95-205 146-263 (368)
81 1gpu_A Transketolase; transfer 48.8 71 0.0024 31.3 9.3 86 110-205 150-246 (680)
82 2r8o_A Transketolase 1, TK 1; 47.7 61 0.0021 31.7 8.6 86 110-205 148-243 (669)
83 2pgn_A Cyclohexane-1,2-dione h 45.7 12 0.00042 35.8 3.2 112 83-205 414-543 (589)
84 2nxw_A Phenyl-3-pyruvate decar 44.3 41 0.0014 31.9 6.6 144 41-203 377-536 (565)
85 3lyu_A Putative hydrogenase; t 43.6 23 0.00077 27.2 3.9 32 238-269 18-49 (142)
86 2vbf_A Branched-chain alpha-ke 42.2 80 0.0027 29.8 8.3 111 83-204 415-546 (570)
87 2qas_A SSPB, hypothetical prot 41.9 9.3 0.00032 30.6 1.4 75 35-115 20-106 (157)
88 2bfd_A 2-oxoisovalerate dehydr 39.7 63 0.0021 29.5 6.9 99 97-205 168-283 (400)
89 2nys_A AGR_C_3712P; SSPB, stri 39.6 12 0.00041 30.5 1.7 75 35-115 12-98 (176)
90 3iab_B Ribonucleases P/MRP pro 38.1 40 0.0014 26.4 4.5 31 239-269 61-92 (140)
91 3hh1_A Tetrapyrrole methylase 37.4 13 0.00043 27.8 1.4 34 236-269 77-113 (117)
92 2ab1_A Hypothetical protein; H 37.1 10 0.00035 28.9 0.9 35 235-269 58-94 (122)
93 1qs0_A 2-oxoisovalerate dehydr 37.0 1.2E+02 0.004 27.8 8.2 33 172-205 267-303 (407)
94 3le1_A Phosphotransferase syst 33.3 45 0.0015 23.6 3.8 31 235-265 55-85 (88)
95 2fi9_A Outer membrane protein; 33.2 12 0.00042 28.7 0.8 32 238-269 68-100 (128)
96 1umd_A E1-alpha, 2-OXO acid de 31.6 1E+02 0.0034 27.6 6.8 106 88-205 142-265 (367)
97 2fvt_A Conserved hypothetical 30.9 14 0.00047 28.8 0.7 32 238-269 67-99 (135)
98 2vk8_A Pyruvate decarboxylase 29.9 43 0.0015 31.6 4.2 111 83-204 403-537 (563)
99 2gm2_A Conserved hypothetical 29.7 14 0.00046 28.7 0.5 35 235-269 61-96 (132)
100 2ozl_A PDHE1-A type I, pyruvat 29.6 1.8E+02 0.006 26.1 8.1 33 172-205 223-259 (365)
101 3bje_A Nucleoside phosphorylas 29.3 52 0.0018 29.6 4.4 66 177-263 45-110 (349)
102 3ulk_A Ketol-acid reductoisome 28.8 31 0.0011 32.6 2.8 29 237-269 36-65 (491)
103 3lrx_A Putative hydrogenase; a 28.7 47 0.0016 25.8 3.6 32 237-268 22-53 (158)
104 3lc0_A Histidyl-tRNA synthetas 28.5 48 0.0017 30.8 4.2 32 239-270 362-394 (456)
105 3cpk_A Uncharacterized protein 25.9 21 0.00073 28.3 1.0 32 238-269 88-120 (150)
106 3u40_A Pnpase, purine nucleosi 25.2 1.3E+02 0.0046 25.0 6.1 69 177-267 24-93 (242)
107 1ptf_A Histidine-containing ph 24.5 79 0.0027 22.2 3.8 30 235-264 55-85 (88)
108 3phc_A Purine nucleoside phosp 23.6 1.1E+02 0.0039 26.2 5.4 68 177-267 19-86 (275)
109 1nh9_A MJA10B, DNA-binding pro 23.5 78 0.0027 22.5 3.6 27 237-263 25-51 (87)
110 2c42_A Pyruvate-ferredoxin oxi 23.4 4E+02 0.014 28.1 10.3 37 168-204 1026-1065(1231)
111 1pch_A Phosphocarrier protein; 23.4 67 0.0023 22.7 3.3 27 235-261 54-80 (88)
112 1sph_A Histidine-containing ph 23.4 82 0.0028 22.2 3.7 30 235-264 55-85 (88)
113 2ibo_A Hypothetical protein SP 23.0 1E+02 0.0034 22.7 4.2 31 240-270 6-39 (104)
114 1vk8_A Hypothetical protein TM 22.7 1.1E+02 0.0039 22.5 4.5 31 240-270 19-52 (106)
115 1hsk_A UDP-N-acetylenolpyruvoy 22.6 72 0.0025 28.1 4.0 29 177-205 51-79 (326)
116 1kkl_H Phosphocarrier protein 22.5 76 0.0026 23.1 3.4 68 184-265 28-98 (100)
117 3pm9_A Putative oxidoreductase 22.5 2.4E+02 0.0083 26.1 7.8 85 171-265 49-138 (476)
118 4e51_A Histidine--tRNA ligase; 22.2 92 0.0031 28.9 4.8 32 239-270 355-387 (467)
119 3qpb_A Uridine phosphorylase; 22.1 55 0.0019 28.3 3.1 68 177-267 47-114 (282)
120 1qe0_A Histidyl-tRNA synthetas 21.8 84 0.0029 28.3 4.4 31 239-269 330-361 (420)
121 1y51_A Phosphocarrier protein 21.6 83 0.0028 22.1 3.4 28 235-262 55-82 (88)
122 1ka5_A Phosphocarrier protein 21.0 77 0.0026 22.3 3.2 31 235-265 55-86 (88)
123 3tx1_A UDP-N-acetylenolpyruvoy 20.9 81 0.0028 27.9 4.0 29 177-205 57-85 (322)
124 3mb8_A Purine nucleoside phosp 20.9 1.4E+02 0.0048 25.7 5.4 68 177-267 23-90 (279)
125 3tla_A MCCF; serine protease, 20.8 56 0.0019 29.6 2.9 36 234-269 39-79 (371)
126 3ipz_A Monothiol glutaredoxin- 20.6 81 0.0028 22.7 3.3 30 239-268 18-51 (109)
127 4g85_A Histidine-tRNA ligase, 20.4 85 0.0029 29.4 4.2 31 239-269 420-451 (517)
128 2lnd_A De novo designed protei 20.2 1.1E+02 0.0038 21.7 3.7 38 169-206 22-59 (112)
129 4bby_A Alkyldihydroxyacetoneph 20.2 90 0.0031 30.3 4.5 92 169-265 201-296 (658)
130 3ccd_A Phosphocarrier protein 20.0 83 0.0028 22.0 3.1 27 235-261 55-81 (85)
131 1wx0_A Transaldolase; structur 20.0 46 0.0016 28.0 2.0 20 250-269 96-115 (223)
No 1
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.2e-53 Score=395.40 Aligned_cols=236 Identities=61% Similarity=1.043 Sum_probs=213.7
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
..+++++++++++|.+++++|++|+++++|++.++++|..+++|+++|||+||+|+||+|++|+++|+|+|++|++||++
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~ 91 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE 91 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence 35689999999999999999999999999998767777777899999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+++++|++|++|||++++|+++||+||++++||+++.++|..+++|+||||++|++|+++|||+|++|+|++|++.++++
T Consensus 92 ~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 92 FMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp CSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 76688999999999999999999999999999999988775566999999888899999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+|||++|.+|+.+.+..+.++++++.+++|+++++++|.|++||++|+++..|++|+++|+++|++++|
T Consensus 172 a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~v 247 (341)
T 2ozl_B 172 AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247 (341)
T ss_dssp HHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999999999999877653211112234556778999999999999999999999999999999999999999987
No 2
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.1e-52 Score=386.43 Aligned_cols=231 Identities=43% Similarity=0.719 Sum_probs=211.1
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
+++|+++|+++|.+++++|++++++++|++.++|+++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||++++
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 46799999999999999999999999999888888888899999999999999999999999999999999999999865
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~ 195 (270)
++.|++|++|||++++|+++||++|++++|++++.+.|..+.+|+||++.++++|+++|||+|++|+|++|++.++++++
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~ 161 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI 161 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999997655555578889888899999999999999999999999999999
Q ss_pred hCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 196 ~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++++|+|||+++.+++... +.++++++.+++||++++++|.|++||++|++++.|++|+++|+++||+++|
T Consensus 162 ~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~v 232 (324)
T 1w85_B 162 RDNDPVIFLEHLKLYRSFR---QEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEV 232 (324)
T ss_dssp HSSSCEEEEEETTTSSSCC---EECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred HcCCCEEEEechHhcCCCC---CCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999988765421 3455556778999999999999999999999999999999999999999987
No 3
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=9.6e-53 Score=386.64 Aligned_cols=232 Identities=45% Similarity=0.751 Sum_probs=212.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
++++|+++++++|.+++++|++|+++++|++.++|+++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||+++
T Consensus 2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~ 81 (324)
T 1umd_B 2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEI 81 (324)
T ss_dssp CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999999999999999988888887788999999999999999999999999999999999999996
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a 194 (270)
+++.|++|++|||++++|+++|++||++++|++++.+.|..+.+|+||+++++++|+++|||+|++|+|++|++.+++++
T Consensus 82 t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 161 (324)
T 1umd_B 82 QFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 161 (324)
T ss_dssp SSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 55778899999999999999999999999999998765554556888988889999999999999999999999999999
Q ss_pred HhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 195 ~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++.++|+|||+++.+++... ++++++++.+++||++++++|.|++||++|++++.|++|+++|+++||+++|
T Consensus 162 ~~~~~Pv~i~~p~~l~~~~~---~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~v 233 (324)
T 1umd_B 162 IRDEDPVVFLEPKRLYRSVK---EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233 (324)
T ss_dssp HHCSSCEEEEEEGGGSSSCC---EECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred HhcCCCEEEEechHhcCCCC---CCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988775421 3455566778999999999999999999999999999999999999999987
No 4
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=2.9e-52 Score=389.73 Aligned_cols=230 Identities=42% Similarity=0.707 Sum_probs=183.7
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
|.+++|+++|+++|.+++++|++|+++++|++.++++|+.+++|+++|||+||||+||+||+|+++|+|||++|++||++
T Consensus 48 m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~ 127 (369)
T 1ik6_A 48 VMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAE 127 (369)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEE
Confidence 46788999999999999999999999999998778877777899999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
++|+.|++|++|||++++|+++|++|++.++||+++.+.|...++|+||++.++++|+++|||+|++|+|++|++.++++
T Consensus 128 ~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~ 207 (369)
T 1ik6_A 128 IQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKA 207 (369)
T ss_dssp CCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence 65678899999999999999999999999999999987554445788998888999999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|++||+|+.+++.. .+.++++++.+++|+++++++|.|++||++|.+++.|++|+++|+ | +++|
T Consensus 208 A~~~~~Pv~i~~p~~l~r~~---~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~V 277 (369)
T 1ik6_A 208 AIRGDDPVVFLEPKILYRAP---REEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEV 277 (369)
T ss_dssp HHHSSSCEEEEEEGGGSSCC---CEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEE
T ss_pred HHhCCCCEEEEEehhhhccC---CCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEE
Confidence 99999999999998877642 134555567788999999999999999999999999999999997 8 8876
No 5
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=2.7e-51 Score=379.73 Aligned_cols=243 Identities=34% Similarity=0.625 Sum_probs=211.8
Q ss_pred eccCCCCCcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHH
Q 024237 20 IRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99 (270)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~ 99 (270)
|+|..++ +.|.. +.+++|+++++++|.+++++|++++++++|++ .+|+|+.+++|+++|||+||+|+||+|++|+++
T Consensus 6 ~~~~~~~-~~~~~-~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~ 82 (342)
T 2bfd_B 6 FQPDPEP-REYGQ-TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGF 82 (342)
T ss_dssp ---------CCSC-EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHH
T ss_pred eCCCCCC-CCCCc-cCCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcccchHHHHHHHhCCCeEEEcCcCHHHHHHH
Confidence 6677654 56654 47889999999999999999999999999998 677787789999999999999999999999999
Q ss_pred HHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCC-CEEEEecCCCCCCCCCCC-cchHHHHHccCCCcE
Q 024237 100 GVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLK 177 (270)
Q Consensus 100 AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~-pvi~~~~~G~~~~~G~tH-~~~~~a~lr~iPn~~ 177 (270)
|+|+|++|++||++++++.|++|++|||+|++|+++||+||+.++ ||+++.+.|.. ++|++| ++.|+++||++|||+
T Consensus 83 a~G~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~~~~d~~~l~~iP~l~ 161 (342)
T 2bfd_B 83 GIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYHSQSPEAFFAHCPGIK 161 (342)
T ss_dssp HHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGSSCCCHHHHHTSTTCE
T ss_pred HHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchhhHhHHHHHhcCCCcE
Confidence 999999999999986568889999999999999999999999999 99999875432 577776 478899999999999
Q ss_pred EEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHH
Q 024237 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257 (270)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa 257 (270)
|++|+|++|++.++++++++++|+|||+++.+++... +.++.+++.+++|+++++++|.|++||++|++++.|++|+
T Consensus 162 V~~Psd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa 238 (342)
T 2bfd_B 162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVA 238 (342)
T ss_dssp EECCSSHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCC---EEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHH
T ss_pred EEeeCCHHHHHHHHHHHHhcCCcEEEEecchhcCCCC---CCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHH
Confidence 9999999999999999999999999999987766532 3455556778999999999999999999999999999999
Q ss_pred HHHHhc-CCCeee
Q 024237 258 EILAKE-GISAEV 269 (270)
Q Consensus 258 ~~L~~~-Gi~~~V 269 (270)
++|+++ ||+++|
T Consensus 239 ~~L~~~~Gi~v~v 251 (342)
T 2bfd_B 239 SMAKEKLGVSCEV 251 (342)
T ss_dssp HHHHHHHCCCEEE
T ss_pred HHHHhhcCCCEEE
Confidence 999999 999987
No 6
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=1.2e-49 Score=367.89 Aligned_cols=232 Identities=38% Similarity=0.629 Sum_probs=207.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~ 113 (270)
|.+++|+++|+++|.+++++|++++++++|++.++|+++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||++
T Consensus 2 ~~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~ 81 (338)
T 1qs0_B 2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE 81 (338)
T ss_dssp EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999999888888778999999999999999999999999999999999999998
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCC-cchHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH-~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
++++.|++|++|||+|++|+++|++|++.++||+++.+.|. +++|++| +|+|+++||++|||+|+.|+|++|++.+++
T Consensus 82 ~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~ 160 (338)
T 1qs0_B 82 IQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLI 160 (338)
T ss_dssp CSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHH
T ss_pred eccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 65678889999999999999999999999999999987543 4577776 578999999999999999999999999999
Q ss_pred HhHhCCCCeEEeecccccCCCCC---Ccc----------cccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHH
Q 024237 193 AAIRDPDPVVFLENELLYGESFP---VSA----------EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259 (270)
Q Consensus 193 ~a~~~~~P~~ir~~~~~~~~~~~---~~~----------~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~ 259 (270)
+++++++|+|||+|+.+++...+ ..+ .++++++.+++|+++++++|.|++||++|++++.|++|+++
T Consensus 161 ~A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~ 240 (338)
T 1qs0_B 161 ASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE 240 (338)
T ss_dssp HHHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH
Confidence 99999999999999777665322 000 34455667889999999999999999999999999999997
Q ss_pred HHhcCCCeee
Q 024237 260 LAKEGISAEV 269 (270)
Q Consensus 260 L~~~Gi~~~V 269 (270)
+||+++|
T Consensus 241 ---~Gi~v~v 247 (338)
T 1qs0_B 241 ---SGVDAEV 247 (338)
T ss_dssp ---HCCCCEE
T ss_pred ---cCCCEEE
Confidence 6899886
No 7
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=3.5e-43 Score=347.65 Aligned_cols=213 Identities=16% Similarity=0.142 Sum_probs=182.9
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~ 113 (270)
.++++|++++++|.++++.+|+++++++|++.++.+. -.+.++|+|+||||+||+||||+++|+|||++ |++||++
T Consensus 336 ~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~---~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~ 412 (632)
T 3l84_A 336 KDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE---LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSA 412 (632)
T ss_dssp CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC---CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEE
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc---hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEE
Confidence 5789999999999999999999999999997655442 12346788999999999999999999999999 8999999
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCC-CCCCCCCc-chHHHHHccCCCcEEEccCCHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGL 190 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~-~~~G~tH~-~~~~a~lr~iPn~~V~~P~d~~e~~~~ 190 (270)
+| +.|+.|+++|||+ .|+ +++||++++ .+|.+ +.+|+||+ ++++++||+||||+|++|+|++|++.+
T Consensus 413 ~f-~~F~~~~~~~ir~-~a~--------~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~ 482 (632)
T 3l84_A 413 TF-FIFSEYLKPAARI-AAL--------MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKA 482 (632)
T ss_dssp EE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHH
T ss_pred ec-HHHHHHHHHHHHH-Hhc--------cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHH
Confidence 96 6678999999986 677 589999996 45654 45899983 577899999999999999999999999
Q ss_pred HHHhHhCCCCeEEeecccccCCCCCCcccccCC-CccccCCce-EEeEe--CCcEEEEEechhHHHHHHHHHHHHhcCCC
Q 024237 191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA-KIERE--GKDVTITAFSKIVGLSLKAAEILAKEGIS 266 (270)
Q Consensus 191 l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~-~vl~~--G~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 266 (270)
|+++++.++|+|||++|... ++.+ .+..+++++ +++++ |+|+|||++|+|++.|++||++|+++||+
T Consensus 483 l~~A~~~~~Pv~ir~~r~~~---------~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~ 553 (632)
T 3l84_A 483 WQIALNADIPSAFVLSRQKL---------KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFA 553 (632)
T ss_dssp HHHHHHCSSCEEEECCSSCB---------CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCEEEEEcCCCC---------CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCC
Confidence 99999999999999876421 2222 233456665 89999 89999999999999999999999999999
Q ss_pred eee
Q 024237 267 AEV 269 (270)
Q Consensus 267 ~~V 269 (270)
++|
T Consensus 554 ~~V 556 (632)
T 3l84_A 554 CNV 556 (632)
T ss_dssp EEE
T ss_pred eEE
Confidence 998
No 8
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.7e-43 Score=352.63 Aligned_cols=223 Identities=18% Similarity=0.217 Sum_probs=187.7
Q ss_pred cCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc
Q 024237 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY 106 (270)
Q Consensus 28 ~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~ 106 (270)
+.|+.+ +++++|++++++|.++++++|+++++++|++.+++++ +.+++|+++++|+||||+||+||+|+++|+|||++
T Consensus 371 ~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~ 449 (690)
T 3m49_A 371 PTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALH 449 (690)
T ss_dssp CCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred cccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHc
Confidence 356554 6889999999999999999999999999998877764 45678998887999999999999999999999999
Q ss_pred -CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCc-chHHHHHccCCCcEEEccC
Q 024237 107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPY 182 (270)
Q Consensus 107 -G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~-~~~~a~lr~iPn~~V~~P~ 182 (270)
|++||+++|+. |..+...|||+ .|+ +++||++++. +|.+ +.+|+||+ ++++++||+||||+|++|+
T Consensus 450 gG~~P~~~tf~~-Fs~f~~~air~-~al--------~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pa 519 (690)
T 3m49_A 450 GGLKTYGGTFFV-FSDYLRPAIRL-AAL--------MQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPA 519 (690)
T ss_dssp SSCEEEEEEEGG-GGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCS
T ss_pred CCCEEEEEecHH-HHHHHHHHHHH-HHh--------cCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeC
Confidence 89999998643 34444457775 677 5899999986 4553 45999994 4677999999999999999
Q ss_pred CHHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCC----ccccCCceEEeEeCC----cEEEEEechhHHHH
Q 024237 183 SSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSS----FCLPIGKAKIEREGK----DVTITAFSKIVGLS 253 (270)
Q Consensus 183 d~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~----~~~~~Gk~~vl~~G~----dvtIva~G~~v~~a 253 (270)
|++|++.+|++++++ ++|+|||++|.. .| .++.++ +.+++|+ +++++|+ |+||||+|+|++.|
T Consensus 520 d~~E~~~~l~~Ai~~~~~Pv~ir~~R~~----~p---~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~A 591 (690)
T 3m49_A 520 DGNESVAAWRLALESTNKPTALVLTRQD----LP---TLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLA 591 (690)
T ss_dssp SHHHHHHHHHHHHHCSSSCEEEECCSSE----EE---CCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEeeccc----CC---CCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHH
Confidence 999999999999998 799999987652 11 222222 4677887 7899986 99999999999999
Q ss_pred HHHHHHHHhcCCCeee
Q 024237 254 LKAAEILAKEGISAEV 269 (270)
Q Consensus 254 l~Aa~~L~~~Gi~~~V 269 (270)
++||++|+++||+++|
T Consensus 592 l~Aa~~L~~~GI~~~V 607 (690)
T 3m49_A 592 VEAQKALAVDGVDASV 607 (690)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCCeEE
Confidence 9999999999999997
No 9
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=9.2e-43 Score=346.46 Aligned_cols=217 Identities=21% Similarity=0.243 Sum_probs=184.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCc-cccchhhH-hhhCCCCeeecccchhHHHHHHHHHhhc-CCcc
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP 110 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~-~~~~~~~~-~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~P 110 (270)
.+++++|++++++|.++++++|+++++++|++.++++ ++.+.+|+ ++| |+||||+||+||+|+++|+|||+. |++|
T Consensus 352 ~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P 430 (663)
T 3kom_A 352 PVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKP 430 (663)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEE
Confidence 3578999999999999999999999999999887765 34556785 899 999999999999999999999999 9999
Q ss_pred EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCC-CCCCCCCc-chHHHHHccCCCcEEEccCCHHHH
Q 024237 111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDA 187 (270)
Q Consensus 111 i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~-~~~G~tH~-~~~~a~lr~iPn~~V~~P~d~~e~ 187 (270)
|+++| ..|+.++++|||+ .|+ +++||++++ .+|.+ +.+|+||+ ++++++||++|||+|++|+|++|+
T Consensus 431 ~~~tf-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~ 500 (663)
T 3kom_A 431 YGGTF-LVFSDYSRNAIRM-SAL--------MKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIET 500 (663)
T ss_dssp EEEEE-GGGHHHHHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHH
T ss_pred EEEeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHH
Confidence 99996 6688999999986 677 689999996 45554 45899993 466799999999999999999999
Q ss_pred HHHHHHhHh-CCCCeEEeecccccCCCCCCcccccCCC---ccccCCceEEeEe--CCcEEEEEechhHHHHHHHHHHHH
Q 024237 188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--GKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 188 ~~~l~~a~~-~~~P~~ir~~~~~~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
+.+++++++ .++|+|||++|. ..| .++.++ +.++.| ++++++ |+|+|||++|+|+++|++||++|+
T Consensus 501 ~~~l~~A~~~~~~Pv~ir~~r~----~~p---~~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~ 572 (663)
T 3kom_A 501 MIAWKEAVKSKDTPSVMVLTRQ----NLM---PVVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFE 572 (663)
T ss_dssp HHHHHHHHHCSSCCEEEECCSS----EEC---CCCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEccCc----cCC---CcCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHH
Confidence 999999999 799999998764 221 222222 346677 577887 899999999999999999999999
Q ss_pred hcCCCeee
Q 024237 262 KEGISAEV 269 (270)
Q Consensus 262 ~~Gi~~~V 269 (270)
++||+++|
T Consensus 573 ~~Gi~~~V 580 (663)
T 3kom_A 573 KKGIKLNV 580 (663)
T ss_dssp HTTCCCEE
T ss_pred hcCCCeEE
Confidence 99999997
No 10
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.6e-43 Score=348.49 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=191.6
Q ss_pred CcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhh-----CC----CCeeecccchhHH
Q 024237 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKY-----GP----ERVLDTPITEAGF 96 (270)
Q Consensus 27 ~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~-----gp----~R~id~GIaE~~~ 96 (270)
.+.|..+..++++|++++++|.+++++||++|++++|++.+++++ +.+.+|+++| || +||||+||+||+|
T Consensus 365 ~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~m 444 (700)
T 3rim_A 365 LPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAM 444 (700)
T ss_dssp CCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHH
Confidence 356765556899999999999999999999999999998777653 3347788888 46 5999999999999
Q ss_pred HHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCc-chHHHHHcc
Q 024237 97 TGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYAS 172 (270)
Q Consensus 97 vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~-~~~~a~lr~ 172 (270)
+++|+|||++ |++||+++| ..|+.++++|||+ +|+ +++||++++. +|.+ +.+|+||+ ++++++||+
T Consensus 445 v~~A~GlA~~gG~~Pv~~tF-~~F~d~~~~~ir~-~al--------~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~ 514 (700)
T 3rim_A 445 GAILSGIVLHGPTRAYGGTF-LQFSDYMRPAVRL-AAL--------MDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRA 514 (700)
T ss_dssp HHHHHHHHHHSSCEEEEEEE-GGGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEec-HHHHHHHHHHHHH-hcC--------CCCCEEEEEeCCCcccCCCCCccCChhHHHHHhc
Confidence 9999999999 999999987 4567888999986 777 5899999975 5554 45999993 466799999
Q ss_pred CCCcEEEccCCHHHHHHHHHHhHhCC---CCeEEeecccccCCCCCCcccccCC-CccccCCceEEeEeCC--------c
Q 024237 173 VPGLKVLSPYSSEDARGLLKAAIRDP---DPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREGK--------D 240 (270)
Q Consensus 173 iPn~~V~~P~d~~e~~~~l~~a~~~~---~P~~ir~~~~~~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~G~--------d 240 (270)
||||+|++|+|++|++.+|+++++++ +|+|||++|.. .| .++.+ .+.+++|+ +++++|+ |
T Consensus 515 iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~----~~---~~~~~~~~~~~~G~-~vlr~g~~~~~~~~~d 586 (700)
T 3rim_A 515 IPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQG----VP---VLDGTDAEGVARGG-YVLSDAGGLQPGEEPD 586 (700)
T ss_dssp STTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSE----EC---CCTTCCHHHHHHSC-EEEECCSCCCTTCCCS
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEecccc----CC---CcCcccccccCCCc-EEEecCCccccCCCCC
Confidence 99999999999999999999999985 59999987652 21 23333 35688898 7999997 9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 241 VTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 241 vtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
||||++|+|+++|++||++|+++||+++|
T Consensus 587 vtiia~G~~v~~al~Aa~~L~~~Gi~~~V 615 (700)
T 3rim_A 587 VILIATGSEVQLAVAAQTLLADNDILARV 615 (700)
T ss_dssp EEEEECGGGHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999998
No 11
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.3e-42 Score=343.39 Aligned_cols=221 Identities=23% Similarity=0.284 Sum_probs=190.1
Q ss_pred CCcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhh
Q 024237 26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105 (270)
Q Consensus 26 ~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~ 105 (270)
.++.|+.. .++++|++|+++|.+++++|+++|++++|++.+ ++ ++.|+++| |+||||+||+||+|+++|+|||+
T Consensus 303 ~~~~~~~~-~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~--~~--~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~ 376 (616)
T 3mos_A 303 SLPSYKVG-DKIATRKAYGQALAKLGHASDRIIALDGDTKNS--TF--SEIFKKEH-PDRFIECYIAEQNMVSIAVGCAT 376 (616)
T ss_dssp SCCCCCTT-CBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHH--HS--HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHG
T ss_pred CCcccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCC--cc--hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHH
Confidence 35667654 678999999999999999999999999999743 32 47899999 99999999999999999999999
Q ss_pred cCC-ccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCC-cchHHHHHccCCCcEEEcc
Q 024237 106 YGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQH-SHCYAAWYASVPGLKVLSP 181 (270)
Q Consensus 106 ~G~-~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH-~~~~~a~lr~iPn~~V~~P 181 (270)
.|+ +||+.+| +.|++|++|||+++ ++ +++||+++.. +|.+ +.+|+|| ++.++++||++|||+|++|
T Consensus 377 ~G~~~~~~~~f-~~Fl~~a~dqi~~~-a~--------~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P 446 (616)
T 3mos_A 377 RNRTVPFCSTF-AAFFTRAFDQIRMA-AI--------SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYP 446 (616)
T ss_dssp GGCCEEEEEEE-GGGGGGGHHHHHHH-HH--------TTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECC
T ss_pred cCCCCEEEEeh-HHHHHHHHHHHHHH-HH--------hCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEec
Confidence 997 6777775 67889999999996 55 4788888865 4653 4589998 3577899999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCc--EEEEEechhHHHHHHHHHH
Q 024237 182 YSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD--VTITAFSKIVGLSLKAAEI 259 (270)
Q Consensus 182 ~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~d--vtIva~G~~v~~al~Aa~~ 259 (270)
+|++|+..+++++++.++|+|+|.+|. .. +.++..++.+++||++++++|+| +|||++|++++.|++|+++
T Consensus 447 ~d~~e~~~~l~~a~~~~gp~~ir~~r~----~~---p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~ 519 (616)
T 3mos_A 447 SDGVATEKAVELAANTKGICFIRTSRP----EN---AIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAEL 519 (616)
T ss_dssp CSHHHHHHHHHHHHTCCSEEEEECCSS----CC---BCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeCC----CC---CccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 999999999999999999999997653 11 23444456788999999999987 9999999999999999999
Q ss_pred HHhcCCCeee
Q 024237 260 LAKEGISAEV 269 (270)
Q Consensus 260 L~~~Gi~~~V 269 (270)
|+++||+++|
T Consensus 520 L~~~Gi~v~V 529 (616)
T 3mos_A 520 LKKEKINIRV 529 (616)
T ss_dssp HHTTTCEEEE
T ss_pred HHhcCCCEEE
Confidence 9999999987
No 12
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=6.8e-43 Score=349.15 Aligned_cols=217 Identities=19% Similarity=0.213 Sum_probs=186.3
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhh---hCC---CCeeecccchhHHHHHHHHHhhc
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK---YGP---ERVLDTPITEAGFTGIGVGAAYY 106 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~---~gp---~R~id~GIaE~~~vg~AaGlA~~ 106 (270)
.+++++|++++++|.++++++|++|++++|++.+++++ +.+.+|+++ | | +||||+||+||+|+++|+|||++
T Consensus 392 ~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~ 470 (711)
T 3uk1_A 392 GETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLH 470 (711)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999998776653 234678888 9 8 99999999999999999999995
Q ss_pred -CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCC-CCCCCCCc-chHHHHHccCCCcEEEccC
Q 024237 107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPY 182 (270)
Q Consensus 107 -G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~-~~~G~tH~-~~~~a~lr~iPn~~V~~P~ 182 (270)
|++||+++| +.|++|+++|||+ .|+ +++||++++. +|.+ +.+|+||+ ++++++||+||||+|++|+
T Consensus 471 ~G~~Pv~~~f-~~F~~~~~~~ir~-~a~--------~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pa 540 (711)
T 3uk1_A 471 GGYKPFGGTF-LTFSDYSRNALRV-AAL--------MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPA 540 (711)
T ss_dssp SSCEEEEEEE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS
T ss_pred CCCEEEEEEh-HHHHHHHHHHHHH-hhh--------cCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecC
Confidence 999999986 6788999999987 677 5899999875 5554 45999993 4667999999999999999
Q ss_pred CHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCC---ccccCCceEEeEe--C----CcEEEEEechhHHHH
Q 024237 183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--G----KDVTITAFSKIVGLS 253 (270)
Q Consensus 183 d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--G----~dvtIva~G~~v~~a 253 (270)
|++|++.+|+++++.++|+|||++|.. .| .++.++ +.++.|++ ++++ | +|||||++|+|+++|
T Consensus 541 d~~E~~~~l~~Ai~~~~Pv~ir~~r~~----~p---~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~a 612 (711)
T 3uk1_A 541 DTVETAVAWTYAVAHQHPSCLIFSRQN----LA---FNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELA 612 (711)
T ss_dssp SHHHHHHHHHHHHHSSSCEEEECCSSE----EC---CCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCC----CC---CCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHH
Confidence 999999999999999999999987642 22 222222 46778874 7774 8 799999999999999
Q ss_pred HHHHHHHHhcCCCeee
Q 024237 254 LKAAEILAKEGISAEV 269 (270)
Q Consensus 254 l~Aa~~L~~~Gi~~~V 269 (270)
++||++|+++||+++|
T Consensus 613 l~Aa~~L~~~GI~~~V 628 (711)
T 3uk1_A 613 MKAVEPLAQQGIAARV 628 (711)
T ss_dssp HHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHcCCCeEE
Confidence 9999999999999997
No 13
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=4.7e-42 Score=342.83 Aligned_cols=221 Identities=19% Similarity=0.258 Sum_probs=187.8
Q ss_pred cCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc--ccchhhHh------hhCCCCeeecccchhHHHHH
Q 024237 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY--KISKGLLE------KYGPERVLDTPITEAGFTGI 99 (270)
Q Consensus 28 ~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~--~~~~~~~~------~~gp~R~id~GIaE~~~vg~ 99 (270)
+.|..+.+++++|++++++|.++++++|+++++++|++.+++++ ++ ..|++ +| |+||||+||+||+|+++
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~-~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~ 424 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEA-LDFQPPSSGSGNY-SGRYIRYGIREHAMGAI 424 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTC-CEECCTTTSSEET-TCCEEECCSCHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccc-cccccccccccCC-CCceecCCccHHHHHHH
Confidence 34533346789999999999999999999999999998777664 21 45777 99 99999999999999999
Q ss_pred HHHHhhcC-Cc-cEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcch--HHHHHccC
Q 024237 100 GVGAAYYG-LK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHC--YAAWYASV 173 (270)
Q Consensus 100 AaGlA~~G-~~-Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~--~~a~lr~i 173 (270)
|+|||++| ++ ||+++| ..|+.++++|||+ .|+ +++||+++++ +|.+. .+|+|| |+ ++++||+|
T Consensus 425 a~GlA~~Gg~~~P~~~~f-~~F~~~~~~air~-~a~--------~~lpvv~v~t~~g~g~G~dG~tH-q~~edla~lr~i 493 (680)
T 1gpu_A 425 MNGISAFGANYKPYGGTF-LNFVSYAAGAVRL-SAL--------SGHPVIWVATHDSIGVGEDGPTH-QPIETLAHFRSL 493 (680)
T ss_dssp HHHHHHHCTTCEEEEEEE-HHHHGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTS
T ss_pred HHHHHhcCCCceEEEeeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCccccCCCCCcc-CCHHHHHHhcCC
Confidence 99999998 99 999987 5567799999987 777 5899999974 56554 499999 54 45999999
Q ss_pred CCcEEEccCCHHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCcc-ccCCceEEeEeC--CcEEEEEechh
Q 024237 174 PGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFC-LPIGKAKIEREG--KDVTITAFSKI 249 (270)
Q Consensus 174 Pn~~V~~P~d~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~~-~~~Gk~~vl~~G--~dvtIva~G~~ 249 (270)
|||+|++|+|++|++.+++++++. ++|+|||++|.. . +.++.+++. +++| ++++++| .|||||++|++
T Consensus 494 P~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~----~---~~~~~~~~~~~~~G-~~vl~~g~~~dvtiva~G~~ 565 (680)
T 1gpu_A 494 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQN----L---PQLEGSSIESASKG-GYVLQDVANPDIILVATGSE 565 (680)
T ss_dssp SSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSC----B---CCCTTCCHHHHTTS-CEEEECCSSCSEEEEECTHH
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCC----C---CCCCCcchhhccCC-CEEEecCCCCCEEEEEEcHH
Confidence 999999999999999999999997 899999988642 2 223333444 7787 5899998 89999999999
Q ss_pred HHHHHHHHHHHHhcCCCeee
Q 024237 250 VGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 250 v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++|++||++|+++||+++|
T Consensus 566 v~~al~Aa~~L~~~Gi~~~V 585 (680)
T 1gpu_A 566 VSLSVEAAKTLAAKNIKARV 585 (680)
T ss_dssp HHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998
No 14
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=6.2e-42 Score=339.54 Aligned_cols=209 Identities=26% Similarity=0.314 Sum_probs=183.8
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEee
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~ 115 (270)
..+|+++|+++|.+++++|++++++++|+.... ++ .+|+++| |+||||+||+|++|+++|+|||++|++||+++|
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~---~~-~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGS---GL-VEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIY 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TC-HHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCc---Ch-HHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEec
Confidence 678999999999999999999999999986433 32 7899999 999999999999999999999999999999996
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+.|++|++|||++++|+ +++||+++... |..+++|+||++ .++++||++|||+|++|+|++|++.++++
T Consensus 396 -~~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 396 -STFLQRAYDQVLHDVAI--------EHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp -HHHHGGGHHHHHHTTTT--------TTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 66889999999999997 58999999874 555558999975 45699999999999999999999999999
Q ss_pred hHhCCCCeEEeecccccCCCCCCccccc-CCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 194 AIRDPDPVVFLENELLYGESFPVSAEVL-DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~-~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+|||++|..+ + .++ ++.+.+++|+++++++|.|++||++|+++++|++|+++|+ +++|
T Consensus 467 a~~~~~Pv~i~~~r~~~----~---~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~V 532 (629)
T 2o1x_A 467 AQTHDGPFAIRYPRGNT----A---QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGV 532 (629)
T ss_dssp HHHSSSCEEEECCSSBC----C---CCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEE
T ss_pred HHhCCCCEEEEecCCCC----C---CCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEE
Confidence 99999999999987532 1 111 2345688999999999999999999999999999999996 5554
No 15
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.9e-41 Score=337.96 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=187.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcc-ccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccE
Q 024237 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV 111 (270)
Q Consensus 34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~-~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi 111 (270)
++++++|++++++|.++++++|+++++++|++.+++++ +.+..|+++| |+||||+||+||+|+++|+|||+. |++||
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~ 430 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY 430 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence 45789999999999999999999999999998877765 3346799999 999999999999999999999999 89999
Q ss_pred EEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCc-chHHHHHccCCCcEEEccCCHHHHH
Q 024237 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHS-HCYAAWYASVPGLKVLSPYSSEDAR 188 (270)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~-~~~~a~lr~iPn~~V~~P~d~~e~~ 188 (270)
+.+| +.|+.++++|||+ +|+ +++||+++++ +|.+. .+|+||+ ..++++||++|||+|++|+|++|++
T Consensus 431 ~~tf-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~ 500 (669)
T 2r8o_A 431 TSTF-LMFVEYARNAVRM-AAL--------MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESA 500 (669)
T ss_dssp EEEE-GGGGGTTHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred Eeeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 9887 5567799999998 676 5899999986 45554 4999993 2445999999999999999999999
Q ss_pred HHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCc---cccCCceEEeEe--C-CcEEEEEechhHHHHHHHHHHHH
Q 024237 189 GLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF---CLPIGKAKIERE--G-KDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 189 ~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~---~~~~Gk~~vl~~--G-~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
.+++++++. ++|+|||++|..+. .++.+++ .+++| ++++++ | .|+|||++|+++++|++||++|+
T Consensus 501 ~~l~~a~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~ 572 (669)
T 2r8o_A 501 VAWKYGVERQDGPTALILSRQNLA-------QQERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLT 572 (669)
T ss_dssp HHHHHHHHCSSSCEEEECCSSEEC-------CCCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCC-------CCCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 999999997 89999998875332 2232222 26777 578998 8 89999999999999999999999
Q ss_pred hcCCCeee
Q 024237 262 KEGISAEV 269 (270)
Q Consensus 262 ~~Gi~~~V 269 (270)
++||+++|
T Consensus 573 ~~Gi~~~V 580 (669)
T 2r8o_A 573 AEGVKARV 580 (669)
T ss_dssp HHTCCEEE
T ss_pred hcCCCeEE
Confidence 99999997
No 16
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-41 Score=333.63 Aligned_cols=210 Identities=21% Similarity=0.321 Sum_probs=182.8
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~ 114 (270)
...+|+++|+++|.+++++|++++++++|+.... ++ .+|+++| |+||||+||+|++|+++|+|+|++|++||+++
T Consensus 317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~---~~-~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 391 (621)
T 2o1s_A 317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGS---GM-VEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI 391 (621)
T ss_dssp -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TC-HHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCc---Ch-HHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4578999999999999999999999999986433 33 7899999 99999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCCcc-hHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
| +.|++|++|||++++|+ +++||+++.+. |..+.+|+||++ .++++||++|||+|+.|+|++|++.+++
T Consensus 392 ~-~~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~ 462 (621)
T 2o1s_A 392 Y-STFLQRAYDQVLHDVAI--------QKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY 462 (621)
T ss_dssp E-TTGGGGGHHHHHHTTTT--------TTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred h-HhHHHHHHHHHHHHHHh--------cCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 5 66789999999999997 68999999875 555559999976 4569999999999999999999999999
Q ss_pred HhHhC-CCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 193 AAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 193 ~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++++. ++|+|||++|..+.. .++++. +.+++|+++++++|.|++|||+|+++++|++| ++||+++|
T Consensus 463 ~a~~~~~~Pv~i~~~r~~~~~-----~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~V 529 (621)
T 2o1s_A 463 TGYHYNDGPSAVRYPRGNAVG-----VELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATL 529 (621)
T ss_dssp HHHHCCSSCEEEECCSSBCCC-----CCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEE
T ss_pred HHHHcCCCCEEEEeCCCCCCC-----CCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEE
Confidence 99998 899999998764321 112222 66889999999999999999999999999999 45888876
No 17
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=7.7e-41 Score=333.85 Aligned_cols=222 Identities=16% Similarity=0.224 Sum_probs=187.7
Q ss_pred cCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccc-cchhhHh-hhCCCCeeecccchhHHHHHHHHHhh
Q 024237 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAY 105 (270)
Q Consensus 28 ~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~-~~~~~~~-~~gp~R~id~GIaE~~~vg~AaGlA~ 105 (270)
+.|..+..++++|++++++|.++++++|+++++++|++.++++.. -+..|++ +| |+||||+||+||+|+++|+|||+
T Consensus 357 ~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~ 435 (675)
T 1itz_A 357 PKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIAL 435 (675)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHT
T ss_pred hhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHHh
Confidence 345333467899999999999999999999999999987665531 1134886 99 99999999999999999999999
Q ss_pred cC--CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcchH--HHHHccCCCcEEE
Q 024237 106 YG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCY--AAWYASVPGLKVL 179 (270)
Q Consensus 106 ~G--~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~~--~a~lr~iPn~~V~ 179 (270)
+| ++||+++| ..|+.++++|||+ +|+ +++||+++.. +|.+. .+|+|| |++ +++||++|||+|+
T Consensus 436 ~G~~~~P~~~t~-~~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~ 504 (675)
T 1itz_A 436 HSPGFVPYCATF-FVFTDYMRGAMRI-SAL--------SEAGVIYVMTHDSIGLGEDGPTH-QPIEHLVSFRAMPNILML 504 (675)
T ss_dssp TCTTCEEEEEEE-GGGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHSSSSCEEE
T ss_pred cCCCCEEEEEEH-HHHHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCCCCc-CcHHHHHHhccCCCeEEE
Confidence 99 99999997 5567799999987 676 5899999974 55554 499999 544 5999999999999
Q ss_pred ccCCHHHHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCc-cccCCceEEeEe---C--CcEEEEEechhHHH
Q 024237 180 SPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIERE---G--KDVTITAFSKIVGL 252 (270)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~---G--~dvtIva~G~~v~~ 252 (270)
+|+|++|++.+++++++. ++|+|||++|. .. +.++.+.+ .+++| ++++++ | .|+|||++|+++++
T Consensus 505 ~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~----~~---p~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~ 576 (675)
T 1itz_A 505 RPADGNETAGAYKVAVLNRKRPSILALSRQ----KL---PHLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEI 576 (675)
T ss_dssp CCCSHHHHHHHHHHHHHCTTSCEEEEECSS----CB---CCCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHH
T ss_pred ECCCHHHHHHHHHHHHHhCCCcEEEEecCC----CC---CCCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHH
Confidence 999999999999999997 89999998864 22 22333344 47888 788998 8 89999999999999
Q ss_pred HHHHHHHHHhcCCCeee
Q 024237 253 SLKAAEILAKEGISAEV 269 (270)
Q Consensus 253 al~Aa~~L~~~Gi~~~V 269 (270)
|++|+++|+++||+++|
T Consensus 577 al~Aa~~L~~~Gi~v~V 593 (675)
T 1itz_A 577 AAKAADELRKEGKTVRV 593 (675)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCcEEE
Confidence 99999999999999997
No 18
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-40 Score=331.26 Aligned_cols=215 Identities=20% Similarity=0.181 Sum_probs=184.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccc-cchhhHh-hhCCCCeeecccchhHHHHHHHHHhhcC-CccE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYG-LKPV 111 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~-~~~~~~~-~~gp~R~id~GIaE~~~vg~AaGlA~~G-~~Pi 111 (270)
+++++|++++++|.++++++|+++++++|++.+++++. .+.+|++ +| |+||||+||+||+|+++|+|||++| ++||
T Consensus 347 ~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~ 425 (651)
T 2e6k_A 347 KPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRAY 425 (651)
T ss_dssp SCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred ccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEEE
Confidence 57899999999999999999999999999987766642 3467887 99 9999999999999999999999998 9999
Q ss_pred EEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC-CCCCCcchHH--HHHccCCCcEEEccCCHHHH
Q 024237 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG-VGAQHSHCYA--AWYASVPGLKVLSPYSSEDA 187 (270)
Q Consensus 112 ~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~-~G~tH~~~~~--a~lr~iPn~~V~~P~d~~e~ 187 (270)
+++|.. |+.++++|||. .|+ +++||++++ ++|.+.+ +|+|| |..+ ++||++|||+|+.|+|++|+
T Consensus 426 ~~t~~~-F~~~~~~air~-~a~--------~~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~E~ 494 (651)
T 2e6k_A 426 GGTFLV-FSDYMRPAIRL-AAL--------MGVPTVFVFTHDSIALGEDGPTH-QPVEHLMSLRAMPNLFVIRPADAYET 494 (651)
T ss_dssp EEEEGG-GGGGSHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred EEeHHH-HHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCcCcc-ccHHHHHHhcCCCCcEEEecCCHHHH
Confidence 999855 56699999986 676 589999995 5565544 99999 6554 99999999999999999999
Q ss_pred HHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCc-cccCCceEEeEeC--CcEEEEEechhHHHHHHHHHHHHhc
Q 024237 188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAKE 263 (270)
Q Consensus 188 ~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~G--~dvtIva~G~~v~~al~Aa~~L~~~ 263 (270)
+.+++++++. ++|+|||++|..+ | .++.+++ .++.| ++++++| .|++||++|+++++|++|+++|+++
T Consensus 495 ~~~l~~A~~~~~~Pv~i~~~r~~~----~---~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~ 566 (651)
T 2e6k_A 495 FYAWLVALRRKEGPTALVLTRQAV----P---LLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREK 566 (651)
T ss_dssp HHHHHHHHHCCSSCEEEECCSSCB----C---CCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCC----C---CCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 9999999997 8999999886532 1 2222222 36677 6889988 8999999999999999999999999
Q ss_pred CCCeee
Q 024237 264 GISAEV 269 (270)
Q Consensus 264 Gi~~~V 269 (270)
||+++|
T Consensus 567 Gi~~~V 572 (651)
T 2e6k_A 567 GVRVRV 572 (651)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 999987
No 19
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.5e-40 Score=329.96 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=184.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCcccc---chhhHh-hhCCCCeeecccchhHHHHHHHHHhhc-CCc
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI---SKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYY-GLK 109 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~---~~~~~~-~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~ 109 (270)
+++++|++++++|.++++++|+++++++|++.+++++.. +..|++ +| |+||||+||+||+|+++|+|||++ |++
T Consensus 350 ~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~ 428 (673)
T 1r9j_A 350 SAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGII 428 (673)
T ss_dssp SCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCCE
Confidence 578999999999999999999999999999877776420 234887 99 999999999999999999999999 599
Q ss_pred cEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCC-CCCCCCcchH--HHHHccCCCcEEEccCCHH
Q 024237 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQHSHCY--AAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 110 Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~-~~G~tH~~~~--~a~lr~iPn~~V~~P~d~~ 185 (270)
||+++| ..|+.++++|||+ +|+ +++||++++. +|.+. .+|+|| |++ +++||+||||+|+.|+|++
T Consensus 429 P~~~~~-~~F~~~~~~~ir~-~a~--------~~~pvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~ 497 (673)
T 1r9j_A 429 PFGGTF-LNFIGYALGAVRL-AAI--------SHHRVIYVATHDSIGVGEDGPTH-QPVELVAALRAMPNLQVIRPSDQT 497 (673)
T ss_dssp EEEEEE-GGGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHHSTTCEEECCSSHH
T ss_pred EEEEeh-HHHHHHHHHHHHH-HHh--------cCCCEEEEEECCccCcCCCCccc-CCHHHHHHHcCCCCCEEEeCCCHH
Confidence 999997 5567799999988 677 5899999974 56544 499999 544 5999999999999999999
Q ss_pred HHHHHHHHhHhC-CCCeEEeecccccCCCCCCcccccCCCc-cccCCceEEeEeC--CcEEEEEechhHHHHHHHHHHHH
Q 024237 186 DARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 186 e~~~~l~~a~~~-~~P~~ir~~~~~~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~G--~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
|++.+++++++. ++|+|||++|..+ +.++.+.+ .+++| ++++++| .|||||++|+++++|++|+++|+
T Consensus 498 e~~~~l~~a~~~~~~Pv~i~~~r~~~-------~~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~ 569 (673)
T 1r9j_A 498 ETSGAWAVALSSIHTPTVLCLSRQNT-------EPQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALS 569 (673)
T ss_dssp HHHHHHHHHHHCTTCCEEEECCSSEE-------CCCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC-------CCCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHH
Confidence 999999999997 8999999886522 22333334 47788 7899998 89999999999999999999999
Q ss_pred hcCCCeee
Q 024237 262 KEGISAEV 269 (270)
Q Consensus 262 ~~Gi~~~V 269 (270)
++ |+++|
T Consensus 570 ~~-i~~~V 576 (673)
T 1r9j_A 570 GE-LRVRV 576 (673)
T ss_dssp TT-CCEEE
T ss_pred hc-CCEEE
Confidence 99 99987
No 20
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=7e-36 Score=304.08 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=177.9
Q ss_pred ccchHHHHHHHHHHHHhhcC---CcEEEEecCCCC-C--------CCccc-cchhhH-----------hhhCCCCeeecc
Q 024237 35 KQMMVREALNSALDEEMSAD---PKVFLMGEEVGE-Y--------QGAYK-ISKGLL-----------EKYGPERVLDTP 90 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d---~~iv~l~~Dl~~-~--------~g~~~-~~~~~~-----------~~~gp~R~id~G 90 (270)
.+.+++++|++.|.+++++| ++||++++|++. . ++++. ....|. +.| |+||||+|
T Consensus 490 ~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~G 568 (886)
T 2qtc_A 490 KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQEG 568 (886)
T ss_dssp SCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEECC
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeeec
Confidence 56899999999999999998 999999999763 2 11110 013343 677 99999999
Q ss_pred cchhHH-H---HHHHHHhhcC--CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCC--CCCCCCCC
Q 024237 91 ITEAGF-T---GIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGAQH 162 (270)
Q Consensus 91 IaE~~~-v---g~AaGlA~~G--~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~--~~~~G~tH 162 (270)
|+||++ + ++|+|||++| ++||+.+++.|.++|++||+++++++ ++.++++.+..+. .+++|+||
T Consensus 569 IaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~--------~~~~v~l~~~~~~~~~g~dG~tH 640 (886)
T 2qtc_A 569 INELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQ--------QARGFLIGGTSGRTTLNGEGLQH 640 (886)
T ss_dssp SCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHT--------TCCCEEEEESCSTTTSTTTCTTT
T ss_pred cCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHH--------hcCCEEEEEecCcccCCCCCCcc
Confidence 999995 5 7999999999 89998876555489999999999987 5788888766432 35699999
Q ss_pred cc-hHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC-CCC----eEEeecccccCCCCCCcccccCCC-ccccCCceEEe
Q 024237 163 SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDP----VVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE 235 (270)
Q Consensus 163 ~~-~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~-~~P----~~ir~~~~~~~~~~~~~~~~~~~~-~~~~~Gk~~vl 235 (270)
+. +++++||++|||+|+.|+|+.|++.+++++++. ++| +|+++++.. +++.. +.++++. ..+ +|+++++
T Consensus 641 q~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~--~~~~~-p~~~~~~~~~~-~gga~vl 716 (886)
T 2qtc_A 641 EDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN--ENYHM-PAMPEGAEEGI-RKGIYKL 716 (886)
T ss_dssp CCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS--CCBCC-CCCCTTCHHHH-HHTCEEE
T ss_pred CCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc--cccCC-CCCCcchhhhc-cCceEEE
Confidence 64 778999999999999999999999999999986 679 999987642 11100 2233322 334 7999999
Q ss_pred EeC----CcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 236 REG----KDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 236 ~~G----~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
++| +||+||++|+++++|++||++|+++ ||+++|
T Consensus 717 r~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~V 755 (886)
T 2qtc_A 717 ETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDV 755 (886)
T ss_dssp EEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEE
T ss_pred EecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEE
Confidence 998 7999999999999999999999998 999987
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=4.8e-37 Score=312.11 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=177.4
Q ss_pred HHHhhcCCcEEEEecCCCCC--------------CCccccchhh------HhhhCCCCeeecccchhHHHHHHHHHhhcC
Q 024237 48 DEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGIGVGAAYYG 107 (270)
Q Consensus 48 ~~~~~~d~~iv~l~~Dl~~~--------------~g~~~~~~~~------~~~~gp~R~id~GIaE~~~vg~AaGlA~~G 107 (270)
.+++++|++|+++++|++.. +++|..+++| +++++|+||+|+||||++++|+|+|||+.|
T Consensus 528 ~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G 607 (868)
T 2yic_A 528 GSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGN 607 (868)
T ss_dssp HHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccC
Confidence 35699999999999999864 6677788899 786779999999999999999999999999
Q ss_pred --CccEEEeehhhHHHHH---HHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcch-HHHHH--ccCCCcEEE
Q 024237 108 --LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--ASVPGLKVL 179 (270)
Q Consensus 108 --~~Pi~~~~~~~f~~ra---~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~-~~a~l--r~iPn~~V~ 179 (270)
.+|+++.+|++|+++| +||++++. ..+| + +++||+++.++|. .++|++||++ +|.++ +++|||+|+
T Consensus 608 ~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~-~~k~--~--~~~~vvi~~p~G~-~G~Gp~Hs~~~~E~~l~l~~~pnm~V~ 681 (868)
T 2yic_A 608 PDAMVLWEAQFGDFVNGAQSIIDEFISSG-EAKW--G--QLSDVVLLLPHGH-EGQGPDHTSGRIERFLQLWAEGSMTIA 681 (868)
T ss_dssp TTSEEEEECSSGGGGGGGHHHHHHTTTTH-HHHH--C--CCCCCEEEEECCC-SSSCTTSSCCCHHHHHHHCCTTSCEEE
T ss_pred CCCceEEEEehHHHHhhHHHHHHHHHHHH-HHHh--C--CCCCEEEEecCCC-CCCChhhcCCcHHHHHhcCCCCCCEEE
Confidence 4568899999999998 99999886 3333 2 5899999999766 4699999876 88766 999999999
Q ss_pred ccCCHHHHHHHHHHhHhCC--CCeEEeecccccCCCCCCccc--ccCCCccccCCceEE---eEeCCcE--EEEEechhH
Q 024237 180 SPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSAE--VLDSSFCLPIGKAKI---EREGKDV--TITAFSKIV 250 (270)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~~--~P~~ir~~~~~~~~~~~~~~~--~~~~~~~~~~Gk~~v---l~~G~dv--tIva~G~~v 250 (270)
+|+|+.|++.+|+.++..+ +|+||++||.+||.+.+.++. ..++.+..++|++.+ +++|+|| |||++|.+
T Consensus 682 ~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~- 760 (868)
T 2yic_A 682 MPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI- 760 (868)
T ss_dssp CCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-
T ss_pred EeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-
Confidence 9999999999999988764 999999999998765332221 111234447899988 7899999 99999999
Q ss_pred HHHHHHHHHHHhcC-CCeee
Q 024237 251 GLSLKAAEILAKEG-ISAEV 269 (270)
Q Consensus 251 ~~al~Aa~~L~~~G-i~~~V 269 (270)
..++++++ +++| |+++|
T Consensus 761 ~~~l~aa~--~~~g~i~v~V 778 (868)
T 2yic_A 761 YYELAARK--AKENREDVAI 778 (868)
T ss_dssp HHHHHHHH--HHHTCTTEEE
T ss_pred HHHHHHHH--HhCCCCCEEE
Confidence 77787776 6778 99887
No 22
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=6.2e-36 Score=305.56 Aligned_cols=224 Identities=21% Similarity=0.239 Sum_probs=183.2
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCC--------------CCCccccchhhHhhhCCCCeeecccchhHHHHHHH
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~--------------~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~Aa 101 (270)
..+|..+++.+|.+++++|++|+++++|++. .++.|..+++|+++|||+||+|+||||++++|+|+
T Consensus 590 ~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~ 669 (933)
T 2jgd_A 590 LFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEY 669 (933)
T ss_dssp CBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHH
Confidence 5789999999999999999999999999975 24455667889999999999999999999999999
Q ss_pred HHhhcCCc--cEEEeehhhHHH---HHHHHHHHHH-hhccccCCCCCCCCEEEEecCCCCCCCCCCCcc-hHHHHHc--c
Q 024237 102 GAAYYGLK--PVVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA--S 172 (270)
Q Consensus 102 GlA~~G~~--Pi~~~~~~~f~~---ra~dqi~~~~-a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~-~~~a~lr--~ 172 (270)
|+|+.|.+ |+++.+|++|++ |+|||+++++ +++ .+++||+++.++|. .+.|++||+ .+|.++. +
T Consensus 670 G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~------~~~~~vv~~l~~G~-~g~G~~Hss~~~E~~l~~~~ 742 (933)
T 2jgd_A 670 GYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKW------GRMCGLVMLLPHGY-EGQGPEHSSARLERYLQLCA 742 (933)
T ss_dssp HHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHH------CCCCCCEEEEECCC-SSSCTTSSCCCHHHHHHTCC
T ss_pred HHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHH------ccCCCEEEEEeCCC-CCCCcccccchHHHHHHHhC
Confidence 99999998 999888899997 9999999988 764 26899999998764 356888864 5887775 6
Q ss_pred CCCcEEEccCCHHHHHHHHHHhH-hC-CCCeEEeecccccCCCCCCcc--cccCCCccccCCceEEeEeCCcE--EEEEe
Q 024237 173 VPGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDV--TITAF 246 (270)
Q Consensus 173 iPn~~V~~P~d~~e~~~~l~~a~-~~-~~P~~ir~~~~~~~~~~~~~~--~~~~~~~~~~~Gk~~vl~~G~dv--tIva~ 246 (270)
+|||+|+.|+|+.|++.+|++++ +. ++|++||+||.+++.+...++ ++++..+.+++|++.+++ |+|| +|+++
T Consensus 743 ~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~ 821 (933)
T 2jgd_A 743 EQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCS 821 (933)
T ss_dssp TTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEEC
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEc
Confidence 69999999999999999999985 64 899999999998875432221 233356777889998888 9999 56666
Q ss_pred chhHHHHHHHHHHHHhcCCCeee
Q 024237 247 SKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
|.+...+++|+++|+++ +++|
T Consensus 822 G~v~~~l~aa~~~l~~~--~v~V 842 (933)
T 2jgd_A 822 GKVYYDLLEQRRKNNQH--DVAI 842 (933)
T ss_dssp TTHHHHHHHHHHHTTCC--SEEE
T ss_pred hHHHHHHHHHHHHcccC--CeEE
Confidence 66656666666888765 5654
No 23
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-35 Score=308.20 Aligned_cols=215 Identities=20% Similarity=0.215 Sum_probs=178.7
Q ss_pred HHHHHhhcCCcEEEEecCCCCC--------------CCccccchhh------HhhhCCCCeeecccchhHHHHHHHHHhh
Q 024237 46 ALDEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGIGVGAAY 105 (270)
Q Consensus 46 ~L~~~~~~d~~iv~l~~Dl~~~--------------~g~~~~~~~~------~~~~gp~R~id~GIaE~~~vg~AaGlA~ 105 (270)
+..+++++|++|+++++|++.. +++|..+++| .+++||+||+|+||||++++|+|+|||+
T Consensus 771 a~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~ 850 (1113)
T 2xt6_A 771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSV 850 (1113)
T ss_dssp HHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHh
Confidence 3445599999999999999863 5667778899 7877799999999999999999999999
Q ss_pred cC--CccEEEeehhhHHHHH---HHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcch-HHHHH--ccCCCcE
Q 024237 106 YG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--ASVPGLK 177 (270)
Q Consensus 106 ~G--~~Pi~~~~~~~f~~ra---~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~-~~a~l--r~iPn~~ 177 (270)
.| .+|+++.+|++|+++| +||++++.. .+| + +++||+++.++|. .++|++||++ +|+++ +++|||+
T Consensus 851 ~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~-~k~--~--~~~~vv~~lp~G~-~G~G~~Hs~~~~E~~l~l~~~pnm~ 924 (1113)
T 2xt6_A 851 GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKW--G--QLSDVVLLLPHGH-EGQGPDHTSGRIERFLQLWAEGSMT 924 (1113)
T ss_dssp HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHH--C--CCCCCEEEEECCC-SSSCTTSSCCCHHHHHHHCCTTSCE
T ss_pred cCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH-HHh--C--CCCCEEEEeCCCC-CCCChhhhcccHHHHHhcCCCCCcE
Confidence 99 5668899999999998 999999863 233 2 5899999999776 4699999886 88877 9999999
Q ss_pred EEccCCHHHHHHHHHHhHhCC--CCeEEeecccccCCCCCCccc--ccCCCccccCCceEE---eEeCCcE--EEEEech
Q 024237 178 VLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSAE--VLDSSFCLPIGKAKI---EREGKDV--TITAFSK 248 (270)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~--~P~~ir~~~~~~~~~~~~~~~--~~~~~~~~~~Gk~~v---l~~G~dv--tIva~G~ 248 (270)
|++|+|+.|++.+|+.++..+ +|+||++||.|||.+.+.++. ..++.+..++|++.+ +++|+|| |||++|.
T Consensus 925 V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~ 1004 (1113)
T 2xt6_A 925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGK 1004 (1113)
T ss_dssp EECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECST
T ss_pred EEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECH
Confidence 999999999999999988754 899999999999765432221 111234447899987 8899999 9999999
Q ss_pred hHHHHHHHHHHHHhcC-CCeee
Q 024237 249 IVGLSLKAAEILAKEG-ISAEV 269 (270)
Q Consensus 249 ~v~~al~Aa~~L~~~G-i~~~V 269 (270)
+ ..++++++ +++| ++++|
T Consensus 1005 ~-~~~l~aa~--~~~g~i~v~V 1023 (1113)
T 2xt6_A 1005 I-YYELAARK--AKENREDVAI 1023 (1113)
T ss_dssp H-HHHHHHHH--HHHTCTTEEE
T ss_pred H-HHHHHHHH--HhCCCCCEEE
Confidence 8 78888777 6778 99887
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=8.1e-32 Score=270.86 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=171.2
Q ss_pred cchHHHHHHHHHHHHhhcCCc-EEEEecCCCCCCCccccchhhHhh--------hC--C--------CCeeecccchhHH
Q 024237 36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEK--------YG--P--------ERVLDTPITEAGF 96 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~-iv~l~~Dl~~~~g~~~~~~~~~~~--------~g--p--------~R~id~GIaE~~~ 96 (270)
+...+.+++++|.++++++|+ ++++++|+..|+.+. .|.+. |. | +|||+ ||+||+|
T Consensus 428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~----~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M 502 (845)
T 3ahc_A 428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLN----ATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQC 502 (845)
T ss_dssp EECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCG----GGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHH----HHHhhcccccccccccCCcccccCCCCcEee-eecHHHH
Confidence 455677889999999999999 999999998777653 33333 22 4 79999 9999999
Q ss_pred HHHHHHHhhcCCccEEEeehhhHH--HHHHHH----HHHHHhhccccCCCCCCC-CEEEEec-CCCCC-CCCCCCcch--
Q 024237 97 TGIGVGAAYYGLKPVVEFMTFNFS--MQAIDH----IINSAAKSNYMSSGQISV-PIVFRGP-NGAAA-GVGAQHSHC-- 165 (270)
Q Consensus 97 vg~AaGlA~~G~~Pi~~~~~~~f~--~ra~dq----i~~~~a~~~~~sg~~~~~-pvi~~~~-~G~~~-~~G~tH~~~-- 165 (270)
+++++|||+.|.+||+.+|.+|+. .|+++| ||++++...|+. ++ +|++++. +|... .+|+|| |+
T Consensus 503 ~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~----~~~~v~~v~Th~si~~GeDGpTH-Q~~e 577 (845)
T 3ahc_A 503 EGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK----PISSVNLLVSSHVWRQDHNGFSH-QDPG 577 (845)
T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSC----CCBCEEEEEESCGGGCTTTCGGG-CCCT
T ss_pred HHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcc----cCCceEEEEeCCceeecCCCCCC-CCcH
Confidence 999999999999999999877766 899999 999855544432 34 5777755 56654 499999 76
Q ss_pred HHHH--Hc---cCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee-cccccCCCCCCcccccCCCc---cccCCceEEe-
Q 024237 166 YAAW--YA---SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE-NELLYGESFPVSAEVLDSSF---CLPIGKAKIE- 235 (270)
Q Consensus 166 ~~a~--lr---~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~-~~~~~~~~~~~~~~~~~~~~---~~~~Gk~~vl- 235 (270)
++.+ ++ .+|||+|+.|+|++|+..+++.+++..+|+|++. +|. +. +.+++.++ .+..|++.+.
T Consensus 578 ~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq----~~---p~~~~~~~a~~~~~~G~~v~~~ 650 (845)
T 3ahc_A 578 VTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQ----PA---PTWVTLDEARAELEAGAAEWKW 650 (845)
T ss_dssp HHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCS----CE---EECSCHHHHHHHHHHSEEECTT
T ss_pred HHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCC----CC---CccCCchhhhhhhcCCeEEEEe
Confidence 4443 33 6799999999999999999999999988888875 432 22 23433332 4667877766
Q ss_pred --Ee--C--CcEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 236 --RE--G--KDVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 236 --~~--G--~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++ | .||+||++|+ ++.+||+||++|+++||+++|
T Consensus 651 as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRV 691 (845)
T 3ahc_A 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKV 691 (845)
T ss_dssp TCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEE
Confidence 46 6 8999999995 567799999999999999998
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.65 E-value=4.6e-16 Score=146.14 Aligned_cols=215 Identities=20% Similarity=0.196 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHh---hhCCCCeeecccchhHHHHHHHHHhhcCCccEE
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV 112 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~---~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~ 112 (270)
.++-.+|+.+++.. .+.+++..-+- ..++. +.+.|.+ ++ .-+|+.+. +|+.++++|.|.|+.|.+|++
T Consensus 22 ~~~GneAva~~~~~---ag~~~v~~yPg-tP~t~---i~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~ 92 (395)
T 1yd7_A 22 FIQGDEAIARAAIL---AGCRFYAGYPI-TPASE---IFEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMT 92 (395)
T ss_dssp EEEHHHHHHHHHHH---HTCCEEEECCB-TTTBC---HHHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEE
T ss_pred EeEHHHHHHHHHHH---cCCCEEEEEEC-cchHH---HHHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEE
Confidence 46778888888765 45556665541 11222 2244444 55 46899988 999999999999999999999
Q ss_pred EeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCC----CCCcchHHHHHccCC--CcEEEccCCHHH
Q 024237 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG----AQHSHCYAAWYASVP--GLKVLSPYSSED 186 (270)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G----~tH~~~~~a~lr~iP--n~~V~~P~d~~e 186 (270)
++..+. +.+++|||.+ ++. .++|++++...+...+.| ..|++...+.+.++| ++.++.|++++|
T Consensus 93 ~ts~~G-~~~~~d~l~~-aa~--------~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qe 162 (395)
T 1yd7_A 93 ATSGPG-FSLMQENIGY-AVM--------TETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQE 162 (395)
T ss_dssp EEETTH-HHHHTTTCC-------------CCCCEEEEEEC--------------------------CCCCEEECCCSHHH
T ss_pred EeCchH-HHHHHHHHHH-HHh--------cCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHH
Confidence 998665 4569999976 332 589999987653322212 234444457778877 999999999999
Q ss_pred HHHHHHHhH----hCCCCeEEeecccccCCC----CCCccccc----------C---CCccc--cC--------Cc----
Q 024237 187 ARGLLKAAI----RDPDPVVFLENELLYGES----FPVSAEVL----------D---SSFCL--PI--------GK---- 231 (270)
Q Consensus 187 ~~~~l~~a~----~~~~P~~ir~~~~~~~~~----~~~~~~~~----------~---~~~~~--~~--------Gk---- 231 (270)
+..++.+|+ +.+.||++++++.++... .+..+.+. + .+|.. +. |.
T Consensus 163 a~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 242 (395)
T 1yd7_A 163 AFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRT 242 (395)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC--------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCcee
Confidence 999999998 567899999875332110 00000000 0 00111 00 00
Q ss_pred ------------------------------------------eEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 232 ------------------------------------------AKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 232 ------------------------------------------~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.++.++|.|++||++|+++..|++|++.|+++|++++|
T Consensus 243 ~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~v 322 (395)
T 1yd7_A 243 YVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGL 322 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEE
Confidence 02234688999999999999999999999999998876
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.21 E-value=3e-10 Score=119.60 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=122.2
Q ss_pred hhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCC--CCC
Q 024237 80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAG 157 (270)
Q Consensus 80 ~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~--~~~ 157 (270)
.||..+.++...+|..+++++.|.|..|.++++.+-.+ =+..+.|.|.. ++. ..+|++++..... +.+
T Consensus 50 ~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~-Gl~lm~e~l~~-~ag--------~~~P~Vi~va~R~g~~~g 119 (1231)
T 2c42_A 50 IFGQTLTIREMQSEAGAAGAVHGALAAGALTTTFTASQ-GLLLMIPNMYK-ISG--------ELLPGVFHVTARAIAAHA 119 (1231)
T ss_dssp TTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHH-HHHHHHHHHHH-HHH--------TTCCCEEEEEECCCCSSS
T ss_pred hcCCceEEEecCChHHHHHHHHHHHHcCChHhhhccHH-HHHHHHHHHHH-HhC--------CCCCEEEEECCCCccCCC
Confidence 47777899999999999999999999999999987543 34455577643 333 3689999876422 212
Q ss_pred --CCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHh----HhCCCCeEEeecccccCC---CCCCcc--cc------
Q 024237 158 --VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFLENELLYGE---SFPVSA--EV------ 220 (270)
Q Consensus 158 --~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a----~~~~~P~~ir~~~~~~~~---~~~~~~--~~------ 220 (270)
..+.|+ +.+....+|+.|++|++++|+..+...| .+...||+++.+..++.. ++...+ .+
T Consensus 120 lsi~~~hs---d~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~ 196 (1231)
T 2c42_A 120 LSIFGDHQ---DIYAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQ 196 (1231)
T ss_dssp BCCSCCSH---HHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCH
T ss_pred CcCCCchh---hHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcCh
Confidence 234453 2345677999999999999999988887 556889999876532211 100000 00
Q ss_pred ----------cCCCccccCCc------------------------------------------eE-EeEeCCcEEEEEec
Q 024237 221 ----------LDSSFCLPIGK------------------------------------------AK-IEREGKDVTITAFS 247 (270)
Q Consensus 221 ----------~~~~~~~~~Gk------------------------------------------~~-vl~~G~dvtIva~G 247 (270)
.+.+.+++.|. .. .-.++.|++||++|
T Consensus 197 ~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~G 276 (1231)
T 2c42_A 197 KALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMG 276 (1231)
T ss_dssp HHHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECS
T ss_pred hhhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeC
Confidence 00000111121 12 22457899999999
Q ss_pred hhHHHHHHHHHHHHhcCCCeee
Q 024237 248 KIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++...+.+|++.|+++|+++.|
T Consensus 277 s~~~~~~eAv~~L~~~G~kvgv 298 (1231)
T 2c42_A 277 SSCETIEEVINHLAAKGEKIGL 298 (1231)
T ss_dssp THHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEE
Confidence 9999999999999999999876
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=97.48 E-value=0.00012 Score=56.92 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=31.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
+|.|++||++|+++..|++|++.|+++|+++.|
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~v 44 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANL 44 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEE
Confidence 678999999999999999999999999999876
No 28
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=92.91 E-value=2.8 Score=40.17 Aligned_cols=158 Identities=17% Similarity=0.112 Sum_probs=89.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~ 113 (270)
.+++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+ . +.+.+=...-|+++.-+|.|+|+..-+| ++.
T Consensus 19 ~~~~~a~~lv~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~-~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~ 89 (565)
T 2nxw_A 19 SHMKLAEALLRALKDR---GAQAMFGIP--GDF--ALPFFKVAEE-T-QILPLHTLSHEPAVGFAADAAARYSSTLGVAA 89 (565)
T ss_dssp CCCBHHHHHHHHHHHT---TCCCEEECC--CGG--GHHHHHHHHH-H-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCcCHHHHHHHHHHHc---CCCEEEECC--Ccc--hHHHHHHHHh-C-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 4567777777777653 333344443 211 1233344543 3 4445567899999999999999984445 443
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCC--CCc-ch---HHHHHccCCCcEEEccCCHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS-HC---YAAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~--tH~-~~---~~a~lr~iPn~~V~~P~d~~ 185 (270)
..+..-..-++--|-+ +.+ .++||+++..+-.. .+.+. +|. |. ...+++.+--..... .+++
T Consensus 90 ~TsGpG~~N~~~gv~~-A~~--------~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v-~~~~ 159 (565)
T 2nxw_A 90 VTYGAGAFNMVNAVAG-AYA--------EKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARL-DDPA 159 (565)
T ss_dssp ECTTHHHHTTHHHHHH-HHH--------TTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEEC-CCTT
T ss_pred ECCCCCHHHHHHHHHH-HHh--------hCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEe-CCHH
Confidence 3333344455556643 322 58999998654211 22232 232 22 247898886654443 3444
Q ss_pred H----HHHHHHHhHhCCCCeEEeecccccC
Q 024237 186 D----ARGLLKAAIRDPDPVVFLENELLYG 211 (270)
Q Consensus 186 e----~~~~l~~a~~~~~P~~ir~~~~~~~ 211 (270)
+ +..+++.+...++||+|..|+.+..
T Consensus 160 ~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~ 189 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQSRPVYLEIPRNMVN 189 (565)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECChhhhc
Confidence 4 4445555554579999988765443
No 29
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.06 E-value=0.44 Score=46.18 Aligned_cols=155 Identities=12% Similarity=-0.021 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEEe
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVEF 114 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~ 114 (270)
+++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+.-..=|++ ...-|++++-+|.|+|+...+| +|..
T Consensus 3 ~~~~a~~lv~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~~~~~i~~i-~~~~E~~Aa~~A~GyAr~tgk~~v~~~ 74 (590)
T 1v5e_A 3 KINIGLAVMKILES---WGADTIYGIP--SGT--LSSLMDAMGEEENNVKFL-QVKHEEVGAMAAVMQSKFGGNLGVTVG 74 (590)
T ss_dssp EEEHHHHHHHHHHH---TTCCEEEECC--CTT--THHHHTTSSSTTCCCEEE-ECSSHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CccHHHHHHHHHHH---cCCCEEEEec--CCc--hHHHHHHHHhcCCCCeEE-eeCCHHHHHHHHHHHHHHHCCCEEEEe
Confidence 35556666666554 3445555544 211 112223332210011333 4689999999999999985555 4444
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
.+..-..-++--|-+ + +. ..+||+++..+-... +.+..+......+++.+-.. .+.+.+++++...++
T Consensus 75 tsGpG~~N~~~gl~~-A-~~-------~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~ 144 (590)
T 1v5e_A 75 SGGPGASHLINGLYD-A-AM-------DNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY-NRRVAYAEQLPKLVD 144 (590)
T ss_dssp CTTHHHHTTHHHHHH-H-HH-------HTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSE-EEECCSGGGHHHHHH
T ss_pred CcChHHHHHHHHHHH-H-Hh-------cCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccE-EEEeCCHHHHHHHHH
Confidence 444555666677754 3 32 489999986542221 22222211224899998665 667778887777777
Q ss_pred HhHh----C-CCCeEEeecccc
Q 024237 193 AAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 193 ~a~~----~-~~P~~ir~~~~~ 209 (270)
.|++ . ++||+| .|...
T Consensus 145 ~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 145 EAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHHHhcCCCceEEE-Eccch
Confidence 6654 3 489999 88654
No 30
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.83 E-value=3.2 Score=39.65 Aligned_cols=154 Identities=19% Similarity=0.088 Sum_probs=90.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~ 113 (270)
.+++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+ . +=|++. ..-|++++-+|.|+|+..-+| ++.
T Consensus 2 ~~~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~-~-~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~ 71 (563)
T 2uz1_A 2 AMITGGELVVRTLIKA---GVEHLFGLH--GAH--IDTIFQACLD-H-DVPIID-TRHEAAAGHAAEGYARAGAKLGVAL 71 (563)
T ss_dssp CEEEHHHHHHHHHHHH---TCCCEEECC--CGG--GHHHHHHHHH-H-TCCEEE-CSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CccCHHHHHHHHHHHC---CCCEEEECC--CCc--hHHHHHHHHh-c-CCcEEe-eCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4466777777776654 333444433 211 1133344443 2 235555 689999999999999984444 444
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCc-chHHHHHccCCCcEEEccCCHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGL 190 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~-~~~~a~lr~iPn~~V~~P~d~~e~~~~ 190 (270)
.-+..-...++--|-+ + +. .++||+++..+-.. .+.|..|. .....+++.+--. .+...+++++...
T Consensus 72 ~TsGpG~~N~~~~l~~-A-~~-------~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~ 141 (563)
T 2uz1_A 72 VTAGGGFTNAVTPIAN-A-WL-------DRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRL 141 (563)
T ss_dssp ECTTHHHHTTHHHHHH-H-HH-------HTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHH
T ss_pred EccCccHHHHHHHHHH-H-Hh-------cCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHH
Confidence 4333345556666654 3 32 58999998654222 22333232 1234899988654 4455677777766
Q ss_pred HHHhHh----C-CCCeEEeeccc
Q 024237 191 LKAAIR----D-PDPVVFLENEL 208 (270)
Q Consensus 191 l~~a~~----~-~~P~~ir~~~~ 208 (270)
++.|++ . ++||+|-.|..
T Consensus 142 l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 142 VMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHhcCCCCceEEEEeCHH
Confidence 666554 2 58999987654
No 31
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.62 E-value=1.3 Score=43.88 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh
Q 024237 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (270)
Q Consensus 41 ~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~ 117 (270)
..+.+.|.+.+...++-++++.|.+... .+. ..-+.-.. |.+|+..|. +=...++.|.|+++.. -++++++.--
T Consensus 464 ~~v~~~L~~~l~~~~~~~iv~~~vg~~~-~~~-~~~~~~~~-p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GD 540 (677)
T 1t9b_A 464 QTVIKKLSKVANDTGRHVIVTTGVGQHQ-MWA-AQHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGD 540 (677)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECSSHHH-HHH-HHHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEH
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCchHH-HHH-HHhcccCC-CCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEee
Confidence 3455666666654233344455654211 111 01121133 678888765 2233677888888763 3555544322
Q ss_pred -hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC----------C--CCCC-CcchHHHHHccCCCcEEEcc
Q 024237 118 -NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA----------G--VGAQ-HSHCYAAWYASVPGLKVLSP 181 (270)
Q Consensus 118 -~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~----------~--~G~t-H~~~~~a~lr~iPn~~V~~P 181 (270)
.|.+ .+..|- .++. .++|++++. .+ +... . .+.. +...+..+.++. |+.-+..
T Consensus 541 Gsf~~-~~~eL~-ta~~--------~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v 609 (677)
T 1t9b_A 541 ASFNM-TLTELS-SAVQ--------AGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRV 609 (677)
T ss_dssp HHHHH-HGGGHH-HHHH--------HTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEE
T ss_pred hHHhc-cHHHHH-HHHH--------hCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEE
Confidence 2332 344443 3444 367766543 33 2210 0 1111 212345677776 7888888
Q ss_pred CCHHHHHHHHHHhHhCCCCeEEe
Q 024237 182 YSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 182 ~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.+|+..+++.+++.++|++|-
T Consensus 610 ~~~~el~~al~~a~~~~gp~lIe 632 (677)
T 1t9b_A 610 KKQEELDAKLKEFVSTKGPVLLE 632 (677)
T ss_dssp CSHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEE
Confidence 99999999999999989999884
No 32
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.17 E-value=1.4 Score=42.50 Aligned_cols=152 Identities=18% Similarity=0.096 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhcCCcc-EEEe
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKP-VVEF 114 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~ 114 (270)
++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+ . ++ |++ ...-|++++.+|.|+|+..-+| ++..
T Consensus 12 ~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~-~-~~i~~i-~~~~E~~Aa~~A~Gyar~tg~p~v~~~ 81 (590)
T 1ybh_A 12 RKGADILVEALER---QGVETVFAYP--GGA--SMEIHQALTR-S-SSIRNV-LPRHEQGGVFAAEGYARSSGKPGICIA 81 (590)
T ss_dssp EEHHHHHHHHHHT---TTCCEEEECC--CGG--GHHHHHHHHH-C-SSCEEC-CCSSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred ccHHHHHHHHHHH---cCCCEEEEcC--CCc--hHHHHHHHhc-c-CCccEE-eeCCHHHHHHHHHHHHHHHCCCEEEEe
Confidence 5566666666554 3344555444 211 1123344432 2 22 332 4679999999999999984444 4433
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
-+..-..-++--|-+ +-+ .++||+++..+-.. .+.|..+......+++.+--. .+...+++++..+++
T Consensus 82 TsGpG~~N~~~gv~~-A~~--------~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~ 151 (590)
T 1ybh_A 82 TSGPGATNLVSGLAD-ALL--------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIE 151 (590)
T ss_dssp CTTHHHHTTHHHHHH-HHH--------HTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHH
T ss_pred ccCchHHHHHHHHHH-HHh--------hCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCe-EEecCCHHHHHHHHH
Confidence 333445555666643 322 58999998653222 223333322335899988765 455677888888888
Q ss_pred HhHhC-----CCCeEEeeccc
Q 024237 193 AAIRD-----PDPVVFLENEL 208 (270)
Q Consensus 193 ~a~~~-----~~P~~ir~~~~ 208 (270)
.|++. +|||||-.|..
T Consensus 152 ~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 152 EAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhCCCceEEEEeCcc
Confidence 87752 58999987654
No 33
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=90.00 E-value=5.2 Score=38.62 Aligned_cols=156 Identities=12% Similarity=-0.025 Sum_probs=85.8
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~ 113 (270)
.+++..+++.+.|.+. .-+.|+..+ +.. ...+.+.|.+.-..=|++ ...-|+++.-+|-|+|+.--+| +|.
T Consensus 9 ~~~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~dal~~~~~~i~~i-~~~hE~~Aa~aA~GyAr~tg~~gv~~ 80 (603)
T 4feg_A 9 TNILAGAAVIKVLEAW---GVDHLYGIP--GGS--INSIMDALSAERDRIHYI-QVRHEEVGAMAAAADAKLTGKIGVCF 80 (603)
T ss_dssp CEEEHHHHHHHHHHHT---TCCEEEECC--CGG--GHHHHHHHHHTTTTSEEE-ECSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CeeeHHHHHHHHHHHC---CCCEEEEeC--CCc--hHHHHHHHHhccCCCeEE-EecChHHHHHHHHHHHHHhCCceEEE
Confidence 4567777777766543 344455443 211 113334454321011444 4679999999999999874444 443
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHH---
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR--- 188 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~--- 188 (270)
..+..=..-++--|-+ + +. .++||+++..+-... +.+..+......+++.+--.... ..+++++.
T Consensus 81 ~TsGpG~~N~~~gia~-A-~~-------~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i 150 (603)
T 4feg_A 81 GSAGPGGTHLMNGLYD-A-RE-------DHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVT-AVNAATLPHVI 150 (603)
T ss_dssp ECTTHHHHTTHHHHHH-H-HH-------TTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEE-CCCSTTHHHHH
T ss_pred ecCCchHHHHHHHHHH-H-HH-------cCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEE-cCCHHHHHHHH
Confidence 3333444555566643 3 22 589999986432221 22222211224788877554443 33444444
Q ss_pred -HHHHHhHhCCCCeEEeeccc
Q 024237 189 -GLLKAAIRDPDPVVFLENEL 208 (270)
Q Consensus 189 -~~l~~a~~~~~P~~ir~~~~ 208 (270)
.+++.+....+||||-.|..
T Consensus 151 ~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 151 DEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp HHHHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHhcCCCCEEEEeChh
Confidence 45555555589999987654
No 34
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.66 E-value=5.5 Score=38.51 Aligned_cols=154 Identities=13% Similarity=-0.023 Sum_probs=91.9
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEE-
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE- 113 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~- 113 (270)
+++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+ . ++=-+-...-|++++-+|.|+|+. |.+|-++
T Consensus 26 ~~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~-~-~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~ 96 (616)
T 2pan_A 26 KMRAVDAAMYVLEK---EGITTAFGVP--GAA--INPFYSAMRK-H-GGIRHILARHVEGASHMAEGYTRATAGNIGVCL 96 (616)
T ss_dssp EEEHHHHHHHHHHH---TTCCEEEECC--CGG--GHHHHHHHHH-H-CCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred cCcHHHHHHHHHHH---CCCCEEEECC--CCc--cHHHHHHHHh-c-CCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 35667777776643 3455555554 211 1123344433 3 332233568999999999999998 5666543
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l 191 (270)
..+..-..-++.-|-+ +.+ .++||+++..+-.. .+.|..+......+++.+--... ...+++++..++
T Consensus 97 ~TsGpG~~N~~~~l~~-A~~--------~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l 166 (616)
T 2pan_A 97 GTSGPAGTDMITALYS-ASA--------DSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRVL 166 (616)
T ss_dssp ECSTHHHHTSHHHHHH-HHH--------TTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHH
T ss_pred eCCCchHHHHHHHHHH-HHh--------cCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHHH
Confidence 3233444566777754 433 58999998653222 12333221223588888876654 446678888877
Q ss_pred HHhHhC-----CCCeEEeeccc
Q 024237 192 KAAIRD-----PDPVVFLENEL 208 (270)
Q Consensus 192 ~~a~~~-----~~P~~ir~~~~ 208 (270)
+.|++. ++||+|-.|..
T Consensus 167 ~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 167 QQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHhcCCCceEEEEcchh
Confidence 777652 68999977643
No 35
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.34 E-value=4 Score=38.97 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=85.1
Q ss_pred HHHHHHHHhhc-CCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhH
Q 024237 43 LNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNF 119 (270)
Q Consensus 43 ~~~~L~~~~~~-d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f 119 (270)
.++.|.+.+++ .-+.|+..+ +.. ...+.+.+.+ . ++ |++- -.-|+++.-+|-|+|+.--+| +|..-+..=
T Consensus 10 ~a~~lv~~L~~~GV~~vFg~P--G~~--~~~l~dal~~-~-~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG 82 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICIAP--GSR--STLLTLAAAE-N-SAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTA 82 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEECC--CTT--SHHHHHHHHH-C-TTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred HHHHHHHHHHHCCCCEEEEcC--CCC--cHHHHHHHhh-C-CCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcH
Confidence 44555555543 344455444 211 1233344543 2 33 5554 568999999999999974444 444333444
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcchH-HHHHccCCCcEEEccCC-----HHHHHHHH
Q 024237 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCY-AAWYASVPGLKVLSPYS-----SEDARGLL 191 (270)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~~-~a~lr~iPn~~V~~P~d-----~~e~~~~l 191 (270)
...++--|-+ +-+ ..+||++++.+-.. .+.|..| ..+ ..+++.+--.....+.. ++++..++
T Consensus 83 ~~N~~~gia~-A~~--------d~vPll~itG~~~~~~~g~~~~Q-~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i 152 (556)
T 3hww_A 83 VANLYPALIE-AGL--------TGEKLILLTADRPPELIDCGANQ-AIRQPGMFASHPTHSISLPRPTQDIPARWLVSTI 152 (556)
T ss_dssp HHTTHHHHHH-HHH--------HCCCEEEEEEECCGGGSSSSCTT-CCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHH
T ss_pred HHhhhHHHHH-HHH--------hCCCeEEEeCCCCHHHhccCCCc-cccHHHHHhhheeEEEecCCCcccccHHHHHHHH
Confidence 5555666643 322 58999998653222 1233322 222 47888877665554332 35688888
Q ss_pred HHhHhC--CCCeEEeecc
Q 024237 192 KAAIRD--PDPVVFLENE 207 (270)
Q Consensus 192 ~~a~~~--~~P~~ir~~~ 207 (270)
+.|+.. +|||||-.|.
T Consensus 153 ~~A~~~~r~GPV~i~iP~ 170 (556)
T 3hww_A 153 DHALGTLHAGGVHINCPF 170 (556)
T ss_dssp HHHHHSCCSSCEEEEEEC
T ss_pred HHHHhcCCCCCEEEeCCc
Confidence 888864 5899997764
No 36
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=89.22 E-value=8.9 Score=36.58 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEEee
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~ 115 (270)
++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.|.+.- .=|++- ..-|++++.+|.|+|+. | ..++..-
T Consensus 3 ~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~~~-~i~~i~-~~~E~~Aa~~A~Gyar~tg-~~v~~~T 72 (568)
T 2wvg_A 3 YTVGTYLAERLVQ---IGLKHHFAVA--GDY--NLVLLDNLLLNK-NMEQVY-CCNELNCGFSAEGYARAKG-AAAAVVT 72 (568)
T ss_dssp EEHHHHHHHHHHH---TTCSEEEECC--CTT--THHHHHHHHTCT-TSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred cCHHHHHHHHHHH---cCCCEEEeCC--CCc--cHHHHHHHhccC-CceEec-cCcHHHHHHHHHHHHHhhC-CeEEEEe
Confidence 4455555555544 3345555554 211 112334443321 125554 48999999999999987 7 3333333
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCC--CCc----ch-H-HHHHccCCCcEEEccCCHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS----HC-Y-AAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~--tH~----~~-~-~a~lr~iPn~~V~~P~d~~ 185 (270)
+..-..-++--|-+ + +. ..+||+++..+-.. .+.+. +|. +. + ..+++.+--.. +...+++
T Consensus 73 sGpG~~N~~~gia~-A-~~-------~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~ 142 (568)
T 2wvg_A 73 YSVGALSAFDAIGG-A-YA-------ENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAA-EAIYTPE 142 (568)
T ss_dssp TTTTHHHHHHHHHH-H-HH-------TTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCE-EEECSGG
T ss_pred CCCCHHHHHHHHHH-H-hh-------hCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEE-EEeCCHH
Confidence 33334445666654 3 32 58999998654222 12222 231 22 3 58999887664 4445566
Q ss_pred HHHHHHH----HhHhCCCCeEEeeccc
Q 024237 186 DARGLLK----AAIRDPDPVVFLENEL 208 (270)
Q Consensus 186 e~~~~l~----~a~~~~~P~~ir~~~~ 208 (270)
++...++ .+....+||+|..|..
T Consensus 143 ~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 143 EAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 5554444 4444469999987754
No 37
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=88.89 E-value=1.9 Score=41.41 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEEee
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVEFM 115 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~ 115 (270)
++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+ - .=|++. ..-|+++.-+|.|+|+..-+| +|...
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~-~-~i~~v~-~~~E~~Aa~~A~Gyar~tg~p~v~~~T 80 (566)
T 1ozh_A 11 AHGADLVVSQLEAQ---GVRQVFGIP--GAK--IDKVFDSLLD-S-SIRIIP-VRHEANAAFMAAAVGRITGKAGVALVT 80 (566)
T ss_dssp SCHHHHHHHHHHHH---TCCEEEEEC--CTT--THHHHHHGGG-S-SSEEEE-CSSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CcHHHHHHHHHHHC---CCCEEEEcC--CCc--hHHHHHHHHh-C-CCcEEE-eCCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 45567776666654 334444444 211 1123344433 1 225554 489999999999999974445 44443
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+..-...++--|-+ +-+ .++||+++..+-... +.+..|......+++.+.-.. +...+++++...++.
T Consensus 81 sGpG~~N~~~~l~~-A~~--------~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~ 150 (566)
T 1ozh_A 81 SGPGCSNLITGMAT-ANS--------EGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYA-IEVTAPDALAEVVSN 150 (566)
T ss_dssp STHHHHTTHHHHHH-HHH--------HTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEE-EECCSGGGHHHHHHH
T ss_pred cChHHHHHHHHHHH-HHh--------cCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheE-EEcCCHHHHHHHHHH
Confidence 34445555666643 322 489999986542222 222222122358999986554 445566666665555
Q ss_pred hH----hC-CCCeEEeecccc
Q 024237 194 AI----RD-PDPVVFLENELL 209 (270)
Q Consensus 194 a~----~~-~~P~~ir~~~~~ 209 (270)
|+ .. ++||+|..|..+
T Consensus 151 A~~~A~~~r~GPV~l~iP~dv 171 (566)
T 1ozh_A 151 AFRAAEQGRPGSAFVSLPQDV 171 (566)
T ss_dssp HHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHhcCCCCeEEEEeChhh
Confidence 44 33 589999877543
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=88.85 E-value=5.7 Score=38.21 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEEe
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVEF 114 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~ 114 (270)
.++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.|.+.-..=|++. ..-|+++.-+|-|+|+..-+| ++..
T Consensus 3 ~~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~~~~~i~~v~-~~hE~~Aa~~A~GyAr~tg~p~v~~~ 74 (589)
T 2pgn_A 3 IKRGADLIVEALEE---YGTEQVVGFI--GHT--SHFVADAFSKSHLGKRVIN-PATELGGAWMVNGYNYVKDRSAAVGA 74 (589)
T ss_dssp EEEHHHHHHHHHHH---TTCCEEEEEC--SGG--GHHHHHHHHTSTTSTTCBC-CSSHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CCcHHHHHHHHHHH---cCCCEEEEec--CCc--hHHHHHHHHhcCCCCeEEE-eCcHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45566666666554 3344444444 211 1123344433200124554 489999999999999984444 3333
Q ss_pred ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCC-CCCcchHHHHHccCCCcEEEccCCHHHHHHHH
Q 024237 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-AQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (270)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G-~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l 191 (270)
-+..-..-++--|-+ +-+ .++||+++..+-.. .+.| ..|...... ++.+--.. +...+++++...+
T Consensus 75 TsGpG~~N~~~gv~~-A~~--------~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~-~~v~~~~~~~~~i 143 (589)
T 2pgn_A 75 WHCVGNLLLHAAMQE-ART--------GRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARST-QRVERLDKVGEAI 143 (589)
T ss_dssp EEGGGGGGCHHHHHH-HHH--------TTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEE-EECCSGGGHHHHH
T ss_pred ecCchHHHHHHHHHH-HHh--------cCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEE-eecCCHHHHHHHH
Confidence 334444555666644 322 58999998654222 2334 333222237 88876544 4445666666666
Q ss_pred HHhHh----C-CCCeEEeeccc
Q 024237 192 KAAIR----D-PDPVVFLENEL 208 (270)
Q Consensus 192 ~~a~~----~-~~P~~ir~~~~ 208 (270)
+.|++ . ++||||..|..
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 144 HEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp HHHHHHHTSSSCCEEEEEEETH
T ss_pred HHHHHHHhcCCCccEEEEeCHh
Confidence 66553 3 58999987754
No 39
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=88.29 E-value=4.2 Score=38.95 Aligned_cols=152 Identities=13% Similarity=-0.040 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEEee
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVEFM 115 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~ 115 (270)
++..+++.+.|.+. .-+.|+..+ +... ...+.+.|. + =|++. ..-|+++.-+|-|+|+..-+| ++..-
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vfg~P--G~~~-~~~l~~al~---~-i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~T 80 (573)
T 2iht_A 12 PTAAHALLSRLRDH---GVGKVFGVV--GREA-ASILFDEVE---G-IDFVL-TRHEFTAGVAADVLARITGRPQACWAT 80 (573)
T ss_dssp CCHHHHHHHHHHHT---TCCEEEECC--CGGG-GTCCSCSST---T-CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred ccHHHHHHHHHHHC---CCCEEEEec--CCcc-hhHHHHHHc---C-CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 56677776666553 334455444 2110 112233343 1 24444 589999999999999985556 33333
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCC-CCCCcchHHHHHccCCCcEEEccCCHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGV-GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~-G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~ 192 (270)
+..-..-++--|-+ +.+ .++||+++..+-.. .+. +..|......+++.+--... ...+++++...++
T Consensus 81 sGpG~~N~~~~v~~-A~~--------~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~ 150 (573)
T 2iht_A 81 LGPGMTNLSTGIAT-SVL--------DRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAV-ELQRPHEITDLVD 150 (573)
T ss_dssp TTHHHHHHHHHHHH-HHH--------HTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHH
T ss_pred cCchHHHHHHHHHH-HHh--------hCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEE-EcCCHHHHHHHHH
Confidence 33445556666654 322 48999998654222 233 33332233589998875544 4456666666666
Q ss_pred HhHh----C-CCCeEEeecccc
Q 024237 193 AAIR----D-PDPVVFLENELL 209 (270)
Q Consensus 193 ~a~~----~-~~P~~ir~~~~~ 209 (270)
.|++ . ++||||..|...
T Consensus 151 ~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 151 SAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHHHTBSSCCCEEEEEEHHH
T ss_pred HHHHHHhcCCCceEEEEecchH
Confidence 6553 3 589999877543
No 40
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=88.10 E-value=1.8 Score=41.12 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=67.8
Q ss_pred cccchhHHHHHHHHHhhc-CCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcc-
Q 024237 89 TPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSH- 164 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~-G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~- 164 (270)
...-|++++.+|.|+|+. |...+|......-+.-++--|-+ + +. .++||+++..+-.. .+.|..+..
T Consensus 43 ~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~-A-~~-------~~~Pll~itg~~~~~~~~~~~~q~~~ 113 (528)
T 1q6z_A 43 LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN-A-WN-------SHSPLIVTAGQQTRAMIGVEALLTNV 113 (528)
T ss_dssp ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH-H-HH-------TTCCEEEEEEECCHHHHTTTCTTCCT
T ss_pred EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH-H-hh-------cCCCEEEEeCCCcccccCCCcccccc
Confidence 567999999999999998 54445544443445566667754 3 32 58999998653221 123333321
Q ss_pred hHHHHHccCCCcEEEccCCHHHHHHHHHHhH----hC-CCCeEEeeccc
Q 024237 165 CYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RD-PDPVVFLENEL 208 (270)
Q Consensus 165 ~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~----~~-~~P~~ir~~~~ 208 (270)
....+++.+--.. ..+.+++++...++.++ .. +|||||..|..
T Consensus 114 d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 114 DAANLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp TGGGSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred cHHHHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3347888876554 44455655555555544 33 57999987754
No 41
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.01 E-value=4.7 Score=38.56 Aligned_cols=155 Identities=14% Similarity=-0.013 Sum_probs=88.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~ 113 (270)
.+++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+ . .=|++. ..-|+++.-+|-|+|+...+| +|.
T Consensus 8 ~~~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~-~-~i~~i~-~~~E~~Aa~~A~GyAr~tg~pgv~~ 77 (568)
T 2c31_A 8 ELTDGFHVLIDALKMN---DIDTMYGVV--GIP--ITNLARMWQD-D-GQRFYS-FRHEQHAGYAASIAGYIEGKPGVCL 77 (568)
T ss_dssp CEEEHHHHHHHHHHHT---TCCEEEECC--CTT--THHHHHHHHH-T-TCEEEE-CSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CcccHHHHHHHHHHHc---CCCEEEEeC--CCc--cHHHHHHHHh-C-CCcEEE-eCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567777777776653 344455444 211 1223344433 2 235554 499999999999999984455 443
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--C--CCCCCcchHHHHHccCCCcEEEccCCHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~--~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~ 189 (270)
.-+..-...++-.|-+ +-+ .++||+++..+-... + .|..+......+++.+--.... ..+++++..
T Consensus 78 ~TsGpG~~N~~~~i~~-A~~--------~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~-v~~~~~~~~ 147 (568)
T 2c31_A 78 TVSAPGFLNGVTSLAH-ATT--------NCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFR-INSIKDIPI 147 (568)
T ss_dssp ECSHHHHHHHHHHHHH-HHH--------HTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEE-CCSGGGHHH
T ss_pred EcCCccHHHHHHHHHH-HHh--------cCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeee-cCCHHHHHH
Confidence 3333444555666643 322 589999986532221 1 2332212234888888665444 445555555
Q ss_pred HHHHh----Hh-CCCCeEEeecccc
Q 024237 190 LLKAA----IR-DPDPVVFLENELL 209 (270)
Q Consensus 190 ~l~~a----~~-~~~P~~ir~~~~~ 209 (270)
.++.| .. .+|||||-.|..+
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~dv 172 (568)
T 2c31_A 148 GIARAVRTAVSGRPGGVYVDLPAKL 172 (568)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEETHH
T ss_pred HHHHHHHHhcCCCCceEEEeCCHHH
Confidence 55554 43 4689999877543
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=87.96 E-value=10 Score=36.07 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=87.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCcc-EEE
Q 024237 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKP-VVE 113 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~P-i~~ 113 (270)
..++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+ . .=|++. ..-|+++.-+|-|+|+...+| ++.
T Consensus 6 ~~~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~-~-~i~~i~-~~hE~~Aa~~A~Gyar~tg~pgv~~ 75 (564)
T 2q28_A 6 QMTDGMHIIVEALKQN---NIDTIYGVV--GIP--VTDMARHAQA-E-GIRYIG-FRHEQSAGYAAAASGFLTQKPGICL 75 (564)
T ss_dssp CEEEHHHHHHHHHHHT---TCCEEEECC--CTT--THHHHHHHHH-T-TCEEEE-CSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred ccCcHHHHHHHHHHHc---CCCEEEECC--Ccc--hHHHHHHHHh-C-CCcEEe-eCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456777776666543 344455444 211 1223344432 2 235555 489999999999999985555 433
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--C--CCCCCcchHHHHHccCCCcEEEccCCHHHHHH
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~--~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~ 189 (270)
+-+..-...++-.|-+ +-+ .++||+++..+-... + .|..+......+++.+--..... .+++++..
T Consensus 76 ~TsGpG~~N~~~gi~~-A~~--------~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~ 145 (564)
T 2q28_A 76 TVSAPGFLNGLTALAN-ATV--------NGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRV-NQPQDLGI 145 (564)
T ss_dssp ECSHHHHHHHHHHHHH-HHH--------HTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEEC-CSGGGHHH
T ss_pred EccCchHHHHHHHHHH-HHh--------cCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeec-CCHHHHHH
Confidence 3333444455556643 322 589999986542221 1 23322122348888886655444 45555555
Q ss_pred HHHHhH----h-CCCCeEEeecccc
Q 024237 190 LLKAAI----R-DPDPVVFLENELL 209 (270)
Q Consensus 190 ~l~~a~----~-~~~P~~ir~~~~~ 209 (270)
.++.|+ . .+|||||-.|..+
T Consensus 146 ~i~~A~~~A~~~~~GPV~l~iP~dv 170 (564)
T 2q28_A 146 ALARAIRVSVSGRPGGVYLDLPANV 170 (564)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCHHH
Confidence 555544 3 4689999877543
No 43
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=87.21 E-value=2.5 Score=41.72 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=72.1
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~t 161 (270)
|++ ...-|++++-+|-|+|+.--+| +|..-+..-...++--|-+ +-+ .++||+++..+-.. .+.|..
T Consensus 122 ~~v-~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~-A~~--------d~vPllvItG~~~~~~~g~~a~ 191 (677)
T 1t9b_A 122 NFV-LPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMAD-AFA--------DGIPMVVFTGQVPTSAIGTDAF 191 (677)
T ss_dssp EEE-CCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHH-HHH--------HTCCEEEEEEECCTTTTTSCCT
T ss_pred eEE-EeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHH-HHH--------cCCCEEEEeCCCChhhcCCCCc
Confidence 444 4689999999999999984444 4443334445556666643 322 58999998653222 223333
Q ss_pred CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh-----CCCCeEEeecccc
Q 024237 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~-----~~~P~~ir~~~~~ 209 (270)
+......+++.+--.... ..+++++...++.|++ .+|||||-.|+.+
T Consensus 192 Q~~Dq~~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~Dv 243 (677)
T 1t9b_A 192 QEADVVGISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPKDV 243 (677)
T ss_dssp TCCCHHHHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred cccCHHHHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHHH
Confidence 312234888888655444 4577888877777765 3689999877543
No 44
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.71 E-value=8.2 Score=36.99 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=65.5
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC--CCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~--~~G~t 161 (270)
|++- ..-|+++.-+|-|+|+.--+| +|...+..=...++--|-+ + +. ..+||++++.+-... +.|..
T Consensus 51 ~~i~-~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~-A-~~-------d~vPll~itG~~p~~~~g~~~~ 120 (578)
T 3lq1_A 51 KIYV-DVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAE-A-NL-------SQIPLIVLTADRPHELRNVGAP 120 (578)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHH-H-HH-------TTCCEEEEEEECCGGGTTSSCT
T ss_pred eEEE-ecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHH-H-Hh-------cCCCeEEEeCCCCHHhhcCCCC
Confidence 5554 459999999999999984444 4433333445555556643 3 32 589999986532221 22332
Q ss_pred CcchHHHHHccCCCcEEE--ccCCHH--------HHHHHHHHhHh-CCCCeEEeecc
Q 024237 162 HSHCYAAWYASVPGLKVL--SPYSSE--------DARGLLKAAIR-DPDPVVFLENE 207 (270)
Q Consensus 162 H~~~~~a~lr~iPn~~V~--~P~d~~--------e~~~~l~~a~~-~~~P~~ir~~~ 207 (270)
|......+++.+--.... .|.+.. .+..+++.|.. .+|||+|-.|.
T Consensus 121 Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 211223777776555444 355533 34455555554 37999997664
No 45
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=86.49 E-value=5.4 Score=37.96 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhcCCcc-EEEee
Q 024237 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFM 115 (270)
Q Consensus 38 ~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~ 115 (270)
+..+++.+.|.+ ..-+-|+..+ +.. ...+.+.|.+ . ++ |++ .-.-|+++.-+|-|+|+..-+| ++...
T Consensus 4 ~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~dal~~-~-~~i~~i-~~~~E~~Aa~~A~GyAr~tg~~~v~~~T 73 (549)
T 3eya_A 4 TVAAYIAKTLES---AGVKRIWGVT--GDS--LNGLSDSLNR-M-GTIEWM-STRHEEVAAFAAGAEAQLSGELAVCAGS 73 (549)
T ss_dssp BHHHHHHHHHHH---TTCCEEEECC--CGG--GHHHHHHHHH-H-CSSEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred cHHHHHHHHHHH---CCCCEEEEcC--CCc--hHHHHHHHHh-c-CCCeEE-EeCChHHHHHHHHHHHHHhCCCEEEEeC
Confidence 445555555443 3344444443 211 1123344443 3 22 444 4579999999999999974445 43333
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~ 193 (270)
+..=..-++--|-+ + +. .++||+++..+-.. .+.|..|......+++.+--... ...+++++...++.
T Consensus 74 sGpG~~N~~~gi~~-A-~~-------~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~ 143 (549)
T 3eya_A 74 CGPGNLHLINGLFD-C-HR-------NHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE-LVSSPEQIPQVLAI 143 (549)
T ss_dssp TTHHHHTTHHHHHH-H-HH-------TTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEE-ECCSGGGHHHHHHH
T ss_pred CCCcHhhhHHHHHH-H-Hh-------hCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEE-EeCCHHHHHHHHHH
Confidence 33444555666643 3 22 58999998654222 22333332233588888865443 44456655555554
Q ss_pred ----hHhCCCCeEEeeccc
Q 024237 194 ----AIRDPDPVVFLENEL 208 (270)
Q Consensus 194 ----a~~~~~P~~ir~~~~ 208 (270)
+....+||||-.|..
T Consensus 144 A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 144 AMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHHHHHHTTSEEEEEEEHH
T ss_pred HHHHHhhCCCCEEEEeChh
Confidence 444579999987654
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=85.42 E-value=5.7 Score=37.89 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCC-CeeecccchhHHHHHHHHHhhc-CCccEEE
Q 024237 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYY-GLKPVVE 113 (270)
Q Consensus 36 ~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~-R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~ 113 (270)
+++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+ . ++ |++- ..-|++++-+|.|+|+. | .+++.
T Consensus 3 ~~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~-~-~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~ 71 (563)
T 2vk8_A 3 EITLGKYLFERLKQ---VNVNTVFGLP--GDF--NLSLLDKIYE-V-EGMRWAG-NANELNAAYAADGYARIKG-MSCII 71 (563)
T ss_dssp EEEHHHHHHHHHHH---TTCCEEEECC--CGG--GHHHHHGGGG-S-TTCEECC-CSSHHHHHHHHHHHHHHHS-CEEEE
T ss_pred ccCHHHHHHHHHHH---cCCCEEEEcC--Ccc--hHHHHHHHhh-c-CCceEEc-cCchHHHHHHHHHHHHhhC-CcEEE
Confidence 34556666555543 3344555444 211 1122333432 1 21 4443 68999999999999997 6 55544
Q ss_pred eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCC----CCCCCC------cchHHHHHccCCCcEEEccCC
Q 024237 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GVGAQH------SHCYAAWYASVPGLKVLSPYS 183 (270)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~----~~G~tH------~~~~~a~lr~iPn~~V~~P~d 183 (270)
+.+..-..-++--|-+ + +. .++||+++..+-... +...+| .|....+++.+--.... ..+
T Consensus 72 ~TsGpG~~N~~~gia~-A-~~-------~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~-v~~ 141 (563)
T 2vk8_A 72 TTFGVGELSALNGIAG-S-YA-------EHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAM-ITD 141 (563)
T ss_dssp EETTHHHHHHHHHHHH-H-HH-------HTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEE-CCC
T ss_pred EcCCCcHHHHHHHHHH-H-Hh-------hCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEE-eCC
Confidence 4333434445556644 3 22 489999986532110 111111 13345889888755444 444
Q ss_pred H----HHHHHHHHHhHhCCCCeEEeecccc
Q 024237 184 S----EDARGLLKAAIRDPDPVVFLENELL 209 (270)
Q Consensus 184 ~----~e~~~~l~~a~~~~~P~~ir~~~~~ 209 (270)
+ ..+..+++.+....+||||..|...
T Consensus 142 ~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 142 IATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp TTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 3 4555666666655699999877543
No 47
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=85.05 E-value=4.3 Score=38.83 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEEee
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~ 115 (270)
++..+++.+.|.+. .-+.|+..+ +.. ...+.+.+.+.- .=|++ ...-|++++.+|.|+|+. | ..++...
T Consensus 3 ~~~a~~l~~~L~~~---GV~~vfg~P--G~~--~~~l~~al~~~~-~i~~v-~~~~E~~Aa~~A~Gyar~tg-~~v~~~T 72 (566)
T 2vbi_A 3 YTVGMYLAERLVQI---GLKHHFAVA--GDY--NLVLLDQLLLNK-DMKQI-YCCNELNCGFSAEGYARSNG-AAAAVVT 72 (566)
T ss_dssp CBHHHHHHHHHHHH---TCSEEEECC--CTT--THHHHHHHHTCT-TSEEE-ECSSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred cCHHHHHHHHHHHc---CCCEEEeCC--CCc--cHHHHHHHhcCC-CCeEE-eeCcHHHHHHHHHHHHhhcC-CeEEEEe
Confidence 45566666665543 445555544 211 112334443221 11343 378999999999999997 7 4444443
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCC--CCc----ch-H-HHHHccCCCcEEEccCCHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA--QHS----HC-Y-AAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~--tH~----~~-~-~a~lr~iPn~~V~~P~d~~ 185 (270)
+..-..-++--|-+ + +. .++||+++..+-.. .+.+. +|. +. + ..+++.+--. .+.+.+++
T Consensus 73 sGpG~~N~~~gia~-A-~~-------~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~ 142 (566)
T 2vbi_A 73 FSVGAISAMNALGG-A-YA-------ENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCA-AESITDAH 142 (566)
T ss_dssp TTTTHHHHHHHHHH-H-HH-------TTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSE-EEEECSSS
T ss_pred CCCCHHHHHHHHHH-H-Hh-------hCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeE-EEEeCCHH
Confidence 33334445566644 3 32 58999998654222 22232 231 22 3 4899988554 34444555
Q ss_pred HHHH----HHHHhHhCCCCeEEeeccc
Q 024237 186 DARG----LLKAAIRDPDPVVFLENEL 208 (270)
Q Consensus 186 e~~~----~l~~a~~~~~P~~ir~~~~ 208 (270)
++.. +++.+....+||||..|..
T Consensus 143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 4444 4444554469999987754
No 48
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=82.17 E-value=3.1 Score=41.42 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=63.8
Q ss_pred cccchhHHHHHHHHHhhcC---------------CccEEEeehhhHH-H--HHHHHHHHHHhhccccCCCCCCCC-EEEE
Q 024237 89 TPITEAGFTGIGVGAAYYG---------------LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVP-IVFR 149 (270)
Q Consensus 89 ~GIaE~~~vg~AaGlA~~G---------------~~Pi~~~~~~~f~-~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~ 149 (270)
+|..=+ -++.|.|+|+.- -+.++++. .+=. + -.++.+. .++. .++| ++++
T Consensus 154 tG~lG~-gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~-GDG~l~eG~~~Eal~-~A~~--------~~L~~livI 222 (711)
T 3uk1_A 154 TGPLGQ-GLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFL-GDGCLMEGISHEACS-LAGT--------LKLNKLIAL 222 (711)
T ss_dssp CCSTTH-HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEE-CHHHHHSHHHHHHHH-HHHH--------TTCTTEEEE
T ss_pred ccchhh-HHHHHHHHHHHHHhhcccccccccccCCCeEEEEE-CCcchhhccHHHHHH-HHHH--------hCCCcEEEE
Confidence 444333 366677777642 23455444 4322 2 4667774 4555 4776 6666
Q ss_pred ecCCCCCCCCCCC---cchHHHHHccCCCcEEEcc---CCHHHHHHHHHHhHhCCCCeEEeec
Q 024237 150 GPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSP---YSSEDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 150 ~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~~P---~d~~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
..+...+-+|.++ ...+...+++. |+.++.| .|.+++..+++.+.+.++|++|...
T Consensus 223 ~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 223 YDDNGISIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp EEECSEETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred EECCCcccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 5442222233332 12345788887 8888876 4788999999998888899999643
No 49
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=81.76 E-value=6.9 Score=38.76 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=61.9
Q ss_pred HHHHHHHHhhcC---------------CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCC
Q 024237 96 FTGIGVGAAYYG---------------LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAG 157 (270)
Q Consensus 96 ~vg~AaGlA~~G---------------~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~ 157 (270)
-++.|.|+|+.- -+.++++.----++ -+++.+. .++. .++| ++++..+...+-
T Consensus 145 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~-~A~~--------~~L~~livI~dnN~~~i 215 (690)
T 3m49_A 145 GIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASS-LAAH--------LQLGRLVVLYDSNDISL 215 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHH-HHHH--------TTCTTEEEEEEECSBCS
T ss_pred cHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHH-HHHH--------hCCCeEEEEEECCCeec
Confidence 366777777652 23344444222222 4677774 3554 4675 555544322222
Q ss_pred CCCCC---cchHHHHHccCCCcEEEcc---CCHHHHHHHHHHhHh-CCCCeEEeec
Q 024237 158 VGAQH---SHCYAAWYASVPGLKVLSP---YSSEDARGLLKAAIR-DPDPVVFLEN 206 (270)
Q Consensus 158 ~G~tH---~~~~~a~lr~iPn~~V~~P---~d~~e~~~~l~~a~~-~~~P~~ir~~ 206 (270)
++.++ ...+...+++. |+.++.+ .|.+++..+++.+.+ .++|++|...
T Consensus 216 ~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 216 DGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp SSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred ccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 34443 12334778877 9999998 688999999999987 6899999643
No 50
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=81.31 E-value=5.6 Score=38.70 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=24.3
Q ss_pred CcEEE---ccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 175 GLKVL---SPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 175 n~~V~---~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
|++.+ ...|.+++..+++.+.+.++|++|..
T Consensus 247 G~~~~g~vdG~d~~~l~~al~~A~~~~gP~lI~v 280 (621)
T 2o1s_A 247 GFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHI 280 (621)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCeEeeeeCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45444 34689999999999998899998854
No 51
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=81.02 E-value=3.6 Score=38.98 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCCeeecc-cchhHHHHHHHHHhhcC-CccEEEeehhhHH-HHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC-
Q 024237 83 PERVLDTP-ITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA- 156 (270)
Q Consensus 83 p~R~id~G-IaE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~-~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~- 156 (270)
|.+|+..+ -+=...++.|.|+++.- .++++++. .+-. +..++.+-. +++ .++|++++. .++ ...
T Consensus 392 ~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~-GDG~~~~~~~~l~~-a~~--------~~l~~~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 392 PGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVI-GDGSANYSISALWT-AAQ--------YNIPTIFVIMNNGTYGAL 461 (528)
T ss_dssp SSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEE-EHHHHTTTGGGHHH-HHH--------HTCCCEEEEEECSBCHHH
T ss_pred CCcEECCCCccccchHHHHHHHHHhCCCCcEEEEE-CCcHHHhhHHHHHH-HHH--------hCCCeEEEEEeCCcchHh
Confidence 56676532 22334567788888763 35666554 3222 233555533 334 367777654 332 211
Q ss_pred -C----------CCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -G----------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -~----------~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .+.. |...+..+.++. |+.-+...+.+|++..++.+.+.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 520 (528)
T 1q6z_A 462 RWFAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLIE 520 (528)
T ss_dssp HHHHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEEE
Confidence 0 0111 222344666665 778888889999999999999989999884
No 52
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=80.05 E-value=4.9 Score=38.78 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=67.5
Q ss_pred CeeecccchhHHHHHHHHHhhcCCcc-EEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCCCC
Q 024237 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ 161 (270)
Q Consensus 85 R~id~GIaE~~~vg~AaGlA~~G~~P-i~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G~t 161 (270)
|++- ..-|+++.-+|-|+|+..-+| +|..-+..-...++--|-+ +-+ ..+||+++..+-.. .+.|..
T Consensus 71 ~~i~-~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~-A~~--------~~vPlv~ItG~~~~~~~g~~~~ 140 (604)
T 2x7j_A 71 SVHV-QIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVE-AHY--------SRVPIIVLTADRPHELREVGAP 140 (604)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHH-HHH--------HTCCEEEEEEECCGGGSSSCCT
T ss_pred eEEE-ecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHH-Hhh--------cCCCEEEEeCCCCHHHhCCCCC
Confidence 5555 489999999999999985555 3333333444455556643 322 48999998653222 122322
Q ss_pred CcchH-HHHHccCCCcEEEc--cCC--------HHHHHHHHHHhHh-CCCCeEEeeccc
Q 024237 162 HSHCY-AAWYASVPGLKVLS--PYS--------SEDARGLLKAAIR-DPDPVVFLENEL 208 (270)
Q Consensus 162 H~~~~-~a~lr~iPn~~V~~--P~d--------~~e~~~~l~~a~~-~~~P~~ir~~~~ 208 (270)
+ ..+ ..+++.+--..... |.+ +..+..+++.+.. .+|||+|-.|..
T Consensus 141 Q-~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 141 Q-AINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp T-CCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred C-cCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 2 222 36777776654444 343 3345556665555 478999987643
No 53
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=79.19 E-value=6.7 Score=37.30 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehhhHH-HHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~-~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~ 156 (270)
|.+|+..+- +=...++.|.|+++.. -++++++. .+-. +..+..+- .+++ .++|++++. .+ +...
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~-GDGs~~~~~~~L~-ta~~--------~~l~~~ivv~nN~~~g~ 465 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMC-GDGGFSMLMGDFL-SVVQ--------MKLPVKIVVFNNSVLGF 465 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEE-EHHHHHHTGGGHH-HHHH--------TTCCCEEEEEECSBCCC
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEE-ccchhhccHHHHH-HHHH--------hCCCeEEEEEeCCccHH
Confidence 567775321 1124678888888874 45666554 3221 22344443 3434 467766553 33 2211
Q ss_pred ---C--------CCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ---G--------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ---~--------~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .+.+ |...+..+.++. |+.-+...+++|++..++.+.+.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 524 (549)
T 3eya_A 466 VAMEMKAGGYLTDGTELHDTNFARIAEAC-GITGIRVEKASEVDEALQRAFSIDGPVLVD 524 (549)
T ss_dssp C------------CCBCCCCCHHHHHHHT-TSEEEEECSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhcCCCCcCCcCCCCCHHHHHHHc-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 212334666665 788888899999999999999999999984
No 54
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=78.84 E-value=5.9 Score=37.79 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCccEEEeehhhHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCCCC--------------C
Q 024237 97 TGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVG--------------A 160 (270)
Q Consensus 97 vg~AaGlA~~G~~Pi~~~~~~~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~~G--------------~ 160 (270)
++.|.|.++.--++++++. .+-.. ..+..| ..+.+ .++|++++. .++.++-.+ .
T Consensus 422 l~~A~Gaa~a~~~~vv~i~-GDGsf~~~~~eL-~ta~~--------~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~ 491 (556)
T 3hww_A 422 LSTAAGVQRASGKPTLAIV-GDLSALYDLNAL-ALLRQ--------VSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLM 491 (556)
T ss_dssp HHHHHHHHHHHCCCEEEEE-EHHHHHHTGGGH-HHHTT--------CSSCEEEEEEESCC-----------------CCC
T ss_pred HHHHHHHHhcCCCcEEEEE-ccHHhhhcchhh-Hhhcc--------cCCCcEEEEEECCCCCcccCCCCcchhHHHhccC
Confidence 7888888886445666554 33221 122233 22333 578887764 333211011 1
Q ss_pred CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 161 tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.|...+..+.++. |+.-+...+++|++.+++.+++.++|++|-
T Consensus 492 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 534 (556)
T 3hww_A 492 PQNVHFEHAAAMF-ELKYHRPQNWQELETAFADAWRTPTTTVIE 534 (556)
T ss_dssp CCCCCSHHHHHHT-TCEEECCSSHHHHHHHHHHHTTSSSEEEEE
T ss_pred CCCCCHHHHHHHc-CCcEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1212223555555 788888999999999999999989999884
No 55
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=77.96 E-value=7.1 Score=37.49 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+|++.|- +-...++.|.|+++.- -++++++.-- .|. ..+..+- .+++ .++|++++. .++ ...
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~-~~~~~L~-ta~~--------~~l~~~ivv~NN~~~~~ 485 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFI-MNVQELA-TIRV--------ENLPVKVLLLNNQHLGM 485 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHH-HTTTHHH-HHHH--------TTCCEEEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhh-ccHHHHH-HHHH--------hCCCcEEEEEECCcchH
Confidence 678898763 2334778888888763 3566655422 222 2344443 3444 478876654 332 210
Q ss_pred ---------C---CCC---C-C-----cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 ---------G---VGA---Q-H-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ---------~---~G~---t-H-----~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
+ .+. + | ...+..+.++. |+.-+...+.+|+..+++.+.+.++|++|-
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 553 (590)
T 1ybh_A 486 VMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLLD 553 (590)
T ss_dssp HHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 010 0 0 12334566665 666667789999999999999989999884
No 56
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=77.69 E-value=6.8 Score=38.37 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcC------------CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCC
Q 024237 96 FTGIGVGAAYYG------------LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGA 160 (270)
Q Consensus 96 ~vg~AaGlA~~G------------~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~ 160 (270)
-++.|.|+|+.- -+.++++.----++ -+++.+. .++. .++| ++++..+...+-+++
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~-~A~~--------~~L~~livi~nnN~~~i~~~ 189 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACS-LAGL--------HKLDNFILIYDSNNISIEGD 189 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHH-HHHH--------TTCTTEEEEEEECSEETTEE
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHH-HHHH--------cCCCcEEEEEECCCcccccc
Confidence 466777777642 23444444222233 5677774 3554 4675 666554322222232
Q ss_pred CC---cchHHHHHccCCCcEEEccC---CHHHHHHHHHHhHhCCCCeEEee
Q 024237 161 QH---SHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 161 tH---~~~~~a~lr~iPn~~V~~P~---d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
++ ...+...+++. |+.++ +. |.+++..+++.+.+.++|++|..
T Consensus 190 ~~~~~~~d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~~~~P~lI~v 238 (632)
T 3l84_A 190 VGLAFNENVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKKSTKPCLIIA 238 (632)
T ss_dssp GGGTCCCCHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hhhhcChhHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 22 12345788887 99988 55 68888899999988889999864
No 57
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=77.54 E-value=6.8 Score=38.20 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 180 SPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
...|.+++..+++.+.+.++|++|..
T Consensus 260 dG~d~~~l~~al~~A~~~~~P~lI~v 285 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVDLDGPTILHI 285 (629)
T ss_dssp ESSCHHHHHHHHHHHTTSSSEEEEEE
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEE
Confidence 44589999999999988889999854
No 58
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=76.36 E-value=12 Score=35.53 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=85.4
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEeeh
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~~~ 116 (270)
++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+ . ++=-+-...-|++++-+|.|.|+....+++...+
T Consensus 5 ~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~-~-~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~ts 75 (552)
T 1ovm_A 5 YCVADYLLDRLTD---CGADHLFGVP--GDY--NLQFLDHVID-S-PDICWVGCANELNASYAADGYARCKGFAALLTTF 75 (552)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECC--CGG--GHHHHHHHHH-C-SSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred cCHHHHHHHHHHH---cCCCEEEECC--Chh--HHHHHHHHhc-C-CCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEcc
Confidence 4566666666554 3445555544 211 1123344432 2 3322345789999999999999974355444433
Q ss_pred hhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--C--C------CCC-CCcchHHHHHccCCCcEEEccC--C
Q 024237 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--A--G------VGA-QHSHCYAAWYASVPGLKVLSPY--S 183 (270)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~--~------~G~-tH~~~~~a~lr~iPn~~V~~P~--d 183 (270)
..-..-++--|-+ + +. .++||+++..+-.. . + .|. .+ |....+++.+--.....+. -
T Consensus 76 GpG~~N~~~gv~~-A-~~-------~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~-q~~~~~~~~~tk~~~~v~~~~~ 145 (552)
T 1ovm_A 76 GVGELSAMNGIAG-S-YA-------EHVPVLHIVGAPGTAAQQRGELLHHTLGDGEF-RHFYHMSEPITVAQAVLTEQNA 145 (552)
T ss_dssp THHHHHTHHHHHH-H-HH-------TTCCEEEEEEECCHHHHHHTCCCTTSCSSSCC-SHHHHHTGGGCSEEEECCTTTH
T ss_pred CCcHHHHHHHHHH-H-hh-------hcCCEEEEECCCCHHHHhcccccccccCCCcH-HHHHHHHHhheeEEEEEccccH
Confidence 3444455666643 3 22 58999998653211 1 1 111 12 3335788887666555544 1
Q ss_pred HHHHHHHHHHhHhCCCCeEEeecccc
Q 024237 184 SEDARGLLKAAIRDPDPVVFLENELL 209 (270)
Q Consensus 184 ~~e~~~~l~~a~~~~~P~~ir~~~~~ 209 (270)
+..+..+++.+....+||||-.|...
T Consensus 146 ~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 146 CYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 34455556656544699999877543
No 59
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=75.12 E-value=10 Score=36.11 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=66.1
Q ss_pred CCCeeecccc--hhHHHHHHHHHhhcCCccEEEeehhhHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCCC
Q 024237 83 PERVLDTPIT--EAGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAAG 157 (270)
Q Consensus 83 p~R~id~GIa--E~~~vg~AaGlA~~G~~Pi~~~~~~~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~~ 157 (270)
|.++++.|.. =...++.|.|.++..-++++++. .+-.. ..+..+- .+.+ .++|++++. .+ |....
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i~-GDGsf~~~~~el~-ta~~--------~~l~~~ivv~NN~~~~~~ 485 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVE-GDSAFGFSGMELE-TICR--------YNLPVTVIIMNNGGIYKG 485 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEEE-EHHHHHTTGGGHH-HHHH--------TTCCEEEEEEESSBSSCS
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEEE-cchHhhccHHHHH-HHHH--------hCCCeEEEEEeCchhHHH
Confidence 7777775531 22447778787776445565554 32221 2233342 2333 478877764 33 32111
Q ss_pred C------CC-----CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 V------GA-----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 ~------G~-----tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. +. .|...+..+.++. |+.-+...+.+|++..++.+++.++|++|-
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 542 (568)
T 2c31_A 486 NEADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPAELKAALEEAVASGKPCLIN 542 (568)
T ss_dssp CCCCSBTTBCCTTBCCCCCHHHHHHTT-TCEEEEESSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHhhcCCcccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 00 1212334666665 788888899999999999999888999884
No 60
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=74.96 E-value=9.6 Score=37.54 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=62.0
Q ss_pred ecccchhHHHHHHHHHhhcC---------------CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEE
Q 024237 88 DTPITEAGFTGIGVGAAYYG---------------LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFR 149 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~G---------------~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~ 149 (270)
.+|..=+ -++.|.|+|+.- -+.++++.----++ -.++.+. .++. .++| ++++
T Consensus 114 ~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~-~A~~--------~~L~~livi 183 (663)
T 3kom_A 114 TTGPLGQ-GVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACS-LAGT--------LGLNKLVAF 183 (663)
T ss_dssp CCCSTTH-HHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHH-HHHH--------HTCTTEEEE
T ss_pred CCcchhh-HHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHH-HHHH--------hCCCeEEEE
Confidence 4454443 356677777652 13455454222222 4667774 4555 4776 5555
Q ss_pred ecCCCCCCCCCCC---cchHHHHHccCCCcEEEccC---CHHHHHHHHHHhHh-CCCCeEEeec
Q 024237 150 GPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIR-DPDPVVFLEN 206 (270)
Q Consensus 150 ~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~~P~---d~~e~~~~l~~a~~-~~~P~~ir~~ 206 (270)
..+...+-+|.+. ...+...+++. |+.++-+. |.+++..+++.+.+ .++|++|...
T Consensus 184 ~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 184 WDDNNISIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp EEECC-----CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EECCCcccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4432222223332 23345788887 99988444 78899999999988 5899999643
No 61
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=74.17 E-value=10 Score=36.16 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=66.3
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+|+..+- +=...++.|.|+|+.- -++++++.-- .|.+ .+..+. .+.+ .++|++++. .++ ...
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~-~~~~L~-ta~~--------~~l~~~ivv~nN~~~~~ 479 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQ-SSMELE-TAVR--------LKANVLHLIWVDNGYNM 479 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHH-HTTHHH-HHHH--------HTCCEEEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhc-cHHHHH-HHHH--------hCCCcEEEEEECCchhH
Confidence 667776431 1234567788877763 3555555422 2222 344443 3434 478877654 332 210
Q ss_pred -----------CCCC-CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -----------GVGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -----------~~G~-tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..+. .|...+..+.++. |+.-+...+.+|+...++.+++.++|++|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 538 (566)
T 1ozh_A 480 VAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVVA 538 (566)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 1222345677776 888888899999999999999989999884
No 62
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=73.99 E-value=15 Score=36.02 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=52.3
Q ss_pred ccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCC---cchHHHHHccCCCcEEEccC
Q 024237 109 KPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSPY 182 (270)
Q Consensus 109 ~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~~P~ 182 (270)
+.++++.----++ .+++.+. .++. .++| ++++..+...+-+++++ ...+...+++. |+.++-+.
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal~-~A~~--------~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~v 220 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAAS-LAGH--------WGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAY-GWQTLRVE 220 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHHH-HHHH--------TTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHT-TCEEEEES
T ss_pred CEEEEEEChhhhchhHHHHHHH-HHHH--------cCCCeEEEEEECCCcccccccccccCccHHHHHHhC-CCeEEEEe
Confidence 3444444222333 4677774 3554 4676 66665532222122222 12334778886 99988443
Q ss_pred ---CHHHHHHHHHHhHhCCCCeEEee
Q 024237 183 ---SSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 183 ---d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
|..++..+++.+.+.++|++|..
T Consensus 221 dG~d~~~l~~al~~a~~~~~P~lI~~ 246 (651)
T 2e6k_A 221 DVNDLEALRKAIKLAKLDERPTLIAV 246 (651)
T ss_dssp CTTCHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 68889999999888889998864
No 63
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=72.12 E-value=7.8 Score=37.00 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhc-CCccEEEee
Q 024237 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (270)
Q Consensus 37 ~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~-G~~Pi~~~~ 115 (270)
++..+++.+.|.+ ..-+.|+..+ +.. ...+.+.+.+ . ++=-+-...-|++++.+|.|+|+. | ..++...
T Consensus 25 ~~~a~~l~~~L~~---~GV~~vfg~P--G~~--~~~l~~al~~-~-~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~t 94 (570)
T 2vbf_A 25 YTVGDYLLDRLHE---LGIEEIFGVP--GDY--NLQFLDQIIS-R-EDMKWIGNANELNASYMADGYARTKK-AAAFLTT 94 (570)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECC--CGG--GHHHHHHHHH-C-SSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred CCHHHHHHHHHHH---cCCCEEEECC--Ccc--hHHHHHHHhc-C-CCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEc
Confidence 4566666666554 3345555544 211 1122333432 2 222233578999999999999965 7 4444443
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCC--CCCC-CCCc-----c--hHHHHHccCCCcEEEccCCHH
Q 024237 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG-AQHS-----H--CYAAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~--~~~G-~tH~-----~--~~~a~lr~iPn~~V~~P~d~~ 185 (270)
+..-..-++--|-+ + +. .++||+++..+-.. .+.+ ..|+ + ....+++.+.-.....+. +
T Consensus 95 sGpG~~N~~~gi~~-A-~~-------~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~--~ 163 (570)
T 2vbf_A 95 FGVGELSAINGLAG-S-YA-------ENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA--E 163 (570)
T ss_dssp TTHHHHHHHHHHHH-H-HH-------TTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--T
T ss_pred CCCCHHHHHHHHHH-H-hh-------hCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--c
Confidence 34444456666653 3 32 58999998643211 1111 1221 1 124788888765555443 4
Q ss_pred HHHH----HHHHhHhCCCCeEEeeccc
Q 024237 186 DARG----LLKAAIRDPDPVVFLENEL 208 (270)
Q Consensus 186 e~~~----~l~~a~~~~~P~~ir~~~~ 208 (270)
++.. +++.+....+||+|-.|..
T Consensus 164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 4444 4444554569999987654
No 64
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=71.65 E-value=13 Score=35.69 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CC-CCC-
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G-~~~- 156 (270)
|.+|+..+. +=...++.|.|+++.. -++++++.----++..+..+- .++. .++|++++.- ++ ...
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~-~a~~--------~~lp~~~vv~nN~~~~~~ 480 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLA-TQVQ--------YHLPVINVVFTNCQYGFI 480 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHH-HHHH--------TTCCCEEEEEECSBCHHH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHH-HHHH--------HCcCeEEEEEECCchHHH
Confidence 567776543 2234667888888875 455555542211222355553 3444 4788776643 32 221
Q ss_pred -----------CCCCC-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhH--hCCCCeEEe
Q 024237 157 -----------GVGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (270)
Q Consensus 157 -----------~~G~t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~--~~~~P~~ir 204 (270)
..+.. +...+..+.++. |+.-+.+.+++|+...++.+. +.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIe 541 (603)
T 4feg_A 481 KDEQEDTNQNDFIGVEFNDIDFSKIADGV-HMQAFRVNKIEQLPDVFEQAKAIAQHEPVLID 541 (603)
T ss_dssp HHHHHHHCSSCCCSSBCCCCCHHHHHHHT-TCEEEEECBGGGHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHhcCCCcccCcCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 11111 222344566665 777778889999999999999 889999984
No 65
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=71.24 E-value=13 Score=35.62 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=64.0
Q ss_pred CCCeeec---ccchhHHHHHHHHHhhcC-CccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCC-
Q 024237 83 PERVLDT---PITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAA- 155 (270)
Q Consensus 83 p~R~id~---GIaE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~- 155 (270)
|.+|+.. |.- ...++.|.|+++.- -++++++.----++..+..+. .++. .++|++++. .+ +..
T Consensus 403 ~~~~~~~~~~g~m-G~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~-ta~~--------~~l~~~ivv~NN~~~~~ 472 (590)
T 1v5e_A 403 KNMWRTSPLFATM-GIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVV-TNVR--------YNMPVINVVFSNTEYAF 472 (590)
T ss_dssp TSEEECCCSSCCT-TCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHH-HHHH--------TTCCCEEEEEECSSCTT
T ss_pred CCeEEcCCCCCcc-cChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHH-HHHH--------hCCCCEEEEEECCchHH
Confidence 6677742 222 34457778877763 455555542211122344443 3444 467766654 33 221
Q ss_pred -CC-C--------CC-CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhC---CCCeEEe
Q 024237 156 -AG-V--------GA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (270)
Q Consensus 156 -~~-~--------G~-tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~---~~P~~ir 204 (270)
.. . |. .|...+..+.++. |+.-+...+++|+...++.+++. ++|++|-
T Consensus 473 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~lie 534 (590)
T 1v5e_A 473 IKNKYEDTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVID 534 (590)
T ss_dssp GGGTTSSSCCSCCCCCCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCCccccCCCCCHHHHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 11 1 01 1212344666666 78878888999999999999877 8999884
No 66
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=70.09 E-value=27 Score=34.27 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=52.5
Q ss_pred cEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCC---cchHHHHHccCCCcEEE-cc-
Q 024237 110 PVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQH---SHCYAAWYASVPGLKVL-SP- 181 (270)
Q Consensus 110 Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~-~P- 181 (270)
.++++.----++ ..++.+. .++. .++| ++++..+...+-+|++. ...+...+++. |+.++ .-
T Consensus 150 ~v~~~~GDG~~~eG~~~Eal~-~A~~--------~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vd 219 (673)
T 1r9j_A 150 YTYVYCGDGCLMEGVCQEALS-LAGH--------LALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAM-GFHVIEVKN 219 (673)
T ss_dssp CEEEEECHHHHHSHHHHHHHH-HHHH--------HTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHT-TCEEEEESC
T ss_pred EEEEEECcchhcccHHHHHHH-HHHH--------hCCCcEEEEEECCCCccccchhhccCHhHHHHHHHC-CCeEEEEeC
Confidence 444444333333 3467774 3554 3675 66665432222233332 12345788886 99998 43
Q ss_pred --CCHHHHHHHHHHhHh-CCCCeEEeec
Q 024237 182 --YSSEDARGLLKAAIR-DPDPVVFLEN 206 (270)
Q Consensus 182 --~d~~e~~~~l~~a~~-~~~P~~ir~~ 206 (270)
.|.+++..+++.+.+ .++|++|...
T Consensus 220 G~~d~~~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 220 GDTDYEGLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp TTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 688899999998887 6889998643
No 67
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=68.70 E-value=17 Score=34.82 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCC--------------
Q 024237 96 FTGIGVGAAYYGLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG-------------- 159 (270)
Q Consensus 96 ~vg~AaGlA~~G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G-------------- 159 (270)
.++.|.|.|+.+ ++++++.-- .|.+ .+..+- .+.+ .++|++++.- ++.++-..
T Consensus 441 ~l~~AiGaa~~~-~~vv~i~GDGsf~~-~~~eL~-ta~~--------~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 441 VVSSALGASVVF-QPMFLLIGDLSFYH-DMNGLL-MAKK--------YKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp HHHHHHHHTTTS-SSEEEEEEHHHHHH-TGGGGH-HHHH--------TTCCEEEEEECCC--------------------
T ss_pred HHHHHHHHhcCC-CCEEEEEchHHHHh-hHHHHH-hhcc--------CCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 478889988654 555555421 2222 223332 2333 4788877643 32211111
Q ss_pred --CCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 160 --AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 160 --~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..|...+..+.++. |+.-+...+++|++.+++.+++.++|++|-
T Consensus 510 ~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 555 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFY-DADYHEAKSVDELEEAIDKASYHKGLDIIE 555 (578)
T ss_dssp -----CCCTHHHHHHT-TCEEEECCSHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccCCCCCCHHHHHHHc-CCceEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00111223455554 778888899999999999999989999984
No 68
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=68.29 E-value=23 Score=34.76 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcC---------------CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCC-CEEEEecCCCCCC
Q 024237 96 FTGIGVGAAYYG---------------LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAG 157 (270)
Q Consensus 96 ~vg~AaGlA~~G---------------~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~-pvi~~~~~G~~~~ 157 (270)
-++.|.|+|+.- -+.++++.----++ -.++.+.. ++. .++ |++++..+...+-
T Consensus 132 gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~-A~~--------~~L~~li~i~~nN~~~i 202 (675)
T 1itz_A 132 GIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSL-AGH--------WGLGKLIAFYDDNHISI 202 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHH-HHH--------TTCTTEEEEEEECSEET
T ss_pred HHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHH-HHH--------hCCCcEEEEEECCCccC
Confidence 456667776651 23444444333333 46777744 554 466 5777665432221
Q ss_pred CCCCC---cchHHHHHccCCCcEEEccC----CHHHHHHHHHHhHh-CCCCeEEee
Q 024237 158 VGAQH---SHCYAAWYASVPGLKVLSPY----SSEDARGLLKAAIR-DPDPVVFLE 205 (270)
Q Consensus 158 ~G~tH---~~~~~a~lr~iPn~~V~~P~----d~~e~~~~l~~a~~-~~~P~~ir~ 205 (270)
++++. .......+++. |+.++.+. |.+++..+++.+.+ .++|++|..
T Consensus 203 ~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~ 257 (675)
T 1itz_A 203 DGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKV 257 (675)
T ss_dssp TEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 22221 22334788887 99998443 78889999999887 588999864
No 69
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=67.38 E-value=32 Score=33.09 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred CCCeeeccc-c-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~GI-a-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+|++.|- . -...++.|.|+|+.- -++++++.-- .|. ..+..+- .++. .++|++++. .++ ...
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~-~~~~~L~-ta~~--------~~l~~~ivv~NN~~~~~ 501 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ-FLIEELA-VGAQ--------FNIPYIHVLVNNAYLGL 501 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHH-HTGGGHH-HHHH--------TTCCCEEEEEECSBCHH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhh-CCHHHHH-HHHH--------hCCCeEEEEEECCcchH
Confidence 678998754 2 333778888888863 3555555422 222 2344453 3434 467776543 332 210
Q ss_pred ----------------C-CCC--C-C---cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEe
Q 024237 157 ----------------G-VGA--Q-H---SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (270)
Q Consensus 157 ----------------~-~G~--t-H---~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir 204 (270)
. .+. + | ...+..+.++. |+.-+...+++|+...++.+++ .++|++|-
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIe 575 (616)
T 2pan_A 502 IRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVE 575 (616)
T ss_dssp HHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 010 0 1 02334666666 7877788899999999999988 78999884
No 70
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=67.15 E-value=6.3 Score=38.00 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCCCC-------------
Q 024237 95 GFTGIGVGAAYYGLKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVG------------- 159 (270)
Q Consensus 95 ~~vg~AaGlA~~G~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~~G------------- 159 (270)
..++.|.|+|+.--++++++.-- .|.+ .+..+- .+.+ .++|++++. .++.++-.+
T Consensus 459 ~~l~~AiGaala~~~~vv~i~GDGsf~~-~~~eL~-ta~~--------~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~ 528 (604)
T 2x7j_A 459 GVVSSAMGVCEGTKAPVTLVIGDLSFYH-DLNGLL-AAKK--------LGIPLTVILVNNDGGGIFSFLPQASEKTHFED 528 (604)
T ss_dssp SHHHHHHHHHHHHTSCEEEEEEHHHHHH-TGGGGH-HHHH--------HCCCEEEEEEECSSCGGGGGSGGGSCHHHHHH
T ss_pred cHHHHHHHHHhcCCCcEEEEEccHHHHh-HHHHHH-Hhhh--------cCCCeEEEEEeCCCCcccccCCCCccchhhHh
Confidence 46778888877644566655422 2322 233332 3333 478877654 332221111
Q ss_pred ---CCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 160 ---AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 160 ---~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
..|...+..+.++. |+.-+...+++|+..+++.+++.++|++|-
T Consensus 529 ~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 575 (604)
T 2x7j_A 529 LFGTPTGLDFKHAAALY-GGTYSCPASWDEFKTAYAPQADKPGLHLIE 575 (604)
T ss_dssp HTTCCCCCCTHHHHHHT-TCEEECCSSHHHHHHHCCCCCSSCCEEEEE
T ss_pred hccCCCCCCHHHHHHHc-CCeEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01111223555665 788889999999999999888888899884
No 71
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=66.39 E-value=23 Score=33.56 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCCeeec---ccchhHHHHHHHHHhhcC---CccEEEeehhhHH-HHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-C
Q 024237 83 PERVLDT---PITEAGFTGIGVGAAYYG---LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-G 153 (270)
Q Consensus 83 p~R~id~---GIaE~~~vg~AaGlA~~G---~~Pi~~~~~~~f~-~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G 153 (270)
|.+|+.. |.- ...++.|.|+|+.- -++++++. .+-. +..+..+-+ ++. .++|++++. .+ +
T Consensus 409 ~~~~~~~~g~g~~-G~~l~~AiGaa~a~~~~~~~vv~i~-GDG~~~~~~~~L~t-a~~--------~~l~~~ivv~nN~~ 477 (563)
T 2uz1_A 409 PGGFLCHGYLGSM-GVGFGTALGAQVADLEAGRRTILVT-GDGSVGYSIGEFDT-LVR--------KQLPLIVIIMNNQS 477 (563)
T ss_dssp CSEEECCCTTCCT-TTHHHHHHHHHHHHHHHTCEEEEEE-EHHHHGGGTTHHHH-HHH--------HTCCCEEEEEECSB
T ss_pred CCeEECCCCCccc-cChHHHHHHHHHHhhCCCCeEEEEE-ccHHHhCCHHHHHH-HHH--------hCCCeEEEEEeCCc
Confidence 6778873 333 25567777777653 45555554 3221 223444533 333 367766553 33 2
Q ss_pred CC--CC-----CCC------C-CcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 154 AA--AG-----VGA------Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 154 ~~--~~-----~G~------t-H~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.. .. .|. . |...+..+.++. |+.-+...+.+|++..++.+++.++|++|-
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 541 (563)
T 2uz1_A 478 WGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAF-GADGYHVDSVESFSAALAQALAHNRPACIN 541 (563)
T ss_dssp CHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEEE
T ss_pred chHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 21 00 111 1 222345677776 888888899999999999999989999884
No 72
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=65.70 E-value=8.6 Score=31.21 Aligned_cols=80 Identities=13% Similarity=-0.147 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHhCCCCeEEeec--ccccC-CCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 185 EDARGLLKAAIRDPDPVVFLEN--ELLYG-ESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 185 ~e~~~~l~~a~~~~~P~~ir~~--~~~~~-~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
+++..++-.++..++-+|++-. ....- .-+...+.++ .+. ++-...-+++++-+.|++....-..+++.|..++
T Consensus 25 ~~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~~e~l~--~~~-~~~~~~~i~~~D~vii~S~Sg~n~~~ie~A~~ak 101 (170)
T 3jx9_A 25 FDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGPDQMK--RVT-KIKDHKTLHAVDRVLIFTPDTERSDLLASLARYD 101 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTSTTCCT--TEE-ECCTTCCCCTTCEEEEEESCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHcccCCcc--chh-hhhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 6778889999999999999732 11100 0000000111 000 0000125677888888888888889999999999
Q ss_pred hcCCCe
Q 024237 262 KEGISA 267 (270)
Q Consensus 262 ~~Gi~~ 267 (270)
++|+.+
T Consensus 102 e~G~~v 107 (170)
T 3jx9_A 102 AWHTPY 107 (170)
T ss_dssp HHTCCE
T ss_pred HCCCcE
Confidence 999875
No 73
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=63.10 E-value=27 Score=33.28 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCCeeecc-cc-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~G-Ia-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+|+..+ .. =...++.|.|+|+.. -++++++.-- .|. ..+..+- .++. .++|++++. .++ ...
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~-~~~~~L~-~a~~--------~~l~~~ivv~NN~~~~~ 495 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFH-SNSSDLE-TIAR--------LNLPIVTVVVNNDTNGL 495 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHH-HTGGGHH-HHHH--------HTCCCEEEEEECSBCHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHH-hHHHHHH-HHHH--------hCCCeEEEEEECCcchh
Confidence 66788642 11 223568888888763 3555555422 222 2344443 2333 367765543 333 210
Q ss_pred -C----------CC--CCCc-chHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 -G----------VG--AQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 -~----------~G--~tH~-~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .+ .... ..+..+.++. |+.-+...+.+|+...++.+.+.++|++|-
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 556 (573)
T 2iht_A 496 IELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLIE 556 (573)
T ss_dssp HHHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEEE
T ss_pred hHHHHHHhcCCCcCccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01 1111 1334677776 888888899999999999999888999884
No 74
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=63.01 E-value=17 Score=34.46 Aligned_cols=111 Identities=10% Similarity=-0.012 Sum_probs=62.2
Q ss_pred CCCeeecc--cchhHHHHHHHHHhhcC-CccEEEeehhhHH-HHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC-CCC
Q 024237 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (270)
Q Consensus 83 p~R~id~G--IaE~~~vg~AaGlA~~G-~~Pi~~~~~~~f~-~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G-~~~ 156 (270)
|.+|+..+ -+=...++.|.|+++.. -++++++. .+-. +..+..+-+ +.+ .++|++++. .++ ...
T Consensus 398 ~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~-GDG~~~~~~~el~t-a~~--------~~l~~~ivv~nN~~~~~ 467 (552)
T 1ovm_A 398 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLT-GDGAAQLTIQELGS-MLR--------DKQHPIILVLNNEGYTV 467 (552)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEE-EHHHHHHHTTHHHH-HHH--------TTCCCEEEEEESSSCHH
T ss_pred CCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEE-CchHHHhHHHHHHH-HHH--------hCCCCEEEEEECCCCeE
Confidence 44566432 12234467788887763 35555554 3222 223444433 433 467766654 332 221
Q ss_pred C---CCC------CCcchHHHHHccCCCc----EEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 157 G---VGA------QHSHCYAAWYASVPGL----KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 157 ~---~G~------tH~~~~~a~lr~iPn~----~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. .|. .|...+..+.++. |+ .-+...+.+|+...++.+.+.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~lie 527 (552)
T 1ovm_A 468 ERAIHGAEQRYNDIALWNWTHIPQAL-SLDPQSECWRVSEAEQLADVLEKVAHHERLSLIE 527 (552)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGSTTTS-CSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEE
T ss_pred EEeeccCCCCcccCCCCCHHHHHHHh-CCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 121 1211233555555 67 7777889999999999998888998884
No 75
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=60.55 E-value=22 Score=33.70 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=65.5
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcCCccEEEeehhhHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAAG 157 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G~~Pi~~~~~~~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~~ 157 (270)
|.++++.|. +-...++.|.|+++..-++++++. .+-.. ..+..+ ..+.+ .++|++++. .+ |.+..
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i~-GDGsf~~~~~el-~ta~~--------~~l~~~ivv~NN~~~~~~ 480 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIE-GDSAFGFSGMEI-ETICR--------YNLPVTIVIFNNGGIYRG 480 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEEE-EHHHHHTTGGGH-HHHHH--------TTCCEEEEEEECSBSSCS
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEEE-cchHhhccHHHH-HHHHH--------hCCCeEEEEEeCchhHHH
Confidence 778877553 222357788888876445565554 33221 223334 23444 478877764 33 32111
Q ss_pred C-------C---C---CCcchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEe
Q 024237 158 V-------G---A---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 158 ~-------G---~---tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
. + . .|...+..+.++. |+.-+...+++|++..++.+++.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 539 (564)
T 2q28_A 481 DGVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTIIN 539 (564)
T ss_dssp CCCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 1 0 1111233556655 778888899999999999999888999884
No 76
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=58.05 E-value=20 Score=35.48 Aligned_cols=75 Identities=12% Similarity=-0.015 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCC---CcchHHHHHccCCCcEEEcc---CCHHHHHHHHHHh
Q 024237 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQ---HSHCYAAWYASVPGLKVLSP---YSSEDARGLLKAA 194 (270)
Q Consensus 122 ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~t---H~~~~~a~lr~iPn~~V~~P---~d~~e~~~~l~~a 194 (270)
.++|.+. .++. .++| ++++..+...+-+|++ +...+...+++. |+.++.- .|..++..+++.+
T Consensus 184 ~~~EAl~-~A~~--------~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al~~Al~~A 253 (700)
T 3rim_A 184 VTSEASS-LAAV--------QQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGIEEAIANA 253 (700)
T ss_dssp HHHHHHH-HHHH--------TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHHHHHHHHH
T ss_pred hHHHHHH-HHHH--------cCCCcEEEEEECCCcccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHHHHHHHHH
Confidence 4566764 3554 4785 7776543221112222 223334677776 8888765 4778888888888
Q ss_pred Hh-CCCCeEEeec
Q 024237 195 IR-DPDPVVFLEN 206 (270)
Q Consensus 195 ~~-~~~P~~ir~~ 206 (270)
.+ .++|++|...
T Consensus 254 ~~~~~~P~lI~~~ 266 (700)
T 3rim_A 254 QAVTDRPSFIALR 266 (700)
T ss_dssp HHCCSSCEEEEEE
T ss_pred HHcCCCCEEEEEE
Confidence 87 5889999654
No 77
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=56.48 E-value=26 Score=34.06 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcC------CccEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCC---Cc
Q 024237 96 FTGIGVGAAYYG------LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQ---HS 163 (270)
Q Consensus 96 ~vg~AaGlA~~G------~~Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~t---H~ 163 (270)
.++.|.|+|+.. -+.++++.----++ -+++.+.. ++. .++| ++++..+...+-++.+ +.
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~-A~~--------~~l~~livi~nnN~~~i~~~~~~~~~ 196 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAF-ASI--------YKLDNLVAILDINRLGQSDPAPLQHQ 196 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHH-HHH--------TTCTTEEEEEEECSBCSSSBCTTTTC
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHH-HHH--------cCCCcEEEEEECCCCCCcCCcccccC
Confidence 467777777752 13455444222222 56777743 554 4675 4444443222112322 22
Q ss_pred chH-HHHHccCCCcEEEccC---CHHHHHHHHHHhHhCCCCeEEee
Q 024237 164 HCY-AAWYASVPGLKVLSPY---SSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 164 ~~~-~a~lr~iPn~~V~~P~---d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
..+ ...+++. |+.++ +. |.+++..+++.+ .++|++|..
T Consensus 197 ~~~~~~~~~a~-G~~~~-~VdG~d~~~l~~al~~~--~~~P~lI~v 238 (616)
T 3mos_A 197 MDIYQKRCEAF-GWHAI-IVDGHSVEELCKAFGQA--KHQPTAIIA 238 (616)
T ss_dssp HHHHHHHHHHT-TCEEE-EEETTCHHHHHHHHHSC--CSSCEEEEE
T ss_pred hHHHHHHHHHc-CCeEE-EEcCCCHHHHHHHHHhc--CCCCEEEEE
Confidence 222 4678887 88877 55 566777777554 478999864
No 78
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=55.96 E-value=19 Score=34.30 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=59.8
Q ss_pred CCCeeecc--cchhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC
Q 024237 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA 156 (270)
Q Consensus 83 p~R~id~G--IaE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~ 156 (270)
|.+|+..+ -+=...++.|.|+|+.- -++++++.-- .|.+ .+..+- .+++ .++|++++. .+ +...
T Consensus 399 ~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~-~~~eL~-ta~~--------~~l~~~ivv~nN~~~~~ 468 (566)
T 2vbi_A 399 GARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQL-TAQEVA-QMVR--------YELPVIIFLINNRGYVI 468 (566)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHH-HGGGHH-HHHH--------TTCCCEEEEEECSSCHH
T ss_pred CCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHh-hHHHHH-HHHH--------hCCCcEEEEEECCcceE
Confidence 44676422 12234567888888763 3555555422 2222 344443 3444 467766553 33 3221
Q ss_pred --C--C---CCCCcchHHHHHccCCCc-----EEEccCCHHHHHHHHHHhHhC-CCCeEEe
Q 024237 157 --G--V---GAQHSHCYAAWYASVPGL-----KVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (270)
Q Consensus 157 --~--~---G~tH~~~~~a~lr~iPn~-----~V~~P~d~~e~~~~l~~a~~~-~~P~~ir 204 (270)
. . +..+...+..+.++. |+ .-+...+.+|+...++.+.+. ++|++|-
T Consensus 469 ~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 528 (566)
T 2vbi_A 469 EIAIHDGPYNYIKNWDYAGLMEVF-NAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIE 528 (566)
T ss_dssp HHTTSCCGGGCCCCCCTTTHHHHH-HTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred EEeeccCCccCCCCCCHHHHHHHc-CCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 0 111211223333333 44 666678999999999999987 8999984
No 79
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=52.99 E-value=26 Score=33.24 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCCeeecc--cchhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC
Q 024237 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA 156 (270)
Q Consensus 83 p~R~id~G--IaE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~ 156 (270)
|.+|+..+ -+=...++.|.|+|+.- -++++++.-- .|.+ .+..+- .+.+ .++|++++. .+ +...
T Consensus 403 ~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~-~~~el~-ta~~--------~~l~~~ivv~NN~~~~~ 472 (568)
T 2wvg_A 403 GARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQL-TAQEVA-QMVR--------LKLPVIIFLINNYGYTI 472 (568)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHH-HGGGHH-HHHH--------TTCCCEEEEEECSSCHH
T ss_pred CCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhc-cHHHHH-HHHH--------cCCCcEEEEEECCcceE
Confidence 45666421 12234567777877752 3555555422 2222 344443 3433 467766543 33 3221
Q ss_pred --C--C---CCCCcchHHHHHccCCCc---------EEEccCCHHHHHHHHHHhHhC-CCCeEEe
Q 024237 157 --G--V---GAQHSHCYAAWYASVPGL---------KVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (270)
Q Consensus 157 --~--~---G~tH~~~~~a~lr~iPn~---------~V~~P~d~~e~~~~l~~a~~~-~~P~~ir 204 (270)
. . +..+...+..+.++. |+ .-+...+.+|+...++.+.+. ++|++|-
T Consensus 473 ~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 536 (568)
T 2wvg_A 473 EVMIHDGPYNNIKNWDYAGLMEVF-NGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIE 536 (568)
T ss_dssp HHTTSCCGGGCCCCCCHHHHHHHH-HCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEE
T ss_pred eeeeccCCCcCCCCCCHHHHHHHh-CCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 1 111212333444443 44 556668999999999999987 8999884
No 80
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=49.35 E-value=47 Score=30.00 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhc----C-CccEEEeehh-hHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEecC-CCCCCCCCCC---c
Q 024237 95 GFTGIGVGAAYY----G-LKPVVEFMTF-NFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQH---S 163 (270)
Q Consensus 95 ~~vg~AaGlA~~----G-~~Pi~~~~~~-~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~-G~~~~~G~tH---~ 163 (270)
.-+..|.|+|+. | -++++++.-- .|.+ -.++.+ +-++. .++|++++..+ +.. -.++++ +
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~--------~~lpvi~vv~NN~~g-i~~~~~~~~~ 215 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGI-NFAGA--------FKAPAIFVVQNNRFA-ISTPVEKQTV 215 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHH-HHHHH--------TTCCEEEEEEECSEE-TTEEGGGTCS
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHH-HHHHH--------HCcCEEEEEEcCCcc-ceeccccccC
Confidence 345566666654 2 2344444322 2222 234555 33444 47899998653 321 111111 1
Q ss_pred ch-HHHHH--ccCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 164 HC-YAAWY--ASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 164 ~~-~~a~l--r~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
.. +.... -.+|++.| .=.|+.++..+++.+++ .++|++|-.
T Consensus 216 ~~d~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 216 AKTLAQKAVAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp CSCSGGGGGGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCHHHHHHHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 12222 34666654 34478999999999886 578999854
No 81
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=48.83 E-value=71 Score=31.31 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=50.8
Q ss_pred cEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCC---cchHHHHHccCCCcEEEccC-
Q 024237 110 PVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSPY- 182 (270)
Q Consensus 110 Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~~P~- 182 (270)
.++++.----++ -.++.+. .++. .++| ++++..+...+-++++. ...+...+++. |+.++-+.
T Consensus 150 ~vv~i~GDG~~~eG~~~Eal~-~A~~--------~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vd 219 (680)
T 1gpu_A 150 YTYVFLGDGCLQEGISSEASS-LAGH--------LKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAY-GWEVLYVEN 219 (680)
T ss_dssp CEEEEECHHHHHSHHHHHHHH-HHHH--------TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHH-TCEEEEESC
T ss_pred eEEEEECCCccchhhHHHHHH-HHHH--------hCCCcEEEEEECCCceEecccccccCccHHHHHHhc-CCeEEEEec
Confidence 444444332333 4567774 3554 4776 66665532222222222 12334677776 89888343
Q ss_pred ---CHHHHHHHHHHhHh-CCCCeEEee
Q 024237 183 ---SSEDARGLLKAAIR-DPDPVVFLE 205 (270)
Q Consensus 183 ---d~~e~~~~l~~a~~-~~~P~~ir~ 205 (270)
|.+++..+++.+.+ .++|++|..
T Consensus 220 G~~d~~~l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 220 GNEDLAGIAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp TTTCHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEE
Confidence 78888899998887 588998864
No 82
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=47.69 E-value=61 Score=31.71 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=51.4
Q ss_pred cEEEeehhhHHH--HHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCCCCCC---cchHHHHHccCCCcEEEcc--
Q 024237 110 PVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSP-- 181 (270)
Q Consensus 110 Pi~~~~~~~f~~--ra~dqi~~~~a~~~~~sg~~~~~p-vi~~~~~G~~~~~G~tH---~~~~~a~lr~iPn~~V~~P-- 181 (270)
.++++.----++ .+++.+. .++. .++| ++++..+...+-.+++. ...+...+++. |+.++-+
T Consensus 148 ~v~~~~GDG~~~eG~~~Eal~-~A~~--------~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vd 217 (669)
T 2r8o_A 148 YTYAFMGDGCMMEGISHEVCS-LAGT--------LKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAY-GWHVIRDID 217 (669)
T ss_dssp CEEEEECHHHHHSHHHHHHHH-HHHH--------TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHT-TCEEEEEEE
T ss_pred eEEEEECHhHhcchHHHHHHH-HHHH--------cCCCcEEEEEECCCcEeccccccccCccHHHHHHHC-CCeEEeEEC
Confidence 444444333333 4677774 4554 4676 66665532222222222 12334678876 8888733
Q ss_pred -CCHHHHHHHHHHhHh-CCCCeEEee
Q 024237 182 -YSSEDARGLLKAAIR-DPDPVVFLE 205 (270)
Q Consensus 182 -~d~~e~~~~l~~a~~-~~~P~~ir~ 205 (270)
.|..++..+++.+.+ .++|++|..
T Consensus 218 G~d~~~l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 218 GHDAASIKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp TTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 378999999999987 588998864
No 83
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=45.66 E-value=12 Score=35.83 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCeeec-ccc-hhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCCCCCC
Q 024237 83 PERVLDT-PIT-EAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (270)
Q Consensus 83 p~R~id~-GIa-E~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G~~~~ 157 (270)
|.+|+.. |.. =...++.|.|+++.. -++++++.-- .|.+ .++.+- .++. .++|++++. .++.++-
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~-~~~~L~-ta~~--------~~l~~~ivv~nN~~~~~ 483 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYY-HFNEFR-VAVE--------HKLPVITMVFTNESYGA 483 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHH-HGGGHH-HHHH--------TTCCCEEEEEECSBCHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHh-hHHHHH-HHHH--------hCCCeEEEEEECCCccc
Confidence 6678764 211 223567888888763 3555555422 2222 344443 3433 467766654 3332110
Q ss_pred C--------CC---CC--cchHHHHHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 158 V--------GA---QH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 158 ~--------G~---tH--~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
. +. +. ...+..+.++. |+.-+...+.+|+...++.+++.++|++|-.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~liev 543 (589)
T 2pgn_A 484 NWTLMNHQFGQNNWTEFMNPDWVGIAKAF-GAYGESVRETGDIAGALQRAIDSGKPALIEI 543 (589)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHHH-TCEEEECTTTCCHHHHHHHHHHHCSCEEEEE
T ss_pred chHHHHhhcCCCccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 00 11 11234555555 7777778899999999999998889998853
No 84
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=44.32 E-value=41 Score=31.95 Aligned_cols=144 Identities=10% Similarity=0.117 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhc-CCcEEEEecCCCCCCCccccchhhHhhhCCCCeeeccc--chhHHHHHHHHHhhc-CCccEEEeeh
Q 024237 41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMT 116 (270)
Q Consensus 41 ~a~~~~L~~~~~~-d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GI--aE~~~vg~AaGlA~~-G~~Pi~~~~~ 116 (270)
..+.+.|.+.+.. +..++ +..|++.+. +.. ..+ . |.+|+..+- +=...++.|.|+|+. .-++++++.
T Consensus 377 ~~v~~~l~~~l~~~~~~iv-~~~d~G~~~--~~~-~~~---~-~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~- 447 (565)
T 2nxw_A 377 MDIARAVNDRVRAGQEPLL-IAADMGDCL--FTA-MDM---I-DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVV- 447 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCE-EEECSSHHH--HHH-TTS---C-CSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEE-
T ss_pred HHHHHHHHHhcccccCCEE-EEecchHHH--HHH-HhC---C-CcEEEccCccccccccchHHHHHHHhCCCCcEEEEE-
Confidence 3455666666654 13343 234665321 111 112 3 667775321 112245668888765 235555554
Q ss_pred hhHHHH-HHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC-----CCC---CCCcchHHHHHccCCCcEEEccCCHH
Q 024237 117 FNFSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA-----GVG---AQHSHCYAAWYASVPGLKVLSPYSSE 185 (270)
Q Consensus 117 ~~f~~r-a~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~-----~~G---~tH~~~~~a~lr~iPn~~V~~P~d~~ 185 (270)
.+-... .+..+- .+.. .++|++++. .+ |... ..+ ..|...+..+.++. |+.-+...+.+
T Consensus 448 GDG~~~~~~~~l~-ta~~--------~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~ 517 (565)
T 2nxw_A 448 GDGAFQMTGWELG-NCRR--------LGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRA 517 (565)
T ss_dssp EHHHHHHHGGGGG-GHHH--------HTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGG-TSEEEEECBHH
T ss_pred echHHHhhHHHHH-HHHH--------hCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHc-CCCEEEeCCHH
Confidence 432221 122222 2222 367766553 33 3221 111 11212334666665 78888889999
Q ss_pred HHHHHHHHhHhCCCCe-EE
Q 024237 186 DARGLLKAAIRDPDPV-VF 203 (270)
Q Consensus 186 e~~~~l~~a~~~~~P~-~i 203 (270)
|++.+++.+++.++|+ +|
T Consensus 518 el~~al~~a~~~~gp~~li 536 (565)
T 2nxw_A 518 ELKAALDKAFATRGRFQLI 536 (565)
T ss_dssp HHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhcCCCeEEE
Confidence 9999999999888898 55
No 85
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=43.65 E-value=23 Score=27.20 Aligned_cols=32 Identities=6% Similarity=-0.145 Sum_probs=25.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.+++++||-|..+.-.+..++.|.+.|.++++
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l 49 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTT 49 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEE
Confidence 46799999999998888888888877765543
No 86
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=42.19 E-value=80 Score=29.83 Aligned_cols=111 Identities=10% Similarity=0.033 Sum_probs=59.2
Q ss_pred CCCeeecc--cchhHHHHHHHHHhhcC-CccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cC-CCCC
Q 024237 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA 156 (270)
Q Consensus 83 p~R~id~G--IaE~~~vg~AaGlA~~G-~~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~-G~~~ 156 (270)
|.+|+..+ -+=...++.|.|+++.- -++++++.-- .|.+ .+..+- .+.+ .++|++++. .+ +...
T Consensus 415 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~-~~~eL~-ta~~--------~~l~~~ivv~nN~~~~~ 484 (570)
T 2vbf_A 415 NSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQL-TVQELG-LSIR--------EKLNPICFIINNDGYTV 484 (570)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHH-HGGGHH-HHHH--------TTCCCEEEEEESSSCHH
T ss_pred CCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhc-CHHHHH-HHHH--------cCCCCEEEEEECCchHH
Confidence 45666322 12234567777877763 3555555422 2222 344443 2333 467766654 33 3321
Q ss_pred --C-CCC------CCcchHHHHHccCCCcE-----EEccCCHHHHHHHHHHh-HhCCCCeEEe
Q 024237 157 --G-VGA------QHSHCYAAWYASVPGLK-----VLSPYSSEDARGLLKAA-IRDPDPVVFL 204 (270)
Q Consensus 157 --~-~G~------tH~~~~~a~lr~iPn~~-----V~~P~d~~e~~~~l~~a-~~~~~P~~ir 204 (270)
. .|. .|...+..+.++. |+. .+...+.+|+...++.+ .+.++|++|-
T Consensus 485 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 546 (570)
T 2vbf_A 485 EREIHGPTQSYNDIPMWNYSKLPETF-GATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIE 546 (570)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGHHHHT-TCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHhccCCCccCCCCCCHHHHHHHc-CCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 111 1212233455554 554 56668999999999984 6678899884
No 87
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=41.87 E-value=9.3 Score=30.60 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHHHHHhhcC----CcEEEEecCCCCCCCccccchhhHhhhCC--------CCeeecccchhHHHHHHHH
Q 024237 35 KQMMVREALNSALDEEMSAD----PKVFLMGEEVGEYQGAYKISKGLLEKYGP--------ERVLDTPITEAGFTGIGVG 102 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d----~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp--------~R~id~GIaE~~~vg~AaG 102 (270)
-+..+|.+++++|.+.++.. .-.+.|+=+.. ..|+ .+.+.|+++| | .+|.|.-+.|.+ +..+
T Consensus 20 ~~~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~-~pGV-~i~d~L~~~Y-P~EMTIVLQhQF~dL~V~e~~---FsV~ 93 (157)
T 2qas_A 20 AQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTK-AAGV-SGPQDLLSKY-PDEMTIVLQHQYWDLAPGETF---FSVT 93 (157)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETT-STTC-BCCHHHHHHS-SSEEEEEESSSCEEEEECSSE---EEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccEEEEEEecC-CCCc-cCCHHHHhhC-CCceEEEEEeeecCcEEecCc---EEEE
Confidence 46779999999999999877 34577765543 3444 4568899999 8 589999999987 7888
Q ss_pred HhhcCCccEEEee
Q 024237 103 AAYYGLKPVVEFM 115 (270)
Q Consensus 103 lA~~G~~Pi~~~~ 115 (270)
|+..|..--+++.
T Consensus 94 LsFgg~pe~L~IP 106 (157)
T 2qas_A 94 LKFGGQPKRLSVP 106 (157)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEeCCeeeEEEee
Confidence 8888865555554
No 88
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=39.71 E-value=63 Score=29.51 Aligned_cols=99 Identities=23% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHHHHhhcC-----CccEEEeehh-hHHH-HHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCc---chH
Q 024237 97 TGIGVGAAYYG-----LKPVVEFMTF-NFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS---HCY 166 (270)
Q Consensus 97 vg~AaGlA~~G-----~~Pi~~~~~~-~f~~-ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~---~~~ 166 (270)
+..|.|+|+.- -++++++.-- .|.+ -.++.+ +-++. .++|++++..+...+-.++++. ..+
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal-~~A~~--------~~lpvi~vv~NN~~~i~~~~~~~~~~~d 238 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF-NFAAT--------LECPIIFFCRNNGYAISTPTSEQYRGDG 238 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH-HHHHH--------TTCCEEEEEEECSEETTEEGGGTCSSST
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHH-HHHHH--------HCcCEEEEEECCceeeeecccccCCCCC
Confidence 45666666641 2333333322 2222 234555 33444 4789999865321111222211 111
Q ss_pred -HHHHccCCCcEEEc--cCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 167 -AAWYASVPGLKVLS--PYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 167 -~a~lr~iPn~~V~~--P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
....++. |+.++. =.|+.++..+++.+++ .++|++|-.
T Consensus 239 ~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 239 IAARGPGY-GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TGGGTGGG-TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHc-CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2333332 554443 3478888888888876 588998854
No 89
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=39.59 E-value=12 Score=30.55 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=56.5
Q ss_pred ccchHHHHHHHHHHHHhhcC----CcEEEEecCCCCCCCccccchhhHhhhCC--------CCeeecccchhHHHHHHHH
Q 024237 35 KQMMVREALNSALDEEMSAD----PKVFLMGEEVGEYQGAYKISKGLLEKYGP--------ERVLDTPITEAGFTGIGVG 102 (270)
Q Consensus 35 ~~~~~~~a~~~~L~~~~~~d----~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp--------~R~id~GIaE~~~vg~AaG 102 (270)
-+..+|.++.++|.+.++.. .--+.|+=+.. ..|+ .+.+.|+++| | .+|.|.-+.|.. +..+
T Consensus 12 ~~~AlrgVvr~vL~~va~~g~LPg~HHFyITF~T~-~pGV-~i~~~L~~~Y-P~EMTIVLQhQF~dL~V~e~~---FsV~ 85 (176)
T 2nys_A 12 AQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTG-APGV-RISQHLKSKY-AEQMTIVIQHQFWDMKVTETG---FEIG 85 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESS-STTC-BCCHHHHHHS-SSEEEEEESSSCEEEEECSSE---EEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccEEEEEEecC-CCCc-cCCHHHHhhC-CCceEEEEEeeecCcEEecCc---EEEE
Confidence 35679999999999999977 34566665543 3444 4568899999 8 489999999987 7888
Q ss_pred HhhcCCccEEEee
Q 024237 103 AAYYGLKPVVEFM 115 (270)
Q Consensus 103 lA~~G~~Pi~~~~ 115 (270)
|+..|..--+++.
T Consensus 86 LsFgg~pe~L~IP 98 (176)
T 2nys_A 86 LSFSDTPEKLVIP 98 (176)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEeCCeeeEEEee
Confidence 8888865555554
No 90
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=38.14 E-value=40 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhc-CCCeee
Q 024237 239 KDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (270)
Q Consensus 239 ~dvtIva~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (270)
+.|+|.++|..+..||..|-.++++ +..++|
T Consensus 61 ~eV~v~GmGkAIeKal~lAl~fq~~~~~~V~V 92 (140)
T 3iab_B 61 SYVAVLGMGKAVEKTLALGCHFQDQKNKKIEV 92 (140)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred cEEEEEechHHHHHHHHHHHHHhhcCCEEEEE
Confidence 7899999999999999999999875 667665
No 91
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=37.40 E-value=13 Score=27.77 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.0
Q ss_pred EeCCcEEEEE-ech--hHHHHHHHHHHHHhcCCCeee
Q 024237 236 REGKDVTITA-FSK--IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 236 ~~G~dvtIva-~G~--~v~~al~Aa~~L~~~Gi~~~V 269 (270)
++|++|++++ .|. +.....+..+.+++.|+.++|
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~v 113 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEE
Confidence 5689999999 674 334555666667788999886
No 92
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=37.10 E-value=10 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.9
Q ss_pred eEeCCcEEEEEechhHH--HHHHHHHHHHhcCCCeee
Q 024237 235 EREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~--~al~Aa~~L~~~Gi~~~V 269 (270)
+.++-|++||++|.... .--+..+.|++.||.+++
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~ 94 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRV 94 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEE
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEE
Confidence 44567888999986443 233445678888888875
No 93
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=36.98 E-value=1.2e+02 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=22.5
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
.+|.+.| .=.|+.++..+++.+++ .++|++|-.
T Consensus 267 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 267 GIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4555443 23477888888888875 578998854
No 94
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=33.28 E-value=45 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.0
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHhcCC
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGI 265 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi 265 (270)
++.|..++|.+.|.--.+|+++-..|-+.+.
T Consensus 55 ~~~G~~i~i~a~G~De~~A~~~l~~l~~~~f 85 (88)
T 3le1_A 55 VSQGNVVKLSAEGDDEEEAIKALVDLIESKF 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHhcc
Confidence 4678999999999999999998887766654
No 95
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=33.21 E-value=12 Score=28.70 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=23.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 238 GKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
.-|+.||++|.... .--+..+.|++.||.+++
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~ 100 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDT 100 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEE
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEE
Confidence 36899999997542 223455678889998876
No 96
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=31.64 E-value=1e+02 Score=27.64 Aligned_cols=106 Identities=19% Similarity=0.011 Sum_probs=52.2
Q ss_pred ecccchhHHHHHHHHHhhc----C-CccEEEeehh-hHHHH-HHHHHHHHHhhccccCCCCCCCCEEEEec-CCCCCCCC
Q 024237 88 DTPITEAGFTGIGVGAAYY----G-LKPVVEFMTF-NFSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG 159 (270)
Q Consensus 88 d~GIaE~~~vg~AaGlA~~----G-~~Pi~~~~~~-~f~~r-a~dqi~~~~a~~~~~sg~~~~~pvi~~~~-~G~~~~~G 159 (270)
..|.-++ .+++|.|+|+. + -++++++.-- .|.+- .+|.+. .++. .++|++++.. ++ .+-.+
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~-~A~~--------~~lpvi~vv~NN~-~gi~~ 210 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGIN-FAAV--------QGAPAVFIAENNF-YAISV 210 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH-HHHH--------TTCSEEEEEEECS-EETTE
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHH-HHHH--------hCcCEEEEEecCC-eeecc
Confidence 4444443 34555565553 3 2344444321 23222 444453 3444 4789888765 34 22122
Q ss_pred CCC---cc-hHHHHHc--cCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 160 AQH---SH-CYAAWYA--SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 160 ~tH---~~-~~~a~lr--~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
++. +. .+..+.+ .+|.+.| .-.|..++..+++.+++ .++|++|-.
T Consensus 211 ~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 211 DYRHQTHSPTIADKAHAFGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp EHHHHCSSSCSGGGGGGTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ChhhccCCCCHHHHHHHcCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 211 01 1123333 4566654 44677777666666554 578999854
No 97
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=30.92 E-value=14 Score=28.80 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=23.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 238 GKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
.-|++||++|.... .--+..+.|++.||.+++
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~ 99 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDT 99 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEE
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEE
Confidence 36899999997542 222445678899998886
No 98
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=29.86 E-value=43 Score=31.62 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=57.8
Q ss_pred CCCeeeccc--chhHHHHHHHHHhhcC-C----ccEEEeehh-hHHHHHHHHHHHHHhhccccCCCCCCCCEEEEe-cCC
Q 024237 83 PERVLDTPI--TEAGFTGIGVGAAYYG-L----KPVVEFMTF-NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG 153 (270)
Q Consensus 83 p~R~id~GI--aE~~~vg~AaGlA~~G-~----~Pi~~~~~~-~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~-~~G 153 (270)
|.+|+..+- +=...++.|.|+|+.- . ++++++.-- .|.+ .+..+ +.+.. .++|++++. .++
T Consensus 403 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~-~~~el-~ta~~--------~~l~~~ivv~nN~ 472 (563)
T 2vk8_A 403 NTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQL-TVQEI-STMIR--------WGLKPYLFVLNND 472 (563)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHH-HGGGH-HHHHH--------TTCCCEEEEEESS
T ss_pred CCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhc-cHHHH-HHHHH--------cCCCcEEEEEECC
Confidence 445664211 2223457777777652 2 565555422 2222 34444 33444 477766654 333
Q ss_pred -CCC--C-CCCC------CcchHHHHHccCCCcE---EEccCCHHHHHHHHH-HhHhCC-CCeEEe
Q 024237 154 -AAA--G-VGAQ------HSHCYAAWYASVPGLK---VLSPYSSEDARGLLK-AAIRDP-DPVVFL 204 (270)
Q Consensus 154 -~~~--~-~G~t------H~~~~~a~lr~iPn~~---V~~P~d~~e~~~~l~-~a~~~~-~P~~ir 204 (270)
... . .|.. |...+..+.++. |+. .+.-.+.+|+..+++ .+++.+ +|++|-
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~v~~~~el~~al~~~a~~~~~~p~lie 537 (563)
T 2vk8_A 473 GYTIQKLIHGPKAQYNEIQGWDHLSLLPTF-GAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIE 537 (563)
T ss_dssp SCHHHHHHSCTTCGGGCCCCCCGGGHHHHT-TCSSEEEEEECBHHHHHHHHTCTTTTSCSSEEEEE
T ss_pred cchhhhhhhCCCCCcccCCCCCHHHHHHHh-CCCCCcEEEecCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 221 0 1211 211233444444 554 666778999999999 787754 688874
No 99
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=29.65 E-value=14 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=24.7
Q ss_pred eEeCCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 235 EREGKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
+..+-|++||++|.... .--+..+.|++.||.+++
T Consensus 61 l~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~ 96 (132)
T 2gm2_A 61 LALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEA 96 (132)
T ss_dssp HHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEE
T ss_pred HhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEE
Confidence 33457999999997543 223345678888998886
No 100
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=29.58 E-value=1.8e+02 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=23.8
Q ss_pred cCCCcEEEccCCHHHHHHHHHHhHh----CCCCeEEee
Q 024237 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (270)
Q Consensus 172 ~iPn~~V~~P~d~~e~~~~l~~a~~----~~~P~~ir~ 205 (270)
.+|++.| .=.|+.++..+++.+++ .++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4666654 44478999988888774 588999853
No 101
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei}
Probab=29.31 E-value=52 Score=29.58 Aligned_cols=66 Identities=8% Similarity=-0.044 Sum_probs=41.6
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||..++.+-+ .+++..+......|. +.+--|. -+|.+|+|+++|.....+--+
T Consensus 45 ~Vil~GDP~Rv~~ia~-~ld~~~~~~~~~~R~----------------~~~~tG~----ykG~~Vsv~stGmG~psaaI~ 103 (349)
T 3bje_A 45 RIIFVGDPGRVDVISG-YFDKDSIRASRDHRE----------------IRFATGT----YKGTPVTVISTGMGVDNIEIV 103 (349)
T ss_dssp EEEEESSTTHHHHHHT-TSCTTCCCEEEEETT----------------EEEEEEE----ETTEEEEEEECCSSHHHHHHH
T ss_pred eEEECCCHHHHHHHHH-HHhccccceEEeecC----------------eEEEEEE----ECCEEEEEEECCCCHHHHHHH
Confidence 5999999999987766 444433333322221 1111121 168899999999988877777
Q ss_pred HHHHHhc
Q 024237 257 AEILAKE 263 (270)
Q Consensus 257 a~~L~~~ 263 (270)
.++|-+.
T Consensus 104 ~~ELi~l 110 (349)
T 3bje_A 104 LNEIHAL 110 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 102
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=28.78 E-value=31 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=23.7
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 237 ~G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
+|+.|+||+||+.-+ .|+. |++.|+++.|
T Consensus 36 kgK~IaVIGyGsQG~AqAlN----LRDSGv~V~V 65 (491)
T 3ulk_A 36 QGKKVVIVGCGAQGLNQGLN----MRDSGLDISY 65 (491)
T ss_dssp TTSEEEEESCSHHHHHHHHH----HHHTTCEEEE
T ss_pred cCCEEEEeCCChHhHHHHhH----HHhcCCcEEE
Confidence 578999999999764 7776 7888998765
No 103
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=28.71 E-value=47 Score=25.79 Aligned_cols=32 Identities=6% Similarity=-0.132 Sum_probs=25.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCCee
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~ 268 (270)
+.+++++||-|..+--.+..++.|.+.|-++.
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~ 53 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVT 53 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEE
Confidence 35689999999999888888888877665544
No 104
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=28.53 E-value=48 Score=30.81 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.4
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeeeC
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
.|+.|+++|. ....|++.++.|.+.|+++++.
T Consensus 362 ~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~ 394 (456)
T 3lc0_A 362 VDDVVIPFDESMRPHALAVLRRLRDAGRSADII 394 (456)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCCEEEC
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 4788999996 4579999999999999999863
No 105
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=25.95 E-value=21 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=24.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhcCCCeee
Q 024237 238 GKDVTITAFSKIVG-LSLKAAEILAKEGISAEV 269 (270)
Q Consensus 238 G~dvtIva~G~~v~-~al~Aa~~L~~~Gi~~~V 269 (270)
+-|++||++|...+ .--+..+.|++.||.+++
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~ 120 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEA 120 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEE
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEE
Confidence 56899999997543 233456779999999886
No 106
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*
Probab=25.24 E-value=1.3e+02 Score=25.03 Aligned_cols=69 Identities=16% Similarity=0.010 Sum_probs=43.1
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||..++.+-++.++ ++..+...| ++.+-.|+. .|.+|+++.+|.....+--+
T Consensus 24 ~vl~~Gdp~R~~~iA~~~l~--~~~~~~~~r----------------~~~~~tG~~----~g~~V~v~~~G~G~~saai~ 81 (242)
T 3u40_A 24 TVLMAGDPLRVKLLADTYLT--DVVQYNSVR----------------GAVGYTGYY----KGVKLSVQAHGMGMPSIGIY 81 (242)
T ss_dssp EEEEESCHHHHHHHHHHHCE--EEEEEECGG----------------GCCEEEEEE----TTEEEEEEECCSSHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhh--CcEEEEEEC----------------CEEEEEEEE----CCEEEEEEeCCCCHHHHHHH
Confidence 69999999999887765554 222222111 111222321 57899999999877666555
Q ss_pred HHHH-HhcCCCe
Q 024237 257 AEIL-AKEGISA 267 (270)
Q Consensus 257 a~~L-~~~Gi~~ 267 (270)
.++| +..|++.
T Consensus 82 ~~eLi~~~gv~~ 93 (242)
T 3u40_A 82 AYELFNFYGVKR 93 (242)
T ss_dssp HHHHHHHSCCCE
T ss_pred HHHHHHHcCCCE
Confidence 6666 4467764
No 107
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=24.54 E-value=79 Score=22.25 Aligned_cols=30 Identities=30% Similarity=0.215 Sum_probs=24.1
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHh-cC
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAK-EG 264 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~-~G 264 (270)
++.|..++|.+.|.--.+|+++-..|-+ .|
T Consensus 55 ~~~g~~i~i~~~G~De~~A~~~l~~l~~~~~ 85 (88)
T 1ptf_A 55 VGQGSDVTITVDGADEAEGMAAIVETLQKEG 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 3578899999999999999988776654 44
No 108
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*
Probab=23.55 E-value=1.1e+02 Score=26.19 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=43.7
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||..++.+-+ .++ ++..+...| .+.+-.| .-.|.+|+++++|...+.+--+
T Consensus 19 ~vll~GdP~R~~~ia~-~l~--~~~~~~~~r----------------~~~~~tG----~~~G~~V~v~~~GiG~psaai~ 75 (275)
T 3phc_A 19 VVLVVGDPGRVDKIKV-VCD--SYVDLAYNR----------------EYKSVEC----HYKGQKFLCVSHGVGSAGCAVC 75 (275)
T ss_dssp EEEEESCHHHHHHHHT-TSS--EEEEEEEET----------------TEEEEEE----EETTEEEEEEECCSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHH-Hhc--cCeeeeeeC----------------CeEEEEE----EECCEEEEEEECCCChHHHHHH
Confidence 7899999999887663 222 333332111 1111112 1258899999999988888888
Q ss_pred HHHHHhcCCCe
Q 024237 257 AEILAKEGISA 267 (270)
Q Consensus 257 a~~L~~~Gi~~ 267 (270)
.++|.+.|++.
T Consensus 76 ~~eL~~~gv~~ 86 (275)
T 3phc_A 76 FEELCQNGAKV 86 (275)
T ss_dssp HHHHHTTTCCE
T ss_pred HHHHHHCCCCE
Confidence 88888777653
No 109
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=23.49 E-value=78 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhc
Q 024237 237 EGKDVTITAFSKIVGLSLKAAEILAKE 263 (270)
Q Consensus 237 ~G~dvtIva~G~~v~~al~Aa~~L~~~ 263 (270)
+|++|.|=|.|.....|...|+.|+..
T Consensus 25 ~g~eV~ikA~G~AIskAV~vaeilk~r 51 (87)
T 1nh9_A 25 SNDEVIIKARGKAINKAVDVAEMIRNR 51 (87)
T ss_dssp HCSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEechHHHHHHHHHHHHHHh
Confidence 568899999999999999999999875
No 110
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=23.40 E-value=4e+02 Score=28.08 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHcc--CCCcEEEcc-CCHHHHHHHHHHhHhCCCCeEEe
Q 024237 168 AWYAS--VPGLKVLSP-YSSEDARGLLKAAIRDPDPVVFL 204 (270)
Q Consensus 168 a~lr~--iPn~~V~~P-~d~~e~~~~l~~a~~~~~P~~ir 204 (270)
.+.++ ++++....+ .+++|+...++.+++.++|++|-
T Consensus 1026 ~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~~~GP~lI~ 1065 (1231)
T 2c42_A 1026 RMVMTYGYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVI 1065 (1231)
T ss_dssp HHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 44444 455555668 59999999999999999999995
No 111
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=23.39 E-value=67 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.0
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
++.|..++|.+.|.--.+|+++-..|-
T Consensus 54 ~~~G~~i~i~a~G~De~~Al~~l~~l~ 80 (88)
T 1pch_A 54 IKTGTEITIQADGNDADQAIQAIKQTM 80 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHH
Confidence 356889999999999999998866553
No 112
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=23.38 E-value=82 Score=22.15 Aligned_cols=30 Identities=33% Similarity=0.308 Sum_probs=24.1
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHh-cC
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAK-EG 264 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~-~G 264 (270)
++.|..++|.+.|.--.+|+++-..|-+ .|
T Consensus 55 ~~~g~~i~i~~~G~De~~A~~~l~~l~~~~~ 85 (88)
T 1sph_A 55 IAKGAEITISASGADENDALNALEETMKSEG 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 3578899999999999999988776655 44
No 113
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=23.01 E-value=1e+02 Score=22.68 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=20.9
Q ss_pred cEEEEEec---hhHHHHHHHHHHHHhcCCCeeeC
Q 024237 240 DVTITAFS---KIVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 240 dvtIva~G---~~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
+++++-.| +....+-++.+.|++.|++.+++
T Consensus 6 e~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~ 39 (104)
T 2ibo_A 6 ALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVT 39 (104)
T ss_dssp EEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEEC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEec
Confidence 35566555 45556667777788888887765
No 114
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=22.69 E-value=1.1e+02 Score=22.52 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred cEEEEEec---hhHHHHHHHHHHHHhcCCCeeeC
Q 024237 240 DVTITAFS---KIVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 240 dvtIva~G---~~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
+++|+-.| +.....-++.+.|++.|++.+++
T Consensus 19 ~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~ 52 (106)
T 1vk8_A 19 SIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVG 52 (106)
T ss_dssp EEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEEC
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeC
Confidence 45555555 44455556777788888888764
No 115
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=22.65 E-value=72 Score=28.13 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=26.3
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.|+.|.+.+|+..+++++-+.+-|++++-
T Consensus 51 ~vv~P~s~eev~~~l~~a~~~~~pv~~~G 79 (326)
T 1hsk_A 51 FYITPTKNEEVQAVVKYAYQNEIPVTYLG 79 (326)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 57899999999999999999888999874
No 116
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=22.49 E-value=76 Score=23.14 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCc--cccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF--CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 184 ~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~--~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
..-+..+.+.+-+.+..+.|.... ..+.-.+. -..+| ++.|..++|.+.|.--.+|+++-..|-
T Consensus 28 ARPAa~~v~~A~~f~s~I~i~~~~----------~~vdAKSIm~lmsLg----~~~G~~i~i~a~G~Dee~Al~~l~~li 93 (100)
T 1kkl_H 28 ARPATVLVQTASKYDADVNLEYNG----------KTVNLKSIMGVMSLG----IAKGAEITISASGADENDALNALEETM 93 (100)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEETT----------EEEETTCHHHHHHTC----CCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCeEEEEECC----------EEEecHhHHHHhcCC----CCCCCEEEEEEeCCCHHHHHHHHHHHH
Confidence 455666777777777777774221 01110010 01233 457889999999999999998876665
Q ss_pred hc-CC
Q 024237 262 KE-GI 265 (270)
Q Consensus 262 ~~-Gi 265 (270)
+. |.
T Consensus 94 ~~~~f 98 (100)
T 1kkl_H 94 KSERL 98 (100)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 43 53
No 117
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.48 E-value=2.4e+02 Score=26.10 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=50.2
Q ss_pred ccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec-ccccCCCCCCcccccCC-CccccCC---ceEEeEeCCcEEEEE
Q 024237 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN-ELLYGESFPVSAEVLDS-SFCLPIG---KAKIEREGKDVTITA 245 (270)
Q Consensus 171 r~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~-~~~~~~~~~~~~~~~~~-~~~~~~G---k~~vl~~G~dvtIva 245 (270)
...|. .|+.|.+.+|+..+++.+-+.+-|++++-. .++.+.. +++. ...+.+. +-.-+.+.+..+.|.
T Consensus 49 ~~~p~-~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~------~~~~ggvvIdl~~m~~i~~id~~~~~v~V~ 121 (476)
T 3pm9_A 49 RGHSP-LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ------TPHNGEVVISLKRMDKIREIDTSSNTITVE 121 (476)
T ss_dssp BCCCS-CEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT------CCCSSCEEEECTTCCCEEEEETTTTEEEEE
T ss_pred CCCCC-EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc------cCCCCcEEEEeeCCCceEEEcCCCCeEEEC
Confidence 33444 578999999999999999998899998742 1111111 1111 1112222 221233445566778
Q ss_pred echhHHHHHHHHHHHHhcCC
Q 024237 246 FSKIVGLSLKAAEILAKEGI 265 (270)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi 265 (270)
.|....+..++ |.++|.
T Consensus 122 aGv~~~~l~~~---l~~~Gl 138 (476)
T 3pm9_A 122 AGAILQRVQEK---AAEVDR 138 (476)
T ss_dssp TTCBHHHHHHH---HHHTTE
T ss_pred CCcCHHHHHHH---HHHhCC
Confidence 88888876665 445554
No 118
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=22.16 E-value=92 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=27.1
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeeeC
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVN 270 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V~ 270 (270)
.+|.|+..+. ....|++.++.|.+.|+.+++.
T Consensus 355 ~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d 387 (467)
T 4e51_A 355 VDVYVVHQGDAAREQAFIVAERLRDTGLDVILH 387 (467)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5898999886 4468999999999999999863
No 119
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}
Probab=22.09 E-value=55 Score=28.34 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=43.1
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||.+++.+-+.. + .+..+...| ++.+-.|+ -.|.+|+++.+|.....+--+
T Consensus 47 ~vil~Gdp~r~~~ia~~~-~--~~~~~~~~r----------------~~~~~tG~----~~g~~V~v~~~G~G~~~aa~~ 103 (282)
T 3qpb_A 47 YVIMPGDPKRCAKIAEHF-D--NAVLVADSR----------------EYVTYTGT----LNGEKVSVTSTGIGGPSASIA 103 (282)
T ss_dssp EEEEESCGGGHHHHHTTS-E--EEEEEEEET----------------TEEEEEEE----ETTEEEEEECCCSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHh-C--CCEEEeccC----------------CeeEEEEE----ECCEEEEEEeCCCCHHHHHHH
Confidence 799999999998776543 2 333222111 11111121 257889999999877777677
Q ss_pred HHHHHhcCCCe
Q 024237 257 AEILAKEGISA 267 (270)
Q Consensus 257 a~~L~~~Gi~~ 267 (270)
+++|.+.|++.
T Consensus 104 ~~~L~~~g~~~ 114 (282)
T 3qpb_A 104 MEELKLCGADT 114 (282)
T ss_dssp HHHHHHTTCCE
T ss_pred HHHHHHcCCCE
Confidence 77787777654
No 120
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=21.80 E-value=84 Score=28.30 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.7
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.+|.|+..+. ....|++.++.|.+.|+++++
T Consensus 330 ~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~ 361 (420)
T 1qe0_A 330 LDLFIVTMGDQADRYAVKLLNHLRHNGIKADK 361 (420)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4788888874 557889999999999999876
No 121
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=21.60 E-value=83 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=23.0
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHh
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAK 262 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~ 262 (270)
++.|..++|.+.|.--.+|+++-..|-+
T Consensus 55 ~~~g~~i~i~~~G~De~~A~~~l~~l~~ 82 (88)
T 1y51_A 55 IPKGATIKITAEGADAAEAMAALTDTLA 82 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4578899999999999999988766654
No 122
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=21.02 E-value=77 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=24.2
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHHh-cCC
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILAK-EGI 265 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~~-~Gi 265 (270)
++.|..++|.+.|.--.+|+++-..|-+ +|.
T Consensus 55 ~~~G~~i~i~a~G~De~~A~~~l~~l~~~~~~ 86 (88)
T 1ka5_A 55 VGKDAEITIYADGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp CCTTCEEEEEEESSSHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999988666644 453
No 123
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=20.94 E-value=81 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.6
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEee
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~ 205 (270)
.++.|.+.+|+..+++++-+.+-|++++-
T Consensus 57 ~vv~P~s~eev~~~v~~a~~~~~pv~v~G 85 (322)
T 3tx1_A 57 VFVMPKTIEEAQEVVAYCHQNKIPLTILG 85 (322)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 68999999999999999999888999873
No 124
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}
Probab=20.87 E-value=1.4e+02 Score=25.71 Aligned_cols=68 Identities=12% Similarity=-0.054 Sum_probs=43.7
Q ss_pred EEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHH
Q 024237 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (270)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~A 256 (270)
.|+.|.||..++.+-+ .+ +++..+...|. +.+-.| .-.|.+|+++++|...+.+--+
T Consensus 23 ~vll~GdP~R~~~iA~-~l--~~~~~~~~~r~----------------~~~ytG----~~~G~~V~v~~~GiG~psaai~ 79 (279)
T 3mb8_A 23 VVIIVGDPARTEEVAN-MC--EKKQELAYNRE----------------YRSFRV----VYDSQPITVISHGIGCPGTSIA 79 (279)
T ss_dssp EEEEESSHHHHHHHHT-TS--SEEEEEEEETT----------------EEEEEE----EETTEEEEEEECCSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHH-Hh--ccceeeeeecC----------------eEEEEE----EECCEEEEEEECCCCHHHHHHH
Confidence 7899999999887652 22 23333321111 111112 1257899999999988888878
Q ss_pred HHHHHhcCCCe
Q 024237 257 AEILAKEGISA 267 (270)
Q Consensus 257 a~~L~~~Gi~~ 267 (270)
.++|.+.|++.
T Consensus 80 ~~eLi~~gv~~ 90 (279)
T 3mb8_A 80 IEELAYLGAKV 90 (279)
T ss_dssp HHHHHHTTCCE
T ss_pred HHHHHHCCCCE
Confidence 88888777654
No 125
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.85 E-value=56 Score=29.65 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=27.3
Q ss_pred EeEeCCcEEEEEechhH-----HHHHHHHHHHHhcCCCeee
Q 024237 234 IEREGKDVTITAFSKIV-----GLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 234 vl~~G~dvtIva~G~~v-----~~al~Aa~~L~~~Gi~~~V 269 (270)
-+++|+.|.|||..+-+ ....++.+.|++.|.++.+
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~ 79 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVS 79 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE
Confidence 47789999999987644 2344667789999988764
No 126
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.65 E-value=81 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.5
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhcCCCee
Q 024237 239 KDVTITAFS----KIVGLSLKAAEILAKEGISAE 268 (270)
Q Consensus 239 ~dvtIva~G----~~v~~al~Aa~~L~~~Gi~~~ 268 (270)
.+|+|++.+ ..-+.|.+|.+.|++.||+.+
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~ 51 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFE 51 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcE
Confidence 457777766 356677777777777777654
No 127
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=20.41 E-value=85 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=26.9
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCCeee
Q 024237 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 239 ~dvtIva~G~-~v~~al~Aa~~L~~~Gi~~~V 269 (270)
.+|.|++.+. ....|++.++.|.+.||++++
T Consensus 420 ~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~ 451 (517)
T 4g85_A 420 TQVLVASAQKKLLEERLKLVSELWDAGIKAEL 451 (517)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 4788888875 567899999999999999986
No 128
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.21 E-value=1.1e+02 Score=21.71 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~ 206 (270)
---+-||-.|-......|++.+++++-+++.|.+++.+
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvn 59 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVN 59 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEec
Confidence 34467999999999999999999999888889998754
No 129
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.19 E-value=90 Score=30.34 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=53.3
Q ss_pred HHccCCCcEEEccCCHHHHHHHHHHhHhCCCCeEEeec-ccccCCCCCCcccccCCCcccc---CCceEEeEeCCcEEEE
Q 024237 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN-ELLYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTIT 244 (270)
Q Consensus 169 ~lr~iPn~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~-~~~~~~~~~~~~~~~~~~~~~~---~Gk~~vl~~G~dvtIv 244 (270)
.++.+|.. |+.|.+.+|+..++++|-+++-|++.|-. .++.+...+..... ...-.+. +.+-.-+.+.+..+.|
T Consensus 201 ~~~~~P~a-VV~P~s~eeV~~iv~~A~~~~ipVvprGgGTsl~GG~~~~~~~~-~ggVvLDlsrMnrIleiD~~~~~atV 278 (658)
T 4bby_A 201 MFERIPDI-VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADET-RTIISLDTSQMNRILWVDENNLTAHV 278 (658)
T ss_dssp CCSCCCSE-EEECCSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTCCCTTCC-SCEEEEECTTCCCEEEEETTTTEEEE
T ss_pred cccCCcCE-EEeeCCHHHHHHHHHHHHHCCCeEEEECCCcCCCCCCCCCCCCC-CcEEEEECccCCCcEEEcCCCCEEEE
Confidence 45667765 78899999999999999999999998732 22111111100000 0001122 2222223446667778
Q ss_pred EechhHHHHHHHHHHHHhcCC
Q 024237 245 AFSKIVGLSLKAAEILAKEGI 265 (270)
Q Consensus 245 a~G~~v~~al~Aa~~L~~~Gi 265 (270)
--|....+..++ |++.|.
T Consensus 279 eaGv~~~~L~~~---L~~~Gl 296 (658)
T 4bby_A 279 EAGITGQELERQ---LKESGY 296 (658)
T ss_dssp ETTCBHHHHHHH---HHHHTE
T ss_pred ecCchHHHHHHH---HHHcCC
Confidence 888888776655 455553
No 130
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=20.04 E-value=83 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=22.1
Q ss_pred eEeCCcEEEEEechhHHHHHHHHHHHH
Q 024237 235 EREGKDVTITAFSKIVGLSLKAAEILA 261 (270)
Q Consensus 235 l~~G~dvtIva~G~~v~~al~Aa~~L~ 261 (270)
++.|..++|.+.|.--.+|+++-..|-
T Consensus 55 ~~~G~~i~i~~~G~De~~A~~~l~~~~ 81 (85)
T 3ccd_A 55 LTQGTVVTISAEGEDEQKAVEHLVKLM 81 (85)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHH
Confidence 457889999999999889888766553
No 131
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=20.03 E-value=46 Score=27.97 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcCCCeee
Q 024237 250 VGLSLKAAEILAKEGISAEV 269 (270)
Q Consensus 250 v~~al~Aa~~L~~~Gi~~~V 269 (270)
+++.++|+++|+++||++-+
T Consensus 96 T~eGl~A~~~L~~~GI~vN~ 115 (223)
T 1wx0_A 96 TEEGLKACKRLSAEGIKVNM 115 (223)
T ss_dssp SHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHCCCcEEE
Confidence 37999999999999998765
Done!