RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024237
(270 letters)
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 446 bits (1149), Expect = e-159
Identities = 145/245 (59%), Positives = 186/245 (75%)
Query: 25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
+ ++ Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3 GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62
Query: 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
R++DTPI+E GF GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G V
Sbjct: 63 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122
Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
PIVFRGPNGA+AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182
Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
ENEL+YG F E F +PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242
Query: 265 ISAEV 269
+ EV
Sbjct: 243 VECEV 247
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 341 bits (877), Expect = e-118
Identities = 100/234 (42%), Positives = 137/234 (58%), Gaps = 3/234 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
EV + + +PIGKA I+REGKD+TI A+ +V SLKAA L KEGISAEV
Sbjct: 179 FRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEV 232
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 336 bits (863), Expect = e-116
Identities = 105/234 (44%), Positives = 149/234 (63%), Gaps = 3/234 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
M + +ALN ALDEEM+ DP+V ++GE+VG+ G + +++GLL+KYGP+RV+DTP++EA
Sbjct: 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 62
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G +G A +GL+PV E ++ D +++ AK Y S GQ + P+V R P+G
Sbjct: 63 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 122
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
G HS A + GLKV++ + DA+GLLKAAIRD DPVVFLE + LY
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVK- 181
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
EV + + LPIGKA + REGKD+T+ + ++ L+AA LAK G+SAEV
Sbjct: 182 --EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 316 bits (812), Expect = e-108
Identities = 97/239 (40%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
+ V + +A+N AL EEM D +V ++GE+VG+ G + +++GL E++GPERV+DTP
Sbjct: 45 AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 104
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
+ E G G +G A GLKPV E +F D ++N AK Y S G P+V R
Sbjct: 105 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 164
Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
P G+ G HS+ A + PGL V+ P + +A+GLLKAAIR DPVVFLE ++LY
Sbjct: 165 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 224
Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
EV + + + IGKA++ REG DVT+ + +V +L+AAE + S EV
Sbjct: 225 RAPR---EEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEV 277
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 301 bits (773), Expect = e-102
Identities = 88/250 (35%), Positives = 130/250 (52%), Gaps = 16/250 (6%)
Query: 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
A M + +AL SA+D + D V + G++VG + G ++ ++GL KYG RV D PI+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
E+G G VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
G G HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180
Query: 213 SFPVS-------------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
F + V D + +P+ KA I R G DV++ + V ++ AAE
Sbjct: 181 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 239
Query: 260 LAKEGISAEV 269
+ G+ AEV
Sbjct: 240 --ESGVDAEV 247
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 290 bits (746), Expect = 2e-98
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 6/241 (2%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV +TP
Sbjct: 15 YGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTP 73
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFR 149
+ E G G G+G A G + E ++ A D I+N AAK Y S + + R
Sbjct: 74 LCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR 133
Query: 150 GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELL 209
P G HS A++A PG+KV+ P S A+GLL + I D +P +F E ++L
Sbjct: 134 SPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKIL 193
Query: 210 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-KEGISAE 268
Y + EV + +P+ +A++ +EG DVT+ A+ V + + A + K G+S E
Sbjct: 194 YRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 250
Query: 269 V 269
V
Sbjct: 251 V 251
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 59.4 bits (145), Expect = 2e-10
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 43/198 (21%)
Query: 83 PERVLDTPITE---AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYM 137
P R LD I E G A G++PVV + TF +Q A D +++ A +
Sbjct: 363 PHRYLDVGIAEEVAVTTAA---GMALQGMRPVVAIYSTF---LQRAYDQVLHDVAIEH-- 414
Query: 138 SSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189
+ + F R AG+ GA H+ + ++ S+PG+++ P + + RG
Sbjct: 415 ------LNVTFCIDR------AGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRG 462
Query: 190 LLKAAIRDPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFS 247
+LK A P Y G + V A L G+ + + G DV I A
Sbjct: 463 MLKYAQTHDGPFAIR-----YPRGNTAQVPAGTWPD---LKWGEWERLKGGDDVVILAGG 514
Query: 248 KIVGLSLKAAEILAKEGI 265
K + +LKAAE L G+
Sbjct: 515 KALDYALKAAEDLPGVGV 532
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 51.0 bits (123), Expect = 2e-07
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 52/198 (26%)
Query: 83 PERVLDTPITE-------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAK 133
P+R D I E AG A G KP+V + TF +Q A D +++ A
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGL-------AIGGYKPIVAIYSTF---LQRAYDQVLHDVAI 409
Query: 134 SNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSE 185
+P++F R AG+ G H + ++ +P + +++P
Sbjct: 410 QK--------LPVLFAIDR------AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDEN 455
Query: 186 DARGLLKAAIR-DPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVT 242
+ R +L + P Y G + V L+ LPIGK ++R G+ +
Sbjct: 456 ECRQMLYTGYHYNDGPSAVR-----YPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLA 507
Query: 243 ITAFSKIVGLSLKAAEIL 260
I F ++ + K AE L
Sbjct: 508 ILNFGTLMPEAAKVAESL 525
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 42.2 bits (100), Expect = 1e-04
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL----ENELLYGESFPVSAEVLDSSFCL 227
SVP V P ++ A EN ++Y +
Sbjct: 437 SVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNED-----------F 485
Query: 228 PIGKAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEV 269
+G+AK+ + K VT+ + +L AAE+L KE I+ V
Sbjct: 486 QVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRV 529
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 56/327 (17%), Positives = 92/327 (28%), Gaps = 99/327 (30%)
Query: 14 GSPVARIRPVVSNLRNYSSAVKQMMVREALN-------SALDEE---------------- 50
V+ + L + + Q V E L S + E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 51 -MSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIG----VGAA 104
+ D +VF V Q K+ + LLE + ++D G G G
Sbjct: 118 RLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKTWVALDV 170
Query: 105 Y--YGLKPVVEFMTF--NFS-----------MQAIDHIINSAAKSNYMSSGQISVPIVFR 149
Y ++ ++F F N +Q + + I+ N+ S S I R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLR 226
Query: 150 GPNGAAAGV-----GAQHSHCYA----AWYASV-----PGLKVL--SPYSS-EDARGLLK 192
+ A + + +C A K+L + + D L
Sbjct: 227 -IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LS 282
Query: 193 AAIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLP-------------IGKAKIEREG 238
AA + L E + + LD LP I ++ R+G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDG 340
Query: 239 -------KDVTITAFSKIVGLSLKAAE 258
K V + I+ SL E
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 35.2 bits (80), Expect = 0.022
Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 37/163 (22%)
Query: 60 MGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119
M E GE+Q YK +L + V + + K V +
Sbjct: 7 MDFETGEHQYQYK---DILSVFEDAFVDN-----------------FDCKDVQDMPKSIL 46
Query: 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV------ 173
S + IDHII S K + ++ ++ + V Y + S
Sbjct: 47 SKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQR 103
Query: 174 -PGLKVLSPYSSE------DARGLLKAAIRDPDPVVFLENELL 209
P + Y + D + K + P + L LL
Sbjct: 104 QPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Score = 33.3 bits (75), Expect = 0.091
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMG---EEVGEYQGAYKISKGLLEKYGPERVLD---- 88
++V + +L E+ + + + E + + Y + + +++ Y + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 89 TPITEAG--FTGIGVGAAYYGLKPVVE----------FMTFNFSMQAIDH 126
P ++ IG + LK + F+ F F Q I H
Sbjct: 465 IPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 42/246 (17%), Positives = 77/246 (31%), Gaps = 89/246 (36%)
Query: 27 LRNYSSAVKQMM--VREALNSALDEEMSADP-KVF-LMGEEVGEYQGA-----------Y 71
++NY +A + NSAL + ++ + G G QG Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---G--QGNTDDYFEELRDLY 177
Query: 72 KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHII--- 128
+ L+ I + L F+ Q ++ I+
Sbjct: 178 QTYHVLVGDL---------IKFSA-------ETLSELIRTTLDAEKVFT-QGLN-ILEWL 219
Query: 129 ---NSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSE 185
++ +Y+ S IS P++ GV Q +H Y K+L ++
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLI---------GV-IQLAH-----YVVT--AKLLG-FTPG 261
Query: 186 DARGLLKAAIRDPDPVV-------------FLEN-----ELLY--G----ESFP---VSA 218
+ R LK A +V F + +L+ G E++P +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 219 EVLDSS 224
+L+ S
Sbjct: 322 SILEDS 327
Score = 31.6 bits (71), Expect = 0.36
Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 102/206 (49%)
Query: 13 GGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK 72
GG RIR NYS+ M+ E + +D ++ + K+F +E+ E
Sbjct: 1677 GGEKGKRIR------ENYSA-----MIFE---TIVDGKLKTE-KIF---KEINE-----H 1713
Query: 73 ISKGLLEKYGPERVLD-TPITE-AGFTGIGVGAAYY------GLKPVV---------EF- 114
+ + +L T T+ A + A + GL P E+
Sbjct: 1714 STSYTFR--SEKGLLSATQFTQPALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 115 --------MTF--------------------------NFSMQAID--------------H 126
M+ N+ M AI+ +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 127 IINSAAKS--------NYMSSGQISV 144
++ K NY Q V
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYV 1854
Score = 30.0 bits (67), Expect = 0.95
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 22 PVV-----SNLRNYSSAVKQMMVREALNSALDEEMSADPK---VFLMGEEVGEYQGAYKI 73
PV S+LR S ++ + +V + + E + K + G G G +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVL 515
Query: 74 SKGLLEKYGPERV-----LDT-PITEAGF 96
+ + G RV LD P + GF
Sbjct: 516 THRNKDGTG-VRVIVAGTLDINPDDDYGF 543
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 30.9 bits (71), Expect = 0.45
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
+ +TI A V L++K A K+GI V
Sbjct: 546 DNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNV 580
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 30.3 bits (69), Expect = 0.46
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER 236
S++ R + + D D + + ++ F V+ E + I +
Sbjct: 60 LSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKG 113
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 30.5 bits (70), Expect = 0.54
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
E + T+ A V L L++A L K+G + V
Sbjct: 522 ESKEAKFTLLASGSEVWLCLESANELEKQGFACNV 556
>2bpa_1 Protein (subunit of bacteriophage PHIX174); protein-DNA complex,
single strand, icosahedral virus, virus/DNA complex;
HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP:
b.121.5.1 PDB: 1al0_F* 1cd3_F 1m06_F* 1m0f_F 1rb8_F*
Length = 426
Score = 30.5 bits (68), Expect = 0.63
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 79 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS 138
K+ + V TP+ TG AA+ G Q +I N+ K+ +M
Sbjct: 82 IKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWM- 140
Query: 139 SGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDA 187
N A G + H W A +P LS +
Sbjct: 141 --PDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTST 187
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.00
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 31/93 (33%)
Query: 77 LLEKYGPERVLDTPITEAGFTGIGVG---------AAYYGLKPVVEFMTFNFSMQAIDHI 127
+ + V +G G+G + +PV + +
Sbjct: 1035 MYKYVHVSEV-------GNCSGSGMGGVSALRGMFKDRFKDEPV-------QNDILQESF 1080
Query: 128 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
IN+ MS+ + I GP VGA
Sbjct: 1081 INT------MSAWVNMLLISSSGPIKTP--VGA 1105
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 29.7 bits (68), Expect = 1.1
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
+ E + A V L+L+A +L ++G+ V
Sbjct: 538 DVEEPQGVLVATGSEVHLALRAQALLREKGVRVRV 572
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 29.8 bits (68), Expect = 1.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
V L++KA E LA++GI+A V
Sbjct: 609 VELAMKAVEPLAQQGIAARV 628
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 29.4 bits (67), Expect = 1.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
+ ++ KAA+ L KEG + V
Sbjct: 574 LEIAAKAADELRKEGKTVRV 593
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 29.4 bits (67), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
V L++ A +LA I A V
Sbjct: 596 VQLAVAAQTLLADNDILARV 615
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 29.4 bits (67), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
V LS++AA+ LA + I A V
Sbjct: 566 VSLSVEAAKTLAAKNIKARV 585
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
V L++ A E L EG+ A V
Sbjct: 561 VELAVAAYEKLTAEGVKARV 580
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 29.4 bits (67), Expect = 1.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 250 VGLSLKAAEILAKEGISAEV 269
V L+++A + LA +G+ A V
Sbjct: 588 VSLAVEAQKALAVDGVDASV 607
>1m3y_A The major capsid protein of PBCV-1, VP54; major capsit protein
VP54, jelly RO glycoprotein, viral protein; HET: NDG MAN
NAG; 2.00A {Paramecium bursaria chlorella virus 1} SCOP:
b.121.2.3 b.121.2.3 PDB: 1j5q_A* 3kk5_A 1m4x_A
Length = 413
Score = 28.7 bits (62), Expect = 2.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 118 NFSMQAIDHIINSAAKSNYMSSGQIS 143
NF++++I IN + S QIS
Sbjct: 12 NFAIESIQQTINGSVGFGNKVSTQIS 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.7
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 179 LSPYSSEDARGL-LKAAI 195
L Y+ + A L +KA +
Sbjct: 29 LKLYADDSAPALAIKATM 46
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 26.5 bits (58), Expect = 5.3
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 152 NGAAAGVGAQHSHCY--------AAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197
N A G + H + W V G P+ E+ R A I +
Sbjct: 81 NIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRT-FAARIME 133
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 27.1 bits (60), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 249 IVGLSLKAAEILAKE-GISAEV 269
I+ +AAEILAK+ G+ ++V
Sbjct: 734 ILRHVREAAEILAKDYGVGSDV 755
>3rao_A Putative luciferase-like monooxygenase; unknown, structural
genomics, PSI-biology, midwest center FO structural
genomics, MCSG, enzyme; 2.30A {Bacillus cereus}
Length = 371
Score = 27.0 bits (60), Expect = 7.5
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 202
+ G + V H+ Y +V + V ED + K +P
Sbjct: 201 KLYAGGESKRGKEVIVNHADAYVMHGGTVEEVSVK----IEDMKNRRKKVTEEPLQSF 254
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 26.8 bits (60), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 127 IINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
++N M+SG +S+ F+GPN AA
Sbjct: 154 LVN-------MASGHVSMKYGFQGPNHAAV 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,280,996
Number of extensions: 273320
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 58
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.1 bits)