RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024237
(270 letters)
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 193 bits (491), Expect = 1e-62
Identities = 122/191 (63%), Positives = 150/191 (78%)
Query: 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E
Sbjct: 2 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61
Query: 95 GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
GF GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G VPIVFRGPNGA
Sbjct: 62 GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121
Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
+AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181
Query: 215 PVSAEVLDSSF 225
E F
Sbjct: 182 EFPPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 187 bits (477), Expect = 2e-60
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%)
Query: 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
A M + +AL SA+D + D V + G++VG + G ++ ++GL KYG RV D PI+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
E+G G VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
G G HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180
Query: 213 SFPVSAEVLDSSFCLPIGK--AKIEREG 238
F + P K +G
Sbjct: 181 PF----DGHHDRPVTPWSKHPHSAVPDG 204
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 183 bits (465), Expect = 1e-58
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 3/194 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178
Query: 216 VSAEVLDSSFCLPI 229
EV + + +PI
Sbjct: 179 FRQEVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 165 bits (419), Expect = 8e-52
Identities = 77/180 (42%), Positives = 108/180 (60%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
+ V + +A+N AL EEM D +V ++GE+VG+ G + +++GL E++GPERV+DTP
Sbjct: 2 AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 61
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
+ E G G +G A GLKPV E +F D ++N AK Y S G P+V R
Sbjct: 62 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 121
Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
P G+ G HS+ A + PGL V+ P + +A+GLLKAAIR DPVVFLE ++LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 164 bits (415), Expect = 5e-51
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)
Query: 30 YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89
++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV +T
Sbjct: 13 EYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNT 71
Query: 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVF- 148
P+ E G G G+G A G + E ++ A D I+N AAK Y S + +
Sbjct: 72 PLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTI 131
Query: 149 RGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENEL 208
R P G HS A++A PG+KV+ P S A+GLL + I D +P +F E ++
Sbjct: 132 RSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKI 191
Query: 209 LY---GESFPV 216
LY E P+
Sbjct: 192 LYRAAAEEVPI 202
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 149 bits (378), Expect = 1e-45
Identities = 80/176 (45%), Positives = 114/176 (64%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
M + +ALN ALDEEM+ DP+V ++GE+VG+ G + +++GLL+KYGP+RV+DTP++EA
Sbjct: 2 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G +G A +GL+PV E ++ D +++ AK Y S GQ + P+V R P+G
Sbjct: 62 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYG 211
G HS A + GLKV++ + DA+GLLKAAIRD DPVVFLE + LY
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 49.4 bits (117), Expect = 3e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
+PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG+ EV
Sbjct: 2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 44
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 44.7 bits (105), Expect = 1e-06
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAE 258
+ +P+ +A++ +EG DVT+ A+ V + + A
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS 35
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 44.3 bits (104), Expect = 1e-06
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN 270
+ +P+ KA I R G DV++ + V ++ + G+ AEV
Sbjct: 2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQ---VAAEESGVDAEVI 44
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 44.4 bits (104), Expect = 2e-06
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN 270
+ LPIGKA + REGKD+T+ + ++ L+AA LAK G+SAEV
Sbjct: 2 YTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVL 47
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 44.0 bits (103), Expect = 2e-06
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL 260
+ + IGKA++ REG DVT+ + +V +L+AAE +
Sbjct: 2 YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERV 37
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 43.6 bits (102), Expect = 3e-06
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN 270
GKA I+REGKD+TI A+ +V SLKAA L KEGISAEV
Sbjct: 1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVV 41
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 37.5 bits (86), Expect = 8e-04
Identities = 20/166 (12%), Positives = 38/166 (22%), Gaps = 9/166 (5%)
Query: 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99
R+A +A++ P+ ++ + + + + E G T I
Sbjct: 26 RKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAI 85
Query: 100 GVGA-AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV 158
G + G P + Q V + G
Sbjct: 86 ANGISLHGGFLPYTSTFLMFVEYARNAVRMA-------ALMKQRQVMVYTHDSIGLGEDG 138
Query: 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD-PVVF 203
A P + P ++ K + D P
Sbjct: 139 PTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL 184
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 26.9 bits (59), Expect = 2.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 158 VGAQHSHCYAAWYASVPGLKVL 179
VGA S A++ + G++V
Sbjct: 8 VGAGFSGAETAFWLAQKGVRVG 29
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 26.7 bits (59), Expect = 3.0
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 79 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS 138
K+ + V TP+ TG AA+ G Q +I N+ K+ +M
Sbjct: 82 IKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWM- 140
Query: 139 SGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSP 181
N A G + H W A +P LS
Sbjct: 141 --PDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSR 181
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 26.3 bits (56), Expect = 3.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 158 VGAQHSHCYAAWYASVPGLKVL 179
+G + C + SV G KVL
Sbjct: 11 LGTGITECILSGLLSVDGKKVL 32
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 26.1 bits (56), Expect = 5.0
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 206 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
E + P + + LP+ + D ITA +I G
Sbjct: 332 RERFPTLTLPDTEWNSERICSLPLF-PDMTESDFDRVITALHQIAG 376
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 24.3 bits (53), Expect = 5.4
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 6 RQKVAAGGGSPVARIRPVVSNLRNYSSAVKQM 37
++++AAG G V + ++ + +K+M
Sbjct: 38 KRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh
{Thermus aquaticus [TaxId: 271]}
Length = 100
Score = 24.9 bits (54), Expect = 5.7
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 6 RQKVAAGGGSPVARIRPVVSNLRNYSSAVKQM 37
R+++A G G+ V + + + +K +
Sbjct: 67 RKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 98
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 25.9 bits (57), Expect = 6.6
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 55 PKVFLMGEEVGEYQG----AYKISKGLLEKYGPERVLDTPITEAG-FTGIG 100
PK + G ++ Y S LE+ +++ P+T G F I
Sbjct: 552 PKEGEIDPIKGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCGCFEAIM 602
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 995,152
Number of extensions: 46551
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 22
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)