BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024238
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 137/170 (80%), Gaps = 5/170 (2%)
Query: 62 PHQLAYQQAQHFHHQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADED 121
P QLA+ Q QQQQQ QQLQ FW NQ +EIE+T DFKNHSLPLARIKKIMKADED
Sbjct: 38 PGQLAFHQIHQ--QQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADED 95
Query: 122 VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 181
VRMISAEAPV+FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI
Sbjct: 96 VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 155
Query: 182 IPRDELKEEGLG-VTKGALPVVGSPGDMPLYYVPP-QHPVGHTGMIMGKP 229
+PR++L++E LG + +G +P + G P Y+P P+G+ GM+MG P
Sbjct: 156 VPREDLRDEVLGSIPRGTVPEAAAAG-YPYGYLPAGTAPIGNPGMVMGNP 204
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/179 (60%), Positives = 128/179 (71%), Gaps = 14/179 (7%)
Query: 88 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR 147
FW Q +EIE+T DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLR
Sbjct: 52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 111
Query: 148 SWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVGSPGD 207
SW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG G +
Sbjct: 112 SWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG---GVGAEAATAAG 168
Query: 208 MPLYYVPP-QHPVGHTGMIMGKPVDQAALYSGQQPRPPVAFMPWPQSQSQAQQQQQPQQ 265
P Y+PP P+G+ GM+MG P Y PP +M P Q +QQ P
Sbjct: 169 YPYGYLPPGTAPIGNPGMVMGNP----GAY------PPNPYMGQPMWQQPGPEQQDPDN 217
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/156 (69%), Positives = 127/156 (81%), Gaps = 1/156 (0%)
Query: 74 HHQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIF 133
+H QQQQQQLQ+FW+ Q QEIEQ DFKNH LPLARIKKIMKADEDVRMISAEAP++F
Sbjct: 33 YHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILF 92
Query: 134 AKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG 193
AKACE+FILELT+RSW+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E
Sbjct: 93 AKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA-A 151
Query: 194 VTKGALPVVGSPGDMPLYYVPPQHPVGHTGMIMGKP 229
V G + V + +P YY P P G GM++G+P
Sbjct: 152 VLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRP 187
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/197 (58%), Positives = 141/197 (71%), Gaps = 7/197 (3%)
Query: 44 PAVAVPSPTQPPSTFASSPHQLAYQQAQHFHHQQQQQQQQQLQMFWSNQMQEIEQTADFK 103
P AV + PP + ++S + +HH QQQQQQ QMFW+ Q QEIEQ DFK
Sbjct: 20 PGSAVTTVIPPPPSGSAS---IVTGGGATYHHLLQQQQQQL-QMFWTYQRQEIEQVNDFK 75
Query: 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKN 163
NH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKN
Sbjct: 76 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 135
Query: 164 DIAAAISRTDVFDFLVDIIPRDELKEE--GLGVTKGALPVVGSPGDMPLYYVPPQHPVGH 221
DIAAAI+RTD+FDFLVDI+PR+E+KEE G V + +P YY P P
Sbjct: 136 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPAVP 195
Query: 222 TGMIMGKP-VDQAALYS 237
GM++G+P +D + +Y+
Sbjct: 196 GGMMIGRPAMDPSGVYA 212
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 94/116 (81%)
Query: 73 FHHQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVI 132
F +Q Q + +L FWS+Q+++I +T DFK H LPLARIKKIMK+D+DV IS+EAP++
Sbjct: 237 FQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPIL 296
Query: 133 FAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FAKACE+ ILE+T RSW+HTE NKRRTLQ+ DI ++SR + FDFL+D++PRDE+K
Sbjct: 297 FAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 82 QQQLQMFWSNQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
QQ LQ FW M+EI DF+ LPLARIKKIMK DEDV+MISAEAPV+FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 82 QQQLQMFWSNQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
QQ LQ FW M+EI DF+ LPLARIKKIMK DEDV+MISAEAPV+FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 82 QQQLQMFWSNQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
QQ LQ FW M+EI DF+ LPLARIKKIMK DEDV+MISAEAPV+FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 82 QQQLQMFWSNQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
QQ LQ FW M+EI DF+ LPLARIKKIMK DEDV+MISAEAPV+FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 82 QQQLQMFWSNQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
QQ LQ FW M+EI DF+ LPLARIKKIMK DEDV+MISAEAPV+FAKA ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%), Gaps = 16/165 (9%)
Query: 84 QLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILE 143
QL+ +W QM E +DFKN LPLARIKKIMKAD DV M+SAEAP+IFAKACEMFI++
Sbjct: 35 QLRNYWIEQM---ETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVD 91
Query: 144 LTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVG 203
LT+RSW+ EENKR TLQK+DI+ A++ + +DFL+D++P+D E + +
Sbjct: 92 LTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKD----ESIATADPGFVAMP 147
Query: 204 SP--GDMPLYYVPPQHPVGHTGMIMGKPVDQAALYSGQQPRPPVA 246
P G +P YY PP G++MG P+ + +Y+ Q P A
Sbjct: 148 HPDGGGVPQYYYPP-------GVVMGTPMVGSGMYAPSQAWPAAA 185
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 92/160 (57%), Gaps = 64/160 (40%)
Query: 85 LQMFWSNQMQEIEQTADFKNHSLPLARIK------------------------------K 114
LQMFW+NQMQEIE T DFKNH+LPLARIK
Sbjct: 55 LQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILE- 113
Query: 115 IMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDV 174
LTLR+WIHTEENKRRTLQKNDIAAAISRTDV
Sbjct: 114 -----------------------------LTLRAWIHTEENKRRTLQKNDIAAAISRTDV 144
Query: 175 FDFLVDIIPRDELKEEGLGVTKGALP-VVGSPGDMPLYYV 213
FDFLVDIIPRDELKEEGLGVTKG +P VVGSP P YY+
Sbjct: 145 FDFLVDIIPRDELKEEGLGVTKGTIPSVVGSP---PYYYL 181
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%), Gaps = 8/105 (7%)
Query: 88 FWSNQMQEIEQTA--------DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEM 139
+W + EIE T DFK+HSLP ARI+K+MK DEDV+MISAEAP+IFAKACE+
Sbjct: 133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEI 192
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPR 184
FI ELT+R+W E NKRRTLQK DIA A+ ++D+FDFL+D++PR
Sbjct: 193 FITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPR 237
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 119/194 (61%), Gaps = 20/194 (10%)
Query: 69 QAQHFHHQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAE 128
+ + ++Q + +QL+ FWS +E+E DFKNH LP+ RIKKIMK D DV MI++E
Sbjct: 2 ENNNGNNQLPPKGNEQLKSFWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASE 58
Query: 129 APVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 188
AP++ +KACEMFI++LT+RSW+H +E+KR TLQK+++ AA+++T +FDFL+D D+++
Sbjct: 59 APILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD----DDIE 114
Query: 189 EEGLGVTKGALPVVGSPGDMPLYYVPPQHPVGHTGMIMGKPVDQAALYSGQQPRPPVAFM 248
+ V A PV P D +PP GM++G PV QP+P
Sbjct: 115 VKRESVAAAADPVAMPPIDD--GELPP-------GMVIGTPV--CCSLGIHQPQP--QMQ 161
Query: 249 PWPQSQSQAQQQQQ 262
WP + + +++
Sbjct: 162 AWPGAWTSVSGEEE 175
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 21/162 (12%)
Query: 75 HQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFA 134
HQQ + +QL+ FWS M E + KNH P++RIK+IMK D DV MI+AEAP + +
Sbjct: 8 HQQPPKDNEQLKSFWSKGM---EGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLS 64
Query: 135 KACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGV 194
KACEMF+++LT+RSW+H +E+ R T++K+D+ A +S+T +FDFL D +P+D EG V
Sbjct: 65 KACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKD----EGEPV 120
Query: 195 TKGALPV------VGSPGDMPLYYVPPQHPVGHTGMIMGKPV 230
A PV V P D+ +PP G ++G PV
Sbjct: 121 VAAADPVDDVADHVAVP-DLNNEELPP-------GTVIGTPV 154
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 79/107 (73%), Gaps = 3/107 (2%)
Query: 83 QQLQMFWSNQMQEIEQTAD-FKNHSLPLARIKKIMKADEDVR--MISAEAPVIFAKACEM 139
Q L +W + +E K LPLARIKK+MK D+DV+ MISAEAP +FAK E+
Sbjct: 84 QALAEYWQKTIDTLEHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEI 143
Query: 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDE 186
FI ELT+R+W+H ++N+RRTLQ++DIA A+S+++++DFL+DII +D
Sbjct: 144 FIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKDN 190
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 9/108 (8%)
Query: 84 QLQMFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILE 143
Q++ +W QM D K+H+ PL RIKKIMK++ +V M++AEAPV+ +KACEM IL+
Sbjct: 44 QMRNYWIAQMG---NATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILD 100
Query: 144 LTLRSWIHTEENKRRTLQ------KNDIAAAISRTDVFDFLVDIIPRD 185
LT+RSW+HT E R+TL+ ++DI+AA +R+ F FL D++PRD
Sbjct: 101 LTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRD 148
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 4/100 (4%)
Query: 85 LQMFWSNQMQEIEQTADFKNHS-LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILE 143
L++FW+NQ EQ +F + LPL+R++KI+K+D +V+ IS + P +F+KACE FILE
Sbjct: 48 LKVFWNNQR---EQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILE 104
Query: 144 LTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 183
+TLR+W+HT+ R T+++ DI A+ + +DFL+D +P
Sbjct: 105 VTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
LPLAR+K ++KAD DV + EA I A+A E+F+ + ++ ++ KR+TLQ+ D+
Sbjct: 42 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 101
Query: 167 AAISRTDVFDFL 178
AI D F FL
Sbjct: 102 NAIEAVDEFAFL 113
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
LPLAR+K ++KAD DV + EA I A+A E+F+ + ++ ++ KR+TLQ+ D+
Sbjct: 41 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 100
Query: 167 AAISRTDVFDFL 178
AI D F FL
Sbjct: 101 NAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
LPLAR+K ++KAD DV + EA I A+A E+F+ + ++ ++ KR+TLQ+ D+
Sbjct: 40 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 99
Query: 167 AAISRTDVFDFL 178
AI D F FL
Sbjct: 100 NAIEAVDEFAFL 111
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
P+ARIKKIM+ DE+V I++ P++ ++ E+F+ +L +++ T+ K + + N +
Sbjct: 9 FPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLK 68
Query: 167 AAISRTDVFDFL---VDIIPRDELKEEG 191
I + FDFL VD IP D+ ++ G
Sbjct: 69 ECIKQESTFDFLTEIVDRIPDDKNEKRG 96
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 165
SLPL+RI+ IMK+ +V I+ EA V+ AKA E+F+ L S+ H +++ L +D+
Sbjct: 18 SLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDL 77
Query: 166 AAAISRTDVFDFLVDIIPRDELKEEGL 192
A +++ F FL DI+P+ L + L
Sbjct: 78 ANTAQQSETFQFLADILPKKILASKYL 104
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 97 EQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENK 156
E+ D + SLPL+RI+ IMK+ +V I+ EA V+ AKA E+F+ L S+ H
Sbjct: 9 EKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKA 68
Query: 157 RRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTK 196
++ L +D+A+ ++ FL DI+P+ L + L + K
Sbjct: 69 KKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLK 108
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKN 163
N P ARIKKIM+ DE++ ++A PVI ++A E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 164 DIAAAISRTDVFDFLVDII 182
+ I FDFL D++
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKN 163
N P ARIKKIM+ DE++ ++A PVI ++A E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 164 DIAAAISRTDVFDFLVDII 182
+ I FDFL D++
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKN 163
N P ARIKKIM+ DE++ ++A PVI ++A E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 164 DIAAAISRTDVFDFLVDII 182
+ I FDFL D++
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKN 163
N P ARIKKIM+ DE++ ++A PVI ++A E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 164 DIAAAISRTDVFDFLVDII 182
+ I FDFL D++
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 165
SLPL++IKKI K D D S A A E+FI T +S + + +KR+ LQ D
Sbjct: 91 SLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKDF 150
Query: 166 AAAISRTDVFDFLVDIIPR 184
+ A++ D +FL D +P+
Sbjct: 151 SNAVASQDSLNFLSDTVPK 169
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
LPL+R+K+I+K DEDV S + ++ + A E+F+ +L ++ + KR+ ++ D+
Sbjct: 10 LPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDVE 69
Query: 167 AAISRTDVFDFLVDI 181
+ + D F+FL D+
Sbjct: 70 DVVRKDDQFEFLSDL 84
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
P+ARIKKIM+AD+DV ++ PVI +KA E+F+ + S T ++ + + + +
Sbjct: 24 FPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHLK 83
Query: 167 AAISRTDVFDFLVDIIPR 184
A+ + FDFL DI+ +
Sbjct: 84 HAVQSVEQFDFLQDIVEK 101
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 107 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166
P+ARIKK+M++D+D+ ++ P AKA E+F++ L + + + + +
Sbjct: 12 FPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRVSPSHLK 71
Query: 167 AAISRTDVFDFLVDIIPR 184
A+ T+ FDFL DI+ +
Sbjct: 72 QAVLETEQFDFLQDIVSK 89
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 102 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQ 161
K H P A++KKIM+ DED+ +S PVI ++ E FI L +S + +
Sbjct: 49 IKTH-FPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRIT 107
Query: 162 KNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKG 197
+ I + FDFL EGL V +G
Sbjct: 108 AEILKKTILNDEKFDFL----------REGLCVEEG 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,569,038
Number of Sequences: 539616
Number of extensions: 4778374
Number of successful extensions: 103579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 39026
Number of HSP's gapped (non-prelim): 41516
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)