Query 024238
Match_columns 270
No_of_seqs 192 out of 817
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 5.8E-36 2E-40 244.4 12.0 114 71-184 5-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 6.4E-30 2.2E-34 201.6 9.4 94 91-184 2-97 (97)
3 1jfi_A Transcription regulator 99.9 5.3E-27 1.8E-31 185.6 6.6 87 102-188 7-93 (98)
4 2byk_A Chrac-16; nucleosome sl 99.9 7.2E-27 2.4E-31 196.2 6.9 93 100-192 13-106 (140)
5 2byk_B Chrac-14; nucleosome sl 99.8 1.3E-20 4.5E-25 155.8 6.6 79 103-181 6-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 7.4E-20 2.5E-24 142.5 7.0 81 103-186 5-86 (93)
7 1b67_A Protein (histone HMFA); 99.6 1.3E-15 4.5E-20 111.9 7.4 65 106-171 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.6 2.9E-15 9.9E-20 113.1 7.7 66 105-171 3-69 (76)
9 1jfi_B DR1 protein, transcript 99.5 5E-15 1.7E-19 129.0 7.1 80 101-181 10-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.5 4E-14 1.4E-18 117.7 7.8 77 104-180 23-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.5 5.9E-14 2E-18 115.5 7.2 77 104-180 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.5 7.9E-14 2.7E-18 115.7 7.2 77 104-180 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.5 6.9E-14 2.3E-18 114.7 6.4 77 104-180 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.4 1.1E-13 3.8E-18 114.6 6.9 77 104-180 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.4 1.7E-13 5.9E-18 116.4 7.1 77 104-180 42-118 (149)
16 2jss_A Chimera of histone H2B. 99.3 4.2E-12 1.4E-16 110.7 7.0 77 104-180 103-180 (192)
17 1ku5_A HPHA, archaeal histon; 99.3 8.9E-12 3E-16 92.2 7.3 66 105-171 5-70 (70)
18 1f1e_A Histone fold protein; a 99.2 1.3E-11 4.4E-16 105.2 8.2 70 102-172 78-147 (154)
19 3b0c_T CENP-T, centromere prot 99.2 4E-11 1.4E-15 96.8 6.4 77 103-180 4-80 (111)
20 1f1e_A Histone fold protein; a 99.1 1.5E-10 5E-15 98.7 7.8 67 105-172 3-70 (154)
21 1tzy_D Histone H4-VI; histone- 99.1 2.8E-10 9.6E-15 90.4 7.9 67 106-173 29-95 (103)
22 2yfw_B Histone H4, H4; cell cy 99.1 2.4E-10 8.2E-15 90.9 7.2 67 106-173 29-95 (103)
23 2hue_C Histone H4; mini beta s 99.0 7.6E-10 2.6E-14 85.0 7.9 69 104-173 8-76 (84)
24 1id3_B Histone H4; nucleosome 99.0 1.1E-09 3.8E-14 87.2 7.7 68 105-173 27-94 (102)
25 1taf_B TFIID TBP associated fa 98.7 6.4E-08 2.2E-12 72.9 7.7 66 104-170 4-69 (70)
26 2hue_B Histone H3; mini beta s 98.1 6.8E-06 2.3E-10 62.9 6.5 66 106-171 6-72 (77)
27 4dra_A Centromere protein S; D 97.9 1E-05 3.4E-10 66.1 5.2 68 112-180 33-104 (113)
28 1taf_A TFIID TBP associated fa 97.9 2.6E-05 9E-10 58.3 7.1 62 110-172 5-66 (68)
29 2ly8_A Budding yeast chaperone 97.9 1.7E-05 5.6E-10 65.4 6.5 54 120-173 60-113 (121)
30 1tzy_C Histone H3; histone-fol 97.9 3.2E-05 1.1E-09 64.8 8.1 77 93-170 49-130 (136)
31 3r45_A Histone H3-like centrom 97.9 2.4E-05 8.4E-10 66.9 6.6 78 93-170 64-147 (156)
32 3b0b_B CENP-S, centromere prot 97.8 2E-05 6.7E-10 63.6 5.2 69 112-180 25-96 (107)
33 2yfv_A Histone H3-like centrom 97.8 3.6E-05 1.2E-09 61.4 6.6 77 94-170 15-98 (100)
34 3nqu_A Histone H3-like centrom 97.8 3.6E-05 1.2E-09 64.8 6.8 77 93-170 48-131 (140)
35 3nqj_A Histone H3-like centrom 97.8 5.8E-05 2E-09 58.4 6.8 48 123-170 26-73 (82)
36 2l5a_A Histone H3-like centrom 97.7 1.9E-05 6.6E-10 71.4 4.5 93 79-172 98-226 (235)
37 3ksy_A SOS-1, SON of sevenless 97.7 6.1E-05 2.1E-09 78.9 8.7 76 104-180 102-177 (1049)
38 3v9r_A MHF1, uncharacterized p 97.6 0.00013 4.5E-09 57.2 6.6 52 124-175 32-83 (90)
39 4dra_E Centromere protein X; D 97.6 0.00031 1.1E-08 54.6 8.3 68 104-171 10-79 (84)
40 3vh5_A CENP-S; histone fold, c 97.5 0.00011 3.9E-09 61.9 5.6 59 124-182 39-98 (140)
41 3b0b_C CENP-X, centromere prot 97.5 0.00026 8.7E-09 54.6 6.9 68 104-171 6-75 (81)
42 1bh9_B TAFII28; histone fold, 97.3 0.00048 1.6E-08 53.7 6.0 72 100-172 10-82 (89)
43 2nqb_D Histone H2B; nucleosome 97.2 0.00061 2.1E-08 56.3 6.5 60 110-170 37-97 (123)
44 1tzy_B Histone H2B; histone-fo 97.2 0.00069 2.4E-08 56.2 6.6 59 111-170 41-100 (126)
45 2jss_A Chimera of histone H2B. 96.6 0.0027 9.2E-08 55.1 5.7 60 110-170 7-67 (192)
46 2l5a_A Histone H3-like centrom 96.0 0.013 4.3E-07 53.1 6.7 70 104-173 12-85 (235)
47 3v9r_B MHF2, uncharacterized p 95.6 0.034 1.2E-06 43.6 6.9 63 107-169 2-73 (88)
48 1h3o_B Transcription initiatio 95.1 0.051 1.7E-06 41.3 6.3 67 105-172 4-71 (76)
49 2ly8_A Budding yeast chaperone 81.5 2.5 8.6E-05 34.5 5.6 75 106-185 4-88 (121)
50 3kw6_A 26S protease regulatory 75.5 3.3 0.00011 29.5 4.1 43 130-172 27-73 (78)
51 2dzn_B 26S protease regulatory 71.3 5.1 0.00017 29.0 4.3 32 141-172 37-68 (82)
52 2krk_A 26S protease regulatory 68.6 5.7 0.00019 29.5 4.1 32 141-172 50-81 (86)
53 3aji_B S6C, proteasome (prosom 66.1 5.4 0.00019 28.7 3.5 32 141-172 40-71 (83)
54 3vlf_B 26S protease regulatory 66.0 6.5 0.00022 29.0 4.0 43 130-172 25-71 (88)
55 4b4t_K 26S protease regulatory 65.4 3.7 0.00013 39.2 3.2 42 130-171 368-413 (428)
56 1wwi_A Hypothetical protein TT 64.9 8.1 0.00028 32.7 4.8 59 106-165 2-60 (148)
57 2v1u_A Cell division control p 62.2 23 0.00078 30.5 7.4 64 109-172 203-276 (387)
58 3uk6_A RUVB-like 2; hexameric 57.9 25 0.00085 30.7 6.9 65 107-171 259-329 (368)
59 1g8p_A Magnesium-chelatase 38 57.9 27 0.00093 30.0 7.1 49 124-172 267-322 (350)
60 3k1j_A LON protease, ATP-depen 57.7 17 0.00058 35.3 6.3 50 124-173 314-376 (604)
61 1r4v_A Hypothetical protein AQ 52.2 7.2 0.00025 33.7 2.4 60 105-165 25-84 (171)
62 1h3o_A Transcription initiatio 50.5 21 0.00072 26.9 4.4 42 110-152 10-51 (75)
63 2qby_A CDC6 homolog 1, cell di 48.6 30 0.001 29.7 5.8 65 109-173 199-273 (386)
64 3h4m_A Proteasome-activating n 41.8 26 0.0009 29.4 4.3 43 130-172 212-258 (285)
65 3cuq_A Vacuolar-sorting protei 39.1 51 0.0017 29.4 5.9 34 69-103 8-41 (234)
66 1lv7_A FTSH; alpha/beta domain 38.7 32 0.0011 28.7 4.3 43 130-172 206-252 (257)
67 1fnn_A CDC6P, cell division co 38.2 72 0.0025 27.5 6.6 64 109-172 195-274 (389)
68 4b4t_J 26S protease regulatory 35.7 32 0.0011 32.8 4.3 42 130-171 343-388 (405)
69 2qby_B CDC6 homolog 3, cell di 35.3 93 0.0032 26.9 6.9 47 124-172 218-270 (384)
70 4b4t_I 26S protease regulatory 34.2 35 0.0012 33.0 4.3 42 130-171 377-422 (437)
71 2c9o_A RUVB-like 1; hexameric 33.4 76 0.0026 29.4 6.3 65 108-172 367-437 (456)
72 4b4t_L 26S protease subunit RP 32.9 38 0.0013 32.4 4.3 43 130-172 376-422 (437)
73 4b4t_M 26S protease regulatory 32.9 36 0.0012 32.5 4.2 43 130-172 376-422 (434)
74 1ixz_A ATP-dependent metallopr 32.6 41 0.0014 27.9 4.0 40 130-169 210-253 (254)
75 1u5t_A Appears to BE functiona 32.6 33 0.0011 30.6 3.6 102 63-175 22-144 (233)
76 4b4t_H 26S protease regulatory 31.7 36 0.0012 33.1 4.0 43 130-172 404-450 (467)
77 3bos_A Putative DNA replicatio 30.9 1.1E+02 0.0038 24.1 6.2 45 125-170 194-241 (242)
78 1iy2_A ATP-dependent metallopr 29.5 48 0.0016 28.1 4.0 41 130-170 234-278 (278)
79 1w5s_A Origin recognition comp 28.8 86 0.0029 27.4 5.6 65 107-172 215-293 (412)
80 1jr3_D DNA polymerase III, del 24.3 58 0.002 28.4 3.6 74 111-186 150-226 (343)
81 1bh9_A TAFII18; histone fold, 20.9 1.3E+02 0.0044 20.2 4.0 40 111-150 5-44 (45)
82 2qz4_A Paraplegin; AAA+, SPG7, 20.1 24 0.00083 29.0 0.3 33 140-172 217-249 (262)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=100.00 E-value=5.8e-36 Score=244.42 Aligned_cols=114 Identities=55% Similarity=0.998 Sum_probs=108.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHH
Q 024238 71 QHFHHQQQQQQQQQLQMFWSNQMQEIEQT-ADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSW 149 (270)
Q Consensus 71 ~~~~~~~~~~~~q~l~~FW~~~~~eiE~~-~dfk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~ 149 (270)
..+++.|+.+.++.|.+||.++++|||.. .|||++.||+||||||||.|+|+++||++|++++++|||+||.+|+.+|+
T Consensus 5 ~~~~~~l~~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~ 84 (119)
T 4g92_C 5 ANVNQGLQGTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAW 84 (119)
T ss_dssp HHHHTTCCTHHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999974 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHhcCCcccchhccCCC
Q 024238 150 IHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPR 184 (270)
Q Consensus 150 ~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~DIVP~ 184 (270)
.+|+.+|||||+++||+.||++++.||||.|+|||
T Consensus 85 ~~a~~~krktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 85 IHAEDNKRRTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HHHHHTTCSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred HHHHhcccCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 99999999999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=6.4e-30 Score=201.62 Aligned_cols=94 Identities=70% Similarity=1.103 Sum_probs=77.3
Q ss_pred HHHHHHHh--hhcCCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 024238 91 NQMQEIEQ--TADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAA 168 (270)
Q Consensus 91 ~~~~eiE~--~~dfk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~A 168 (270)
++++||++ ..|++.+.||+||||||||.|+++++||+||++++++|||+||.+|+.+||++|+.+|||||+++||..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 57888887 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccchhccCCC
Q 024238 169 ISRTDVFDFLVDIIPR 184 (270)
Q Consensus 169 I~~~e~FdFL~DIVP~ 184 (270)
|.+++.|+||.|+||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.93 E-value=5.3e-27 Score=185.61 Aligned_cols=87 Identities=25% Similarity=0.316 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhcc
Q 024238 102 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 181 (270)
Q Consensus 102 fk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~DI 181 (270)
-..+.||++|||||||.|+|+++||++|++++++|||+|+.+|+.+||++|+.+|||||+++||..||.+++.|+||.|+
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 024238 182 IPRDELK 188 (270)
Q Consensus 182 VP~~~~~ 188 (270)
+|++...
T Consensus 87 vp~k~~~ 93 (98)
T 1jfi_A 87 KEAELAA 93 (98)
T ss_dssp -------
T ss_pred CchHhhh
Confidence 9998743
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.93 E-value=7.2e-27 Score=196.16 Aligned_cols=93 Identities=20% Similarity=0.403 Sum_probs=70.3
Q ss_pred hcCCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcccHHHHHHHHhcCCcccch
Q 024238 100 ADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHT-EENKRRTLQKNDIAAAISRTDVFDFL 178 (270)
Q Consensus 100 ~dfk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A-~~~KRKTLq~~DIa~AI~~~e~FdFL 178 (270)
...+.+.||++|||||||.|+++++||++|+++|++|||+||++|+.+||.+| +.+|||||+|+||+.||.+.+.|+||
T Consensus 13 ~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 13 PPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp ----------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred CcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 34677899999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hccCCCcccccccC
Q 024238 179 VDIIPRDELKEEGL 192 (270)
Q Consensus 179 ~DIVP~~~~~~~~~ 192 (270)
.||||++....+-+
T Consensus 93 ~divP~ki~l~~~~ 106 (140)
T 2byk_A 93 LQIVPQKIRVHQFQ 106 (140)
T ss_dssp TTTSCSCC------
T ss_pred hccccchhhHHHHH
Confidence 99999987554443
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.81 E-value=1.3e-20 Score=155.75 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCCCCChHHHHHHHh-CChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhcc
Q 024238 103 KNHSLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 181 (270)
Q Consensus 103 k~~~LPLARIKKIMK-sDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~DI 181 (270)
.++.||+|||+|||| .+|++.+||+||.++|++|||+||.+|+.+|+.+|...|||||+++||..||.+.+.++||..+
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 457899999999999 6899999999999999999999999999999999999999999999999999999999999855
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.79 E-value=7.4e-20 Score=142.47 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCCCCChHHHHHHHhCC-hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhcc
Q 024238 103 KNHSLPLARIKKIMKAD-EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 181 (270)
Q Consensus 103 k~~~LPLARIKKIMKsD-pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~DI 181 (270)
.++.||+++|+||||.+ +++.+||+||..+|++|||+||.+|+.+|+.+|..+|||||+++||..|++ .++|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 45789999999999999 999999999999999999999999999999999999999999999999998 67888888
Q ss_pred CCCcc
Q 024238 182 IPRDE 186 (270)
Q Consensus 182 VP~~~ 186 (270)
.|.+.
T Consensus 82 ~~~~~ 86 (93)
T 1n1j_A 82 EPLKL 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.61 E-value=1.3e-15 Score=111.86 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=62.4
Q ss_pred CCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 106 ~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
.||+++|+||||.+ +..+||+||..+|++|+|.||.+|+.+|+.+|...|||||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 59999999999999 678999999999999999999999999999999999999999999999875
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.58 E-value=2.9e-15 Score=113.07 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHh-CChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 105 HSLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 105 ~~LPLARIKKIMK-sDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
..||+|+|+|||| ..|++ +||+||..++.+|||+||.+|+.+|.+.|+.+|||||+++||..|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4799999999999 66875 799999999999999999999999999999999999999999999875
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.55 E-value=5e-15 Score=128.98 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=72.5
Q ss_pred cCCCCCCChHHHHHHHhCC-hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchh
Q 024238 101 DFKNHSLPLARIKKIMKAD-EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 179 (270)
Q Consensus 101 dfk~~~LPLARIKKIMKsD-pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~ 179 (270)
...++.||+++|+||||.. | ..+||+||..+|.+||++||.+|+.+|+++|...+||||+++||..|+.+.+..+|+.
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH
Confidence 3456789999999999987 6 5789999999999999999999999999999999999999999999999998888877
Q ss_pred cc
Q 024238 180 DI 181 (270)
Q Consensus 180 DI 181 (270)
.+
T Consensus 89 ~l 90 (179)
T 1jfi_B 89 EV 90 (179)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.49 E-value=4e-14 Score=117.68 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+||||.+....+|+++|++.|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|+||..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 57999999999999998889999999999999999999999999999999999999999999999999999999884
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.47 E-value=5.9e-14 Score=115.52 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+||||.+....+|+++|++.|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 47899999999999998889999999999999999999999999999999999999999999999999999999884
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.46 E-value=7.9e-14 Score=115.65 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+||||.+....+|+++|++.|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 47999999999999998889999999999999999999999999999999999999999999999999999999884
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.45 E-value=6.9e-14 Score=114.69 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+|+||.+....+|+++|++.|+.++|+|+.++.+.|.+.|+.+||++|+++||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 47899999999999998888999999999999999999999999999999999999999999999999999999984
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.44 E-value=1.1e-13 Score=114.63 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCCCChHHHHHHHhCChhh-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDV-RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV-~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+|+||.+.+. .+|+++|++.|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|++|.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 4799999999999998765 4999999999999999999999999999999999999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.43 E-value=1.7e-13 Score=116.36 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+||||.+....+|+++|++.|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 47999999999999998889999999999999999999999999999999999999999999999999999999884
No 16
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.28 E-value=4.2e-12 Score=110.67 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCCCChHHHHHHHhCChhh-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDV-RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV-~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||+|+||.+.+. .+|+++|++.|+.++|+|+.++.+.|.+.|+.+||++|+++||..||.++++|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 5799999999999998765 5999999999999999999999999999999999999999999999999999999986
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.27 E-value=8.9e-12 Score=92.23 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 105 HSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 105 ~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
..||.+.|+||+|.. ++.+||.++...+.+++|.|+.+|+.+|..+|++.|||||+.+||..|+++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 479999999999987 678999999999999999999999999999999999999999999999863
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.25 E-value=1.3e-11 Score=105.22 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 102 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 102 fk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
--.+.||++.|.||||.. ++.+||++|...+..++|.|+.++++.|...|++.|||||+.+||..|+++.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 356789999999999999 7789999999999999999999999999999999999999999999999864
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.15 E-value=4e-11 Score=96.85 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 103 KNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 103 k~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
++..||.+-|+||||.. .+.+||.++...+..+++.|+..++.+|...|++.|||||+.+||..|+++...+.|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 45689999999999998 678999999999999999999999999999999999999999999999999977666544
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.10 E-value=1.5e-10 Score=98.74 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHhCC-hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 105 HSLPLARIKKIMKAD-EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 105 ~~LPLARIKKIMKsD-pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
..||.+.|+||||.. ++ .+||+||...|++++|.|+.+++++|.+.|++.|||||+.+||..|+...
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 479999999999999 77 79999999999999999999999999999999999999999999999654
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.08 E-value=2.8e-10 Score=90.37 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=63.9
Q ss_pred CCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 106 ~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
.||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|...|+..|||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 49999999999988 56899999999999999999999999999999999999999999999999774
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.07 E-value=2.4e-10 Score=90.85 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 106 ~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
.||.++|+||++.. .+.+||.+|...++.++|.|+++++.+|...|+..|||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 49999999999988 56899999999999999999999999999999999999999999999998764
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.02 E-value=7.6e-10 Score=84.99 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
...||.+.|+||++.. .+.+||.++...+..++|.|+++++.+|...|++.|||||+.+||..|+++..
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g 76 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 76 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 4569999999999988 77899999999999999999999999999999999999999999999998763
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.98 E-value=1.1e-09 Score=87.25 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 105 HSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 105 ~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
..||.+.|+||++.. .+.+||.++...+..++|.|+++++.+|...|+..+||||+.+||..|+++..
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 359999999999998 67899999999999999999999999999999999999999999999998763
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.67 E-value=6.4e-08 Score=72.87 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
...||++-||+|.++- ++.++|.|+...|+.-+|+-+.+++.+|.++++..|||||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4589999999999998 67889999999999999999999999999999999999999999999975
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.08 E-value=6.8e-06 Score=62.89 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCChHH-HHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 106 SLPLAR-IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 106 ~LPLAR-IKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
.+|..| ||+|...-..--+++++|..+|..|+|.|+..|.+.+..+|...||+||+.+||.-|..-
T Consensus 6 k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 6 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 345555 344433222225899999999999999999999999999999999999999999988753
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.93 E-value=1e-05 Score=66.09 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHHHHhCC---hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc-cchhc
Q 024238 112 IKKIMKAD---EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF-DFLVD 180 (270)
Q Consensus 112 IKKIMKsD---pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~F-dFL~D 180 (270)
|-||++.. -++ .||.++...|+..++.|+..|+.++...|+..|||||+.+||.-++++++.+ ++|.+
T Consensus 33 V~rIvke~gaer~~-~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 33 VGCLCEEVALDKEM-QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 45566643 122 4999999999999999999999999999999999999999999999999754 34443
No 28
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.92 E-value=2.6e-05 Score=58.26 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 110 ARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 110 ARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
-.|.+|+|+- ++..++.+++..|...++.++.+++++|...|+..+||||+.+||.-||+..
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3588999986 7789999999999999999999999999999999999999999999999753
No 29
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.7e-05 Score=65.41 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=51.6
Q ss_pred hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 120 EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 120 pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
-++++||.++...+..++|.|++.++.+|...|+..|||||+.+||..|+++..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 478999999999999999999999999999999999999999999999998765
No 30
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.91 E-value=3.2e-05 Score=64.82 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHhCC-----hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 024238 93 MQEIEQTADFKNHSLPLARIKKIMKAD-----EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAA 167 (270)
Q Consensus 93 ~~eiE~~~dfk~~~LPLARIKKIMKsD-----pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~ 167 (270)
+.||..-...-++.||...+.||++.- .| -+++.+|..+|..|+|.|+..|.+++..+|...||.||..+||.-
T Consensus 49 lrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~-~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqL 127 (136)
T 1tzy_C 49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127 (136)
T ss_dssp HHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHhhcchhhhhccchHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHH
Confidence 345654333334444444444443322 34 489999999999999999999999999999999999999999998
Q ss_pred HHh
Q 024238 168 AIS 170 (270)
Q Consensus 168 AI~ 170 (270)
|..
T Consensus 128 a~r 130 (136)
T 1tzy_C 128 ARR 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.85 E-value=2.4e-05 Score=66.94 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=53.6
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHhCC----h--hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 024238 93 MQEIEQTADFKNHSLPLARIKKIMKAD----E--DVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166 (270)
Q Consensus 93 ~~eiE~~~dfk~~~LPLARIKKIMKsD----p--DV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa 166 (270)
+.||..-....++.||...+.||++.- . ..-+++.+|..+|..|+|.|+..|.+.|+.+|...||+||..+||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 667765444444555555555554431 1 1238999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 024238 167 AAIS 170 (270)
Q Consensus 167 ~AI~ 170 (270)
-|..
T Consensus 144 LArr 147 (156)
T 3r45_A 144 LARR 147 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.82 E-value=2e-05 Score=63.64 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHhCChh--hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc-cchhc
Q 024238 112 IKKIMKADED--VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF-DFLVD 180 (270)
Q Consensus 112 IKKIMKsDpD--V~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~F-dFL~D 180 (270)
|.||++..-. -.++|.++...|+..++.|+..|+.++...|+..|||||+.+||.-++++++.+ +.|.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~ 96 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHH
Confidence 4555554311 137999999999999999999999999999999999999999999999999743 34433
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.81 E-value=3.6e-05 Score=61.42 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHHHhh---hcCCCCCCChHH-HHHHHhCC-h--hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 024238 94 QEIEQT---ADFKNHSLPLAR-IKKIMKAD-E--DVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 166 (270)
Q Consensus 94 ~eiE~~---~dfk~~~LPLAR-IKKIMKsD-p--DV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa 166 (270)
.||..- +++--..+|..| ||.|...- . +.-+++.+|..+|..|+|.|+-.|.+.|..+|...||.||..+||.
T Consensus 15 rEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 94 (100)
T 2yfv_A 15 AEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94 (100)
T ss_dssp -------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 456443 444444455555 33444321 1 1358999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 024238 167 AAIS 170 (270)
Q Consensus 167 ~AI~ 170 (270)
-|..
T Consensus 95 La~r 98 (100)
T 2yfv_A 95 LARR 98 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 34
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.81 E-value=3.6e-05 Score=64.82 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=54.7
Q ss_pred HHHHHh---hhcCCCCCCChHHH-HHHHhC---ChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024238 93 MQEIEQ---TADFKNHSLPLARI-KKIMKA---DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 165 (270)
Q Consensus 93 ~~eiE~---~~dfk~~~LPLARI-KKIMKs---DpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DI 165 (270)
+.||.. .+++--..+|..|+ |.|... +.+ -+++.+|..+|..|+|.|+..|.+.|+.+|...||.||..+||
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~-~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDi 126 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 126 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccccc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 566753 45555455666664 334321 112 3899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 024238 166 AAAIS 170 (270)
Q Consensus 166 a~AI~ 170 (270)
.-|..
T Consensus 127 qLArr 131 (140)
T 3nqu_A 127 QLARR 131 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 35
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.77 E-value=5.8e-05 Score=58.36 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=45.4
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 123 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 123 ~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
-+++++|..++..|+|.|+-.|.+.|..+|...||+||..+||.-|..
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 389999999999999999999999999999999999999999988764
No 36
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=1.9e-05 Score=71.38 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC------------------CCC--CChH----HH------------HHHHhCChhh
Q 024238 79 QQQQQQLQMFWSNQMQEIEQTADFK------------------NHS--LPLA----RI------------KKIMKADEDV 122 (270)
Q Consensus 79 ~~~~q~l~~FW~~~~~eiE~~~dfk------------------~~~--LPLA----RI------------KKIMKsDpDV 122 (270)
....+.|++-|.+.+++-++..|.. .+. =... |- +||.+.. +|
T Consensus 98 ~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~RlaRrg-GV 176 (235)
T 2l5a_A 98 KLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDKG-GV 176 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCCTTSCCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHHHHhhcC-Cc
Confidence 4677899999999998887643211 010 1111 22 2444444 78
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 123 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 123 ~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
++||.++...+..++|.|++.++.+|...|+..+||||+..||..|+++.
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999865
No 37
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.74 E-value=6.1e-05 Score=78.94 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcccchhc
Q 024238 104 NHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 180 (270)
Q Consensus 104 ~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~FdFL~D 180 (270)
.+.||++||.|.+ .+--..+|++.|++.++..+|++..++.+-|.+.|+..++++|++.||.-||.+++.++-|.+
T Consensus 102 ~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~ 177 (1049)
T 3ksy_A 102 PLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFH 177 (1049)
T ss_dssp SCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC
T ss_pred CccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHHh
Confidence 5789999999999 444556999999999999999999999999999999999999999999999999988765543
No 38
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00013 Score=57.15 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=49.7
Q ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc
Q 024238 124 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF 175 (270)
Q Consensus 124 ~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~F 175 (270)
.||.++...|+..++.++..|+..+...|+..|||||+.+||.-++++++.+
T Consensus 32 ~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 32 KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 5999999999999999999999999999999999999999999999999754
No 39
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.57 E-value=0.00031 Score=54.57 Aligned_cols=68 Identities=9% Similarity=0.275 Sum_probs=60.8
Q ss_pred CCCCChHHHHHHHhCC--hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 104 NHSLPLARIKKIMKAD--EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 104 ~~~LPLARIKKIMKsD--pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
...||..-|.||++.. .+-.+||.||..++++-+++|+.+-+.||...|+..+...|..+||.+++-.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4679999999999975 4667999999999999999999999999999999888899999999987643
No 40
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.51 E-value=0.00011 Score=61.86 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=52.9
Q ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc-cchhccC
Q 024238 124 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF-DFLVDII 182 (270)
Q Consensus 124 ~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e~F-dFL~DIV 182 (270)
.||.++...|+.+++.|+..|+..+...|++.||+||+.+||.-++.+++.+ .+|.+.+
T Consensus 39 ~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~ 98 (140)
T 3vh5_A 39 LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKS 98 (140)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999754 4454443
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.49 E-value=0.00026 Score=54.57 Aligned_cols=68 Identities=7% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCCCChHHHHHHHhCC--hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 104 NHSLPLARIKKIMKAD--EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 104 ~~~LPLARIKKIMKsD--pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
+..||..-|.||++.. .+-.+|+++|..++++-+++||.+-..||...|+..+...|..+||.+..-.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 5689999999999964 4567999999999999999999999999999999899999999999996643
No 42
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.25 E-value=0.00048 Score=53.73 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=62.0
Q ss_pred hcCCCCCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHhcC
Q 024238 100 ADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENK-RRTLQKNDIAAAISRT 172 (270)
Q Consensus 100 ~dfk~~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~K-RKTLq~~DIa~AI~~~ 172 (270)
..|+...|+-+.|||||..--+. .++.+..++++..+.+||.+|+..|.++.++.+ +.-|+++||..|..+.
T Consensus 10 e~~Rrs~f~k~~vKrl~~~~~~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 10 EMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 46777899999999999865443 688999999999999999999999999987664 5699999999998754
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.22 E-value=0.00061 Score=56.34 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=54.1
Q ss_pred HHHHHHHh-CChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 110 ARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 110 ARIKKIMK-sDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
.-|.||+| ..||. .||.+|.-++.--++.+.+.|+.+|...+..+||+||+.+||..||.
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 45888888 46886 48999999999999999999999999999999999999999999985
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.19 E-value=0.00069 Score=56.23 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=53.9
Q ss_pred HHHHHHh-CChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 111 RIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 111 RIKKIMK-sDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
-|.||+| ..||.+ ||.+|.-++.--++.+.+.|+.+|...+..+||+||+.+||..||.
T Consensus 41 YIyKVLKQVhpd~g-ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDTG-ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 5888888 468864 9999999999999999999999999999999999999999999985
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.59 E-value=0.0027 Score=55.12 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred HHHHHHHhC-ChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 110 ARIKKIMKA-DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 110 ARIKKIMKs-DpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
..|+|++|. .||.+ ||.+|..++..-+..+++.|+.+|...+..+||+||+..||..||.
T Consensus 7 ~yi~kvLkqv~p~~~-iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTG-ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 458999985 57764 9999999999999999999999999999999999999999999986
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.013 Score=53.08 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=58.1
Q ss_pred CCCCChHH-HHHHHhCCh---hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 104 NHSLPLAR-IKKIMKADE---DVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 104 ~~~LPLAR-IKKIMKsDp---DV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
-..||..| |+.|...-. +.-++.++|..+|..|+|.|+-.|-..+..+|...||-||..+||.-|-.-..
T Consensus 12 I~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 12 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp CSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 35788888 456666422 13479999999999999999999999999999999999999999998875443
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.034 Score=43.59 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=48.5
Q ss_pred CChHHHHHHHhCC--hhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcccHHHHHHHH
Q 024238 107 LPLARIKKIMKAD--EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENK-------RRTLQKNDIAAAI 169 (270)
Q Consensus 107 LPLARIKKIMKsD--pDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~K-------RKTLq~~DIa~AI 169 (270)
+|..-|-||++.. .+-.+||+||..+++|-+++||.+-..||....+..+ ...|.-.||.+..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 6778888998864 5667999999999999999999999999986665422 2577777877654
No 48
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.09 E-value=0.051 Score=41.32 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHhC-ChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 105 HSLPLARIKKIMKA-DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 105 ~~LPLARIKKIMKs-DpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
..|.-.++..++|. ||. ..+..++-.+|.+.++.||..++..|...|+..|..||..+||.-.++++
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34667777777764 665 46888999999999999999999999999999999999999999888765
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=81.54 E-value=2.5 Score=34.53 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=51.5
Q ss_pred CCChHHH-HHHHhC---ChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccc---HHHHHHHHhcCCcc
Q 024238 106 SLPLARI-KKIMKA---DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEEN---KRRTLQ---KNDIAAAISRTDVF 175 (270)
Q Consensus 106 ~LPLARI-KKIMKs---DpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~---KRKTLq---~~DIa~AI~~~e~F 175 (270)
++|-.|+ |.|.+. +.+.-+..++|..+|-.|+|.|+-.|-..++.+|... +-|.|+ |+.+..+++
T Consensus 4 klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~----- 78 (121)
T 2ly8_A 4 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLK----- 78 (121)
T ss_dssp CCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHH-----
T ss_pred ccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHH-----
Confidence 6788885 446542 1112479999999999999999999999998887654 446666 334433333
Q ss_pred cchhccCCCc
Q 024238 176 DFLVDIIPRD 185 (270)
Q Consensus 176 dFL~DIVP~~ 185 (270)
+||.+|+-+.
T Consensus 79 ~~l~~i~rda 88 (121)
T 2ly8_A 79 SFLESVIRDS 88 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5777766543
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=75.46 E-value=3.3 Score=29.54 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
...|++.||-| |..|+.+|...|-..+++.|+.+|+..|+.+.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44555666655 67888888888888899999999999999753
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=71.33 E-value=5.1 Score=29.03 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 141 ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 141 I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
|..|+.+|...|-..+++.|+.+|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 35677778778888889999999999999875
No 52
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=68.61 E-value=5.7 Score=29.51 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 141 ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 141 I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
|..|+.+|...|....++.|+.+|+..|+.+.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45677788888888888999999999998753
No 53
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=66.11 E-value=5.4 Score=28.67 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 141 ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 141 I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
|..|+.+|...|-..++..|+.+|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45677788888888888999999999999764
No 54
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=65.95 E-value=6.5 Score=29.05 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
...|++.|+-| |..|+.+|...|...++..|+.+|+..|+.+.
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 34455555555 67788888888888889999999999999764
No 55
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.41 E-value=3.7 Score=39.21 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
...|++.|+-| |..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 45566666644 7889999999998999999999999999864
No 56
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=64.90 E-value=8.1 Score=32.69 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=45.3
Q ss_pred CCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024238 106 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 165 (270)
Q Consensus 106 ~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DI 165 (270)
.++.++++|+++..-++... ++-.--+...++-=+-+|..-|...|+.++|..|...||
T Consensus 2 vm~~~~~e~lFR~aa~Ldvd-K~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVD-KNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36789999999976655433 444555556666667889999999999999999998874
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=62.19 E-value=23 Score=30.53 Aligned_cols=64 Identities=9% Similarity=0.169 Sum_probs=48.9
Q ss_pred hHHHHHHHhCCh----hhhccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 109 LARIKKIMKADE----DVRMISAEAPVIFAKACE------MFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 109 LARIKKIMKsDp----DV~~ISaEApvllAKAtE------lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
..-++.|++.-- .-..++.++...+++.+. ..+..++..|+..|...++.+|+.+||..++...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 455666665321 113578899888888887 5677888999999988889999999999998765
No 58
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=57.91 E-value=25 Score=30.67 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=47.2
Q ss_pred CChHHHHHHHhCC--hhhhccCccHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 107 LPLARIKKIMKAD--EDVRMISAEAPVIFAKACE----MFILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 107 LPLARIKKIMKsD--pDV~~ISaEApvllAKAtE----lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
+...-+++|++.- ..-..++.++...+++.+. -.+..|+.+|...|..++++.|+.+||..++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3445566666621 1112478888888888776 355677888888888889999999999999975
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=57.89 E-value=27 Score=30.03 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=35.9
Q ss_pred ccCccHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 124 MISAEAPVIFAKACEM-------FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 124 ~ISaEApvllAKAtEl-------FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
.++.++..+|.+.+.- -+..|...|...|...+|.+|+.+||..++...
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 5777777776655432 345667777778888899999999999988653
No 60
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=57.67 E-value=17 Score=35.31 Aligned_cols=50 Identities=8% Similarity=0.046 Sum_probs=38.3
Q ss_pred ccCccHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 124 MISAEAPVIFAKAC-------------EMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 124 ~ISaEApvllAKAt-------------ElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
.++.+|...|.+.. ..-+..|...|...|+..++..|+.+||..|+....
T Consensus 314 ~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~ 376 (604)
T 3k1j_A 314 HFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAK 376 (604)
T ss_dssp CBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhh
Confidence 56777776666533 344567888888889899999999999999997643
No 61
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=52.18 E-value=7.2 Score=33.75 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024238 105 HSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 165 (270)
Q Consensus 105 ~~LPLARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DI 165 (270)
..++.++++||++..-++. |-++-.--+...++-=+-+|..-|...|+.++|..|...||
T Consensus 25 ~vmg~~kferlFR~aagLD-vdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 25 RPKGFDKLDHYFRTELDID-LTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp SCTTHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred hcCChHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4789999999999875554 34555555666666667888899999999999999998874
No 62
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=50.49 E-value=21 Score=26.91 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024238 110 ARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHT 152 (270)
Q Consensus 110 ARIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A 152 (270)
.||..||+.- +++-++.|+..+++-|||.=+..|.+.-...|
T Consensus 10 kri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a 51 (75)
T 1h3o_A 10 RRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETA 51 (75)
T ss_dssp HHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5788899875 88889999999999999988777776654444
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.57 E-value=30 Score=29.70 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred hHHHHHHHhCChh----hhccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024238 109 LARIKKIMKADED----VRMISAEAPVIFAKACE------MFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173 (270)
Q Consensus 109 LARIKKIMKsDpD----V~~ISaEApvllAKAtE------lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~e 173 (270)
..-++.|++.--+ ...++.++...+.+.+. ..+..++..++..+...++.+|+.+||..++.+..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 3456666653211 12467777777777766 34556888899888888889999999998887653
No 64
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.78 E-value=26 Score=29.42 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEM----FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtEl----FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
...+++.++- -|..|+.+|...|...++++|+.+||..|+.+.
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 3444444432 466788889888988999999999999999754
No 65
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=39.09 E-value=51 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 024238 69 QAQHFHHQQQQQQQQQLQMFWSNQMQEIEQTADFK 103 (270)
Q Consensus 69 ~~~~~~~~~~~~~~q~l~~FW~~~~~eiE~~~dfk 103 (270)
+..++..|+ ...+..|.+|=++-..||.+...|+
T Consensus 8 ~~~~~~~Ql-~~F~~~L~~FA~kH~~eI~~dp~fR 41 (234)
T 3cuq_A 8 QLAQMSKQL-DMFKTNLEEFASKHKQEIRKNPEFR 41 (234)
T ss_dssp --CTTHHHH-HHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcccccccCHHHH
Confidence 344455544 3678899999999989998776654
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.67 E-value=32 Score=28.67 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=31.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEM----FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtEl----FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
..++++.++- -|..++.+|...|...+++.|+.+|+..|+...
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 3455554443 355677888888888889999999999998753
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=38.21 E-value=72 Score=27.54 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=45.7
Q ss_pred hHHHHHHHhCChh----hhccCccHHHHHHHHH---------H---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 109 LARIKKIMKADED----VRMISAEAPVIFAKAC---------E---MFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 109 LARIKKIMKsDpD----V~~ISaEApvllAKAt---------E---lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
..-++.|++.--. -..++.++...+.+.+ . .++..++..|+..|...++.+|+.+||..++...
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 3555556543211 1257778887777777 2 4567888889999988888999999999988764
No 68
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.70 E-value=32 Score=32.75 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=33.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 130 PVIFAKACEM----FILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 130 pvllAKAtEl----FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
...|++.|+- =|..|+.+|...|.+++|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4456666553 36788999999998899999999999999875
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.27 E-value=93 Score=26.93 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred ccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 124 MISAEAPVIFAKACE------MFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 124 ~ISaEApvllAKAtE------lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
.++.++...+++.+. ..+..++..|+..|. ++++|+.+||..++.+.
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 577788777777776 235567778887776 67889999999988765
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.18 E-value=35 Score=33.01 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAISR 171 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~ 171 (270)
...|++.|+-| |..|+.+|...|...+|..|+.+|+..|+.+
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44566665533 6788899999998999999999999999875
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=33.42 E-value=76 Score=29.42 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=46.1
Q ss_pred ChHHHHHHHhCC--hhhhccCccHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 108 PLARIKKIMKAD--EDVRMISAEAPVIFAKAC-E---MFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 108 PLARIKKIMKsD--pDV~~ISaEApvllAKAt-E---lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
....+++|++.- .+-..++.++..++++.+ + .....|...|...|..+++.+|+.+||..++.-.
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 445667777532 111247888877777766 3 3456777888888888999999999999998654
No 72
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.92 E-value=38 Score=32.39 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEM----FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtEl----FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
...|++.|+- =|..|+.+|...|...+|..|+.+||..|+.+.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3445555543 267888899989988999999999999998753
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.89 E-value=36 Score=32.47 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEM----FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtEl----FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
.-.|++.|+- =|..|+.+|...|.+++++.|+.+|+..|+++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3445555553 367888889888888899999999999999764
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=32.65 E-value=41 Score=27.94 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAI 169 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI 169 (270)
...+++.++-| |..++.+|...|...++++|+.+|+..|+
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 55666665543 45677788888888888899999999886
No 75
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=32.62 E-value=33 Score=30.57 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCChHHHHHHH---hCChhhhccCccHHHHHHHHHHH
Q 024238 63 HQLAYQQAQHFHHQQQQQQQQQLQMFWSNQMQEIEQTADFKNHSLPLARIKKIM---KADEDVRMISAEAPVIFAKACEM 139 (270)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~q~l~~FW~~~~~eiE~~~dfk~~~LPLARIKKIM---KsDpDV~~ISaEApvllAKAtEl 139 (270)
.++...+..++..|+. ..+..|.+|=++-..||.+...|+. +.++++ -.||=. +|.-..-++. .-.
T Consensus 22 ~~l~~~~~~~l~~Ql~-~F~~~L~~FA~kHk~eI~~dp~fR~------~F~~mc~siGVDPLa--~s~kg~~~lg--~gd 90 (233)
T 1u5t_A 22 KTILEKQSVELRDQLM-VFQERLVEFAKKHNSELQASPEFRS------KFMHMCSSIGIDPLS--LFDRDKHLFT--VND 90 (233)
T ss_dssp SHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTTTTTTCHHHHH------HHHHHHHHHTCCHHH--HTTSSGGGTT--HHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcccCHHHHH------HHHHHHHHcCCCCCc--cCCccccccC--cch
Confidence 4455555555555443 5566677776665556654444431 222222 223211 0110011112 356
Q ss_pred HHHHHHHHHHHHHHhcC------------------CCcccHHHHHHHHhcCCcc
Q 024238 140 FILELTLRSWIHTEENK------------------RRTLQKNDIAAAISRTDVF 175 (270)
Q Consensus 140 FI~eLT~~A~~~A~~~K------------------RKTLq~~DIa~AI~~~e~F 175 (270)
|--+|+.+-.++|...+ +-.|+.+||.+||++...|
T Consensus 91 fy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~L 144 (233)
T 1u5t_A 91 FYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL 144 (233)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc
Confidence 77777777777665422 2389999999999988765
No 76
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.66 E-value=36 Score=33.14 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
...|++.|+-| |..|+.+|...|.+.+|+.|+.+|+..|+.+.
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 44566666643 67889999999988999999999999998753
No 77
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=30.90 E-value=1.1e+02 Score=24.08 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=27.2
Q ss_pred cCccHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 125 ISAEAPVIFAKACE---MFILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 125 ISaEApvllAKAtE---lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
++.++...+.+.++ --+..+..++...+...+ ++|+.+||..++.
T Consensus 194 ~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 194 LPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 56666666666554 122344444555554444 5699999999875
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=29.48 E-value=48 Score=28.13 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024238 130 PVIFAKACEMF----ILELTLRSWIHTEENKRRTLQKNDIAAAIS 170 (270)
Q Consensus 130 pvllAKAtElF----I~eLT~~A~~~A~~~KRKTLq~~DIa~AI~ 170 (270)
...++..++=| |..|+.+|...|...+++.|+.+||..|++
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 45566555533 446777788788778888999999998863
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=28.78 E-value=86 Score=27.36 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=46.2
Q ss_pred CChHHHHHHHhCC-----hhhhccCccHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 107 LPLARIKKIMKAD-----EDVRMISAEAPVIFAKACE---------MFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 107 LPLARIKKIMKsD-----pDV~~ISaEApvllAKAtE---------lFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
|...-++.|++.- .+ ..++.++...+.+.+. .++..|+..++..+...++.+|+.+|+..++...
T Consensus 215 l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3445566666421 11 2366777777777777 4778888888888888888899999999888765
No 80
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.30 E-value=58 Score=28.43 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=40.9
Q ss_pred HHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc---CCcccchhccCCCcc
Q 024238 111 RIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR---TDVFDFLVDIIPRDE 186 (270)
Q Consensus 111 RIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~---~e~FdFL~DIVP~~~ 186 (270)
+|+++++.. ++ .|+.+|..+|+..++-=+..+..+--..+...+.++|+.+||...+.. ...|+|+..++-++.
T Consensus 150 ~l~~~~~~~-g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~ 226 (343)
T 1jr3_D 150 WVAARAKQL-NL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226 (343)
T ss_dssp HHHHHHHHT-TC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCH
T ss_pred HHHHHHHHc-CC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCH
Confidence 344544432 22 578888888877654211111111111111223458999999988754 346788887776653
No 81
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=20.86 E-value=1.3e+02 Score=20.20 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHhCChhhhccCccHHHHHHHHHHHHHHHHHHHHHH
Q 024238 111 RIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWI 150 (270)
Q Consensus 111 RIKKIMKsDpDV~~ISaEApvllAKAtElFI~eLT~~A~~ 150 (270)
-|+.+|=.-.|+..-..|+..++-..+-.||.+|+.+|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777666777788899999999999999999998864
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=20.11 E-value=24 Score=28.99 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024238 140 FILELTLRSWIHTEENKRRTLQKNDIAAAISRT 172 (270)
Q Consensus 140 FI~eLT~~A~~~A~~~KRKTLq~~DIa~AI~~~ 172 (270)
-|..|+.+|...|...+++.|+.+||..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 355677777777777778889999998888754
Done!