BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024239
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 303 bits (776), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 181/271 (66%), Gaps = 1/271 (0%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
M+ P KIHE+MRYSLLAGGKR+RP+LCIA+CELVGGDES MP ACA+EM HTMSL+HDD
Sbjct: 25 MKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGGDESTAMPAACAVEMIHTMSLMHDD 84
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXX 120
LP +DNDDLRRGKPTNH FGE FEHVAA T G +R+VR +
Sbjct: 85 LPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAAATKGAPPERIVRVLGELA 144
Query: 121 XXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXE 179
QV D+ SEG +V L LE+IH HKTA LL+ S
Sbjct: 145 VSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQGSVVLGAILGGGKEEEVA 204
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++R +A CIGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+G+E +K+FA+ L
Sbjct: 205 KLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVEKSKEFADRL 264
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A ++L +F +AAPL LA YI R N
Sbjct: 265 NREAQEQLLHFHPHRAAPLIALANYIAYRDN 295
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 173/274 (63%), Gaps = 18/274 (6%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHEA RYSLLAGGKR+RPVLCIA+CELVGG+ESL P ACA+E HT SLIHDD
Sbjct: 34 LREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAXPAACAVEXIHTXSLIHDD 93
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXX 119
LP DNDDLRRGKPTNHKV+GE FEH+A+ T VS RVVRA+
Sbjct: 94 LPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGEL 153
Query: 120 XXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXX 176
QV D+ SEG D V L L++IH+HKTA LLEAS
Sbjct: 154 AKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDE 213
Query: 177 XXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236
ER+R +ARCIGLLFQVVDDILDVTKSS K TYPKL G+E +++FA
Sbjct: 214 EIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLXGLEKSREFA 259
Query: 237 EELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
E+L ++A +L F+ K APL LA YI +RQN
Sbjct: 260 EKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/271 (47%), Positives = 159/271 (58%), Gaps = 37/271 (13%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP ACA+EM HTMSLIHDD
Sbjct: 34 LREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDD 93
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVG-VSTDRVVRAITXX 119
V+GE FEH+A+ T VS RVVRA+
Sbjct: 94 ------------------VYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGEL 135
Query: 120 XXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXE 179
QV D+ +V L L++IH+HKTA LLEAS E
Sbjct: 136 AKAIGTEGLVAGQVVDI----SNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIE 191
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
R+R +ARCIGLLFQVVDDILDVT ++DK TYPKLMG+E +++FAE+L
Sbjct: 192 RLRKFARCIGLLFQVVDDILDVT--------------IADKLTYPKLMGLEKSREFAEKL 237
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
++A +L F+ K APL LA YI +RQN
Sbjct: 238 NTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 146/264 (55%), Gaps = 3/264 (1%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65
++H AMRYSL GGKRIRP+L AS +LVG SL A ALE H SLIHDDLPA+D
Sbjct: 32 QLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMD 91
Query: 66 NDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXX 125
ND+LRRGKPT H F E T FE ++ T + ++ I
Sbjct: 92 NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPT-SAQPELAIKLIQELVVASGR 150
Query: 126 XXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXX-XXXERVRNY 184
Q+ DL SE K++SL+ELE +HVHKT L++AS ++ Y
Sbjct: 151 NGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAY 210
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244
A IGL FQV DDI+D+T + LGKT D ++KATYPKL+G++ AK L QA
Sbjct: 211 AHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAI 270
Query: 245 KELAYFEVSKAAPLYHLAKYIVSR 268
+++ F K+ PL LA YI+ R
Sbjct: 271 AQISEFG-DKSQPLTDLANYIIDR 293
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 150/270 (55%), Gaps = 5/270 (1%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
PE++H+AMRYS+L GGKR+RP+L A+ + +G L+ ACA+E H SLIHDDLPA
Sbjct: 35 PERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPA 94
Query: 64 LDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAK--TVGVSTDRVVRAITXXXX 121
+D+DDLRRGKPT HK + E T F HV A+ ++ V + + I
Sbjct: 95 MDDDDLRRGKPTCHKAYDEATAILAGDGLQALAF-HVLAQDPSIAVPAENRIAMIETLAK 153
Query: 122 XXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXX-XXXXXXXXXXXER 180
Q DL S GK + L LE +H+ KT L+ AS +R
Sbjct: 154 ASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDR 213
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240
+ +YA+CIGL FQ+ DDILD + LGKT GKD +K YP L+G+ AK+ AEE+
Sbjct: 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMH 273
Query: 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
A + LA F +A L LA++I+ RQ+
Sbjct: 274 EAALESLAGFG-PEADLLRELARFIIQRQS 302
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 146/271 (53%), Gaps = 5/271 (1%)
Query: 4 PE--KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
PE +++EA RYS+ GGKR+RP+L A+CE +GG ACA+E+ H SL+HDDL
Sbjct: 34 PELARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDL 93
Query: 62 PALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRV-VRAITXXX 120
PA D+DDLRRG+PT HK F E F + + ++ + +R +T
Sbjct: 94 PAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLA 153
Query: 121 XXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASX-XXXXXXXXXXXXXXE 179
Q DL S G + LEY H HKT L+EAS +
Sbjct: 154 QAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELK 213
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++ YA+ IGL FQV DDILDV + LGK G D+ DK TYP L+G+ AK++A EL
Sbjct: 214 ALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 273
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
QA L F+ + A PL LA+YIV R++
Sbjct: 274 RDQALHALRPFDAA-AEPLRELARYIVERRS 303
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 146/271 (53%), Gaps = 5/271 (1%)
Query: 4 PE--KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
PE +++EA RYS+ GGKR+RP+L A+CE +GG ACA+E+ H SL+HDDL
Sbjct: 27 PELARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDL 86
Query: 62 PALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRV-VRAITXXX 120
PA D+DDLRRG+PT HK F E F + + ++ + +R +T
Sbjct: 87 PAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLA 146
Query: 121 XXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASX-XXXXXXXXXXXXXXE 179
Q DL S G + LEY H HKT L+EAS +
Sbjct: 147 QAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELK 206
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++ YA+ IGL FQV DDILDV + LGK G D+ DK TYP L+G+ AK++A EL
Sbjct: 207 ALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
QA L F+ + A PL LA+YIV R++
Sbjct: 267 RDQALHALRPFDAA-AEPLRELARYIVERRS 296
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 3/229 (1%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65
++ E+M YSL AGGKRIRPVL + + + + + L M A ALEM HT SLIHDDLPA+D
Sbjct: 29 QLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD 88
Query: 66 NDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRV-VRAITXXXXXXX 124
NDD RRGK TNHKV+GE T FE +++ TD V ++ +
Sbjct: 89 NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD--RLTDEVKIKVLQRLSIASG 146
Query: 125 XXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNY 184
Q+ D+ SEG+ + L LE IH KT LL + E + +Y
Sbjct: 147 HVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESY 206
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK 233
+ +G++FQ+ DD+LD LGK G DL ++K+TY L+G + A+
Sbjct: 207 SYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 255
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 126/234 (53%), Gaps = 2/234 (0%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
++ + ++++M YS+ GGKRIRP+L + S + D ++ A A+EM HT SLIHDDL
Sbjct: 57 EYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDL 116
Query: 62 PALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXX 121
P +DNDDLRRGKPTNHKVFGE + + ++ ++A
Sbjct: 117 PCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLE-EGKSALKATKIIAD 175
Query: 122 XXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXER 180
Q+ D+ +E K ++SL EL+Y+H+ KT +L++AS ++
Sbjct: 176 AAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKK 235
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234
+ + +GL FQ+ DDILDV ++ LGK KD S+K Y + G+E KK
Sbjct: 236 LEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKK 289
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 131/265 (49%), Gaps = 5/265 (1%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
EAMRY LL GGKR RP L + +++G + S + A A+E H SLIHDDLPA+D+D+
Sbjct: 40 EAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDE 99
Query: 69 LRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVS--TDRVVRAITXXXXXXXXX 126
LRRGKPT H F E T F +A + + T RV +
Sbjct: 100 LRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVA-MLQALAEASGAQ 158
Query: 127 XXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLE-ASXXXXXXXXXXXXXXXERVRNYA 185
Q DL +E + +SL ELE IH +KT L+ A + YA
Sbjct: 159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYA 218
Query: 186 RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245
+GL FQV DDILD+ + LGK G D +K+TYP L+G+E A++ A L +A
Sbjct: 219 EAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALL 278
Query: 246 ELAYFEVSKAAPLYHLAKYIVSRQN 270
L + L A+Y+V R+N
Sbjct: 279 ALEAIPYNTEH-LEEFARYVVERKN 302
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 133/271 (49%), Gaps = 10/271 (3%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65
+I A+ Y+L +GGKRIRP+L + +L+ D+ ++ +A ALE+TH SLIHDDLPA+D
Sbjct: 37 QIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD 96
Query: 66 NDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXX- 124
NDDLRRGKP+ HK F E T E + + + V AIT
Sbjct: 97 NDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASG 156
Query: 125 XXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXER-VR 182
Q DL K V+ +L IH+ KT KL+ A + +R
Sbjct: 157 ISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALR 216
Query: 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL--- 239
Y + IGL+FQ+ DD LD+ + +LGK D + K T+ L N ++ EE+
Sbjct: 217 TYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF---NKQQLEEEIAVH 273
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+ A L F SKAA L L K + +R N
Sbjct: 274 YQIAMDSLRLFG-SKAAALIELTKQLQNRSN 303
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 133/265 (50%), Gaps = 6/265 (2%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
E M+Y L GGKR+RP L A+ + G + + A A+E H SLIHDDLPA+D+DD
Sbjct: 58 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 117
Query: 69 LRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDR-VVRAITXXXXXXXXXX 127
LRRG PT H FGE F ++ + +DR + I+
Sbjct: 118 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAG 177
Query: 128 XXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN-YAR 186
Q DLD+EGK V L LE IH HKT L+ A+ V + YA
Sbjct: 178 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 237
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS---QA 243
IGL FQV DDILDV + LGK G D K+TYP L+G+E A+K A +L QA
Sbjct: 238 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQA 297
Query: 244 TKELAYFEVSKAAPLYHLAKYIVSR 268
K+LA + +A L LA YI+ R
Sbjct: 298 LKQLAEQSLDTSA-LEALADYIIQR 321
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 133/265 (50%), Gaps = 6/265 (2%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
E M+Y L GGKR+RP L A+ + G + + A A+E H SLIHDDLPA+D+DD
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 69 LRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDR-VVRAITXXXXXXXXXX 127
LRRG PT H FGE F ++ + +DR + I+
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 128 XXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN-YAR 186
Q DLD+EGK V L LE IH HKT L+ A+ V + YA
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS---QA 243
IGL FQV DDILDV + LGK G D K+TYP L+G+E A+K A +L Q+
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 244 TKELAYFEVSKAAPLYHLAKYIVSR 268
K+LA + +A L LA YI+ R
Sbjct: 274 LKQLAEQSLDTSA-LEALADYIIQR 297
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 133/265 (50%), Gaps = 6/265 (2%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
E M+Y L GGKR+RP L A+ + G + + A A+E H SLIHDDLPA+D+DD
Sbjct: 35 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 94
Query: 69 LRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDR-VVRAITXXXXXXXXXX 127
LRRG PT H FGE F ++ + +DR + I+
Sbjct: 95 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 154
Query: 128 XXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN-YAR 186
Q DLD+EGK V L LE IH HKT L+ A+ V + YA
Sbjct: 155 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 214
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS---QA 243
IGL FQV DDILDV + LGK G D K+TYP L+G+E A+K A +L Q+
Sbjct: 215 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 274
Query: 244 TKELAYFEVSKAAPLYHLAKYIVSR 268
K+LA + +A L LA YI+ R
Sbjct: 275 LKQLAEQSLDTSA-LEALADYIIQR 298
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 6/232 (2%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGD---ESLVMPMACALEMTHTMSLIHDDLP 62
++ AM YS+LAGGKR+RP+L +A+ + +G E P+ ALE+ HT SLIHDDLP
Sbjct: 35 QLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPV-MALELLHTYSLIHDDLP 93
Query: 63 ALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXX 122
A+DND LRRG+PTNH FG F+ + A + + + +
Sbjct: 94 AMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAAL--VQALATA 151
Query: 123 XXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVR 182
Q D+ SE ++ LS+L +H KT LL +
Sbjct: 152 AGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYL 211
Query: 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234
+A GL FQ+ DDILDV S +GK KD K TYP +G+ A +
Sbjct: 212 QFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQ 263
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 3/230 (1%)
Query: 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD-ESLVMPMACALEMTHTMSLIHDDLPA 63
E++ EAM YS+ AGGKR+RP+L + + + E+ +A +LEM HT SLIHDDLPA
Sbjct: 36 ERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPA 95
Query: 64 LDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXX 123
+D+DDLRRGKPTNHKVFGE T F+ ++ + V +
Sbjct: 96 MDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQ--LGLSEKVLLMQQLAKAA 153
Query: 124 XXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN 183
Q+ D++ E ++L EL +H KT L+E + +
Sbjct: 154 GNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQ 213
Query: 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK 233
+A GL FQ+ DD+LD T + LGK G+D +K+TYP L+GI AK
Sbjct: 214 FAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAK 263
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 134/270 (49%), Gaps = 1/270 (0%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
+ P+ + EAMR+ +L GGKR+RP L I S L+GGD + + ALE H SL+HDD
Sbjct: 67 ITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDD 126
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXX 120
LPA+D+DDLRRG+PT H+ F E T F+ +A+ ++ +R +
Sbjct: 127 LPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLA 186
Query: 121 XXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXER 180
Q DL +E K + + KT LL + +R
Sbjct: 187 RAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQR 246
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240
+R + IGL FQ+ DD+LD+T + +GK GKD K T L G A++ +E
Sbjct: 247 LRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306
Query: 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
++A++ LA + KAA L A++I R++
Sbjct: 307 AEASELLAPYG-EKAAILIAAARFIAERKS 335
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 118/250 (47%), Gaps = 14/250 (5%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASC-----ELVGGDESLVMPMACALEMTHTMSLI 57
HP +EA+ L AGGK R L ++ EL+ + +A ALE HT SLI
Sbjct: 24 HP-FFNEALALXLKAGGKHFRAQLLLSVVQSNKPELLNQ----ALDVALALEFIHTYSLI 78
Query: 58 HDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAIT 117
HDDLPA DN D RRG PT HK + E T F + + + ++ I
Sbjct: 79 HDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAF--LVLSHAHLKDEIKIKLIK 136
Query: 118 XXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXX 177
Q D E K +SL+ELE++H HKTA+L+ A+
Sbjct: 137 TLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICELNNEE 196
Query: 178 XERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
++ +GL+FQ+ DDI+DVT S GK D+ K ++ L+G+E A K E
Sbjct: 197 SNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVNLLGLEQAIKTKE 254
Query: 238 ELFSQATKEL 247
L ++ ++L
Sbjct: 255 NLLNECEQDL 264
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 121/265 (45%), Gaps = 10/265 (3%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDN 66
+ +AM Y+ GGKR+R L I S + G + MP A A+E H SL+HDD+P +DN
Sbjct: 31 LRDAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMDN 89
Query: 67 DDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXX 126
DDLRRG PT HK + + T FE +G + +RV +
Sbjct: 90 DDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVA-LVAALAQASGAE 148
Query: 127 XXXXXQVTDLDSEGKDV--SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNY 184
Q D+ +E V +L E+ + KT L+ + + Y
Sbjct: 149 GMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGP---LTAY 205
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK-KFAEELFSQA 243
A +GL FQ+ DDILDV + GK GKD + KAT+ L+G+ AK + A+ +
Sbjct: 206 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 265
Query: 244 TKELAYFEVSKAAPLYHLAKYIVSR 268
Y E A+ L A+Y++ R
Sbjct: 266 AALAPYGEA--ASTLRACARYVIER 288
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 9/233 (3%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
+ P ++EA R+ LAGGKR+RP + + S E VGGD + A A+E+ H SL+HDD+
Sbjct: 29 KDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDI 88
Query: 62 PALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVA-AKTVGVSTDRVVRAITXXX 120
+D D+ RRGKPT H+++G FE VA A+ RV+ I
Sbjct: 89 --MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIV--- 143
Query: 121 XXXXXXXXXXXQVTDLDSEGKD-VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXE 179
Q DL+ E K V++ E + KT L EAS +
Sbjct: 144 --KASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIK 201
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA 232
+ ++ R +G+ FQ+ DD+LD+ LGK G D+ K T ENA
Sbjct: 202 ALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENA 254
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIAS-CELVG-----GDESLVMPMACALEMTHTMSL 56
HP + +A +L GGKR RP L +A C LVG ++ +A ++E HT SL
Sbjct: 33 HP-YLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 91
Query: 57 IHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAI 116
IHDDLP +DN LRR PT H + E T FE ++ + + +V I
Sbjct: 92 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNAL--LESHIIVELI 149
Query: 117 TXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXX-X 175
Q D E ++L +L ++H HKTAKL+ AS
Sbjct: 150 KILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDE 209
Query: 176 XXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
+ ++ + +GL FQV+DDI+DVT+ GKT D S K ++ L+G+E A +
Sbjct: 210 ELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNY 267
Query: 236 AEELFSQATKEL 247
A+ L ++ +L
Sbjct: 268 AQTLKTEVLNDL 279
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIAS-CELVG-----GDESLVMPMACALEMTHTMSL 56
HP + +A +L GGKR RP L +A C LVG ++ +A ++E HT SL
Sbjct: 40 HP-YLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 98
Query: 57 IHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAI 116
IHDDLP +DN LRR PT H + E T FE ++ + + +V I
Sbjct: 99 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNAL--LESHIIVELI 156
Query: 117 TXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXX-X 175
Q D E ++L +L ++H HKTAKL+ AS
Sbjct: 157 KILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDE 216
Query: 176 XXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
+ ++ + +GL FQV+DDI+DVT+ GKT D S K ++ L+G+E A +
Sbjct: 217 ELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNY 274
Query: 236 AEELFSQATKEL 247
A+ L ++ +L
Sbjct: 275 AQTLKTEVLNDL 286
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 14/229 (6%)
Query: 17 AGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76
AGGKR+RP++ +A+ L G D +A A+E HT +L+HDD+ +D LRRGK
Sbjct: 63 AGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV--VDGSQLRRGKVAA 120
Query: 77 HKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDL 136
H ++G FE + + + + RA +V L
Sbjct: 121 HLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARA---------SRVIAEGEVLQL 171
Query: 137 DSEGKDVSLSELEYIHV--HKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQV 194
D++LS+ Y+ + KTA+L A+ E +R+Y +GL FQ+
Sbjct: 172 -MRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQL 230
Query: 195 VDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243
DD LD ++ LGK AG D KAT P L+ I + E + +A
Sbjct: 231 ADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERA 279
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 10/243 (4%)
Query: 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPAL 64
E I++A + L +GGKR+RP+ + S L + ++ A +LE+ H SL+HDD +
Sbjct: 30 ETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY--I 87
Query: 65 DNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXX 124
DN D+RRG + H F + T +++A T+ S + + T
Sbjct: 88 DNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIA--TINNSKFHQIFSKTILEVCFG 145
Query: 125 XXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNY 184
D VS + KTA L+EAS ++ +
Sbjct: 146 EFDQMA------DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQF 199
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244
CIG+ +Q++DDILD T LGK G D+ + TYP + I N K+ ++
Sbjct: 200 GHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVV 259
Query: 245 KEL 247
K L
Sbjct: 260 KHL 262
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 16/237 (6%)
Query: 8 HEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDND 67
EAM YS GG RIRP+L + E +G +E ++ +A A+E+ HT SLIHDDLP +DN
Sbjct: 35 EEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 68 DLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXX 127
D RRG P+ H+ +GE F ++ + +
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX---------IGNSXIFEEFSETAYX 145
Query: 128 XXXXQVTDLDSEGKDVSLSE--LEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYA 185
+ D++ E + + +S+ +E ++ T L +
Sbjct: 146 LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLL---G 202
Query: 186 RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242
G+ FQ+ DD+ D+ S +GK GKD ++ T +GI+ A++ A+ + +
Sbjct: 203 EXFGVAFQIYDDLXDILGSFEKVGKDLGKD--TEXVTLVXXVGIQXAREMADXYYEE 257
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 19/223 (8%)
Query: 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPAL 64
E EA+ Y + GGKR+RP+L +A+ E V G +P A +E+ H SLI+DD+ +
Sbjct: 31 EDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDI--I 88
Query: 65 DNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVA--------AKTVGVSTDRVVRAI 116
D D+RRG PT K FG+ E V AK V V++AI
Sbjct: 89 DRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVA----EVIKAI 144
Query: 117 TXXXXXXXXXXXXXXQVTD---LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXX 173
+D + + ++V+L + + KT L+ A+
Sbjct: 145 DEGERLDILFEAAGR--SDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSD 202
Query: 174 XXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDL 216
E N+ G+ FQ++DD+LD+ GK GKD+
Sbjct: 203 DRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDI 245
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 23/247 (9%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
+H +I E + + AGGKR+RP+L +A+ LVG + +A +E HT +L+HDD+
Sbjct: 36 EHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDV 95
Query: 62 PALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTD----RVVRAIT 117
+D RRG+PT + ++ + +++ A++ + TD RV+ +
Sbjct: 96 --VDESRQRRGRPTANLLWDNKSSVLVG--------DYLFARSFQLMTDTGNMRVMEILA 145
Query: 118 XXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASXXXXXXXXXXXX 175
+V L + ++++ +E Y+ V KTA L A+
Sbjct: 146 -----NASAVIAEGEVLQL-TAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPE 199
Query: 176 XXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
+ + +Y +G+ FQ+VDD+LD S +GK G D K T P + + A +
Sbjct: 200 DQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADE- 258
Query: 236 AEELFSQ 242
AE F +
Sbjct: 259 AERAFWK 265
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 85/208 (40%), Gaps = 9/208 (4%)
Query: 18 GGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNH 77
GGK +RP L + S E+ G + +P A A+E+ H SL+HDDL +D D+ RR + T
Sbjct: 53 GGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVW 110
Query: 78 KVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLD 137
KV G P V + V R R +T Q D+
Sbjct: 111 KVHG-PAQAILVGDALFALANEVLLELGTVEAGRATRRLT-----KASRSLIDGQAQDIS 164
Query: 138 SEGKD-VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVD 196
E +D VS+ E + +KT LL + + + Y +GL FQ VD
Sbjct: 165 YEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224
Query: 197 DILDVTKSSTVLGKTAGKDLVSDKATYP 224
D+L + GK DL K + P
Sbjct: 225 DLLGIWGDPDATGKQTWSDLRQRKKSLP 252
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 9/254 (3%)
Query: 18 GGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNH 77
GGKR+R L I S + G + P A A+E H SL+HDD P DNDDLRRG PT H
Sbjct: 40 GGKRLRAFLAIESAAIHGISXAQAXPAALAVEALHAYSLVHDDXPCXDNDDLRRGLPTVH 99
Query: 78 KVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLD 137
K + + T FE +G + +RV + Q D+
Sbjct: 100 KKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVA-LVAALAQASGAEGXVYGQALDIA 158
Query: 138 SEGKDV--SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
+E V +L E+ + KT L+ + + YA +GL FQ+
Sbjct: 159 AETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGP---LTAYATALGLAFQIA 215
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK-KFAEELFSQATKELAYFEVSK 254
DDILDV + GK GKD + KAT+ L+G+ AK + A+ + Y E
Sbjct: 216 DDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA-- 273
Query: 255 AAPLYHLAKYIVSR 268
A+ L A+Y++ R
Sbjct: 274 ASTLRACARYVIER 287
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 17 AGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76
+GGKRIRP++ + E+ G S + A A+E H+ SLIHDDL LD +RR P+
Sbjct: 40 SGGKRIRPIILLLVSEICSGSYSRSLNAALAVEXXHSASLIHDDL--LDQGLVRRNLPSA 97
Query: 77 HKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDL 136
+ FG P+ +++ AK++ + + I +V DL
Sbjct: 98 PEKFG-PSGALLCG-------DYLIAKSIAFISPYGEKVIQ--DFGKAGXDXAEGEVLDL 147
Query: 137 DSEGKDVSLSELEYIHV--HKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQV 194
E D S E +Y KTA L S ER ++ +G +Q+
Sbjct: 148 KLE--DESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQI 205
Query: 195 VDDILD 200
VDDIL+
Sbjct: 206 VDDILE 211
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 17/226 (7%)
Query: 17 AGGKRIRPVLCIASCELVGGDESL---VMPMACALEMTHTMSLIHDDLPALDNDDLRRGK 73
AGGKR RP+ + + E G++ L V+ A +E+TH +L HDD+ +D +RRG
Sbjct: 72 AGGKRFRPMFALLASEF--GEKPLSENVIKAAVVVEITHLATLYHDDV--MDEASMRRGV 127
Query: 74 PTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQV 133
P+ + + H + + TD V
Sbjct: 128 PSANARW----DNSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRETVGP 183
Query: 134 TDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQ 193
D D + + KT L+ ++ + ++N+ +G++FQ
Sbjct: 184 RDTDP------IEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQ 237
Query: 194 VVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
+VDDI+D+ + GKT G DL T P L + EL
Sbjct: 238 IVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAEL 283
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 15/231 (6%)
Query: 18 GGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNH 77
GK +RP+L + L G + A +LE+ HT SL+HDD+ +D RRG+ + +
Sbjct: 46 NGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVN 103
Query: 78 KVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLD 137
+F H A +T R+V ++ Q++++
Sbjct: 104 AIFNNKVSVLAGDYLLATSLVH-AEQTNNYEIIRLVSSL-----GQKLAEGELLQLSNVS 157
Query: 138 SEGKDVSLSELEYIHV--HKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
+ S SE Y V KTA L A R IG+ FQ+
Sbjct: 158 NH----SFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIK 213
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246
DDI D S + GK G D++ K T P L + K E + KE
Sbjct: 214 DDIFDYFDSKKI-GKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKE 263
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 11 MRYSLLAGGKRIRPVLCIASCELVGG----DESL--VMPMACALEMTHTMSLIHDDLPAL 64
+R +L GGKRIRP+ A G E L V+ A +LE +LIHDD+ +
Sbjct: 54 LRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--I 111
Query: 65 DNDDLRRGKPTNHK 78
D+ D RRG PT H+
Sbjct: 112 DSSDTRRGAPTVHR 125
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238
+Y IG+ FQ+ DD+L V + GK AG D+ K T + ++ A K + E
Sbjct: 244 HYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPE 299
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 69/189 (36%), Gaps = 10/189 (5%)
Query: 49 EMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVS 108
EM H SL+HDD+ LD+ D RRG + + V G +AA +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAA----LK 150
Query: 109 TDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXX 168
VV + + D + + Y KTA L+ S
Sbjct: 151 NTEVVALLATAVEHLVTGETMEITSSTAARYSMDYYMQKTYY----KTASLISNSCKAVA 206
Query: 169 XXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG 228
Y R +GL FQ++DDILD T +S LGK + D+ T P L
Sbjct: 207 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 266
Query: 229 IENAKKFAE 237
+E + E
Sbjct: 267 MEEFPQLRE 275
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 69/189 (36%), Gaps = 10/189 (5%)
Query: 49 EMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVS 108
EM H SL+HDD+ LD+ D RRG + + V G +AA +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAA----LK 150
Query: 109 TDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXX 168
VV + + D + + Y KTA L+ S
Sbjct: 151 NTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYY----KTASLISNSCKAVA 206
Query: 169 XXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG 228
Y R +GL FQ++DDILD T +S LGK + D+ T P L
Sbjct: 207 VLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFA 266
Query: 229 IENAKKFAE 237
+E + E
Sbjct: 267 MEEFPQLRE 275
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 10/215 (4%)
Query: 5 EKIHEAMRYSLLAGGKRIRP-VLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
+ IH + L +GGK +RP + S + + A A+E+ H +LIHDD+
Sbjct: 41 QPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV-- 98
Query: 64 LDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXX 123
+D+ RRG T +G+ F+ V T TDR + I
Sbjct: 99 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKST----TDRSL--IQNHIDAM 152
Query: 124 XXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN 183
DL+ +D++L KTA+L S +R R+
Sbjct: 153 HRILQGELHQMDLNYR-EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRD 211
Query: 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVS 218
IG +Q++DDILD K +DL S
Sbjct: 212 IGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 246
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 10/215 (4%)
Query: 5 EKIHEAMRYSLLAGGKRIRP-VLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
+ IH + L +GGK +RP + S + + A A+E+ H +LIHDD+
Sbjct: 34 QPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDV-- 91
Query: 64 LDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXX 123
+D+ RRG T +G+ F+ V T TDR + I
Sbjct: 92 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKST----TDRSL--IQNHIDAM 145
Query: 124 XXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRN 183
DL+ +D++L KTA+L S +R R+
Sbjct: 146 HRILQGELHQMDLNYR-EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRD 204
Query: 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVS 218
IG +Q++DDILD K +DL S
Sbjct: 205 IGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 239
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ PE + E M + A + LC+A+CELVGGD S M A A+ + H + H++
Sbjct: 27 IRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHEN 86
Query: 61 LPALDN 66
LP D
Sbjct: 87 LPLTDG 92
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 42 MPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVA 101
+ + +EM T SL+HDD+ +D +RR P+ + +FG F ++
Sbjct: 60 LNLCTIVEMIQTASLLHDDV--IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELS 117
Query: 102 AKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLE 161
+G + + +A++ V + + K LE KTA +E
Sbjct: 118 --KMG---ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILE----DKTAHFIE 168
Query: 162 ASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKA 221
AS ++ G+ FQ++DD+LD+T+ + LGK D K
Sbjct: 169 ASLKSMAILLNKDAKI---YADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT 225
Query: 222 TYPKLM 227
T P L+
Sbjct: 226 TLPYLL 231
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 83/225 (36%), Gaps = 21/225 (9%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
E +Y L GK++R L A + E + + EM H SL+ DD+ DN
Sbjct: 15 EPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--DNSK 72
Query: 69 LRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXX 128
LRRG P H ++G P+ E K + + V+ T
Sbjct: 73 LRRGFPVAHSIYGIPSVINSANYVYFLGLE----KVLTLDHPDAVKLFT-------RQLL 121
Query: 129 XXXQVTDLDSEGKD--VSLSELEY--IHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNY 184
Q LD +D +E EY + + KT L + E ++
Sbjct: 122 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLA----VGLMQLFSDYKEDLKPL 177
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGI 229
+GL FQ+ DD ++ K+ +DL K ++P + I
Sbjct: 178 LNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 222
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
PE + M + A LC+A+CELVGGD S M A A+ + H + +H+ LP
Sbjct: 25 PETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPL 84
Query: 64 LDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVST---DRVVRAI 116
D HK +G FE +A T DR++R I
Sbjct: 85 TDGSRPVSKPAIQHK-YGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVI 139
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLP 62
PE + M + A LC+A+CELVGGD S M A A+ + H + +H+ LP
Sbjct: 25 PETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
Q+ I + + LL GK R L + ++ + + ++ +E+ H SL+ DD+
Sbjct: 23 QNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI 82
Query: 62 PALDNDDLRRGKPTNHKVFGEPT 84
DN LRRG+ T+H +FG P+
Sbjct: 83 E--DNAPLRRGQTTSHLIFGVPS 103
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSAKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLYSLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 4 PEKIHEAMRYSLLA-------------------GGKRIRPVLCIASCELVGGDESLVMPM 44
PE I +A++ LLA GGK +R +L + S G +
Sbjct: 5 PEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEA 64
Query: 45 ACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83
A ALE+ L+HDD+ D + RRG+P H++ P
Sbjct: 65 ATALELFQNWVLVHDDIE--DGSEERRGRPALHRLHPMP 101
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA 232
+G FQ+VDD+L++ + GK DL K T L +E A
Sbjct: 204 LGTAFQIVDDVLNL-EGGEAYGKERAGDLYEGKRTLILLRFLEEA 247
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELYHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRA-----ALNVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + ++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKARRA-----ALNVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 46 CALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTV 105
ALE+ H SL+HDD+ +D RRGK T + ++G+ F V
Sbjct: 68 AALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEE--- 122
Query: 106 GVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXX 165
+ +++ RA ++ + S K ++ E I K+ L +
Sbjct: 123 -IGNNKLRRAFL-----NVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLA-- 174
Query: 166 XXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPK 225
E + N IG ++Q+ DDI+D + GK DL + A++P
Sbjct: 175 -LQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKI-GKDGFLDLKNGVASFPL 232
Query: 226 LMGIENAKKFAE 237
+ +E KF E
Sbjct: 233 VTAME---KFPE 241
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 46 CALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTXXXXXXXXXXXXFEHVAAKTV 105
ALE+ H SL+HDD+ +D RRGK T + ++G+ F V
Sbjct: 68 AALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEE--- 122
Query: 106 GVSTDRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASXX 165
+ +++ RA ++ + S K ++ E I K+ L +
Sbjct: 123 -IGNNKLRRAFL-----NVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLA-- 174
Query: 166 XXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPK 225
E + N IG ++Q+ DDI+D + GK DL + A++P
Sbjct: 175 -LQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKI-GKDGFLDLKNGVASFPL 232
Query: 226 LMGIENAKKFAE 237
+ +E KF E
Sbjct: 233 VTAME---KFPE 241
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 19 GKRIRPVLCIASCELVGGD--ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTN 76
GK +R L I S + G + E+ + +A ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEAAISSLA-ALELVHLASLLHDDV--IDGARFRRGKETI 96
Query: 77 HKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTDL 136
+ ++G+ F V ++ RA ++ +
Sbjct: 97 NFMYGDKAAVAAGDLVLVSAFHTVEE----AGNNKARRA-----ALNVIGKMSEAELIEQ 147
Query: 137 DSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVD 196
S K ++ E I K+ L + E + N IG ++Q+ D
Sbjct: 148 LSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMFD 204
Query: 197 DILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DI+D + GK DL + A++P + +E KF E
Sbjct: 205 DIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ EH + + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSA-EHTVEE---IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H L+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLYFLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 15 LLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKP 74
+L GKR R L + +GGD A A+E+ H+ SL DD+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRGDK 102
Query: 75 TNHKVFG 81
V+G
Sbjct: 103 AAWVVYG 109
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H L+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLAFLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RRGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V ++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----AGNNKARRA-----ALNVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D RGK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFARGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 23/222 (10%)
Query: 19 GKRIRPVLCIASCELVG---GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPT 75
GK +R L I S + G G++++ ALE+ H SL+HDD+ +D R GK T
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAI--SSLAALELVHLASLLHDDV--IDGARFRAGKET 95
Query: 76 NHKVFGEPTXXXXXXXXXXXXFEHVAAKTVGVSTDRVVRAITXXXXXXXXXXXXXXQVTD 135
+ ++G+ F V + +++ RA ++ +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTVEE----IGNNKLRRAFL-----NVIGKMSEAELIE 146
Query: 136 LDSEGKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVV 195
S K ++ E I K+ L + E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLA---LQLPALLEGELGEDLYNLGVTIGTIYQMF 203
Query: 196 DDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
DDI+D + GK DL + A++P + +E KF E
Sbjct: 204 DDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 179 ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE 230
+++ + + +G FQ+ DD LD+ ST GK G D+ ++K T+P + E
Sbjct: 270 KKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKV-GSDIQNNKLTWPLIKTFE 320
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 179 ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE 230
+++ + + +G FQ+ DD LD+ ST GK G D+ ++K T+P + E
Sbjct: 269 KKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKV-GSDIQNNKLTWPLIKTFE 319
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 15 LLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKP 74
+L GKR R L + +GGD A A+E+ H+ SL D+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDK 102
Query: 75 TNHKVFG 81
V+G
Sbjct: 103 AAWVVYG 109
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY--PKLMGIENAKKFAE 237
V A IG FQV DD++D LGK G D+ K ++ +G NA + AE
Sbjct: 234 VERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAAQVAE 291
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY--PKLMGIENAKKFAE 237
V A IG FQV DD++D LGK G D+ K ++ +G NA + AE
Sbjct: 235 VERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAAQVAE 292
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY--PKLMGIENAKKFAE 237
V A IG FQV DD++D LGK G D+ K ++ +G NA + AE
Sbjct: 235 VERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAAQVAE 292
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 179 ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
E + N IG ++Q+ DDI+D + GK DL + A++P + +E KF E
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEKI-GKDGFLDLKNGVASFPLVTAME---KFPE 241
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY--PKLMGIENAKKFAE 237
V A IG FQV DD+ D LGK G D+ K ++ +G NA + AE
Sbjct: 235 VERVAHLIGEYFQVQDDVXDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAAQVAE 292
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 260 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 294
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 258 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 292
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 256 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 290
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 257 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 291
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 256 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 290
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 238 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 272
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 232 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 266
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 231 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 265
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223
+G FQ+ DD LD+ +V GK G D+ +K ++
Sbjct: 237 MGEFFQIQDDYLDLFGDPSVTGKI-GTDIQDNKCSW 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,247,475
Number of Sequences: 62578
Number of extensions: 203877
Number of successful extensions: 640
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 112
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)