BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024239
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/271 (68%), Positives = 224/271 (82%), Gaps = 1/271 (0%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
+Q P KIHE+MRYSLLAGGKR+RP LC+A+CELVGG++S+ MP ACA+EM HTMSLIHDD
Sbjct: 100 LQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDD 159
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LP +DNDDLRRGKPTNH VFGE A+LAGDALLA AFEH+A T+ VS+ R+VRA+ EL
Sbjct: 160 LPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELA 219
Query: 121 SALGAEGLLKGQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
A+GAEGL+ GQV D++SEG +V L +LE+IH+HKTAKLLE +VV G I+GGG E+E
Sbjct: 220 KAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVE 279
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++R YAR IGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GIE +++FAE+L
Sbjct: 280 KLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKL 339
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A ++LA F+ KAAPL LA YI RQN
Sbjct: 340 NKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/275 (68%), Positives = 219/275 (79%), Gaps = 5/275 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ES MP ACA+EM HTMSLIHDD
Sbjct: 97 LREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDD 156
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG--VSTDRVVRAITE 118
LP +DNDDLRRGKPTNHKVFGE A+LAGDALL+ AFEH+A+ T VS RVVRA+ E
Sbjct: 157 LPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGE 216
Query: 119 LGSALGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNV 175
L A+G EGL+ GQV D+ SEG DV L LE+IH+HKTA LLEAS V G I+GGG+
Sbjct: 217 LAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSD 276
Query: 176 IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
EIER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPK+MG+E +++F
Sbjct: 277 DEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREF 336
Query: 236 AEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
AE+L +A +L F+ K APL LA YI RQN
Sbjct: 337 AEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/271 (66%), Positives = 219/271 (80%), Gaps = 1/271 (0%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHE+MRYSLLAGGKR+RP+LCIA+CEL GG ES+ MP ACA+EM HTMSL+HDD
Sbjct: 87 VREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDD 146
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LP +DNDDLRRGKPTNHKVFGE A+LAGDALLA AFEH+A T GVS++R+VR + EL
Sbjct: 147 LPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELA 206
Query: 121 SALGAEGLLKGQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
+G+EGL+ GQV D+ SEG DV L LE+IH+HKTA LLE SVV G I+GG N +I
Sbjct: 207 KCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQIS 266
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GI+ +++FAE+L
Sbjct: 267 KLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKL 326
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A ++LA F+ KAAPL LA YI R N
Sbjct: 327 NREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/274 (68%), Positives = 221/274 (80%), Gaps = 4/274 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHEAMRYSLLAGGKR+RPVLCIA+CELVGG+ESL MP CA+EM HTMSLIHDD
Sbjct: 93 LREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDD 152
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITEL 119
LP +DNDDLRRGKPTNHKV+GE A+LAGDALL+ AFEH+A+ T VS RVVRA+ EL
Sbjct: 153 LPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGEL 212
Query: 120 GSALGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVI 176
A+G EGL+ GQV D+ SEG D V L L++IH+HKTA LLEAS V G IIGGG+
Sbjct: 213 AKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDE 272
Query: 177 EIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236
EIER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKLMG+E +++FA
Sbjct: 273 EIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFA 332
Query: 237 EELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
E+L ++A +L F+ K APL LA YI +RQN
Sbjct: 333 EKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 218/273 (79%), Gaps = 4/273 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P KIHEA+RYSLLA GKR+RPVLCIA+CELVGG+ES+ +P ACA+EM HTMSLIHDD
Sbjct: 76 LREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAACAVEMIHTMSLIHDD 135
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LP +DNDDLRRGKPTNHKVFGE A+LAGDAL++ AFEH+A T VS RVVRAI EL
Sbjct: 136 LPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATST-AVSPARVVRAIGELA 194
Query: 121 SALGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIE 177
A+G++GL+ GQV DL S G DV L LE+IHVHKTA LLEA+ V G I+GGG+ E
Sbjct: 195 KAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEE 254
Query: 178 IERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
+E++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKLMG+E +K FA+
Sbjct: 255 VEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPKLMGLEKSKDFAD 314
Query: 238 ELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+L S A ++L F+ S+ PL LA YI RQN
Sbjct: 315 KLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/271 (64%), Positives = 212/271 (78%), Gaps = 1/271 (0%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P IHEAMRYSLLAGGKR+RP+LC+A+CELVGG++ M ACA+EM HTMSLIHDD
Sbjct: 99 VKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDD 158
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LP +DNDDLRRGKPTNHK++GE A+LAGD+LLA AFEH+ T GV+ R+V A+ EL
Sbjct: 159 LPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELA 218
Query: 121 SALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
++G EGL+ GQV D+ G VSL LE+IHVHKTA LLE+SVV G I+GGG +E+E
Sbjct: 219 KSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVE 278
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV DK TYPKL+G+E AK+FA EL
Sbjct: 279 KLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAEL 338
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A ++L F+ KAAPL LA YI R N
Sbjct: 339 NREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/270 (61%), Positives = 203/270 (75%), Gaps = 5/270 (1%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
P IH+AMRY++LAGGKR+RP+LC+A+CELVGG+E L + ACA+EM HTMSLI DDLP
Sbjct: 105 PLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPC 164
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSAL 123
+DNDDLRRGKPT HKVFGE AIL+G ALLALAFEH+ VS+ ++VRA+ EL ++
Sbjct: 165 MDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSI 222
Query: 124 GAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIER 180
G +GL+ GQ DL SEG DV L +LEYIHVHKT LLEAS V G +IGGG EIE+
Sbjct: 223 GTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 282
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240
VRN+ARCIGLLFQVVDDILD TKSS LGKTAGKD V+ K TYPK++G+E +K+F E+L
Sbjct: 283 VRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLK 342
Query: 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
A + L F+ K PL L +I +R +
Sbjct: 343 RDAREHLQGFDSDKVKPLIALTNFIANRNH 372
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 329 bits (844), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 199/270 (73%), Gaps = 5/270 (1%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
P KIHEAMRY++LA GKR+RP+LC+ASCELVGG E+ MP ACA+EM HTMSLI DDLP
Sbjct: 109 PLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPC 168
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSAL 123
+DNDDLRRGKPT HKV+GE AIL+G ALL+LAFEH+ T +S++R+V A+ EL ++
Sbjct: 169 MDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT--TAEISSERMVWAVRELARSI 226
Query: 124 GAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIER 180
G GL+ GQ D+ SEG D V L LE+IHVHKTA LLE + V G IIGGG+ EIE
Sbjct: 227 GTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIES 286
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240
VR +ARCIGLLFQVVDDILD TKSS LGKTAGKD ++ K TYPKL+G+E +K+F + L
Sbjct: 287 VRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLT 346
Query: 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
A + L F K APL L +I +R
Sbjct: 347 KDARQHLQGFSSEKVAPLVALTTFIANRNK 376
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 320 bits (819), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 212/274 (77%), Gaps = 4/274 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+ M ACA+EM HT SLIHDD
Sbjct: 88 LREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDD 147
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITEL 119
LP +DN DLRRGKPTNHKVFGE A+LAGDALLALAFEH+ + G V+++R++RA+ EL
Sbjct: 148 LPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTVVSSGLVASERMIRAVVEL 207
Query: 120 GSALGAEGLLKGQVTDLDSE---GKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVI 176
A+G +GL+ GQV DL SE DV L LE+IH+HKTA LLEA+ V G I+GGG
Sbjct: 208 ARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAAAVIGAIMGGGTEE 267
Query: 177 EIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236
EIE++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +++ A
Sbjct: 268 EIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSREVA 327
Query: 237 EELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
E+L +A ++L FE KAAPL LA YI R +
Sbjct: 328 EKLSREAEEQLLGFESDKAAPLVALASYISCRND 361
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/276 (58%), Positives = 203/276 (73%), Gaps = 8/276 (2%)
Query: 1 MQHPE-KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHD 59
++ PE KI EAMRY+LL+ GKR+RP+LC+A+CELVGG ES M ACA+EM H SLI D
Sbjct: 71 LREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILD 130
Query: 60 DLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITE 118
DLP +DND LRRGKPTNH VFGE AILA AL+ALA + + T V +R+++ + E
Sbjct: 131 DLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPPERILKTVQE 190
Query: 119 LGSALGAEGLLKGQVTDLDSEG----KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGN 174
+ A+ EGL+ GQ DL EG D L LE+IH+HKTA LLEA+ V G I+GGG+
Sbjct: 191 MVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIMGGGS 248
Query: 175 VIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234
EIER+R+YARCIGL+FQVVDD+LDVTKSS LGKTAGKDL++ K TYP+LMG+E +K+
Sbjct: 249 DEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMGVEKSKE 308
Query: 235 FAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+AE L +A + L F++ K APL LA YIV+RQN
Sbjct: 309 YAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/271 (57%), Positives = 204/271 (75%), Gaps = 6/271 (2%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65
++H+AMRY+LL GGKR+RP+LC+ +CELVGG ES MP ACA+EM H SLI DDLP +D
Sbjct: 66 EVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMD 125
Query: 66 NDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKT-VGVSTDRVVRAITELGSALG 124
+D LRRGKPTNHKVFGE T+ILA +AL +LA + A T +GV+++RV+RA+ E+ A+G
Sbjct: 126 DDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVG 185
Query: 125 AEGLLKGQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
EGL+ GQ DL E +D L LE +HVHKTA L+EA+ V G I+GGG+ EIE
Sbjct: 186 TEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIE 245
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
R+++YARC+GL+FQV+DD+LD TKSS LGKTAGKDL++ K TYPK+MG++NA+++A+ L
Sbjct: 246 RLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRL 305
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A + L F+ K PL LA YIV RQN
Sbjct: 306 NREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 303 bits (776), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 213/274 (77%), Gaps = 4/274 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
+Q P I EA+RYSLLAGGKR+RP+LCIA+CELVGGDE+ M ACA+EM HT SLIHDD
Sbjct: 84 LQEPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDD 143
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITEL 119
LP +D+ DLRRGKPTNHK FGE A+LAGDALLALAFEH+ + G V+ +R++RA+ EL
Sbjct: 144 LPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAFEHMTFVSNGLVAPERMIRAVMEL 203
Query: 120 GSALGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVI 176
A+G +GL+ GQVTDL S+G DV L LE+IH+HKTA LLEA+ V G I+GGG
Sbjct: 204 AKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAALLEAAAVLGAIMGGGTEE 263
Query: 177 EIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236
EIE++R YARCIGLLFQVVDDILDVT+S+ LGKTAGKD+++ K TYP+L+G+E +++ A
Sbjct: 264 EIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTYPRLIGLERSREVA 323
Query: 237 EELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
E+L +A ++L F+ KAAPL LA YI R N
Sbjct: 324 EKLRREAAEQLLGFDSDKAAPLVALASYIACRHN 357
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 303 bits (776), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/274 (62%), Positives = 212/274 (77%), Gaps = 4/274 (1%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P + EA+RYSLLAGGKR+RP+LCIA CELVGGDE+ M ACA+EM HT SLIHDD
Sbjct: 87 LREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDD 146
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITEL 119
LP +DN DLRRGKPTNHKV+GE A+LAGDALLALAFEH+ + G V+ +R++RA+ EL
Sbjct: 147 LPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVEL 206
Query: 120 GSALGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVI 176
A+G GL+ GQ+ DL SE + V L LE+IH+HKTA LLEA+ V GVI+GGG
Sbjct: 207 ARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEE 266
Query: 177 EIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236
EIE++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +K+ A
Sbjct: 267 EIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVA 326
Query: 237 EELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
E+L +A ++L F+ SKAAPL LA YI R N
Sbjct: 327 EKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 301 bits (772), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/271 (62%), Positives = 211/271 (77%), Gaps = 4/271 (1%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
P I EA+RYSLLAGGKR+RP+LCIA+CELVGGDE+ M ACA+EM HT SLIHDDLP
Sbjct: 90 PLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPC 149
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITELGSA 122
+DN DLRRGKPTNHKV+GE A+LAGDALLALAFEH+ + G V+ ++++RA+ EL A
Sbjct: 150 MDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPEKMIRAVVELARA 209
Query: 123 LGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
+G GL+ GQ+ DL SE + V L LE+IH+HKTA LLEA+ V GVI+GGG EIE
Sbjct: 210 IGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEQEIE 269
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +++ AE+L
Sbjct: 270 KLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLEGSREVAEKL 329
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A ++L F+ SKAAPL LA YI R N
Sbjct: 330 RREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 300 bits (769), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 213/273 (78%), Gaps = 4/273 (1%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDL 61
Q P I EA+RYSLLAGGKR+RP+LCIA+CELVGGDE+ M ACA+EM HT SLIHDDL
Sbjct: 88 QDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDL 147
Query: 62 PALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITELG 120
P +D+ DLRRGKPTNHKVFGE A+LAGDALLALAFEH+ + G V+ +R++R++TEL
Sbjct: 148 PCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAFEHMTVVSSGLVAPERMIRSVTELA 207
Query: 121 SALGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIE 177
A+G +GL+ GQV+DL S+G DV L LE+IH+HKTA LLEA+ V G IIGGG E
Sbjct: 208 KAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKTAALLEAAAVLGAIIGGGTEEE 267
Query: 178 IERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
I+++R Y RCIGLLFQVVDDI+DVT+S+ LGKTAGKD+++ K TYP+L+G+E +++ AE
Sbjct: 268 IQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKDVMARKLTYPRLIGLERSREVAE 327
Query: 238 ELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+L +A ++L F+ +K APL LA YI R N
Sbjct: 328 KLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 298 bits (762), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 191/269 (71%), Gaps = 2/269 (0%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLP 62
+P I++++RYSL AGGKRIRP+LC+ASCEL GG + +P ACALEM HTMSLIHDDLP
Sbjct: 33 NPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLP 92
Query: 63 ALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSA 122
A+DND RRGKPTNH ++GE AILAGDALLA AFE +A +T V D +V+ I ++ +
Sbjct: 93 AMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHS 152
Query: 123 LGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERV 181
+ GL+ GQ+ DL SEGK D +L L +IH+HKT LLEA+V+ G ++ G ++ R
Sbjct: 153 VTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRF 212
Query: 182 RNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241
YA+ IGL FQ++DD+LD+ + LGK+ GKDL + KATYP G+E + K AE L
Sbjct: 213 LRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVE 272
Query: 242 QATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+A +E+ YF+ +KA PL +A +IV+R N
Sbjct: 273 EAKEEILYFD-NKAIPLIAIADFIVNRNN 300
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 170/264 (64%), Gaps = 9/264 (3%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
++ P K+ +AM YSL AGGKRIRP+L +++ +G D ++ +P+ACA+EM HT SLIHDD
Sbjct: 28 LEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDD 87
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRV-----VRA 115
LP++DNDDLRRGKPTNHKVFGE AILAGD LL AF+ + + +R+ +R
Sbjct: 88 LPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITE----IDDERIPPSVRLRL 143
Query: 116 ITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNV 175
I L A G EG++ GQ D++ EGK ++LSELEYIH HKT K+L+ SV G +IGG +
Sbjct: 144 IERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVHAGALIGGADA 203
Query: 176 IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
+ + +A +GL FQ+ DDILD+ + +GK G D ++KATYP L+ + AK+
Sbjct: 204 RQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGAKEK 263
Query: 236 AEELFSQATKELAYFEVSKAAPLY 259
A + L +V AA Y
Sbjct: 264 LAFHIEAAQRHLRNADVDGAALAY 287
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 169/269 (62%), Gaps = 5/269 (1%)
Query: 3 HP--EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDD 60
HP ++HEA+ YSL AGGKRIRP+L + + + +GG+ +P ALEM HT SLIHDD
Sbjct: 25 HPAQSRLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDD 84
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LPA+DNDD RRGK TNHK F E TAILAGDALL AF+ + ++ + + I L
Sbjct: 85 LPAMDNDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCIL--NTQLNAEIKLSLINLLS 142
Query: 121 SALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIER 180
+A G+ G++ GQ+ D+ E K ++L+ELE IH+HKT +L+ A++V II N +IE+
Sbjct: 143 TASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQ 202
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240
+ + +GL+FQ+ DDILDV S +GKT G DL +DK+TY L+G+E +K+ +
Sbjct: 203 LNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKL 262
Query: 241 SQATKELAYFEVSKAAPLYHLAKYIVSRQ 269
++ L + L L YIV R
Sbjct: 263 TETYDALKTLQPIN-DNLKTLITYIVERN 290
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 170/268 (63%), Gaps = 2/268 (0%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
P+ + ++M YSL AGGKR+RP++ +A G E +P+ CA+EM HT SLIHDDLP
Sbjct: 30 PDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPC 89
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG-VSTDRVVRAITELGSA 122
+D+DDLRRGKPTNHKVFGE TA+LAGD LL +F+ + + VS ++ +R + EL SA
Sbjct: 90 MDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLVNELISA 149
Query: 123 LGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVR 182
G EG++ GQV D+++E + V+L ELE IH KTAKLL V+ G I+ +IE +R
Sbjct: 150 AGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLR 209
Query: 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQ 242
++ IG+ FQ+ DDILD+ S +GK G D +DK+TYP L+ +E AK + +
Sbjct: 210 TFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVHIKE 269
Query: 243 ATKELAYFEVSKAAPLYHLAKYIVSRQN 270
A + + + K LY L I +R +
Sbjct: 270 AKRLIGGLSLQKDL-LYELCDLIAARDH 296
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 169/271 (62%), Gaps = 7/271 (2%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLP 62
H + EAM+Y+LL GGKR+RP L A+ +++G ++ + A A+E H SLIHDDLP
Sbjct: 29 HNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLP 88
Query: 63 ALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSA 122
A+D+D+LRRG PT H F E TAILAGDAL + AFE + KT +ST++ + I L
Sbjct: 89 AMDDDNLRRGHPTCHIQFDEATAILAGDALQSFAFE-ILTKTPNISTEQKLALIQILAQG 147
Query: 123 LGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIG---GGNVIEIE 179
G +G+ GQ DL SE K +SLSELE IH +KT LL A++ G I +E +
Sbjct: 148 AGVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALLIAALKLGFICSPHFTDKRLE-Q 206
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
+ YA IGL FQV DDILD+ S +GK G DL DK+TYPKL+G+ AK+ A++L
Sbjct: 207 SLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDL 266
Query: 240 FSQATKELAYFEVSKAAPLYHLAKYIVSRQN 270
+ A EL ++ + LA++I++R++
Sbjct: 267 YQSALSELE--KIPFDTTVRALAEFIITRKS 295
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/208 (48%), Positives = 134/208 (64%), Gaps = 8/208 (3%)
Query: 1 MQHPEKIHEAMRYSLLA-GGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHD 59
++HP I+EAMRYS+LA G KR PV+C+A+CEL GGD P ACALEM H SLIHD
Sbjct: 68 VKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHD 127
Query: 60 DLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVG--VSTDRVVRAIT 117
DLP +D+D +RRGKP+NH V+G AILAGDAL LAF+H+ + T V ++R IT
Sbjct: 128 DLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLIT 187
Query: 118 ELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIE 177
E+ +G+ G+ GQ DL EG LS ++ K + E S VCG ++GG E
Sbjct: 188 EIARTVGSTGMAAGQYVDL--EGGPFPLS---FVQEKKFGAMGECSAVCGGLLGGATEDE 242
Query: 178 IERVRNYARCIGLLFQVVDDILDVTKSS 205
++ +R Y R +G+L+QVVDDI + K S
Sbjct: 243 LQSLRRYGRAVGMLYQVVDDITEDKKKS 270
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 155/265 (58%), Gaps = 6/265 (2%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
E M+Y L GGKR+RP L A+ + G + + A A+E H SLIHDDLPA+D+DD
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 69 LRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDR-VVRAITELGSALGAEG 127
LRRG PT H FGE AILAGDAL LAF ++ + +DR + I+EL SA G G
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 128 LLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIE-IERVRNYAR 186
+ GQ DLD+EGK V L LE IH HKT L+ A+V G + G + + YA
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS---QA 243
IGL FQV DDILDV + LGK G D K+TYP L+G+E A+K A +L Q+
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 244 TKELAYFEVSKAAPLYHLAKYIVSR 268
K+LA + +A L LA YI+ R
Sbjct: 274 LKQLAEQSLDTSA-LEALADYIIQR 297
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 141/243 (58%), Gaps = 6/243 (2%)
Query: 10 AMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDL 69
AMRY+ L GGKR R +LC+A+ L ++ + A+EM H +L+HDDLPA+D+D L
Sbjct: 65 AMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVL 124
Query: 70 RRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLL 129
RRG PT H FGE TAIL GDAL A AF +A ++ D + + EL A+ AEG
Sbjct: 125 RRGLPTVHVKFGEATAILVGDALQAHAFLTLA--SLNAPGDSPIALVRELAQAVSAEGAA 182
Query: 130 KGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASV----VCGVIIGGGNVIEIERVRNYA 185
GQ DL GK V L + +H K+ L+ ASV +C V + + + +Y+
Sbjct: 183 GGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMGALCAVGVNAAHAALYCALDHYS 242
Query: 186 RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245
C GL QV+DDILDVT + LGKT GKD + K T +MG++ A++FA +L A +
Sbjct: 243 ACFGLALQVIDDILDVTADTAALGKTPGKDAAAQKPTCASIMGLQEARQFALDLLRDAGE 302
Query: 246 ELA 248
+A
Sbjct: 303 AIA 305
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 154/253 (60%), Gaps = 6/253 (2%)
Query: 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDD 68
+AM+YS+ +G KR+R L ++ ++ + + + ++ A+E H+ SLIHDDLP +DND+
Sbjct: 34 KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDN 93
Query: 69 LRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTV-GVSTDRVVRAITELGSALGAEG 127
RRGK + H +GE T++LAGDAL +LAF ++ + VS + ++ I+EL ++G+ G
Sbjct: 94 FRRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPNVSNLKRIKMISELSYSIGSSG 153
Query: 128 LLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRN-YAR 186
+ GQ DL++E KDV+LSELE I+++KT+ L+ ++V I + + ++
Sbjct: 154 MCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSILDLFSI 213
Query: 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246
IGL FQ+ DDILD K S KT K ++ K TYP ++G++ ++K ++L ++
Sbjct: 214 SIGLAFQIQDDILDFKKDSV---KTDNKKIIK-KHTYPLIIGLDESRKKIKQLHKKSFLA 269
Query: 247 LAYFEVSKAAPLY 259
L + + P Y
Sbjct: 270 LNSLKKKISIPTY 282
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 139/243 (57%), Gaps = 6/243 (2%)
Query: 10 AMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDL 69
AMRY+ L GGKR R +LC+A+ L ++ + A+EM H +L+HDDLPA+D+D L
Sbjct: 65 AMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVL 124
Query: 70 RRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLL 129
RRG PT H FGE TAIL GDAL A AF +A ++ D + + EL A+ AEG
Sbjct: 125 RRGLPTVHVKFGEATAILVGDALQAHAFLTLA--SLDAPGDNRIALVRELAQAVSAEGAA 182
Query: 130 KGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASV----VCGVIIGGGNVIEIERVRNYA 185
GQ DL GK V L + +H K L+ ASV +C + + + +Y+
Sbjct: 183 GGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGALCAIAEDAADATLYCALDHYS 242
Query: 186 RCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245
C GL QVVDDILD T + LGKT GKD + K T +MG++ A++FA +L +A +
Sbjct: 243 ACFGLALQVVDDILDATADTATLGKTPGKDAAAQKPTCASIMGLQAARQFALDLLCEAGE 302
Query: 246 ELA 248
+A
Sbjct: 303 AIA 305
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDN 66
+ AM+YS L+GGKR+R L A+ E + + + ++ A+E+ H+ SLIHDDLP +DN
Sbjct: 32 LFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCIDN 91
Query: 67 DDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTV-GVSTDRVVRAITELGSALGA 125
D RRGK + H +GE A+LAGDAL LAF ++ + GV ++ I E +A+G
Sbjct: 92 DYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIRLKMIAEFSNAIGY 151
Query: 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRN-Y 184
G+ GQ+ DL+ E K +++SELE I+++KTA L+ S+ E+ + + +
Sbjct: 152 SGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASNNFSKEVLFILDKF 211
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243
+ IGL FQ+ DDILD+ L K K TYP L+G++ +K +EL+ +A
Sbjct: 212 SVSIGLAFQIQDDILDLKNDIKKLESKRNK----TKNTYPLLIGLKKSKIKIKELYKEA 266
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 154/300 (51%), Gaps = 43/300 (14%)
Query: 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPAL 64
+K++ A ++ L AGGKRIRP L + + L D V+P A A+E+ H +LIHDD+ +
Sbjct: 33 DKLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--M 90
Query: 65 DNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALG 124
DNDD RRGKPT H V+GEP AILAGD L A AFE V+ + ++ + ++ S
Sbjct: 91 DNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSR----IKDNKKAHEVLKILSKAC 146
Query: 125 AEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNY 184
E + +GQ D++ E ++ E + KT LLEASV G ++ N E E ++ Y
Sbjct: 147 VE-VCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEY 205
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYP-----------------KLM 227
A+ IGL FQ+ DD+LD+ LGK G D+ K T +++
Sbjct: 206 AKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEIL 265
Query: 228 GIENAK---------------KFAEELFSQATKE----LAYFEVSKAAPLYHLAKYIVSR 268
G +N K ++A+EL Q T+E L F + L LA +I+SR
Sbjct: 266 GNKNVKDEEIKEAIEILKPSIEYAKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMSR 325
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 136/249 (54%), Gaps = 14/249 (5%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE--SLVMPMACALEMTHTMSLIHD 59
+ P + A+ Y + GG RIRP + + S L GD+ ++ A ALE+ H SL+HD
Sbjct: 22 ESPPLLAAALPYGVFPGGARIRPTILV-SVALACGDDCPAVTDAAAVALELMHCASLVHD 80
Query: 60 DLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITEL 119
DLPA DN D+RRGKP+ HK + EP A+LAGD+LL FE V A V+ DR ++ I++L
Sbjct: 81 DLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFE-VLADVGAVNPDRALKLISKL 139
Query: 120 GSALGAE-GLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEI 178
G GA G+ GQ + +S+ +L H KT L A+ G I G E
Sbjct: 140 GQLSGARGGICAGQAWESESK------VDLAAYHQAKTGALFIAATQMGAIAAG---YEA 190
Query: 179 ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238
E + IG FQ+ DD+ D S+ +GK AG+D+ +++ K MGIE A+K ++
Sbjct: 191 EPWFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDIANERPNAVKTMGIEGARKHLQD 250
Query: 239 LFSQATKEL 247
+ + A +
Sbjct: 251 VLAGAIASI 259
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 137/249 (55%), Gaps = 27/249 (10%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
PE + A + + AGGK+IRP L + S E VGGD +A A+E+ HT SLIHDD+
Sbjct: 28 PETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI-- 85
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHV--------AAKTVGVSTDRVVRA 115
+D+D++RRG+P H ++GEP AILAGD L + AFE V + + V D V+
Sbjct: 86 MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKEALAVVVDSCVK- 144
Query: 116 ITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGG 173
+ +GQ D+ E + + ++E EY+ + KTA L+ A+ G I+GGG
Sbjct: 145 ------------ICEGQALDMGFEER-LDVTEEEYMEMIYKKTAALIAAATKAGAIMGGG 191
Query: 174 NVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENA- 232
+ EI + +Y RCIGL FQ+ DD LDV LGK G D+ K T + +E A
Sbjct: 192 SPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERAS 251
Query: 233 KKFAEELFS 241
+K E L S
Sbjct: 252 EKDRERLIS 260
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
PE++ EAM+Y L GKRIRP+ +A +GG+E + + +E+ H SLIHDDLP
Sbjct: 24 PEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPC 83
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKT--VGVSTDRVVRAITELGS 121
+DND RRG PT H FGE A+LAGDALL FE ++ + +S + ++ +
Sbjct: 84 MDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKTLSCEEILEINKIIAQ 143
Query: 122 ALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERV 181
G+ G++ GQV D+ +L + V KT L EA +CG ++ +++ +
Sbjct: 144 KAGSNGMVGGQVLDIK------GYEDLYEVSVKKTGALFEACFMCGAVVAKRRE-KLKEM 196
Query: 182 RNYARCIGLLFQVVDDILD 200
+ R +GLLFQ+VDD LD
Sbjct: 197 ESIGRKVGLLFQMVDDYLD 215
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 137/233 (58%), Gaps = 10/233 (4%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPA 63
P+ + +A + + AGGK+IRP L + SCE VGG+ +A A+E+ HT SLIHDD+
Sbjct: 28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI-- 85
Query: 64 LDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSAL 123
+D+D++RRG+P+ H ++GEP AILAGD L + AFE V ++RV A+ + +
Sbjct: 86 MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNG---DSERVKDALAVVVDSC 142
Query: 124 GAEGLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERV 181
+ +GQ D+ E + + ++E EY+ + KTA L+ A+ G I+GG + E+E +
Sbjct: 143 VK--ICEGQALDMGFEER-LDVTEDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEAL 199
Query: 182 RNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234
+Y + IGL FQ+ DD LDV LGK G D+ K T + +E A +
Sbjct: 200 EDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEASE 252
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDN 66
+ EA + AGGKR+RP++ ++S +L+GGD A A+E+ H +L+HDD+ +DN
Sbjct: 32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDN 89
Query: 67 DDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAE 126
D LRRG PT H +GEP AILAGD L A AFE + G+ + +A + +++ E
Sbjct: 90 DGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSI--E 147
Query: 127 GLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERVRNY 184
+ +GQ D+ E + + ++E EYI + KTA L S G II N ++++ Y
Sbjct: 148 IISEGQAMDMSFENR-LDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEY 206
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKAT 222
+G+ FQ+VDDIL + LGK D+ K T
Sbjct: 207 GLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKT 244
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 122/219 (55%), Gaps = 7/219 (3%)
Query: 6 KIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65
K++EA + +GGKR+RP++ S +L GG A+E+ HT +L+HDD+ +D
Sbjct: 29 KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MD 86
Query: 66 NDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGA 125
D++RRG PT H +G P AILAGD L A AF+ + G+ ++ +++A ++
Sbjct: 87 QDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKAFDIFTRSIII 146
Query: 126 EGLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERVRN 183
+ +GQ D++ E + + + E EY+ + KTA L AS G +I G N ++ + +
Sbjct: 147 --ISEGQAVDMEFEDR-IDIKEQEYLDMISRKTAALFSASSSIGALIAGANDNDVRLMSD 203
Query: 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKAT 222
+ +G+ FQ+VDDIL +T LGK D+ K T
Sbjct: 204 FGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKT 242
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 124/244 (50%), Gaps = 12/244 (4%)
Query: 2 QHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE-SLVMPMACALEMTHTMSLIHDD 60
+ P K+ A+ Y++ GG RIRP L ++ G D +L A ALE+ H SL+HDD
Sbjct: 22 EAPSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDD 81
Query: 61 LPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELG 120
LP D+ ++RRGKPT H+ + EP AIL GD+L+ + FE V A+ R ++ +T L
Sbjct: 82 LPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFE-VLARAAADQPQRALQLVTALA 140
Query: 121 SALGAE-GLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
G G+ GQ + +S+ ++LS H KT L A+ G I G E E
Sbjct: 141 VRTGMPMGICAGQGWESESQ---INLSAY---HRAKTGALFIAATQMGAIAAG---YEAE 191
Query: 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239
IG FQV DD+ D + LGK AG+D + + + G+E A K +++
Sbjct: 192 PWEELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIHARPNAVREYGVEGAAKRLKDI 251
Query: 240 FSQA 243
A
Sbjct: 252 LGGA 255
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 131/242 (54%), Gaps = 8/242 (3%)
Query: 10 AMRYSLLAGGKRIRPVLCIASCELV--GGDESLVMPMACALEMTHTMSLIHDDLPALDND 67
AMR ++A GKRIRP+L + + + G ++ +ACA+E+THT SL+ DD+P +DN
Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNA 101
Query: 68 DLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEG 127
+LRRG+PT HK FGE AILA LL+ AF +AA T + +R +A+ EL +A+G +G
Sbjct: 102 ELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAA-TGDLPGERRAQAVNELSTAVGVQG 160
Query: 128 LLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARC 187
L+ GQ DL+ D + + + KT L A + I + E + +A
Sbjct: 161 LVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALD 220
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKEL 247
G FQ++DD+ D + GK KD + K+T +G + A++ E A K L
Sbjct: 221 FGQAFQLLDDLRDDHPET---GKDRNKD--AGKSTLVNRLGADAARQKLREHIDSADKHL 275
Query: 248 AY 249
+
Sbjct: 276 TF 277
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 17 AGGKRIRPVLCI----ASCELVGGDESLV--MPMACALEMTHTMSLIHDDLPALDNDDLR 70
AGGKR+RP L A+ EL G E +A +EM HT SLIHDD+ +D+ +R
Sbjct: 120 AGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDV--IDDSGMR 177
Query: 71 RGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
RGK T H+++G A+LAGD + A + +A + V++ I+++ A G +K
Sbjct: 178 RGKETIHQLYGTRVAVLAGDFMFAQSSWFLA----NLENIEVIKLISQVIKDF-ASGEIK 232
Query: 131 GQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGL 190
T D DV+L + +KTA LL +S I G + E++ Y R +GL
Sbjct: 233 QASTLFDC---DVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGL 289
Query: 191 LFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
FQVVDDILD T+S+ LGK AG DL T P + +++ K E
Sbjct: 290 SFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLRE 336
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 138/259 (53%), Gaps = 13/259 (5%)
Query: 10 AMRYSLLAGGKRIRPVLCIASCELVGGDESL--VMPMACALEMTHTMSLIHDDLPALDND 67
AMR LA GKRIRP+L + + +G S ++ +ACA+EM H SLI DD+P +D+
Sbjct: 43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGLLDLACAVEMVHAASLILDDMPCMDDA 102
Query: 68 DLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEG 127
LRRG+PT H +GE AILA ALL+ AF V A G++ RA++EL +A+G +G
Sbjct: 103 KLRRGRPTIHSHYGEHVAILAAVALLSKAFG-VIADADGLTPLAKNRAVSELSNAIGMQG 161
Query: 128 LLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARC 187
L++GQ DL K S + + KT+ L AS+ I+ + + + ++
Sbjct: 162 LVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCLHRFSLD 221
Query: 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKEL 247
+G FQ++DD+ T T GK + +D + K+T L+G + EE Q +L
Sbjct: 222 LGQAFQLLDDL---TDGMTDTGKDSNQD--AGKSTLVNLLG----PRAVEERLRQHL-QL 271
Query: 248 AYFEVSKAAPLYHLAKYIV 266
A +S A H ++ +
Sbjct: 272 ASEHLSAACQHGHATQHFI 290
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 19 GKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHK 78
GK IRP L + E G D +P A ++E+ H SL+HDDL +D D+ RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 79 VFGEPTAILAGDALLALAFE--------HVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
++G+ A+LAGDA+L+LA E HV A +RAI+E L++
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA---------ALRAISE-----ATRELIR 175
Query: 131 GQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIG 189
GQ D E + DV+L E + KTA L+ AS G ++ G E + Y R IG
Sbjct: 176 GQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIG 235
Query: 190 LLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYP 224
L FQ+VDD+L + + GK DL S K T P
Sbjct: 236 LAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLP 270
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 19 GKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHK 78
GK IRP L + E G D +P A ++E+ H SL+HDDL +D D+ RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 79 VFGEPTAILAGDALLALAFE--------HVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
++G+ A+LAGDA+L+LA E HV A +RAI+E L++
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA---------ALRAISE-----ATRELIR 175
Query: 131 GQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIG 189
GQ D E + DV+L E + KTA L+ AS G ++ G E + Y R IG
Sbjct: 176 GQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIG 235
Query: 190 LLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYP 224
L FQ+VDD+L + + GK DL S K T P
Sbjct: 236 LAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLP 270
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 17 AGGKRIRPVLCI----ASCELVGGDESLV--MPMACALEMTHTMSLIHDDLPALDNDDLR 70
AGGKR+RP L A+ EL G E +A +EM HT SLIHDD+ +D+ +R
Sbjct: 89 AGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDV--IDDSGMR 146
Query: 71 RGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
RGK T H+++G A+LAGD + A + +A + V++ I+++ A G +K
Sbjct: 147 RGKETIHQLYGTRVAVLAGDFMFAQSSWFLA----NLENIEVIKLISQVIKDF-ASGEIK 201
Query: 131 GQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGL 190
T D D++L + +KTA L+ AS I G + E++ Y R +GL
Sbjct: 202 QASTLFDC---DITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGL 258
Query: 191 LFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
FQVVDDILD T+S+ LGK AG DL T P + +++ + E
Sbjct: 259 SFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLRE 305
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 1 MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVG----------------GDESLVMPM 44
+Q PE+++ A RY L AGGKR+RP + + + E + GDE V+
Sbjct: 28 VQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPLSADYRQFPSLPGDEVDVLSA 87
Query: 45 ACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKT 104
A ++E+ + +LIHDD+ D+ LRRG P H+ + TAILAGD L + AFE++
Sbjct: 88 AVSIEVIQSFTLIHDDIMDDDD--LRRGVPAVHREYDLETAILAGDTLYSKAFEYML--D 143
Query: 105 VGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEAS 163
G +R V A+ EL + + +GQ D+D E + DV+ E + KTA L A+
Sbjct: 144 TGAPAERSVEALDELATTCTE--ICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLYAAA 201
Query: 164 VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKAT 222
I+ G + +E + Y IG FQ+ DD+LD+T S LGK G DLV +K T
Sbjct: 202 ASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENKRT 260
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 18/246 (7%)
Query: 13 YSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRG 72
Y + GGKRIRP++ + + +G + S + A +E HT SL+HDD+ +D D+RRG
Sbjct: 44 YIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDV--VDESDMRRG 101
Query: 73 KPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQ 132
+ T + FG ++L GD + AF+ VA + + +++ + + + L AEG ++ Q
Sbjct: 102 RATANAEFGNAASVLVGDFIYTRAFQLVAQ----LESLKILSIMADATNVL-AEGEVQ-Q 155
Query: 133 VTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGL 190
+ +++ D SE Y+ V KTA+L E + I+ GG + + +++Y R +G
Sbjct: 156 LMNVN----DPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGT 211
Query: 191 LFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE--NAKKFA--EELFSQATKE 246
FQ+VDD+LD + ++ LGK G DL K T P L + NA++ A E Q K
Sbjct: 212 AFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQGGKR 271
Query: 247 LAYFEV 252
A EV
Sbjct: 272 EAIDEV 277
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 117/227 (51%), Gaps = 16/227 (7%)
Query: 17 AGGKRIRPVLCI----ASCELVGGDESLV--MPMACALEMTHTMSLIHDDLPALDNDDLR 70
AGGKR+RP L A+ EL G E V + +EM HT SLIHDD+ LD D+R
Sbjct: 134 AGGKRMRPGLVFLVSRATAELAGLKELTVEHRRLGEIIEMIHTASLIHDDV--LDESDMR 191
Query: 71 RGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
RG+ T H++FG A+LAGD + A A ++A + V++ I+++ A G +K
Sbjct: 192 RGRETVHELFGTRVAVLAGDFMFAQASWYLA----NLENLEVIKLISQVIKDF-ASGEIK 246
Query: 131 GQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGL 190
+ D DV L + +KTA L+ AS I E++ + + +GL
Sbjct: 247 QASSLFDC---DVKLDDYMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGL 303
Query: 191 LFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
FQVVDDILD T+S+ LGK A DL T P + +EN + E
Sbjct: 304 SFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLRE 350
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 16/227 (7%)
Query: 17 AGGKRIRPVLCI----ASCELVGGDESLV--MPMACALEMTHTMSLIHDDLPALDNDDLR 70
AGGKR+RP L A+ EL G E +A +EM HT SLIHDD+ LD D+R
Sbjct: 123 AGGKRMRPGLVFLVSHATAELAGLKELTTEHRRLAEIIEMIHTASLIHDDV--LDESDMR 180
Query: 71 RGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLK 130
RGK T H++FG A+LAGD + A A ++A + V++ I+++ A G +K
Sbjct: 181 RGKETVHELFGTRVAVLAGDFMFAQASWYLA----NLENLEVIKLISQVIKDF-ASGEIK 235
Query: 131 GQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGL 190
+ D D L E +KTA L+ AS I E++ + + +GL
Sbjct: 236 QASSLFDC---DTKLDEYLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGL 292
Query: 191 LFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237
FQ+VDDILD T+S+ LGK AG DL T P + +E + E
Sbjct: 293 SFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEREPRLRE 339
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 9/235 (3%)
Query: 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLP 62
PE++++A RY + AGGKR+RP + I + E VG + V+P A A+E+ H +LIH
Sbjct: 29 RPEELYKASRYLVDAGGKRLRPAVLILAAEAVGSNLRSVLPAAVAVELVHNFTLIH--DD 86
Query: 63 ALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSA 122
+D DD+RRG P H +GE AILAGD L + AFE ++ V RV++ + L
Sbjct: 87 IMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILS--KVENEPVRVLKCMDVLSKT 144
Query: 123 LGAEGLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIER 180
+ +GQ D+D E + ++E EY+ + KT+ L A+ G ++GG + E
Sbjct: 145 --CTEICEGQWLDMDFETRK-KVTESEYLEMVEKKTSVLYAAAAKIGALLGGASDEVAEA 201
Query: 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235
+ Y R IG+ FQ+ DD+LD+T VLGK G DL+ K T + E K
Sbjct: 202 LSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAFEKGVKL 256
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 10/244 (4%)
Query: 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPAL 64
E I++A + L +GGKR+RP+ + S L + ++ A +LE+ H SL+HDD +
Sbjct: 30 ETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY--I 87
Query: 65 DNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALG 124
DN D+RRG + H F + TAI G LLA A +++A T+ S + + T L G
Sbjct: 88 DNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIA--TINNSKFHQIFSKTILEVCFG 145
Query: 125 AEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNY 184
+ D VS + KTA L+EAS G + + ++ +
Sbjct: 146 EFDQMA------DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQF 199
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244
CIG+ +Q++DDILD T LGK G D+ + TYP + I N K+ ++
Sbjct: 200 GHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVV 259
Query: 245 KELA 248
K L
Sbjct: 260 KHLT 263
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDN 66
I++ Y + GGKRIRP++ + + VG + + + +A +E HT +L+HDD+ +D
Sbjct: 32 INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDE 89
Query: 67 DDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAE 126
D+RRGK T + FG ++L GD + AF+ + + + + +V+ ++E + +
Sbjct: 90 SDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS----LGSLKVLEVMSEAVNVIA-- 143
Query: 127 GLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERVRNY 184
+G+V L D ++E Y+ V KTA+L EA+ C I+ G E + +++Y
Sbjct: 144 ---EGEVLQL-MNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDY 199
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKL 226
R +G FQ++DD+LD LGK G DL K T P L
Sbjct: 200 GRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 7 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDN 66
I++ Y + GGKRIRP++ + + VG + + + +A +E HT +L+HDD+ +D
Sbjct: 32 INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDE 89
Query: 67 DDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAE 126
D+RRGK T + FG ++L GD + AF+ + + + + +V+ ++E + +
Sbjct: 90 SDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS----LGSLKVLEVMSEAVNVIA-- 143
Query: 127 GLLKGQVTDLDSEGKDVSLSELEYIHV--HKTAKLLEASVVCGVIIGGGNVIEIERVRNY 184
+G+V L D ++E Y+ V KTA+L EA+ C I+ G E + +++Y
Sbjct: 144 ---EGEVLQL-MNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDY 199
Query: 185 ARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKL 226
R +G FQ++DD+LD LGK G DL K T P L
Sbjct: 200 GRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 10/236 (4%)
Query: 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGG--DESLVMPMACALEMTHTMSLIHDDL 61
P+++ A + + AGGKR+RP++ + + ++GG E+ +P+A ++E HT SLIHDD+
Sbjct: 15 PDRLSGASLHLIKAGGKRLRPLITLLTARMLGGLEAEARAIPLAASIETAHTFSLIHDDI 74
Query: 62 PALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVA-AKTVGVSTDRVVRAITELG 120
+D D++RRG PT H V+G+ AILAGD L A AF+ +A ++ G+S ++ RA L
Sbjct: 75 --MDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGMSHEQAYRAFKVLS 132
Query: 121 SALGAEGLLKGQVTD-LDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179
A A + +GQ D L E DV +++ + KT L+EA+ G + G EIE
Sbjct: 133 EA--AIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGAVAAGAGS-EIE 189
Query: 180 RVR-NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234
++ G+ FQ+ DDIL V V GK DL K T + ++ A +
Sbjct: 190 KMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKAGR 245
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 16/233 (6%)
Query: 17 AGGKRIRPVLCIASCELVGGDESLV---MPMACALEMTHTMSLIHDDLPALDNDDLRRGK 73
AGGKR+RP + + D+ L +A EM HT SL+HDD+ +D DLRR
Sbjct: 43 AGGKRVRPAIVLLVSRATLLDQELTARHRRLAEITEMIHTASLVHDDV--VDEADLRRNV 100
Query: 74 PTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQV 133
PT + +F A+LAGD L A + ++A + VV+ ++E+ AEG + +
Sbjct: 101 PTVNSLFDNRVAVLAGDFLFAQSSWYLA----NLDNLEVVKLLSEVIRDF-AEGEILQSI 155
Query: 134 TDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQ 193
D++ + E Y KTA L+ S ++ + + Y + +GL FQ
Sbjct: 156 NRFDTDTDLETYLEKSYF---KTASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQ 212
Query: 194 VVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK---KFAEELFSQA 243
+VDDILD T + VLGK AG DL+S T P L +E K E F+QA
Sbjct: 213 IVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAMEKYPLLGKLIEREFAQA 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,698,459
Number of Sequences: 539616
Number of extensions: 3938181
Number of successful extensions: 11488
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 11242
Number of HSP's gapped (non-prelim): 122
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)