Query 024239
Match_columns 270
No_of_seqs 204 out of 1220
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 8.1E-69 1.8E-73 480.6 31.7 267 4-270 29-299 (299)
2 COG0142 IspA Geranylgeranyl py 100.0 1.8E-64 3.8E-69 457.4 29.7 259 3-270 26-322 (322)
3 PRK10888 octaprenyl diphosphat 100.0 3.1E-63 6.7E-68 449.2 29.8 256 4-270 29-323 (323)
4 TIGR02748 GerC3_HepT heptapren 100.0 5.6E-63 1.2E-67 447.5 30.1 256 4-270 28-319 (319)
5 PLN02890 geranyl diphosphate s 100.0 8.6E-63 1.9E-67 456.3 31.2 256 4-270 107-422 (422)
6 TIGR02749 prenyl_cyano solanes 100.0 8.4E-63 1.8E-67 446.4 29.6 256 4-270 29-322 (322)
7 CHL00151 preA prenyl transfera 100.0 1.7E-62 3.7E-67 445.1 28.6 255 5-270 31-323 (323)
8 PLN02857 octaprenyl-diphosphat 100.0 5.9E-62 1.3E-66 450.9 28.0 256 4-270 120-416 (416)
9 cd00685 Trans_IPPS_HT Trans-Is 100.0 2E-60 4.3E-65 419.9 30.2 255 3-268 2-259 (259)
10 KOG0776 Geranylgeranyl pyropho 100.0 1E-60 2.2E-65 429.6 23.6 262 3-268 91-384 (384)
11 PF00348 polyprenyl_synt: Poly 100.0 1.4E-58 3E-63 408.4 22.4 234 9-246 3-236 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 2.6E-44 5.6E-49 312.5 27.7 231 22-268 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 5.6E-39 1.2E-43 268.3 18.0 233 5-252 21-291 (322)
14 KOG0711 Polyprenyl synthetase 100.0 2.8E-38 6E-43 275.3 19.1 219 5-232 38-270 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 2E-21 4.3E-26 166.1 27.5 191 42-252 13-225 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.6 0.0023 5E-08 54.6 14.1 109 37-163 31-140 (212)
17 cd00683 Trans_IPPS_HH Trans-Is 97.3 0.041 9E-07 48.5 17.9 112 126-255 96-229 (265)
18 PLN02632 phytoene synthase 97.2 0.047 1E-06 50.1 17.7 115 126-255 143-281 (334)
19 TIGR03465 HpnD squalene syntha 97.0 0.13 2.9E-06 45.4 19.0 110 126-254 88-219 (266)
20 TIGR01559 squal_synth farnesyl 96.7 0.2 4.4E-06 46.0 17.8 115 127-253 112-249 (336)
21 TIGR03464 HpnC squalene syntha 96.7 0.4 8.6E-06 42.4 19.4 111 126-255 89-221 (266)
22 PF00494 SQS_PSY: Squalene/phy 96.4 0.25 5.3E-06 43.5 15.9 111 126-253 94-228 (267)
23 cd00687 Terpene_cyclase_nonpla 94.8 2.8 6.1E-05 37.4 17.3 108 127-247 140-261 (303)
24 PF03936 Terpene_synth_C: Terp 91.6 3.2 7E-05 36.0 11.5 111 126-248 147-270 (270)
25 cd00868 Terpene_cyclase_C1 Ter 90.5 11 0.00024 32.9 17.6 112 126-250 132-257 (284)
26 TIGR02748 GerC3_HepT heptapren 86.2 9.5 0.00021 34.7 10.7 72 168-251 55-126 (319)
27 PRK10888 octaprenyl diphosphat 86.0 7.1 0.00015 35.6 9.7 72 167-250 55-126 (323)
28 cd00685 Trans_IPPS_HT Trans-Is 85.9 11 0.00024 33.0 10.6 67 172-250 34-101 (259)
29 PF00348 polyprenyl_synt: Poly 83.7 10 0.00022 33.3 9.4 74 166-251 23-96 (260)
30 cd00684 Terpene_cyclase_plant_ 78.0 53 0.0012 32.2 13.1 111 127-250 367-491 (542)
31 COG1562 ERG9 Phytoene/squalene 77.0 56 0.0012 29.4 18.8 111 126-254 106-238 (288)
32 TIGR02749 prenyl_cyano solanes 76.8 25 0.00054 32.0 9.8 63 176-250 67-129 (322)
33 PRK10581 geranyltranstransfera 75.2 38 0.00082 30.5 10.4 71 168-250 56-128 (299)
34 PRK12884 ubiA prenyltransferas 73.2 65 0.0014 28.4 19.3 162 41-235 39-203 (279)
35 PF06783 UPF0239: Uncharacteri 71.2 6 0.00013 28.6 3.4 23 174-196 14-36 (85)
36 PRK13105 ubiA prenyltransferas 71.0 31 0.00066 30.9 8.7 42 188-240 172-213 (282)
37 CHL00151 preA prenyl transfera 70.1 34 0.00074 31.1 9.0 58 180-249 72-129 (323)
38 COG0142 IspA Geranylgeranyl py 70.0 12 0.00026 34.1 6.0 61 180-252 70-130 (322)
39 PLN00012 chlorophyll synthetas 67.8 17 0.00036 34.0 6.5 40 187-237 263-302 (375)
40 TIGR01474 ubiA_proteo 4-hydrox 65.8 98 0.0021 27.5 14.7 60 42-101 43-105 (281)
41 PRK12882 ubiA prenyltransferas 63.9 1E+02 0.0022 27.1 15.9 60 42-101 41-101 (276)
42 PRK07566 bacteriochlorophyll/c 60.9 1.3E+02 0.0028 27.2 14.5 52 46-99 72-126 (314)
43 cd00867 Trans_IPPS Trans-Isopr 57.9 1.2E+02 0.0025 25.7 11.2 38 164-201 6-43 (236)
44 TIGR02056 ChlG chlorophyll syn 55.7 51 0.0011 29.7 7.3 51 45-97 60-113 (306)
45 PRK13105 ubiA prenyltransferas 54.0 61 0.0013 29.0 7.4 60 41-101 162-221 (282)
46 PLN02890 geranyl diphosphate s 53.9 1.2E+02 0.0025 28.9 9.6 59 180-250 165-223 (422)
47 PRK13595 ubiA prenyltransferas 53.6 1.2E+02 0.0026 27.3 9.2 76 160-248 155-230 (292)
48 TIGR01476 chlor_syn_BchG bacte 50.0 47 0.001 29.4 6.1 39 189-238 174-212 (283)
49 PRK12878 ubiA 4-hydroxybenzoat 43.1 2.6E+02 0.0055 25.4 13.1 60 42-101 75-137 (314)
50 PLN02857 octaprenyl-diphosphat 42.9 1.7E+02 0.0036 27.8 8.8 34 30-65 279-312 (416)
51 PRK12875 ubiA prenyltransferas 41.7 86 0.0019 28.0 6.4 40 187-237 176-215 (282)
52 PF10776 DUF2600: Protein of u 41.6 89 0.0019 28.7 6.4 88 164-264 37-146 (330)
53 PRK12872 ubiA prenyltransferas 40.5 2.5E+02 0.0055 24.6 17.9 40 187-237 172-211 (285)
54 PRK12887 ubiA tocopherol phyty 39.4 56 0.0012 29.6 4.9 43 183-236 189-231 (308)
55 COG2096 cob(I)alamin adenosylt 39.4 96 0.0021 26.0 5.8 16 189-204 59-74 (184)
56 PRK12875 ubiA prenyltransferas 39.1 1.1E+02 0.0023 27.4 6.5 39 48-87 174-212 (282)
57 PLN02878 homogentisate phytylt 38.7 1.3E+02 0.0029 26.9 7.0 49 49-98 166-214 (280)
58 cd00686 Terpene_cyclase_cis_tr 37.4 1.3E+02 0.0028 27.9 6.7 63 14-78 55-126 (357)
59 PRK06080 1,4-dihydroxy-2-napht 36.5 1.7E+02 0.0037 25.9 7.6 59 38-97 167-225 (293)
60 PRK12884 ubiA prenyltransferas 36.5 1.4E+02 0.003 26.2 6.9 55 35-90 151-205 (279)
61 KOG0776 Geranylgeranyl pyropho 36.3 2.7E+02 0.0058 26.2 8.8 68 173-250 125-192 (384)
62 PRK13591 ubiA prenyltransferas 35.5 3.4E+02 0.0074 24.6 16.1 38 190-238 193-230 (307)
63 PLN02279 ent-kaur-16-ene synth 35.0 4.8E+02 0.01 27.1 11.2 110 129-250 603-725 (784)
64 PRK07566 bacteriochlorophyll/c 34.3 1.2E+02 0.0026 27.4 6.2 56 40-96 190-245 (314)
65 TIGR01475 ubiA_other putative 34.2 3.3E+02 0.0071 24.0 14.7 51 41-93 38-93 (282)
66 TIGR01476 chlor_syn_BchG bacte 33.0 1.8E+02 0.0039 25.6 7.1 50 42-92 164-213 (283)
67 PF06304 DUF1048: Protein of u 32.0 50 0.0011 24.9 2.8 23 190-212 45-67 (103)
68 TIGR02056 ChlG chlorophyll syn 31.5 2.1E+02 0.0046 25.7 7.4 55 40-95 184-238 (306)
69 PLN02878 homogentisate phytylt 30.2 97 0.0021 27.8 4.7 50 184-244 164-213 (280)
70 PF12029 DUF3516: Domain of un 29.6 1.8E+02 0.0038 27.9 6.5 83 184-266 216-303 (461)
71 PRK12392 bacteriochlorophyll c 28.7 4.6E+02 0.0099 24.0 13.9 46 181-237 185-230 (331)
72 PRK12882 ubiA prenyltransferas 25.5 3.1E+02 0.0067 24.0 7.3 36 53-89 171-206 (276)
73 KOG1345 Serine/threonine kinas 25.4 42 0.0009 30.3 1.5 22 41-62 127-148 (378)
74 PLN02922 prenyltransferase 23.6 3.9E+02 0.0084 24.2 7.6 57 40-97 189-245 (315)
75 PF01040 UbiA: UbiA prenyltran 23.2 4.6E+02 0.0099 22.1 16.9 64 160-234 129-193 (257)
76 PRK05951 ubiA prenyltransferas 22.6 3.9E+02 0.0085 23.8 7.4 47 40-87 172-218 (296)
77 PRK12887 ubiA tocopherol phyty 22.2 1.9E+02 0.004 26.2 5.2 54 42-96 185-238 (308)
78 PRK09573 (S)-2,3-di-O-geranylg 22.0 5.4E+02 0.012 22.5 19.9 59 41-101 39-100 (279)
79 PF01040 UbiA: UbiA prenyltran 21.3 2E+02 0.0044 24.3 5.2 57 30-87 136-193 (257)
80 PF10047 DUF2281: Protein of u 20.7 88 0.0019 21.3 2.2 28 242-269 4-31 (66)
81 PRK07419 1,4-dihydroxy-2-napht 20.7 56 0.0012 29.5 1.5 39 194-243 192-230 (304)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=8.1e-69 Score=480.62 Aligned_cols=267 Identities=45% Similarity=0.670 Sum_probs=244.6
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++++|.+..||||+||.|++++++++|++.+...++|++||++|+||||||||||||+|++|||+||+|.+||++
T Consensus 29 ~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~ 108 (299)
T PRK10581 29 NTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEA 108 (299)
T ss_pred chHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcc
Confidence 56789999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcC-CCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTV-GVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~ 162 (270)
.|||+||+|++.|++.+++... ...+....+++..++++.|..+++.||.+|+.+....++.++|.+|+.+|||+||++
T Consensus 109 ~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~ 188 (299)
T PRK10581 109 NAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRA 188 (299)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCCCCCHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999987532 223445667788887765557899999999988765688999999999999999999
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHH
Q 024239 163 SVVCGVIIGGGNV-IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFS 241 (270)
Q Consensus 163 ~~~~ga~la~~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~ 241 (270)
||.+|++++|.++ +.++.+++||.++|+||||+||++|++++++.+||+.++|+++||+|||++++++++++.++++.+
T Consensus 189 ~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 189 AVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999764 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-C-hHHHHHHHHHHHhccC
Q 024239 242 QATKELAYFEVS-K-AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 242 ~a~~~L~~l~~~-~-~~~L~~l~~~~~~R~~ 270 (270)
+|++.|+.++.. . ++.|.++++|+++|++
T Consensus 269 ~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 269 DARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred HHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 999999999643 3 5789999999999975
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-64 Score=457.39 Aligned_cols=259 Identities=45% Similarity=0.672 Sum_probs=236.1
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChh----hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhh
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDES----LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHK 78 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~----~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~ 78 (270)
.++.+.+++.|.+..||||+||++++++++++|.+.+ .++++|++|||||++||||||| ||+|++|||+||+|.
T Consensus 26 ~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~aaavEliH~~SLiHDDv--mD~s~~RRG~pt~~~ 103 (322)
T COG0142 26 DPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTASLIHDDL--MDDDDLRRGKPTVHA 103 (322)
T ss_pred ccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHHHHHHhhc--ccCCCccCCCCCchh
Confidence 3678999999999999999999999999999985433 5799999999999999999999 999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHH
Q 024239 79 VFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAK 158 (270)
Q Consensus 79 ~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~ 158 (270)
+||+..||++||+|++.||+++++.... ...++..++.++ ..++.||.+|+.+.++.+|+++|.+|+++|||+
T Consensus 104 ~~g~~~AIlaGD~L~~~Af~~l~~~~~~-----~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~ 176 (322)
T COG0142 104 KFGEATAILAGDALLAAAFELLSKLGSE-----ALEAIKALAEAI--NGLCGGQALDLAFENKPVTLEEYLRVIELKTAA 176 (322)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhCCch-----hHHHHHHHHHHH--HHHHHhHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999986431 334455556555 789999999999987779999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHH-----
Q 024239 159 LLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAK----- 233 (270)
Q Consensus 159 lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~----- 233 (270)
||+++|++|+++++++++..+.++.||.++|+||||+||++|++++++.+||+.|+|+++||+|||++++++.+.
T Consensus 177 L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~ 256 (322)
T COG0142 177 LFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANEDQKL 256 (322)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887444
Q ss_pred ----------------------------HHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHhccC
Q 024239 234 ----------------------------KFAEELFSQATKELAYFEV-SKAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 234 ----------------------------~~~~~~~~~a~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 270 (270)
..++.+.++|++.|+.+|. ..++.|.++++++++|.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 257 LRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELADFIIKRKY 322 (322)
T ss_pred HHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhccC
Confidence 4689999999999999974 457899999999999974
No 3
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=3.1e-63 Score=449.20 Aligned_cols=256 Identities=30% Similarity=0.497 Sum_probs=231.9
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.++.+|.+..||||+||.+++++++++|++.+..+++|++||++|++||||||| ||+|++|||+||+|.+||++
T Consensus 29 ~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiHDDI--~D~s~~RRG~pt~~~~~G~~ 106 (323)
T PRK10888 29 VQLINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDV--VDESDMRRGKATANAAFGNA 106 (323)
T ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHccc--ccCCcccCCCCCHHHHhCcc
Confidence 4568899999999999999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
.|||+||||++.+++.++++. ... ++..+++++ ..+++||.+|+.+... .+++++|..++.+|||+||++
T Consensus 107 ~Ail~GD~L~~~a~~~l~~~~----~~~---~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~ 177 (323)
T PRK10888 107 ASVLVGDFIYTRAFQMMTSLG----SLK---VLEVMSEAV--NVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEA 177 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhCC----CHH---HHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998752 223 344555565 6789999999977543 388999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh--------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG-------------- 228 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~-------------- 228 (270)
||.+|++++|++++.++.++.||+++|+||||+||++||+++++.+||+.++|+++||+|||++++
T Consensus 178 ~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~ 257 (323)
T PRK10888 178 AAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRT 257 (323)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHhccC
Q 024239 229 -----------------------IENAKKFAEELFSQATKELAYFEVSK-AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 229 -----------------------l~~a~~~~~~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~R~~ 270 (270)
++++++.++++.++|++.|+.+|+++ ++.|..+++++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 258 AIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR 323 (323)
T ss_pred HHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCcC
Confidence 44567778899999999999997554 6899999999999974
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=5.6e-63 Score=447.48 Aligned_cols=256 Identities=32% Similarity=0.467 Sum_probs=232.6
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEP 83 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~ 83 (270)
++.+.+++.|++..||||+||.|++++++++|++.+.++++|++||+||+|||||||| ||+|++|||+||+|.+||++
T Consensus 28 ~~~l~~~~~~~~~~gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI--~D~s~~RRg~pt~~~~~G~~ 105 (319)
T TIGR02748 28 HPVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVHDDV--IDDADLRRGRPTIKSKWGNR 105 (319)
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccc--cCCCCCCCCCcCHHHHhChH
Confidence 4568899999999999999999999999998888888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHH
Q 024239 84 TAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 84 ~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~ 162 (270)
+|||+||||++++++.++++.. . +++..+++++ ..++.||++|+.+..+ .+++++|..++.+|||+||++
T Consensus 106 ~Ail~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~ 176 (319)
T TIGR02748 106 IAMYTGDYLFAKSLETMTEIKD----P---RAHQILSHTI--VEVCRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAA 176 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987532 2 3344556666 6789999999987543 378999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhH-------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGI------------- 229 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l------------- 229 (270)
||.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.++|+++||+|+|+++++
T Consensus 177 ~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~ 256 (319)
T TIGR02748 177 SCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVL 256 (319)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHhccC
Q 024239 230 ---------------------ENAKKFAEELFSQATKELAYFEVSK-AAPLYHLAKYIVSRQN 270 (270)
Q Consensus 230 ---------------------~~a~~~~~~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~R~~ 270 (270)
++++..++++.++|.+.|+.||++. ++.|.++++++.+|++
T Consensus 257 ~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 257 EETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIGKRKY 319 (319)
T ss_pred cCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 4688889999999999999997544 6889999999999975
No 5
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=8.6e-63 Score=456.27 Aligned_cols=256 Identities=30% Similarity=0.411 Sum_probs=231.9
Q ss_pred chHHHHHHHHhhhCC--CCChHHHHHHHHHHHhCCCh-----------------hhHHHHHHHHHHHHHHHHHHhCCCCC
Q 024239 4 PEKIHEAMRYSLLAG--GKRIRPVLCIASCELVGGDE-----------------SLVMPMACALEMTHTMSLIHDDLPAL 64 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~--GK~lRp~l~l~~~~~~g~~~-----------------~~~~~lA~avElih~asLihDDI~~~ 64 (270)
.+.+.++++|++..| |||+||.+++++++++|.+. +.++++|++||+||+|||||||| |
T Consensus 107 ~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDDI--i 184 (422)
T PLN02890 107 VPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDDV--L 184 (422)
T ss_pred ChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHccc--c
Confidence 457899999999988 99999999999999988642 34789999999999999999999 9
Q ss_pred CCCCCCcCccchhhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CC
Q 024239 65 DNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DV 143 (270)
Q Consensus 65 D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~ 143 (270)
|++++|||+||+|.+||++.||++||||++.|+..++... .. +++..+++++ ..+++||++|+.+..+ .+
T Consensus 185 D~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~----~~---~~~~~~s~a~--~~l~~Gq~ld~~~~~~~~~ 255 (422)
T PLN02890 185 DDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALK----NT---EVVSLLATAV--EHLVTGETMQITSSREQRR 255 (422)
T ss_pred cCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCC----cH---HHHHHHHHHH--HHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999998752 12 3445566666 7899999999988654 38
Q ss_pred CHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcH
Q 024239 144 SLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATY 223 (270)
Q Consensus 144 ~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~ 223 (270)
++++|.+++.+|||+||+.||++|++++|++++..+.+++||+++|+||||+||++||+++++.+||+.++||++||+|+
T Consensus 256 s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~Tl 335 (422)
T PLN02890 256 SMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITA 335 (422)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh---------------------------------hHHHHHHHHHHHHHHHHHHhhccCCCC-------hHHHHHHHH
Q 024239 224 PKLM---------------------------------GIENAKKFAEELFSQATKELAYFEVSK-------AAPLYHLAK 263 (270)
Q Consensus 224 p~i~---------------------------------~l~~a~~~~~~~~~~a~~~L~~l~~~~-------~~~L~~l~~ 263 (270)
|+++ +++++++.+++|.++|.+.|+.||++. ++.|.++++
T Consensus 336 Pvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~ 415 (422)
T PLN02890 336 PILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTE 415 (422)
T ss_pred HHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHH
Confidence 9997 456788999999999999999997553 689999999
Q ss_pred HHHhccC
Q 024239 264 YIVSRQN 270 (270)
Q Consensus 264 ~~~~R~~ 270 (270)
++++|++
T Consensus 416 ~vi~R~k 422 (422)
T PLN02890 416 RVITRNK 422 (422)
T ss_pred HHHhccC
Confidence 9999974
No 6
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=8.4e-63 Score=446.44 Aligned_cols=256 Identities=32% Similarity=0.430 Sum_probs=230.8
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGD---ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVF 80 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~---~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~ 80 (270)
++.+.++++|++..||||+||.+++++++++|+. .+..+++|++||++|+|||||||| ||+|++|||+||+|++|
T Consensus 29 ~~~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--iD~s~~RRG~pt~h~~~ 106 (322)
T TIGR02749 29 HPILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTASLVHDDV--IDESDTRRGIETVHSLF 106 (322)
T ss_pred ChHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHccc--ccCccccCCCccHHHHh
Confidence 4568999999999999999999999999998753 467889999999999999999999 99999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHH
Q 024239 81 GEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKL 159 (270)
Q Consensus 81 G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~l 159 (270)
|++.||++||||++.|++.++.+. ... ++..+++++ ..++.||++|+.+... .+++++|.+++.+|||+|
T Consensus 107 G~~~Ail~GD~l~~~a~~~l~~~~----~~~---~~~~~~~~~--~~~~~Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L 177 (322)
T TIGR02749 107 GTRVAVLAGDFLFAQASWYLANLE----NLE---VVKLISKVI--TDFAEGEIKQGLNQFDSDLSLEDYLEKSFYKTASL 177 (322)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcC----CHH---HHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHccHHHH
Confidence 999999999999999999998752 123 344455555 6789999999876533 378999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh-----------
Q 024239 160 LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG----------- 228 (270)
Q Consensus 160 f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~----------- 228 (270)
|++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+.++||++||+|+|++++
T Consensus 178 ~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l 257 (322)
T TIGR02749 178 VAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEEPKLSELI 257 (322)
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhcChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 229 ----------------------IENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 229 ----------------------l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++++.++++.++|++.|+.+|++ .++.|.++++++.+|++
T Consensus 258 ~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 258 EREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVLSRLY 322 (322)
T ss_pred HhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Confidence 4678888999999999999999654 46889999999999975
No 7
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.7e-62 Score=445.06 Aligned_cols=255 Identities=32% Similarity=0.467 Sum_probs=229.0
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCCh---hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE---SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~---~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
+.+.++++|++..||||+||.+|+++++++|++. ...+.+|++||++|+|||||||| ||+|++|||+||+|.+||
T Consensus 31 ~~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDi--~D~s~~RRG~pt~h~~~G 108 (323)
T CHL00151 31 PILYAAAKHLFSAGGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIHTASLVHDDV--IDECSIRRGIPTVHKIFG 108 (323)
T ss_pred hhHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHccc--ccCccccCCCccHHHHhC
Confidence 4689999999999999999999999999998743 45678999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf 160 (270)
++.|||+||||++.|++.++.... .... ..+++++ ..++.||.+|..+... ..++++|.+++.+|||+||
T Consensus 109 ~~~Ail~GD~l~~~a~~~l~~~~~----~~~~---~~~~~~~--~~l~~G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~ 179 (323)
T CHL00151 109 TKIAVLAGDFLFAQSSWYLANLNN----LEVV---KLISKVI--TDFAEGEIRQGLVQFDTTLSILNYIEKSFYKTASLI 179 (323)
T ss_pred CcchhhhHHHHHHHHHHHHHhCCC----hHHH---HHHHHHH--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHHHH
Confidence 999999999999999999987532 2222 3344454 5678999999776433 3788999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhh------------
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMG------------ 228 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~------------ 228 (270)
++||.+|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.++|+++||+|||++++
T Consensus 180 ~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~ 259 (323)
T CHL00151 180 AASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIE 259 (323)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 229 ---------------------IENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 229 ---------------------l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++++.++++.++|++.|+.||.+ .++.|..+++++++|.|
T Consensus 260 ~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 260 REFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIINRLN 323 (323)
T ss_pred HhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC
Confidence 6778999999999999999999654 46889999999999986
No 8
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=5.9e-62 Score=450.90 Aligned_cols=256 Identities=34% Similarity=0.455 Sum_probs=229.7
Q ss_pred chHHHHHHHHhhhCCCCChHHHHHHHHHHHhCC------ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchh
Q 024239 4 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGG------DESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNH 77 (270)
Q Consensus 4 ~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~------~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~ 77 (270)
++.+.++++|++..||||+||.+++++++++|. ..+..+++|++|||||+|||||||| ||+|++|||+||+|
T Consensus 120 ~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~~~~~~~~~~lAaaiEliH~ASLIHDDI--~D~s~~RRG~pt~h 197 (416)
T PLN02857 120 NPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEMIHTASLIHDDV--LDESDMRRGKETVH 197 (416)
T ss_pred chHHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHHHCcc--ccCCcccCCCCCcc
Confidence 456889999999999999999999999998852 2467899999999999999999999 99999999999999
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhch
Q 024239 78 KVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKT 156 (270)
Q Consensus 78 ~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KT 156 (270)
.+||++.|||+||||+++|++.++++. ...+ +..+++++ ..++.||+.|+.+... .+++++|..++.+||
T Consensus 198 ~~~G~~~AIlaGD~L~a~A~~~la~~~----~~~~---~~~~s~~~--~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KT 268 (416)
T PLN02857 198 QLYGTRVAVLAGDFMFAQSSWYLANLD----NLEV---IKLISQVI--KDFASGEIKQASSLFDCDVTLDEYLLKSYYKT 268 (416)
T ss_pred ccCCcceeeeHHHHHHHHHHHHHHcCC----cHHH---HHHHHHHH--HHHHhhHHHHHhcccCCCCCHHHHHHHHHHhH
Confidence 999999999999999999999998752 2233 34445555 5789999998876533 378999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh---------
Q 024239 157 AKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM--------- 227 (270)
Q Consensus 157 g~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~--------- 227 (270)
|+||+.||++|++++|++++..+.+++||+++|+||||+||++|++++++.+||+.++||.+||+|+|+++
T Consensus 269 a~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~ 348 (416)
T PLN02857 269 ASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKEPELR 348 (416)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHhcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhccC
Q 024239 228 ------------------------GIENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSRQN 270 (270)
Q Consensus 228 ------------------------~l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 270 (270)
++++|++.++++.++|++.|+.||.+ .++.|.++++++++|.+
T Consensus 349 ~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 349 EIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred HHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC
Confidence 56788999999999999999999654 46899999999999974
No 9
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=2e-60 Score=419.94 Aligned_cols=255 Identities=43% Similarity=0.631 Sum_probs=235.7
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE-SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~-~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
.++.+.++++|.+..|||++||.+++++++++|+++ +.+..+|+++|++|+|||||||| ||+|++|||+||+|.+||
T Consensus 2 ~~~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g~~~~~~~~~la~aiEllh~asLIhDDI--~D~s~~RRG~p~~~~~~G 79 (259)
T cd00685 2 EVELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDDV--MDNSDLRRGKPTVHKVFG 79 (259)
T ss_pred CchHHHHHHHHHHHcCCccHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhhh--ccCCcccCCCCcHHHHhC
Confidence 456799999999999999999999999999999988 89999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLL 160 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf 160 (270)
+..|||+||+|++.+++.+++.... ...+++..+++++ ..++.||++|+.+... .+++++|.+++.+|||+||
T Consensus 80 ~~~Ail~gd~l~~~a~~~l~~~~~~----~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~ 153 (259)
T cd00685 80 NATAILAGDYLLARAFELLARLGNP----YYPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALF 153 (259)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCc----cHHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHH
Confidence 9999999999999999999985321 3445666677776 7899999999998754 4889999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH
Q 024239 161 EASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240 (270)
Q Consensus 161 ~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~ 240 (270)
.++|.+|+++++++++.++.+++||.++|++|||+||++|++++++.+||+.++|+++||+|||+++++ ++.++.+.
T Consensus 154 ~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---~~~~~~~~ 230 (259)
T cd00685 154 AAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREYE 230 (259)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred HHHHHHhhccCCCC-hHHHHHHHHHHHhc
Q 024239 241 SQATKELAYFEVSK-AAPLYHLAKYIVSR 268 (270)
Q Consensus 241 ~~a~~~L~~l~~~~-~~~L~~l~~~~~~R 268 (270)
++|++.|+.++++. +..|.++++++.+|
T Consensus 231 ~~a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 231 EKALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 99999999997554 67899999999887
No 10
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-60 Score=429.60 Aligned_cols=262 Identities=52% Similarity=0.748 Sum_probs=235.8
Q ss_pred CchHHHHHHHHhhhCCCCChHHHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcC
Q 024239 3 HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVG-GDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFG 81 (270)
Q Consensus 3 ~~~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g-~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G 81 (270)
+|..+.+.++|.+..+||++||.+|+++|+++| |....++++|+++||||++||||||+||||++++|||+||.|+.||
T Consensus 91 ~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~g~~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG 170 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAGGKRVRPLLCLAACELVGSGDESSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFG 170 (384)
T ss_pred ccchhHHHHHHHHHhcccccCchhhhhHHHhccccccHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhc
Confidence 578899999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHH
Q 024239 82 EPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLE 161 (270)
Q Consensus 82 ~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~ 161 (270)
+++|||+||||++.|++.++.+.+....+.+.+++.++++..+......||.+|... ...++|+.+..+|||+|++
T Consensus 171 ~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~----~~~e~~e~~~~~KTAsLla 246 (384)
T KOG0776|consen 171 NKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGLDLDD----VGLEYLEFKTLLKTASLLA 246 (384)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccccccCC----cchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877655667777777766655444444443333322 5689999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh--------------
Q 024239 162 ASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM-------------- 227 (270)
Q Consensus 162 ~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~-------------- 227 (270)
.+|++|++++|+++++++.+++||+++|++||+.||++|++...+.+||+.+.|+..|+.|+|+++
T Consensus 247 ~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~ 326 (384)
T KOG0776|consen 247 KSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLER 326 (384)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHhc
Q 024239 228 ----------------GIENAKKFAEELFSQATKELAYFEVS-KAAPLYHLAKYIVSR 268 (270)
Q Consensus 228 ----------------~l~~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~R 268 (270)
++..|..+++++.++|+++|+.||++ .+++|++++.++.+|
T Consensus 327 ~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 327 EFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPRSEARSALENLVLAVLTR 384 (384)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhcC
Confidence 44567888999999999999999654 579999999999876
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.4e-58 Score=408.37 Aligned_cols=234 Identities=43% Similarity=0.629 Sum_probs=212.1
Q ss_pred HHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHH
Q 024239 9 EAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILA 88 (270)
Q Consensus 9 ~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~ 88 (270)
+++.|++..||||+||.+++++++++|++++.+.++|++||++|++||||||| ||+|++|||+||+|.+||++.|||+
T Consensus 3 ~~~~~~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI--~D~s~~RRG~pt~~~~~G~~~Ail~ 80 (260)
T PF00348_consen 3 EPARYYILRGGKRIRPLLVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDI--IDNSDLRRGKPTVHKKFGNAIAILA 80 (260)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCccccccccccchhhh
Confidence 67778888999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 024239 89 GDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGV 168 (270)
Q Consensus 89 Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga 168 (270)
||+|++.|++.++++....+......++..+...+ .....||..|+.+.....++++|.+|+++|||+||++||++|+
T Consensus 81 gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga 158 (260)
T PF00348_consen 81 GDYLLALAFELLARLGHFDPSERVLRILELFIEAL--IEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGA 158 (260)
T ss_dssp HHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhc--ccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHH
Confidence 99999999999998642222355666666666555 4567789999988755689999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHH
Q 024239 169 IIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246 (270)
Q Consensus 169 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~ 246 (270)
+++|++++.++.+++||.++|++|||+||++|++++++..||+.++||++||+|||++++++.+.+..+++...+.+.
T Consensus 159 ~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~~~ 236 (260)
T PF00348_consen 159 ILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAYGK 236 (260)
T ss_dssp HHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999888888777766543
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=2.6e-44 Score=312.47 Aligned_cols=231 Identities=38% Similarity=0.548 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhh-cChhHHHHHHHHHHHHHHHHH
Q 024239 22 IRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKV-FGEPTAILAGDALLALAFEHV 100 (270)
Q Consensus 22 lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~-~G~~~Ail~Gd~L~~~a~~~l 100 (270)
+||.+++++++++|++.+.+..+++++|++|++++||||| +|++..|||+|++|.+ ||+..|++.||+++..++..+
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI--~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~l 78 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDI--VDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLL 78 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999 9999999999999999 999999999999999999999
Q ss_pred HcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHH
Q 024239 101 AAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIE 179 (270)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~ 179 (270)
+++. .. +.+..+.+.+ ..++.||.+|+.+..+ ..|+++|..++++|||++|..+|..++++++.+++..+
T Consensus 79 ~~~~----~~---~~~~~~~~~~--~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd00867 79 ARLG----YP---RALELFAEAL--RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAE 149 (236)
T ss_pred HhCC----hH---HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHH
Confidence 8752 12 2334444555 6789999999988652 48899999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccCCC---ChH
Q 024239 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVS---KAA 256 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~~~---~~~ 256 (270)
.+.+||.++|+||||.||++|++++.+.+|| .++|+++||+|||.+++ .+.+.++.+++.+.+..+.+. .+.
T Consensus 150 ~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (236)
T cd00867 150 ALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA----RERAAEYAEEAYAALEALPPSLPRARR 224 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9999999999999999999999999999999 89999999999999998 555666677777777766332 357
Q ss_pred HHHHHHHHHHhc
Q 024239 257 PLYHLAKYIVSR 268 (270)
Q Consensus 257 ~L~~l~~~~~~R 268 (270)
.+..++.++.+|
T Consensus 225 ~~~~~~~~~~~r 236 (236)
T cd00867 225 ALIALADFLYRR 236 (236)
T ss_pred HHHHHHHHHHhC
Confidence 788888888776
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=268.27 Aligned_cols=233 Identities=23% Similarity=0.311 Sum_probs=204.8
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhH
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPT 84 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~ 84 (270)
+.+.+|..|.+..+||.+|.-+.+.+..|+..+.++...+..+|||+|++||+.||| -|+|.+|||.|+.|..||+..
T Consensus 21 ~ill~Py~yilq~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDDI--EDNs~LRRG~pvaHsIyGvpS 98 (322)
T KOG0777|consen 21 SILLKPYNYILQKPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDDI--EDNSPLRRGQPVAHSIYGVPS 98 (322)
T ss_pred HHHhchHHHHHhCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeeccc--cccchhhcCCcchhhhccCcc
Confidence 357799999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC--CCHHHHHHHHhhchHHHHHH
Q 024239 85 AILAGDALLALAFEHVAAKTVGVSTDRVVRAITELGSALGAEGLLKGQVTDLDSEGKD--VSLSELEYIHVHKTAKLLEA 162 (270)
Q Consensus 85 Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~--~~~~~~~~i~~~KTg~lf~~ 162 (270)
.||+++|++..|++.++.+.. +.. +..+.+.+ ..++.||.+|+.|+..- +|++.|..|+..|||-||.+
T Consensus 99 tINtANY~yFlalekV~qLdh----P~a---~kifteqL--leLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~L 169 (322)
T KOG0777|consen 99 TINTANYMYFLALEKVSQLDH----PNA---IKIFTEQL--LELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRL 169 (322)
T ss_pred hhhhhHHHHHHHHHHHHhcCC----chH---HHHHHHHH--HHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHH
Confidence 999999999999999998742 222 33344444 57899999999998654 78999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh---------------
Q 024239 163 SVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM--------------- 227 (270)
Q Consensus 163 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~--------------- 227 (270)
+.++.-.++...+ .+..+-.-+|+.|||+||++++-..+..-.|.+++|+.|||.++|+++
T Consensus 170 a~rLMqlfS~~ke----dl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~IL 245 (322)
T KOG0777|consen 170 ALRLMQLFSHHKE----DLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRIL 245 (322)
T ss_pred HHHHHHHHHhcch----hHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHH
Confidence 9999988875433 477888899999999999999987777788999999999999999998
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHHHhhccCC
Q 024239 228 ---------------------GIENAKKFAEELFSQATKELAYFEV 252 (270)
Q Consensus 228 ---------------------~l~~a~~~~~~~~~~a~~~L~~l~~ 252 (270)
++++++...+++..+|.+.+....+
T Consensus 246 rqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~ 291 (322)
T KOG0777|consen 246 RQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGE 291 (322)
T ss_pred HHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567788888888888888887643
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=275.33 Aligned_cols=219 Identities=25% Similarity=0.322 Sum_probs=186.2
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchh
Q 024239 5 EKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE-------SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNH 77 (270)
Q Consensus 5 ~~l~~~~~y~~~~~GK~lRp~l~l~~~~~~g~~~-------~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~ 77 (270)
+++.+.+.|.. .|||..|++.++.+.+++.++. ..+..++|+||+++++.||.||| ||+|.+|||+||||
T Consensus 38 ~~~~~~L~yN~-~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~vElLQaffLiaDDI--MDnS~tRRGqpCWy 114 (347)
T KOG0711|consen 38 EWLKEVLDYNV-IGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCVELLQAFFLVADDI--MDNSKTRRGQPCWY 114 (347)
T ss_pred HHHHHHHhccC-cccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccccccCCCccee
Confidence 56788899995 8999999999999999987632 35678999999999999999999 99999999999999
Q ss_pred hhcChh-HHHHHHHHHHHHHHHHHHcCcCCCCH-HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC---CCHHHHHHHH
Q 024239 78 KVFGEP-TAILAGDALLALAFEHVAAKTVGVST-DRVVRAITELGSALGAEGLLKGQVTDLDSEGKD---VSLSELEYIH 152 (270)
Q Consensus 78 ~~~G~~-~Ail~Gd~L~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~---~~~~~~~~i~ 152 (270)
.+.|++ .|||.+-+|-+....+|.+...+.+. ....+++.++ . ..+..||.++....+.+ +|++.|..|+
T Consensus 115 ~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev---~--f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv 189 (347)
T KOG0711|consen 115 QKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEV---T--FQTELGDLLTTPEGNKDLSKFSLEKYVFIV 189 (347)
T ss_pred ecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHH---H--HHHhhhccccCcccchhHhhhhHHHHHHHh
Confidence 999995 79999988777777777765444332 3344444443 3 56788987776554433 7899999999
Q ss_pred hhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHH
Q 024239 153 VHKTAKL-LEASVVCGVIIGG-GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIE 230 (270)
Q Consensus 153 ~~KTg~l-f~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~ 230 (270)
.+|||.+ |.+|..+|..++| .+.+.......+...+|..||+|||++|++||++.+||. |+||.++||||.++.+++
T Consensus 190 ~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgki-GtDIqDnKCsWlv~~al~ 268 (347)
T KOG0711|consen 190 EYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGKI-GTDIQDNKCSWLVVKALQ 268 (347)
T ss_pred hccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCCC-CCccccCceeeehHHHHh
Confidence 9999999 9999999999998 567778889999999999999999999999999999998 999999999999998777
Q ss_pred HH
Q 024239 231 NA 232 (270)
Q Consensus 231 ~a 232 (270)
++
T Consensus 269 ~~ 270 (347)
T KOG0711|consen 269 RA 270 (347)
T ss_pred hc
Confidence 65
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.91 E-value=2e-21 Score=166.06 Aligned_cols=191 Identities=37% Similarity=0.472 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhh---cChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKV---FGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAITE 118 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~---~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 118 (270)
..++.++|.+|+++++|||| +|++..||+.|+++.. +|...+++.|+.++..+++.+..... ......
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 83 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDI--VDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGS-------PEALEI 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhc--ccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCC-------HHHHHH
Confidence 57899999999999999999 9999999999999998 99999999999999999999987422 223344
Q ss_pred HHHHhchhhhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024239 119 LGSALGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDD 197 (270)
Q Consensus 119 ~~~~~g~~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD 197 (270)
+.+.+ ..++.||..|+.+... .++.++|..+.+.|||.++...|..++...+.+....+.+..++.++|.++|+.||
T Consensus 84 ~~~~~--~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nD 161 (243)
T cd00385 84 LAEAL--LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTND 161 (243)
T ss_pred HHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455 6789999999988643 37899999999999999999999999888877777788899999999999999999
Q ss_pred hhhhcccccccCCCccchhhhCCCcHHHHhh------------------HHHHHHHHHHHHHHHHHHhhccCC
Q 024239 198 ILDVTKSSTVLGKTAGKDLVSDKATYPKLMG------------------IENAKKFAEELFSQATKELAYFEV 252 (270)
Q Consensus 198 ~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~------------------l~~a~~~~~~~~~~a~~~L~~l~~ 252 (270)
+.|+..+.... +|++|+|.++. ++.+.+.+..+.+++++.+..+..
T Consensus 162 l~~~~~e~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (243)
T cd00385 162 LLDYEGDAERG---------EGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELIL 225 (243)
T ss_pred HHhccCCHHHh---------CCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99997664321 47899998874 456667777778888888877743
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.64 E-value=0.0023 Score=54.62 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHH
Q 024239 37 DESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAI 116 (270)
Q Consensus 37 ~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~ 116 (270)
.++.....+.++-++|+|...||.| |++..+++...-. ....||+|||.-+.-+.+|+.... +.++
T Consensus 31 ~~~~~~~~~~a~~LVq~aLDtHd~V---~~~~~~~~~~~k~----RQLtVLAGDy~S~~yY~lLA~~~~-------i~li 96 (212)
T PF07307_consen 31 SEEEAERYALATMLVQIALDTHDEV---DNAGDESEESSKE----RQLTVLAGDYYSGLYYQLLAESGD-------ISLI 96 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccHHHHh----hhhhhhhHHHHHHHHHHHHHhCCC-------HHHH
Confidence 5677888999999999999999998 6644433333222 246999999999999999998632 3455
Q ss_pred HHHHHHhchhhhHHHHHHHhhcCCCCCCHHHH-HHHHhhchHHHHHHH
Q 024239 117 TELGSALGAEGLLKGQVTDLDSEGKDVSLSEL-EYIHVHKTAKLLEAS 163 (270)
Q Consensus 117 ~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~-~~i~~~KTg~lf~~~ 163 (270)
..++.++ ..+.+... .+.... ..+.++| ..+..-+|+.+..++
T Consensus 97 ~~ls~aI--~eiNE~K~-~ly~~~-~~~~e~~~~~~~~ies~l~~~~~ 140 (212)
T PF07307_consen 97 RALSEAI--KEINELKM-SLYQKK-KETAEEYLESVVTIESALFQSFA 140 (212)
T ss_pred HHHHHHH--HHHHHHHH-HHHHhh-hCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 44555443 222221 2355554 444445555554443
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=97.25 E-value=0.041 Score=48.54 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=75.7
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... ..|.++++..+..-.|+...+++.+ ++.... +....++.++|.|+|+.|=+.|+
T Consensus 96 ~~li~g~~~Dl~~~~-~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv---- 164 (265)
T cd00683 96 RDLLAGMAMDLDKRR-YETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV---- 164 (265)
T ss_pred HHHHHHHHHhCCCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH----
Confidence 456788888887532 2577887777766666666655543 232112 24668899999999999988888
Q ss_pred cccCCCccchhhhCCCcHHH----------------------HhhHHHHHHHHHHHHHHHHHHhhccCCCCh
Q 024239 206 TVLGKTAGKDLVSDKATYPK----------------------LMGIENAKKFAEELFSQATKELAYFEVSKA 255 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~----------------------i~~l~~a~~~~~~~~~~a~~~L~~l~~~~~ 255 (270)
+.|+..|++.+|. .-.++.-...++.++..|...+..+|+...
T Consensus 165 -------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 229 (265)
T cd00683 165 -------GEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229 (265)
T ss_pred -------HHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhH
Confidence 4455555555553 224555566788889999999998875443
No 18
>PLN02632 phytoene synthase
Probab=97.16 E-value=0.047 Score=50.06 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=76.4
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGN--VIEIERVRNYARCIGLLFQVVDDILDVTK 203 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 203 (270)
..++.|...|+.... ..|.++++.-+..-.|.+..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.|+
T Consensus 143 ~~li~g~~~Dl~~~~-~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv-- 216 (334)
T PLN02632 143 RDMIEGMRMDLVKSR-YENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRDV-- 216 (334)
T ss_pred HHHHHHHHHHhccCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356788888886532 2577777776656666666665554 23222 222345678899999999999988888
Q ss_pred cccccCCCccchhhhCCCcHHHH----------------------hhHHHHHHHHHHHHHHHHHHhhccCCCCh
Q 024239 204 SSTVLGKTAGKDLVSDKATYPKL----------------------MGIENAKKFAEELFSQATKELAYFEVSKA 255 (270)
Q Consensus 204 ~~~~~gK~~~~Dl~~gk~T~p~i----------------------~~l~~a~~~~~~~~~~a~~~L~~l~~~~~ 255 (270)
+.|+..|++-+|.= -.++.-...++.++++|...+..+|+..+
T Consensus 217 ---------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 217 ---------GEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred ---------HHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 45666666666631 12333346788889999999988876443
No 19
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=97.05 E-value=0.13 Score=45.42 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... ..|.++++.-+..-.|++..+.+.+ ++..+ +.....+.++|.|+|+.|=+.|+
T Consensus 88 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~----~~~~~~a~~lG~AlqltnilRdv---- 155 (266)
T TIGR03465 88 LEVIDGMEMDLEQTR-YPDFAELDLYCDRVAGAVGRLSARI---FGATD----ARTLEYAHHLGRALQLTNILRDV---- 155 (266)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC----hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 456788888886542 3678888777766666666666554 33332 23578899999999999988887
Q ss_pred cccCCCccchhhhCCCcHHHHh----------------------hHHHHHHHHHHHHHHHHHHhhccCCCC
Q 024239 206 TVLGKTAGKDLVSDKATYPKLM----------------------GIENAKKFAEELFSQATKELAYFEVSK 254 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~i~----------------------~l~~a~~~~~~~~~~a~~~L~~l~~~~ 254 (270)
+.|+..|++.+|.=. .++.--..++.++++|.+.+..+|+..
T Consensus 156 -------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~ 219 (266)
T TIGR03465 156 -------GEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRA 219 (266)
T ss_pred -------HHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhh
Confidence 456666777776421 334445567788888888888876533
No 20
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.73 E-value=0.2 Score=45.95 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=70.1
Q ss_pred hhHHHHHHHhhcCCC-CCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 127 GLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 127 ~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
.|..|...|+..... ..|.+++..-+.+=-|..=.+.+.+-+. +|...+.......++..+|+|+|+.|=+.|+
T Consensus 112 ~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQlTNIlRDv---- 186 (336)
T TIGR01559 112 RMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQKTNIIRDY---- 186 (336)
T ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHH----
Confidence 456788777754321 1577776655544444433333333222 2211111223468899999999999988888
Q ss_pred cccCCCccchhhhCCCcHHHH----------------------hhHHHHHHHHHHHHHHHHHHhhccCCC
Q 024239 206 TVLGKTAGKDLVSDKATYPKL----------------------MGIENAKKFAEELFSQATKELAYFEVS 253 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~i----------------------~~l~~a~~~~~~~~~~a~~~L~~l~~~ 253 (270)
++|+.+|++=||.= ..++.-...+..+++.|...+..++..
T Consensus 187 -------~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~yl~~l~~~ 249 (336)
T TIGR01559 187 -------LEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTYLSRLRDQ 249 (336)
T ss_pred -------HhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666666666642 234455566788888899999888443
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.70 E-value=0.4 Score=42.44 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=73.1
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... ..|.++++.-+.+-.|+...+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 89 ~~li~~~~~Dl~~~~-~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl---- 156 (266)
T TIGR03464 89 LDLLDAFRQDVVVTR-YATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV---- 156 (266)
T ss_pred HHHHHHHHHhccCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh----
Confidence 345778888886542 2578887777656666666665543 3333332 346789999999999988887
Q ss_pred cccCCCccchhhhCCCcHHHH----------------------hhHHHHHHHHHHHHHHHHHHhhccCCCCh
Q 024239 206 TVLGKTAGKDLVSDKATYPKL----------------------MGIENAKKFAEELFSQATKELAYFEVSKA 255 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~i----------------------~~l~~a~~~~~~~~~~a~~~L~~l~~~~~ 255 (270)
+.|+..|++.+|.= -.++.-...++.++..|...+..+|....
T Consensus 157 -------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 221 (266)
T TIGR03464 157 -------GVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRLG 221 (266)
T ss_pred -------HHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhh
Confidence 44555566655531 23444556678888999988888865443
No 22
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.42 E-value=0.25 Score=43.49 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=72.0
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|...|+.... ..|.+++..-+..-+|++..+.+.+...- .+. ......+.++|.++|+.|=+.|+
T Consensus 94 ~~li~~~~~dl~~~~-~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~---- 163 (267)
T PF00494_consen 94 LELIDGMEMDLEFTP-YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI---- 163 (267)
T ss_dssp HHHHHHHHHCTT-S---SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHhcccccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 456778888887543 25888888877788888877765554221 122 45788899999999999988887
Q ss_pred cccCCCccch-hhhCCCcHHHHh-----------------------hHHHHHHHHHHHHHHHHHHhhccCCC
Q 024239 206 TVLGKTAGKD-LVSDKATYPKLM-----------------------GIENAKKFAEELFSQATKELAYFEVS 253 (270)
Q Consensus 206 ~~~gK~~~~D-l~~gk~T~p~i~-----------------------~l~~a~~~~~~~~~~a~~~L~~l~~~ 253 (270)
+.| +..|++-+|.=. .+..-...++.++++|.+.+..+++.
T Consensus 164 -------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 164 -------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp -------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred -------HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 456 566666666321 23444556778888888888888433
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=94.80 E-value=2.8 Score=37.38 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=59.9
Q ss_pred hhHHHHHHHhhcCCC--CCCHHHHHHHHhhch-HHHHHHHHHHHHHhcC--CCHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 024239 127 GLLKGQVTDLDSEGK--DVSLSELEYIHVHKT-AKLLEASVVCGVIIGG--GNVIEI--ERVRNYARCIGLLFQVVDDIL 199 (270)
Q Consensus 127 ~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KT-g~lf~~~~~~ga~la~--~~~~~~--~~l~~~g~~lG~afQi~DD~l 199 (270)
..+.|+..+..+... .+|.++|..+. ..| |..+.+. ++-...| .++... ..+..+-...+...-+.||+.
T Consensus 140 ~~~~a~~~e~~~~~~~~~psl~eYl~~R-~~~~g~~~~~~--l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~ 216 (303)
T cd00687 140 DYFDAYIWEGKNRLNGHVPDVAEYLEMR-RFNIGADPCLG--LSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIY 216 (303)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHh-hhcccccccHH--HHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 445666666544322 37899998875 455 4433222 1212222 233332 247778888899999999999
Q ss_pred hhcccccccCCCccchhhhCC-CcHHHHh------hHHHHHHHHHHHHHHHHHHh
Q 024239 200 DVTKSSTVLGKTAGKDLVSDK-ATYPKLM------GIENAKKFAEELFSQATKEL 247 (270)
Q Consensus 200 d~~~~~~~~gK~~~~Dl~~gk-~T~p~i~------~l~~a~~~~~~~~~~a~~~L 247 (270)
.|..+.. ..|. .++..++ ..+.|.+.+.++.+++.+.+
T Consensus 217 S~~KE~~----------~~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~~~f 261 (303)
T cd00687 217 SYEKEIK----------ANGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERITQF 261 (303)
T ss_pred hhHHHHH----------hCCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 8853321 2233 4555444 34556555555555554444
No 24
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=91.63 E-value=3.2 Score=36.00 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhhcCCC--CCCHHHHHHHHhhchHHHHHHHHHHHHHhcCC-CH---HHHHHHHHHHHHHHHHHHHHHhhh
Q 024239 126 EGLLKGQVTDLDSEGK--DVSLSELEYIHVHKTAKLLEASVVCGVIIGGG-NV---IEIERVRNYARCIGLLFQVVDDIL 199 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~-~~---~~~~~l~~~g~~lG~afQi~DD~l 199 (270)
...+.|...+..+... .+|.++|..+.+.-+|..+.+.+.. ..++.. ++ +.+..-..+-...+..--+.||+.
T Consensus 147 ~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~ 225 (270)
T PF03936_consen 147 REYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIE-FALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLY 225 (270)
T ss_dssp HHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHH-HHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHH-HhCCCccccccHHHHHhchHHHHHHHHHHHHhcccc
Confidence 3445555555544322 3789999888654444443333221 111211 11 112221225555666666679999
Q ss_pred hhcccccccCCCccchhhhCCC-cHHHHh------hHHHHHHHHHHHHHHHHHHhh
Q 024239 200 DVTKSSTVLGKTAGKDLVSDKA-TYPKLM------GIENAKKFAEELFSQATKELA 248 (270)
Q Consensus 200 d~~~~~~~~gK~~~~Dl~~gk~-T~p~i~------~l~~a~~~~~~~~~~a~~~L~ 248 (270)
.+-. ++.+|.. ++..++ .++.|.+.+.+.++++.+.++
T Consensus 226 S~~K-----------E~~~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 226 SYKK-----------EIARGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHH-----------HHHTTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-----------chhhcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 8842 3344444 333332 567777777777777776653
No 25
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=90.53 E-value=11 Score=32.86 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=65.3
Q ss_pred hhhHHHHHHHhhcCC--CCCCHHHHHHHHhhchHHH-HHHHH-HHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHhh
Q 024239 126 EGLLKGQVTDLDSEG--KDVSLSELEYIHVHKTAKL-LEASV-VCGVIIGGGNV---IEIERVRNYARCIGLLFQVVDDI 198 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-f~~~~-~~ga~la~~~~---~~~~~l~~~g~~lG~afQi~DD~ 198 (270)
...+.+...+..+.. ..++.++|..+. ..|+.. +.+.+ ..+.-. ..++ .....+..+....+..--+.||+
T Consensus 132 ~~~~~~~~~e~~~~~~~~~p~~~eYl~~R-~~~~g~~~~~~l~~~~~g~-~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl 209 (284)
T cd00868 132 KDLLRAYLVEAKWANEGYVPSFEEYLENR-RVSIGYPPLLALSFLGMGD-ILPEEAFEWLPSYPKLVRASSTIGRLLNDI 209 (284)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHhc-eehhhHHHHHHHHHHHcCC-CCCHHHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 344556666655532 237889988875 455433 32222 211111 1233 34556788888888888899999
Q ss_pred hhhcccccccCCCccchhhhCC-CcHHHHh------hHHHHHHHHHHHHHHHHHHhhcc
Q 024239 199 LDVTKSSTVLGKTAGKDLVSDK-ATYPKLM------GIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 199 ld~~~~~~~~gK~~~~Dl~~gk-~T~p~i~------~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
..+..+. ..|. .++..++ ..+.|.+.+.+.++++.+.+..+
T Consensus 210 ~S~~kE~-----------~~g~~~N~v~vl~~~~~~~~~eA~~~~~~~~~~~~~~~~~~ 257 (284)
T cd00868 210 ASYEKEI-----------ARGEVANSVECYMKEYGVSEEEALEELRKMIEEAWKELNEE 257 (284)
T ss_pred hHHHHHH-----------ccCCcccHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8884332 2232 3666555 46667777777777777666543
No 26
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=86.21 E-value=9.5 Score=34.66 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=50.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHh
Q 024239 168 VIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKEL 247 (270)
Q Consensus 168 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L 247 (270)
+.+++.+.+....+...-+-+=.|.-|.||+.| .++++.|++|....++...|.-.-.-++..|.+.+
T Consensus 55 ~~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l 122 (319)
T TIGR02748 55 GKFGDYDLDAIKHVAVALELIHMASLVHDDVID------------DADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETM 122 (319)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhccccC------------CCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 344455555555566677778888899999976 35678888888888877777666666777777776
Q ss_pred hccC
Q 024239 248 AYFE 251 (270)
Q Consensus 248 ~~l~ 251 (270)
..++
T Consensus 123 ~~~~ 126 (319)
T TIGR02748 123 TEIK 126 (319)
T ss_pred HhCC
Confidence 6553
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=85.99 E-value=7.1 Score=35.62 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHH
Q 024239 167 GVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKE 246 (270)
Q Consensus 167 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~ 246 (270)
++.+.|.+.+....+...-+-+=.+..|.||+.| .++++.|++|+-..++-..|.-.-.-++..|.+.
T Consensus 55 ~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~ 122 (323)
T PRK10888 55 AARAVGYQGNAHVTIAALIEFIHTATLLHDDVVD------------ESDMRRGKATANAAFGNAASVLVGDFIYTRAFQM 122 (323)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHccccc------------CCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3344454555555566677778888999999976 4567888888877776555554445555555555
Q ss_pred hhcc
Q 024239 247 LAYF 250 (270)
Q Consensus 247 L~~l 250 (270)
+..+
T Consensus 123 l~~~ 126 (323)
T PRK10888 123 MTSL 126 (323)
T ss_pred HHhC
Confidence 5443
No 28
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=85.86 E-value=11 Score=33.02 Aligned_cols=67 Identities=27% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 172 GGNV-IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 172 ~~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
|.++ +....+...-+-+=.++-|.||+.| .++.+.|++|+-..++...|--...-+...|.+.|...
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D------------~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~ 101 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMD------------NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARL 101 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhcc------------CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhC
Confidence 3344 5555677777788889999999966 34567788888887877766666667777777777655
No 29
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=83.71 E-value=10 Score=33.26 Aligned_cols=74 Identities=24% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 166 CGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 166 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+.+.+.+.+.+....+...-+-+=.++-|.||+.| .++++.|++|.-..++...|.-...-++..|.+
T Consensus 23 ~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~ 90 (260)
T PF00348_consen 23 LAAEALGGDPEKAIPLAAAVELIHAASLIHDDIID------------NSDLRRGKPTVHKKFGNAIAILAGDYLLALAFE 90 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhc------------ccccCCCCccccccccccchhhhchHHHHHHHH
Confidence 34444455666677788888888899999999976 356788899888888888888777888888888
Q ss_pred HhhccC
Q 024239 246 ELAYFE 251 (270)
Q Consensus 246 ~L~~l~ 251 (270)
.+..++
T Consensus 91 ~l~~~~ 96 (260)
T PF00348_consen 91 LLARLG 96 (260)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 777664
No 30
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=77.99 E-value=53 Score=32.17 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred hhHHHHHHHhhcCCCC--CCHHHHHHHHhhchHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 024239 127 GLLKGQVTDLDSEGKD--VSLSELEYIHVHKTAKLL-EASVVCGVIIGG-GNVIEIERV---RNYARCIGLLFQVVDDIL 199 (270)
Q Consensus 127 ~~~~GQ~~d~~~~~~~--~~~~~~~~i~~~KTg~lf-~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~l 199 (270)
..+.+-..+..|.... +|.++|......-+|... ...+..| ++. .+++..+-+ .++....+....+.||+.
T Consensus 367 ~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~ 444 (542)
T cd00684 367 DLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVRASSTIGRLMNDIA 444 (542)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChh
Confidence 3445555566554332 789999887644333332 2222222 221 345555433 367778889999999998
Q ss_pred hhcccccccCCCccchhhhCC-CcHHHHh------hHHHHHHHHHHHHHHHHHHhhcc
Q 024239 200 DVTKSSTVLGKTAGKDLVSDK-ATYPKLM------GIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 200 d~~~~~~~~gK~~~~Dl~~gk-~T~p~i~------~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
.+-.. ...|. ++...++ ..+.|.+.+.+.++.+.+.+++.
T Consensus 445 S~~kE-----------~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e 491 (542)
T cd00684 445 TYEDE-----------MKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEE 491 (542)
T ss_pred hhHHH-----------HhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88432 22343 4565555 36778888889999999888753
No 31
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=76.95 E-value=56 Score=29.36 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=68.7
Q ss_pred hhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024239 126 EGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSS 205 (270)
Q Consensus 126 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 205 (270)
..++.|+..|+..... .+.++++.-+ +-||..... .+..+++-.+ ..........+|.|+|+.|=+.|+
T Consensus 106 ~~~~da~~~Dl~~~~y-~~~~eL~~Yc-~~vAg~vG~--l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRdv---- 174 (288)
T COG1562 106 PALIDAMRMDLDRTRY-LDFEELEEYC-YGVAGAVGL--LLARILGPDK---DAATRAYARGLGLALQLVNILRDV---- 174 (288)
T ss_pred HHHHHHHHHHhhhccc-cCHHHHHHHH-HHhHHHHHH--HHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHHh----
Confidence 3567788888876432 3466665544 344443322 1333444322 223445555599999999988888
Q ss_pred cccCCCccchhhhCCCcHHHH----------------------hhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 024239 206 TVLGKTAGKDLVSDKATYPKL----------------------MGIENAKKFAEELFSQATKELAYFEVSK 254 (270)
Q Consensus 206 ~~~gK~~~~Dl~~gk~T~p~i----------------------~~l~~a~~~~~~~~~~a~~~L~~l~~~~ 254 (270)
+.|..+|++-+|.= -.+++-...++.+...|...+..+|...
T Consensus 175 -------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~ 238 (288)
T COG1562 175 -------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRA 238 (288)
T ss_pred -------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCccc
Confidence 67777888777731 1334445567888888888888886543
No 32
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=76.77 E-value=25 Score=32.00 Aligned_cols=63 Identities=27% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 176 IEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 176 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+....+...-+-+=.+.-|.||+.| .++++.|++|+-..++...|.-.-.-++..|.+.+..+
T Consensus 67 ~~~~~~A~avEliH~asLiHDDiiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~ 129 (322)
T TIGR02749 67 PRHRRLAEITEMIHTASLVHDDVID------------ESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANL 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3334456666777788899999976 45778889898888877666666666666666666554
No 33
>PRK10581 geranyltranstransferase; Provisional
Probab=75.19 E-value=38 Score=30.51 Aligned_cols=71 Identities=21% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHH
Q 024239 168 VIIGGGNVIEIERVRNYARCIGLLFQVVDDI--LDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATK 245 (270)
Q Consensus 168 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~ 245 (270)
+.+.|.+++....+...-+-+=.+.-|.||+ .| .+|++.|++|+-..++-..|.-.-.-++..|.+
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 123 (299)
T PRK10581 56 GQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccccc------------CCCccCCCcChHHHhCcchHHHHHHHHHHHHHH
Confidence 3344445555555666667777888999999 66 467888999998888777666666666677777
Q ss_pred Hhhcc
Q 024239 246 ELAYF 250 (270)
Q Consensus 246 ~L~~l 250 (270)
.+...
T Consensus 124 ~l~~~ 128 (299)
T PRK10581 124 ILSDA 128 (299)
T ss_pred HHHhC
Confidence 66544
No 34
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=73.21 E-value=65 Score=28.36 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCC---CcCccchhhhcChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Q 024239 41 VMPMACALEMTHTMSLIHDDLPALDNDDL---RRGKPTNHKVFGEPTAILAGDALLALAFEHVAAKTVGVSTDRVVRAIT 117 (270)
Q Consensus 41 ~~~lA~avElih~asLihDDI~~~D~~~~---RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~ 117 (270)
..-...++=++|.+.-+..|+ .|-+.- |..+|....+...+.|...+-.+...++-...-+ +... -.+.
T Consensus 39 ~~l~~l~~~l~~~a~~~~Nd~--~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l----~~~~--~~~~ 110 (279)
T PRK12884 39 ALLGFLTAFFASGSANALNDY--FDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI----SPLA--FLVV 110 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----hHHH--HHHH
Confidence 344556677999999999999 555432 5566666655566777766655555554333322 1111 1111
Q ss_pred HHHHHhchhhhHHHHHHHhhcCCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024239 118 ELGSALGAEGLLKGQVTDLDSEGKDVSLSELEYIHVHKTAKLLEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDD 197 (270)
Q Consensus 118 ~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD 197 (270)
.++ ...+=..-...+. .+. +..+. .|..+..+...|....+......=.+.-+.--..+.+++..|
T Consensus 111 ~~~-------~~~~~~Ys~~lK~--~~~--~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (279)
T PRK12884 111 ILV-------SVLGILYNWKLKE--YGL--IGNLY---VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKD 176 (279)
T ss_pred HHH-------HHHHHHHHHhhcc--ccc--hhHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111111111 111 01111 223344555555554443222221233344455566788888
Q ss_pred hhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHH
Q 024239 198 ILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKF 235 (270)
Q Consensus 198 ~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~ 235 (270)
+.|.. .|.+.|+.|+|+.++.+.+...
T Consensus 177 ~~D~e-----------~D~~~G~~Tl~v~~G~~~~~~~ 203 (279)
T PRK12884 177 IEDVE-----------GDRLRGARTLAILYGEKIAGRI 203 (279)
T ss_pred hhhhh-----------hHHHcCCeeechHhcHHHHHHH
Confidence 88874 5677899999999987776544
No 35
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=71.16 E-value=6 Score=28.65 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 024239 174 NVIEIERVRNYARCIGLLFQVVD 196 (270)
Q Consensus 174 ~~~~~~~l~~~g~~lG~afQi~D 196 (270)
.+...+.+-+||..+|-+||+.=
T Consensus 14 Eet~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999974
No 36
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=70.99 E-value=31 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHH
Q 024239 188 IGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELF 240 (270)
Q Consensus 188 lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~ 240 (270)
...++.+.+++.|+.+ |-++||.|+|+.+|.+.+...+.-..
T Consensus 172 ~~~a~~ii~~irDie~-----------Dr~~G~~Tlpv~lG~~~a~~~~~~l~ 213 (282)
T PRK13105 172 WGMASHAFGAVQDVVA-----------DREAGIASIATVLGARRTVRLAVGLY 213 (282)
T ss_pred HHHHHHHHHhCcchHh-----------HHHcCCccchHHhcHHHHHHHHHHHH
Confidence 3668999999999854 56789999999999888876655433
No 37
>CHL00151 preA prenyl transferase; Reviewed
Probab=70.06 E-value=34 Score=31.12 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 024239 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAY 249 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~ 249 (270)
.+...-+-+=.+.-|.||+.| .++++.|++|+-..++...|.-.-.-++..|...+..
T Consensus 72 ~~A~aiEllH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~ 129 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVID------------ECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLAN 129 (323)
T ss_pred HHHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHh
Confidence 345556667778889999966 4567788888877776555544444455555554443
No 38
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=70.01 E-value=12 Score=34.06 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhccCC
Q 024239 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEV 252 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l~~ 252 (270)
.+...-+-+=.+.=|.||+.| .+|++.|++|....++-..|.-.-.-++..|.+.+...+.
T Consensus 70 ~~aaavEliH~~SLiHDDvmD------------~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~ 130 (322)
T COG0142 70 DLAAAIELIHTASLIHDDLMD------------DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGS 130 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccc------------CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344455556667778999955 4688999999999998777777777778888888887643
No 39
>PLN00012 chlorophyll synthetase; Provisional
Probab=67.77 E-value=17 Score=34.01 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHH
Q 024239 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237 (270)
Q Consensus 187 ~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~ 237 (270)
-+++++-+.+|+.|+. .|.+.|+.|+|+.++.+.+...+-
T Consensus 263 l~~lai~ivnd~~Die-----------~Dr~aG~~TLpV~~G~~~a~~l~~ 302 (375)
T PLN00012 263 IAGLGIAIVNDFKSIE-----------GDRALGLQSLPVAFGVETAKWICV 302 (375)
T ss_pred HHHHHHHHHhhhcchh-----------hHHHcCCcccceeechHHHHHHHH
Confidence 4778899999998884 567789999999999887765543
No 40
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=65.78 E-value=98 Score=27.47 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--CCC-cCccchhhhcChhHHHHHHHHHHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDND--DLR-RGKPTNHKVFGEPTAILAGDALLALAFEHVA 101 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~--~~R-Rg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 101 (270)
.-...++=++|.+.-+..|+-+.|-| ..| +.+|...-+...+.|...+-.+...++-...
T Consensus 43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34445567889999999999333233 233 4688888888888888887766666655443
No 41
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=63.90 E-value=1e+02 Score=27.10 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcCccchhhhcChhHHHHHHHHHHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDND-DLRRGKPTNHKVFGEPTAILAGDALLALAFEHVA 101 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~-~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 101 (270)
.-...++=++|.+.-+..|+-+.|-| ..|+.+|........+.|...+-.+...++-...
T Consensus 41 ~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 41 GLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34555677899999999999333333 2357788888777888888887777766654443
No 42
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=60.90 E-value=1.3e+02 Score=27.21 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCC---cCccchhhhcChhHHHHHHHHHHHHHHHH
Q 024239 46 CALEMTHTMSLIHDDLPALDNDDLR---RGKPTNHKVFGEPTAILAGDALLALAFEH 99 (270)
Q Consensus 46 ~avElih~asLihDDI~~~D~~~~R---Rg~pt~~~~~G~~~Ail~Gd~L~~~a~~~ 99 (270)
.+.=++|.++-++.|+ .|.+.-| +.+|...-+...+.+...+-.++..++-.
T Consensus 72 l~~~l~~~~~~~~Nd~--~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 126 (314)
T PRK07566 72 LAGPLLCGTSQTLNDY--FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAV 126 (314)
T ss_pred HHHHHHHHHHHHHhhh--hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHH
Confidence 3355689999999999 6755433 56777777777788887776666655543
No 43
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=57.93 E-value=1.2e+02 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024239 164 VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDV 201 (270)
Q Consensus 164 ~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 201 (270)
+.+.+.+.|.+.+....+...-+-+=.+.-+.||+.|=
T Consensus 6 ~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~ 43 (236)
T cd00867 6 VLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDD 43 (236)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 33344444555666666777777788888999999873
No 44
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=55.68 E-value=51 Score=29.71 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCC---cCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 45 ACALEMTHTMSLIHDDLPALDNDDLR---RGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 45 A~avElih~asLihDDI~~~D~~~~R---Rg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
..+.=++|.++-++.|+ .|.+.-| |.+|........+.+...+-.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy--~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDF--YDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhH--hhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 35568999999999999 7755323 456666666677777777655554443
No 45
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=53.99 E-value=61 Score=29.01 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHHHHHHH
Q 024239 41 VMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFEHVA 101 (270)
Q Consensus 41 ~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 101 (270)
...++.++=+.-.+.++.-++|+++.|. +.|+.|.-.++|.+.|....-.++..++-.+.
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr-~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADR-EAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHH-HcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788999999998777774 57999999999999998777777666654443
No 46
>PLN02890 geranyl diphosphate synthase
Probab=53.85 E-value=1.2e+02 Score=28.92 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 180 RVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 180 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
.+...-+-+=.|.-|.||+.| .+|.+.|++|+-..++...|.-.-.-++..|...+..+
T Consensus 165 ~~AaavEliH~ASLVHDDIiD------------~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~ 223 (422)
T PLN02890 165 NIAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAAL 223 (422)
T ss_pred HHHHHHHHHHHHHHHHccccc------------CCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcC
Confidence 456667777788899999977 35678888888877776666555555666666665543
No 47
>PRK13595 ubiA prenyltransferase; Provisional
Probab=53.65 E-value=1.2e+02 Score=27.32 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHH
Q 024239 160 LEASVVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEEL 239 (270)
Q Consensus 160 f~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~ 239 (270)
+..|...|+...|......- + -...-.+++|++.-|+.|.. .|.+.|..|+|+.++.+.+-..+.-.
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~-l-~a~~~w~~g~dii~ai~Die-----------gDr~~Gi~Slpv~lG~r~a~~~a~~~ 221 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP-L-LALMAWSVGKHAFDAAQDIP-----------ADRAAGTRTVATTLGVRGTALYALAW 221 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH-H-HHHHHHHHHHHHHHhccChH-----------hHHHcCCeechHHhCcHhHHHHHHHH
Confidence 56677777766664432221 2 23344558999999999974 46678999999999988887776665
Q ss_pred HHHHHHHhh
Q 024239 240 FSQATKELA 248 (270)
Q Consensus 240 ~~~a~~~L~ 248 (270)
.--+.-.+-
T Consensus 222 ~~~a~~~~~ 230 (292)
T PRK13595 222 FLLAGALLW 230 (292)
T ss_pred HHHHHHHHH
Confidence 544444433
No 48
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=49.99 E-value=47 Score=29.41 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHH
Q 024239 189 GLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238 (270)
Q Consensus 189 G~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~ 238 (270)
..+..+.+|+.|+. +|.+.|+.|+|+.++.+.++....-
T Consensus 174 ~~~i~~~nd~~D~~-----------~D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 174 AHGIMTLNDFKSVE-----------GDRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred HHHHHHHHhccchh-----------hHHHcCCcCcceEEcHHHHHHHHHH
Confidence 34567889998884 5677899999999988887765443
No 49
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=43.13 E-value=2.6e+02 Score=25.36 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC-CCC--cCccchhhhcChhHHHHHHHHHHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDND-DLR--RGKPTNHKVFGEPTAILAGDALLALAFEHVA 101 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~-~~R--Rg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 101 (270)
.-...+.=++|+++-++.|+-+.|-| ..+ |.+|....+...+.|+..+-.+...++-.+.
T Consensus 75 ~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666899999999998333333 234 4688888888888887777666555555544
No 50
>PLN02857 octaprenyl-diphosphate synthase
Probab=42.92 E-value=1.7e+02 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024239 30 SCELVGGDESLVMPMACALEMTHTMSLIHDDLPALD 65 (270)
Q Consensus 30 ~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D 65 (270)
++-+.|.+++....+..-=+.+=.++=|.||+ +|
T Consensus 279 gallaga~~~~~~~l~~fG~~LGiAFQI~DDi--LD 312 (416)
T PLN02857 279 AAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDI--LD 312 (416)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hh
Confidence 33344555555556777778888899999999 66
No 51
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=41.66 E-value=86 Score=28.01 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHH
Q 024239 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237 (270)
Q Consensus 187 ~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~ 237 (270)
-+..++.+.+++.|+ ..|.+.|+.|+|+.++.+.+...+.
T Consensus 176 l~~~~~~~in~i~Di-----------e~D~~aGi~Tlav~lG~~~a~~~~~ 215 (282)
T PRK12875 176 LWAMGMHTFSAIPDI-----------EPDRAAGIRTTATVLGERRTYAYCA 215 (282)
T ss_pred HHHHHHHHHHhccCH-----------HHHHHcCCccchhhccHhhHHHHHH
Confidence 455667778888887 4577889999999999887775433
No 52
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=41.55 E-value=89 Score=28.68 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHh-hHHHH----------
Q 024239 164 VVCGVIIGGGNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLM-GIENA---------- 232 (270)
Q Consensus 164 ~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~-~l~~a---------- 232 (270)
|+.|++.+-.+....+.+-+|- +|||-+.|+||=..|....--| ..+..++ ++..|
T Consensus 37 ceGgsi~al~~~~~~~~~i~fI----VAyQTIsDYLDNLcDrs~~~d~---------~~Fr~LH~am~dAl~p~a~~~dY 103 (330)
T PF10776_consen 37 CEGGSIYALLPGENRDELIRFI----VAYQTISDYLDNLCDRSTSLDP---------KDFRQLHQAMLDALDPGAPLSDY 103 (330)
T ss_pred CcchhhhhhcCCccHhhHHHHH----HHHHHHHHHHHhhhhccCCCCh---------HHHHHHHHHHHHHcCCCCCcchH
Q ss_pred ---------HHHHHHHHHHHHHHhhccCCCCh--HHHHHHHHH
Q 024239 233 ---------KKFAEELFSQATKELAYFEVSKA--APLYHLAKY 264 (270)
Q Consensus 233 ---------~~~~~~~~~~a~~~L~~l~~~~~--~~L~~l~~~ 264 (270)
--....+++.|.+.+..+|+-.. ..+.+++.+
T Consensus 104 Y~~~~~~dDGGYL~~LV~tCq~~l~~lP~y~~V~~~l~~la~l 146 (330)
T PF10776_consen 104 YRYRPEQDDGGYLRALVRTCQQVLAQLPSYELVRPYLLELARL 146 (330)
T ss_pred HHcCCccccChHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 53
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=40.53 E-value=2.5e+02 Score=24.57 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHH
Q 024239 187 CIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237 (270)
Q Consensus 187 ~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~ 237 (270)
-+-.+.++..|+.|.. .|.+.|+.|+|+.++.++++....
T Consensus 172 l~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~lG~~~t~~~~~ 211 (285)
T PRK12872 172 LKSFIREIVFDIKDIE-----------GDRKSGLKTLPIVLGKERTLKFLL 211 (285)
T ss_pred HHHHHHHHHHhcccch-----------hHHHcCCcccchhcchHHHHHHHH
Confidence 3456788999999885 456789999999999888766543
No 54
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=39.41 E-value=56 Score=29.57 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHH
Q 024239 183 NYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFA 236 (270)
Q Consensus 183 ~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~ 236 (270)
-+.--.-.++.+.+|+.|.. .|.+.|+.|+|+.+|.+.+...+
T Consensus 189 ~~~~~~~~~~~l~~di~D~e-----------gD~~~Gi~Tlav~lG~~~a~~l~ 231 (308)
T PRK12887 189 LFVLVFTFAIAIFKDIPDME-----------GDRQYQITTFTLRLGKQAVFKLS 231 (308)
T ss_pred HHHHHHHHHHHHHHhccchh-----------hHHHcCCcchhHHHhHHHHHHHH
Confidence 34444556788899999984 46678999999999887776543
No 55
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=39.36 E-value=96 Score=25.98 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhccc
Q 024239 189 GLLFQVVDDILDVTKS 204 (270)
Q Consensus 189 G~afQi~DD~ld~~~~ 204 (270)
.+.++||+|+.|+-++
T Consensus 59 ~~L~~IQ~~LF~lG~d 74 (184)
T COG2096 59 AILRRIQNDLFDLGAD 74 (184)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3678999999998544
No 56
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=39.13 E-value=1.1e+02 Score=27.44 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHH
Q 024239 48 LEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAIL 87 (270)
Q Consensus 48 vElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail 87 (270)
.=++..+.++..++|++++| .|.|++|.-.++|.+.+..
T Consensus 174 ~~l~~~~~~~in~i~Die~D-~~aGi~Tlav~lG~~~a~~ 212 (282)
T PRK12875 174 GWLWAMGMHTFSAIPDIEPD-RAAGIRTTATVLGERRTYA 212 (282)
T ss_pred HHHHHHHHHHHHhccCHHHH-HHcCCccchhhccHhhHHH
Confidence 34667777888899777655 4689999999999998764
No 57
>PLN02878 homogentisate phytyltransferase
Probab=38.71 E-value=1.3e+02 Score=26.87 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHHHH
Q 024239 49 EMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAFE 98 (270)
Q Consensus 49 Elih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~ 98 (270)
-+.-..-.+..|+|++++|. ..|..|.-.++|.+.+....-.++..++-
T Consensus 166 ~~f~~~i~i~KDi~DieGD~-~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDR-IFGIRSFSVRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred HHHHHHHHHHhhCcCchhHH-HCCCceechhhChHHHHHHHHHHHHHHHH
Confidence 33344556889999888774 45999999999998887776666666664
No 58
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=37.38 E-value=1.3e+02 Score=27.88 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=33.8
Q ss_pred hhhCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCC---------CCCcCccchhh
Q 024239 14 SLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDND---------DLRRGKPTNHK 78 (270)
Q Consensus 14 ~~~~~GK~lRp~l~l~~~~~~g~~~~~~~~lA~avElih~asLihDDI~~~D~~---------~~RRg~pt~~~ 78 (270)
.+...-||+-|.+.-.+.-.+=.-......+-+++-+--++.++.||+ .|+- ++-.|+|.-|-
T Consensus 55 ~~~~~p~ri~~~~~T~v~~~~Y~w~~~skev~~~isi~~tY~~~lDD~--~~e~~~~m~~f~~dL~~G~~qkhP 126 (357)
T cd00686 55 LLKVDPKRLQASLQTIVGMVVYSWAKVSKECMADLSIHYTYTLVLDDS--KDDPYPTMVNYFDDLQAGREQAHP 126 (357)
T ss_pred hhcCCHHHHHHHHHHhhceEEeeccCCCHHHHHHHHHHHheeeEeccc--ccccchHHHHHHHHHhcCCCCCCc
Confidence 344566777776654433311000112233445566677889999999 5532 33456665554
No 59
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=36.50 E-value=1.7e+02 Score=25.86 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 38 ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 38 ~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
.....-++..+-++-...++..|++++++|. +.|+.|.-..+|.+.+...--.+...++
T Consensus 167 ~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~-~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 167 DSAVFLPALPCGLLIGAVLLANNIRDIETDR-ENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcchhHH-HcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 3445666777778888888989997777664 5799999999999876654444444333
No 60
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=36.48 E-value=1.4e+02 Score=26.24 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHH
Q 024239 35 GGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGD 90 (270)
Q Consensus 35 g~~~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd 90 (270)
++.......++..+=+......+.-|+|++|+| .+.|.+|.-..+|.+.+....-
T Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~~G~~~~~~~~~ 205 (279)
T PRK12884 151 GELNEAVILLAAMAFLMTLGREIMKDIEDVEGD-RLRGARTLAILYGEKIAGRIAA 205 (279)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHcCCeeechHhcHHHHHHHHH
Confidence 443334444444444444455556677555544 4579999999999998776543
No 61
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=36.27 E-value=2.7e+02 Score=26.16 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHHHHhhcc
Q 024239 173 GNVIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 173 ~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+.+.....+..+.+-+=.+-=|.||+-.+-. .|++.||+|--.+++-..|.=.-+-++..|-+.|..+
T Consensus 125 g~~~~q~~~A~i~EMIHtaSLIHDDv~~mD~----------~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l 192 (384)
T KOG0776|consen 125 GDESSQRSLAEIVEMIHTASLIHDDVPCMDD----------ADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASL 192 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcccccc----------cccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhc
Confidence 4555567788899999999999999933322 3566666666666654444433444555555555555
No 62
>PRK13591 ubiA prenyltransferase; Provisional
Probab=35.54 E-value=3.4e+02 Score=24.64 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHH
Q 024239 190 LLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEE 238 (270)
Q Consensus 190 ~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~ 238 (270)
.+..+.+|+.|.. +|.++|+.|+|+.++.+.|.....-
T Consensus 193 ~~~~iindirDiE-----------GDr~~G~kTLPV~lG~~~A~~l~~~ 230 (307)
T PRK13591 193 FINSCVYDFKDVK-----------GDTLAGIKTLPVSLGEQKTRNLLLG 230 (307)
T ss_pred HHHHHHHHhhhhH-----------hHHHcCCeeEEEEECHHHHHHHHHH
Confidence 3345789999985 4678899999999999888766543
No 63
>PLN02279 ent-kaur-16-ene synthase
Probab=34.96 E-value=4.8e+02 Score=27.05 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCCC--CCCHHHHHHHHhhchHHHHHHHHHHHHHhcC-CCHHHHH--HHHHHHHHHHHHHHHHHhhhhhcc
Q 024239 129 LKGQVTDLDSEGK--DVSLSELEYIHVHKTAKLLEASVVCGVIIGG-GNVIEIE--RVRNYARCIGLLFQVVDDILDVTK 203 (270)
Q Consensus 129 ~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~lf~~~~~~ga~la~-~~~~~~~--~l~~~g~~lG~afQi~DD~ld~~~ 203 (270)
+.+-..+..|... .+|.++|..... .|..+-...+.....++. .+++..+ ...++-+..+....+.||+..+-.
T Consensus 603 l~ayl~EAeW~~~g~vPT~eEYL~na~-vS~~l~~i~l~~~~~~G~~l~eev~e~~~~~~L~~l~s~I~RLlNDI~S~e~ 681 (784)
T PLN02279 603 LKSMLTEAQWSSNKSTPTLDEYMTNAY-VSFALGPIVLPALYLVGPKLSEEVVDSPELHKLYKLMSTCGRLLNDIRGFKR 681 (784)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhhch-hhhhhHHHHHHHHHHhCCCCCHHHHhCcchhHHHHHHHHHHHHHHhccccHh
Confidence 3343334444422 268888877642 333321111111111122 2333332 345677778888899999877643
Q ss_pred cccccCCCccchhhhCCCcHHHHh--------hHHHHHHHHHHHHHHHHHHhhcc
Q 024239 204 SSTVLGKTAGKDLVSDKATYPKLM--------GIENAKKFAEELFSQATKELAYF 250 (270)
Q Consensus 204 ~~~~~gK~~~~Dl~~gk~T~p~i~--------~l~~a~~~~~~~~~~a~~~L~~l 250 (270)
+ ..+|+.+...++ ..+.|.+.++..++.+++.|.+.
T Consensus 682 E-----------~~rG~~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~ 725 (784)
T PLN02279 682 E-----------SKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRL 725 (784)
T ss_pred H-----------HhCCCcceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333333333 35677777888888888877753
No 64
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=34.25 E-value=1.2e+02 Score=27.43 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHH
Q 024239 40 LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALA 96 (270)
Q Consensus 40 ~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a 96 (270)
...-++...-+...+.++..|++++++| .|.|++|.-..+|.+.+....-+++..+
T Consensus 190 ~~~l~~~~~~l~~~~~~~~~d~~D~e~D-~~aG~~Tlpv~~G~~~a~~l~~~l~~~~ 245 (314)
T PRK07566 190 PIVILALLYSLGAHGIMTLNDFKSVEGD-RQLGLRSLPVVFGEKNAARIACVVIDLF 245 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhH-HHcCCcccceeEcHHHHHHHHHHHHHHH
Confidence 3344455555566666778888655544 4569999999999998776554444443
No 65
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=34.23 E-value=3.3e+02 Score=24.00 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCC----CC-cCccchhhhcChhHHHHHHHHHH
Q 024239 41 VMPMACALEMTHTMSLIHDDLPALDNDD----LR-RGKPTNHKVFGEPTAILAGDALL 93 (270)
Q Consensus 41 ~~~lA~avElih~asLihDDI~~~D~~~----~R-Rg~pt~~~~~G~~~Ail~Gd~L~ 93 (270)
..-...+.=++|.+..+..|+ .|.+. .| +.+|-...+...+.|...+-.+.
T Consensus 38 ~~l~~l~~~l~~~a~~~~Nd~--~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 93 (282)
T TIGR01475 38 LILILIAAVSARTAAMAFNRI--IDRAIDARNPRTKNRPLVSGLISKKEARTMIILSL 93 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 444555667899999999998 55332 22 56777777777777777665433
No 66
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=33.00 E-value=1.8e+02 Score=25.63 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDAL 92 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L 92 (270)
.-++..+-+.-.+.+...|++++++| .+.|++|.-..+|.+.+...--.+
T Consensus 164 ~~~~~~~~l~~~~i~~~nd~~D~~~D-~~~G~~Tl~v~lG~~~a~~l~~~l 213 (283)
T TIGR01476 164 VVVALIYSLGAHGIMTLNDFKSVEGD-RQLGLRSLPVMIGVKRAAIVAVTT 213 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhH-HHcCCcCcceEEcHHHHHHHHHHH
Confidence 33455555666677889999666555 457999999999999876654443
No 67
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=31.96 E-value=50 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhhcccccccCCCc
Q 024239 190 LLFQVVDDILDVTKSSTVLGKTA 212 (270)
Q Consensus 190 ~afQi~DD~ld~~~~~~~~gK~~ 212 (270)
-..+|.+|++|+|.....-|+++
T Consensus 45 ~~~~il~dildlfEe~aadG~~V 67 (103)
T PF06304_consen 45 DMMEILSDILDLFEEAAADGKSV 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHcCCCh
Confidence 35689999999998877777774
No 68
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=31.53 E-value=2.1e+02 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHH
Q 024239 40 LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLAL 95 (270)
Q Consensus 40 ~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~ 95 (270)
...-++..+=+.-.+.++..|++++++| .|.|++|.-..+|.+.+......++..
T Consensus 184 ~~~l~~~~~~l~~~~i~~~n~~~D~e~D-~~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 184 DIAVLTLIYSIAGLGIAIVNDFKSVEGD-RALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHH-HHcCCcCcchhcChHHHHHHHHHHHHH
Confidence 3334444455566677788999666655 467999999999999887666654443
No 69
>PLN02878 homogentisate phytyltransferase
Probab=30.19 E-value=97 Score=27.75 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHHH
Q 024239 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQAT 244 (270)
Q Consensus 184 ~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a~ 244 (270)
|..-+..+.-+..|+.|+.| |-+.|..|+|+.+|.+++...+--...-|.
T Consensus 164 f~~~f~~~i~i~KDi~DieG-----------D~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY 213 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEG-----------DRIFGIRSFSVRLGQKRVFWLCVNLLEMAY 213 (280)
T ss_pred HHHHHHHHHHHHhhCcCchh-----------HHHCCCceechhhChHHHHHHHHHHHHHHH
Confidence 33344444459999999865 456789999999998888777665555444
No 70
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=29.56 E-value=1.8e+02 Score=27.91 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHH---HHhhHHHHHHHHHHHHHHHHHHhhcc-CCCCh-HHH
Q 024239 184 YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYP---KLMGIENAKKFAEELFSQATKELAYF-EVSKA-APL 258 (270)
Q Consensus 184 ~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p---~i~~l~~a~~~~~~~~~~a~~~L~~l-~~~~~-~~L 258 (270)
....|.-+|-..-.--.+.++.+-.-|.+-.|.-|.-.|+- ..|+|.++.-..-.|+..|.+.|.+- |...+ +.|
T Consensus 216 L~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM~E~amtF~dyV~~YgLaRSEGvlLRYLsDAyraL~qtVP~~~rteel 295 (461)
T PF12029_consen 216 LAELLEAAFETYRRGHPWVGDFELSPKSVVRDMYERAMTFSDYVSRYGLARSEGVLLRYLSDAYRALRQTVPEDARTEEL 295 (461)
T ss_pred hHHHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHhhCCHHHHHHHhCcchhhhHHHHHHHHHHHHHhhhCChhhcCchH
Confidence 46677778877777777777777777888888888888875 55799999999999999999999976 65544 789
Q ss_pred HHHHHHHH
Q 024239 259 YHLAKYIV 266 (270)
Q Consensus 259 ~~l~~~~~ 266 (270)
.++++|+-
T Consensus 296 ~dii~WLg 303 (461)
T PF12029_consen 296 EDIIEWLG 303 (461)
T ss_pred HHHHHHHH
Confidence 99998874
No 71
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=28.73 E-value=4.6e+02 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHH
Q 024239 181 VRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAE 237 (270)
Q Consensus 181 l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~ 237 (270)
+.-+.--+..++-+.+|+.|.. .|.+.|+.|+|+.++.+.+...+-
T Consensus 185 l~~~~~l~~~~~~~i~d~~D~e-----------gD~~~G~kTlpV~~G~~~a~~i~~ 230 (331)
T PRK12392 185 LAGLNFFMAIALIIMNDFKSVE-----------GDKEGGLKSLTVMIGAKNTFLVSF 230 (331)
T ss_pred HHHHHHHHHHHHHHHHcccchh-----------hHHHcCCeeeEeEEcHhhHHHHHH
Confidence 3444445667888889998884 467789999999988777655443
No 72
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=25.54 E-value=3.1e+02 Score=24.01 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHH
Q 024239 53 TMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAG 89 (270)
Q Consensus 53 ~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~G 89 (270)
.+..+..|++++++| .+.|.||.-..+|.+.+....
T Consensus 171 ~~~~~~~~~~D~e~D-~~~G~~tlpv~~G~~~t~~~~ 206 (276)
T PRK12882 171 LAREIIKDVEDIEGD-RAEGARTLPILIGVRKALYVA 206 (276)
T ss_pred HHHHHHhhhhhhhhH-HHcCCccccHHhhHHHHHHHH
Confidence 344555677544544 467999999999999776543
No 73
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=25.43 E-value=42 Score=30.34 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 024239 41 VMPMACALEMTHTMSLIHDDLP 62 (270)
Q Consensus 41 ~~~lA~avElih~asLihDDI~ 62 (270)
...++.|+|++|.--|||.||-
T Consensus 127 ~~ql~SAi~fMHsknlVHRdlK 148 (378)
T KOG1345|consen 127 FAQLLSAIEFMHSKNLVHRDLK 148 (378)
T ss_pred HHHHHHHHHHhhccchhhcccc
Confidence 3579999999999999999984
No 74
>PLN02922 prenyltransferase
Probab=23.57 E-value=3.9e+02 Score=24.23 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHHH
Q 024239 40 LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALAF 97 (270)
Q Consensus 40 ~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~ 97 (270)
...-++..+-++-++.+...+++++++| .|-|+-|.-..+|.+.|...=-.++..++
T Consensus 189 ~~~l~slp~gll~~~iL~~Nn~rD~e~D-~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 189 TVLSASVLVGLTTTLILFCSHFHQIDGD-RAVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcchhhH-HHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 3445677788888899999999777755 45789999999999988765545544443
No 75
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=23.16 E-value=4.6e+02 Score=22.08 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHH
Q 024239 160 LEASVVCGVIIGGGN-VIEIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKK 234 (270)
Q Consensus 160 f~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~ 234 (270)
+.....+|....+.+ ....-.+.-+.--++......+|+.|+. +|.+.|+.|+|+.++.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----------~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 129 FGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIE-----------GDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred hhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHcCCcchHHHHHHHHHHH
Confidence 334444454444443 2223334444466777888888999885 456788999999998777765
No 76
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=22.63 E-value=3.9e+02 Score=23.81 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHH
Q 024239 40 LVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAIL 87 (270)
Q Consensus 40 ~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail 87 (270)
...-.+..+-++-+..+...++|++|+| .+.|+.|.-..+|.+.+..
T Consensus 172 ~~~~~sl~~~l~~~~il~~n~~~D~e~D-~~~G~~Tlav~lG~~~a~~ 218 (296)
T PRK05951 172 PNLLAGVPLGLLMALVLLSNNLRDIEDD-ERKGIPTLAVIFGRRGAAL 218 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchhH-HHCCCeeeeeeEcHhhHHH
Confidence 3444555667777788888999766644 4679999999999998844
No 77
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=22.22 E-value=1.9e+02 Score=26.16 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHHHHHHHHH
Q 024239 42 MPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAILAGDALLALA 96 (270)
Q Consensus 42 ~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a 96 (270)
.-++..+-+.-.+..+.-|+|++++|. +.|+.|.-..+|.+.+....-.++..+
T Consensus 185 ~l~~~~~~~~~~~~~l~~di~D~egD~-~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 185 WLLTLFVLVFTFAIAIFKDIPDMEGDR-QYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHH-HcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 344555666667778889998777664 579999999999998875555444433
No 78
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=22.02 E-value=5.4e+02 Score=22.53 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCC---CcCccchhhhcChhHHHHHHHHHHHHHHHHHH
Q 024239 41 VMPMACALEMTHTMSLIHDDLPALDNDDL---RRGKPTNHKVFGEPTAILAGDALLALAFEHVA 101 (270)
Q Consensus 41 ~~~lA~avElih~asLihDDI~~~D~~~~---RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~ 101 (270)
..-...++=++|.+.-+..|+ .|-+.- ++.+|....+...+.|...+-.+...++-...
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~--~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~ 100 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDI--YDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSI 100 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 344555677999999999999 554432 36788888788888898888777776664433
No 79
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=21.34 E-value=2e+02 Score=24.30 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHhCCC-hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHH
Q 024239 30 SCELVGGD-ESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKPTNHKVFGEPTAIL 87 (270)
Q Consensus 30 ~~~~~g~~-~~~~~~lA~avElih~asLihDDI~~~D~~~~RRg~pt~~~~~G~~~Ail 87 (270)
++...+++ +....-++..+-++-.+.....|++++++| .+.|++|.-..+|.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D-~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 136 GAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGD-RKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred hhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHcCCcchHHHHHHHHHHH
Confidence 33334444 333444444444444444444488777777 7789999999999998865
No 80
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=20.74 E-value=88 Score=21.35 Aligned_cols=28 Identities=0% Similarity=0.178 Sum_probs=21.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhcc
Q 024239 242 QATKELAYFEVSKAAPLYHLAKYIVSRQ 269 (270)
Q Consensus 242 ~a~~~L~~l~~~~~~~L~~l~~~~~~R~ 269 (270)
+-.+.++.+|++....+..+++|+..|.
T Consensus 4 ~l~~~i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 4 ELLEKIQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhc
Confidence 3456677787777788999999997763
No 81
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=20.67 E-value=56 Score=29.55 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHhhhhhcccccccCCCccchhhhCCCcHHHHhhHHHHHHHHHHHHHHH
Q 024239 194 VVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQA 243 (270)
Q Consensus 194 i~DD~ld~~~~~~~~gK~~~~Dl~~gk~T~p~i~~l~~a~~~~~~~~~~a 243 (270)
..|++.|+ -+|.+.||.|+|+.++.++++....-..--+
T Consensus 192 ~~Nn~rD~-----------e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 192 FCSHFHQV-----------EDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI 230 (304)
T ss_pred HHcCCcch-----------hhHHHcCCcceeeeechHhHHHHHHHHHHHH
Done!